evolvable 1.2.0 → 2.0.0
This diff represents the content of publicly available package versions that have been released to one of the supported registries. The information contained in this diff is provided for informational purposes only and reflects changes between package versions as they appear in their respective public registries.
- checksums.yaml +4 -4
- data/.yardopts +2 -0
- data/CHANGELOG.md +24 -0
- data/Gemfile +2 -2
- data/Gemfile.lock +44 -25
- data/README.md +498 -190
- data/README_YARD.md +85 -166
- data/bin/console +10 -19
- data/docs/Evolvable/ClassMethods.html +1233 -0
- data/docs/Evolvable/Community/ClassMethods.html +708 -0
- data/docs/Evolvable/Community.html +1342 -0
- data/docs/Evolvable/CountGene.html +886 -0
- data/docs/Evolvable/EqualizeGoal.html +347 -0
- data/docs/Evolvable/Error.html +134 -0
- data/docs/Evolvable/Evaluation.html +773 -0
- data/docs/Evolvable/Evolution.html +616 -0
- data/docs/Evolvable/Gene/ClassMethods.html +413 -0
- data/docs/Evolvable/Gene.html +522 -0
- data/docs/Evolvable/GeneCluster/ClassMethods.html +431 -0
- data/docs/Evolvable/GeneCluster.html +280 -0
- data/docs/Evolvable/GeneCombination.html +515 -0
- data/docs/Evolvable/GeneSpace.html +619 -0
- data/docs/Evolvable/Genome.html +1070 -0
- data/docs/Evolvable/Goal.html +500 -0
- data/docs/Evolvable/MaximizeGoal.html +348 -0
- data/docs/Evolvable/MinimizeGoal.html +348 -0
- data/docs/Evolvable/Mutation.html +729 -0
- data/docs/Evolvable/PointCrossover.html +444 -0
- data/docs/Evolvable/Population.html +2826 -0
- data/docs/Evolvable/RigidCountGene.html +501 -0
- data/docs/Evolvable/Selection.html +594 -0
- data/docs/Evolvable/Serializer.html +293 -0
- data/docs/Evolvable/UniformCrossover.html +286 -0
- data/docs/Evolvable.html +1619 -0
- data/docs/_index.html +341 -0
- data/docs/class_list.html +54 -0
- data/docs/css/common.css +1 -0
- data/docs/css/full_list.css +58 -0
- data/docs/css/style.css +503 -0
- data/docs/file.README.html +750 -0
- data/docs/file_list.html +59 -0
- data/docs/frames.html +22 -0
- data/docs/index.html +750 -0
- data/docs/js/app.js +344 -0
- data/docs/js/full_list.js +242 -0
- data/docs/js/jquery.js +4 -0
- data/docs/method_list.html +1302 -0
- data/docs/top-level-namespace.html +110 -0
- data/evolvable.gemspec +6 -6
- data/examples/ascii_art.rb +5 -9
- data/examples/stickman.rb +25 -33
- data/{examples/hello_world.rb → exe/hello_evolvable_world} +46 -30
- data/lib/evolvable/community.rb +190 -0
- data/lib/evolvable/count_gene.rb +65 -0
- data/lib/evolvable/equalize_goal.rb +2 -9
- data/lib/evolvable/evaluation.rb +113 -14
- data/lib/evolvable/evolution.rb +38 -15
- data/lib/evolvable/gene.rb +124 -25
- data/lib/evolvable/gene_cluster.rb +106 -0
- data/lib/evolvable/gene_combination.rb +57 -16
- data/lib/evolvable/gene_space.rb +111 -0
- data/lib/evolvable/genome.rb +32 -4
- data/lib/evolvable/goal.rb +19 -24
- data/lib/evolvable/maximize_goal.rb +2 -9
- data/lib/evolvable/minimize_goal.rb +3 -9
- data/lib/evolvable/mutation.rb +87 -41
- data/lib/evolvable/point_crossover.rb +24 -4
- data/lib/evolvable/population.rb +258 -84
- data/lib/evolvable/rigid_count_gene.rb +36 -0
- data/lib/evolvable/selection.rb +68 -14
- data/lib/evolvable/serializer.rb +46 -0
- data/lib/evolvable/uniform_crossover.rb +30 -6
- data/lib/evolvable/version.rb +2 -1
- data/lib/evolvable.rb +268 -107
- metadata +57 -36
- data/examples/images/diagram.png +0 -0
- data/exe/hello +0 -16
- data/lib/evolvable/error/undefined_method.rb +0 -7
- data/lib/evolvable/search_space.rb +0 -181
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Class: Evolvable::Serializer
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— Documentation by YARD 0.9.37
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<a href="../_index.html">Index (S)</a> »
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<span class='title'><span class='object_link'><a href="../Evolvable.html" title="Evolvable (module)">Evolvable</a></span></span>
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<span class="inheritName">Object</span>
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<p>Evolvable supports saving and restoring the state of both populations
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and individual evolvable instances through a built-in <code>Serializer</code>.
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By default, it uses Ruby's <code>Marshal</code> class for fast, portable binary serialization.</p>
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<p>Serialization is useful for:</p>
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<li>Saving progress during long-running evolution</li>
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<li>Storing champion solutions for later reuse</li>
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<li>Transferring evolved populations between systems</li>
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<li>Creating checkpoints you can revert to</li>
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<p>Both <code>Population</code> and individual evolvables expose <code>dump</code> and <code>load</code> methods
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that use the <code>Serializer</code> internally.</p>
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<p>Save a population to a file:</p>
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<pre class="code ruby"><code class="ruby"><span class='id identifier rubyid_population'>population</span> <span class='op'>=</span> <span class='const'>YourEvolvable</span><span class='period'>.</span><span class='id identifier rubyid_new_population'>new_population</span>
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<span class='id identifier rubyid_population'>population</span><span class='period'>.</span><span class='id identifier rubyid_evolve'>evolve</span><span class='lparen'>(</span><span class='label'>count:</span> <span class='int'>100</span><span class='rparen'>)</span>
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<span class='const'>File</span><span class='period'>.</span><span class='id identifier rubyid_write'>write</span><span class='lparen'>(</span><span class='tstring'><span class='tstring_beg'>"</span><span class='tstring_content'>population.marshal</span><span class='tstring_end'>"</span></span><span class='comma'>,</span> <span class='id identifier rubyid_population'>population</span><span class='period'>.</span><span class='id identifier rubyid_dump'>dump</span><span class='rparen'>)</span>
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</code></pre>
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<p>Restore and continue evolution:</p>
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<pre class="code ruby"><code class="ruby"><span class='id identifier rubyid_data'>data</span> <span class='op'>=</span> <span class='const'>File</span><span class='period'>.</span><span class='id identifier rubyid_read'>read</span><span class='lparen'>(</span><span class='tstring'><span class='tstring_beg'>"</span><span class='tstring_content'>population.marshal</span><span class='tstring_end'>"</span></span><span class='rparen'>)</span>
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<span class='id identifier rubyid_restored'>restored</span> <span class='op'>=</span> <span class='const'><span class='object_link'><a href="../Evolvable.html" title="Evolvable (module)">Evolvable</a></span></span><span class='op'>::</span><span class='const'><span class='object_link'><a href="Population.html" title="Evolvable::Population (class)">Population</a></span></span><span class='period'>.</span><span class='id identifier rubyid_load'><span class='object_link'><a href="Population.html#load-class_method" title="Evolvable::Population.load (method)">load</a></span></span><span class='lparen'>(</span><span class='id identifier rubyid_data'>data</span><span class='rparen'>)</span>
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<span class='id identifier rubyid_restored'>restored</span><span class='period'>.</span><span class='id identifier rubyid_evolve'>evolve</span><span class='lparen'>(</span><span class='label'>count:</span> <span class='int'>100</span><span class='rparen'>)</span>
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</code></pre>
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<p>Save an individual evolvable's genome:</p>
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<pre class="code ruby"><code class="ruby"><span class='id identifier rubyid_best'>best</span> <span class='op'>=</span> <span class='id identifier rubyid_restored'>restored</span><span class='period'>.</span><span class='id identifier rubyid_best_evolvable'>best_evolvable</span>
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<span class='const'>File</span><span class='period'>.</span><span class='id identifier rubyid_write'>write</span><span class='lparen'>(</span><span class='tstring'><span class='tstring_beg'>"</span><span class='tstring_content'>champion.marshal</span><span class='tstring_end'>"</span></span><span class='comma'>,</span> <span class='id identifier rubyid_best'>best</span><span class='period'>.</span><span class='id identifier rubyid_dump_genome'>dump_genome</span><span class='rparen'>)</span>
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</code></pre>
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<p>Restore genome into a new evolvable:</p>
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<pre class="code ruby"><code class="ruby"><span class='id identifier rubyid_raw'>raw</span> <span class='op'>=</span> <span class='const'>File</span><span class='period'>.</span><span class='id identifier rubyid_read'>read</span><span class='lparen'>(</span><span class='tstring'><span class='tstring_beg'>"</span><span class='tstring_content'>champion.marshal</span><span class='tstring_end'>"</span></span><span class='rparen'>)</span>
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<span class='id identifier rubyid_champion'>champion</span> <span class='op'>=</span> <span class='const'>YourEvolvable</span><span class='period'>.</span><span class='id identifier rubyid_new_evolvable'>new_evolvable</span>
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<span class='id identifier rubyid_champion'>champion</span><span class='period'>.</span><span class='id identifier rubyid_load_genome'>load_genome</span><span class='lparen'>(</span><span class='id identifier rubyid_raw'>raw</span><span class='rparen'>)</span>
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</code></pre>
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<pre class="code"><span class="info file"># File 'lib/evolvable/serializer.rb', line 52</span>
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<span class='kw'>def</span> <span class='id identifier rubyid_dump'>dump</span><span class='lparen'>(</span><span class='id identifier rubyid_data'>data</span><span class='rparen'>)</span>
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<div id="content"><h1>Class: Evolvable::UniformCrossover
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<p>Chooses genes independently at each position, selecting randomly from either
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parent with equal probability. No segments are preserved—each gene is treated
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in isolation.</p>
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<p>Uniform crossover is especially effective when good traits are scattered across the genome.</p>
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<p>Set your population to use this strategy during initialization with:</p>
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<pre class="code ruby"><code class="ruby"><span class='id identifier rubyid_population'>population</span> <span class='op'>=</span> <span class='const'>MyEvolvable</span><span class='period'>.</span><span class='id identifier rubyid_new_population'>new_population</span><span class='lparen'>(</span>
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<span class='label'>combination:</span> <span class='const'><span class='object_link'><a href="../Evolvable.html" title="Evolvable (module)">Evolvable</a></span></span><span class='op'>::</span><span class='const'>UniformCrossover</span><span class='period'>.</span><span class='id identifier rubyid_new'>new</span>
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<p>Or update an existing population:</p>
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<pre class="code ruby"><code class="ruby"><span class='id identifier rubyid_population'>population</span><span class='period'>.</span><span class='id identifier rubyid_combination'>combination</span> <span class='op'>=</span> <span class='const'><span class='object_link'><a href="../Evolvable.html" title="Evolvable (module)">Evolvable</a></span></span><span class='op'>::</span><span class='const'>UniformCrossover</span><span class='period'>.</span><span class='id identifier rubyid_new'>new</span>
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<pre class="code"><span class="info file"># File 'lib/evolvable/uniform_crossover.rb', line 32</span>
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<span class='kw'>def</span> <span class='id identifier rubyid_call'>call</span><span class='lparen'>(</span><span class='id identifier rubyid_population'>population</span><span class='rparen'>)</span>
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<span class='id identifier rubyid_population'>population</span><span class='period'>.</span><span class='id identifier rubyid_evolvables'>evolvables</span> <span class='op'>=</span> <span class='id identifier rubyid_new_evolvables'>new_evolvables</span><span class='lparen'>(</span><span class='id identifier rubyid_population'>population</span><span class='comma'>,</span> <span class='id identifier rubyid_population'>population</span><span class='period'>.</span><span class='id identifier rubyid_size'>size</span><span class='rparen'>)</span>
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<pre class="code"><span class="info file"># File 'lib/evolvable/uniform_crossover.rb', line 37</span>
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<span class='kw'>def</span> <span class='id identifier rubyid_new_evolvables'>new_evolvables</span><span class='lparen'>(</span><span class='id identifier rubyid_population'>population</span><span class='comma'>,</span> <span class='id identifier rubyid_count'>count</span><span class='rparen'>)</span>
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<span class='id identifier rubyid_parent_genome_cycle'>parent_genome_cycle</span> <span class='op'>=</span> <span class='id identifier rubyid_population'>population</span><span class='period'>.</span><span class='id identifier rubyid_new_parent_genome_cycle'>new_parent_genome_cycle</span>
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<span class='id identifier rubyid_population'>population</span><span class='period'>.</span><span class='id identifier rubyid_new_evolvable'>new_evolvable</span><span class='lparen'>(</span><span class='label'>genome:</span> <span class='id identifier rubyid_genome'>genome</span><span class='rparen'>)</span>
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