datalog-theme 0.7.0 → 0.9.0

This diff represents the content of publicly available package versions that have been released to one of the supported registries. The information contained in this diff is provided for informational purposes only and reflects changes between package versions as they appear in their respective public registries.
Files changed (203) hide show
  1. checksums.yaml +4 -4
  2. data/CHANGELOG.md +188 -0
  3. data/CITATION.cff +2 -2
  4. data/README.md +25 -17
  5. data/_data/cdn-integrity.yml +0 -30
  6. data/_data/i18n/en.yml +297 -0
  7. data/_data/i18n/es.yml +297 -0
  8. data/_data/i18n/pt.yml +297 -0
  9. data/_data/js_manifest.json +16 -0
  10. data/_includes/analytics/dashboard.html +3 -1
  11. data/_includes/components/api-function.html +20 -1
  12. data/_includes/components/author-bio.html +21 -11
  13. data/_includes/components/author-list.html +32 -0
  14. data/_includes/components/citation-tools.html +33 -25
  15. data/_includes/components/comments-thread.html +90 -0
  16. data/_includes/components/contact-form.html +120 -0
  17. data/_includes/components/correction-report.html +82 -0
  18. data/_includes/components/enhanced-code-block.html +1 -1
  19. data/_includes/components/enhanced-toc.html +6 -7
  20. data/_includes/components/license-link.html +13 -0
  21. data/_includes/components/license-notice.html +28 -0
  22. data/_includes/components/moderation-inbox.html +139 -0
  23. data/_includes/components/reactions.html +49 -0
  24. data/_includes/components/reading-list.html +31 -0
  25. data/_includes/components/reading-mode-toggle.html +65 -0
  26. data/_includes/components/reading-state-bookmark.html +27 -0
  27. data/_includes/components/reading-state-panel.html +71 -0
  28. data/_includes/components/reproducibility.html +61 -0
  29. data/_includes/components/responsive-image.html +3 -3
  30. data/_includes/components/revision-history.html +39 -0
  31. data/_includes/components/revision-notice.html +35 -0
  32. data/_includes/components/series-nav.html +64 -0
  33. data/_includes/components/subscribe-form.html +88 -0
  34. data/_includes/components/subscription-manage.html +68 -0
  35. data/_includes/components/webmentions.html +48 -0
  36. data/_includes/csp-meta.html +135 -11
  37. data/_includes/footer.html +22 -20
  38. data/_includes/head.html +111 -63
  39. data/_includes/header/navigation.html +12 -15
  40. data/_includes/header.html +28 -19
  41. data/_includes/layouts/default/article.html +9 -7
  42. data/_includes/meta/dynamic-services-config.html +14 -0
  43. data/_includes/meta/math-config.html +18 -10
  44. data/_includes/meta/person-json.html +27 -0
  45. data/_includes/meta/publisher.html +45 -0
  46. data/_includes/meta/schema.html +67 -30
  47. data/_includes/meta/scholarly.html +121 -0
  48. data/_includes/meta/scripts-loader.html +18 -32
  49. data/_includes/meta/webmention-discovery.html +14 -0
  50. data/_includes/post/related-posts.html +4 -7
  51. data/_includes/scripts.html +57 -0
  52. data/_includes/search/index-data.json +9 -34
  53. data/_layouts/dataset.html +5 -3
  54. data/_layouts/default.html +16 -8
  55. data/_layouts/notebook.html +1 -0
  56. data/_layouts/package.html +4 -2
  57. data/_layouts/page.html +15 -0
  58. data/_layouts/portfolio.html +1 -0
  59. data/_layouts/post.html +102 -23
  60. data/_layouts/project.html +4 -3
  61. data/_layouts/research.html +20 -8
  62. data/_plugins/analytics_dashboard.rb +9 -3
  63. data/_plugins/authors.rb +133 -0
  64. data/_plugins/config_validator.rb +231 -23
  65. data/_plugins/critical_css_check.rb +42 -0
  66. data/_plugins/csp_generator.rb +18 -28
  67. data/_plugins/datalog_bibliography.rb +9 -7
  68. data/_plugins/datalog_comments.rb +8 -5
  69. data/_plugins/datalog_slides.rb +9 -8
  70. data/_plugins/i18n.rb +13 -12
  71. data/_plugins/image_optimizer.rb +241 -178
  72. data/_plugins/licenses.rb +135 -0
  73. data/_plugins/math_preprocessor.rb +59 -7
  74. data/_plugins/notebook_converter.rb +23 -4
  75. data/_plugins/plugin_loader.rb +3 -1
  76. data/_plugins/publications_generator.rb +8 -2
  77. data/_plugins/references.rb +238 -0
  78. data/_plugins/reproducibility.rb +150 -0
  79. data/_plugins/revisions.rb +101 -0
  80. data/_plugins/rouge_highlight_filter.rb +42 -0
  81. data/_plugins/scholarly.rb +50 -0
  82. data/_plugins/search_code_blocks.rb +30 -0
  83. data/_plugins/search_normalizer.rb +15 -53
  84. data/_plugins/search_pages.rb +3 -4
  85. data/_plugins/series.rb +104 -0
  86. data/_plugins/statements.rb +87 -0
  87. data/_sass/_academic-dashboard.scss +262 -0
  88. data/_sass/_base.scss +20 -1
  89. data/_sass/_comments-thread.scss +159 -0
  90. data/_sass/_components.scss +64 -1153
  91. data/_sass/_features.scss +17 -0
  92. data/_sass/_layout.scss +385 -1
  93. data/_sass/_mathematical.scss +27 -0
  94. data/_sass/_moderation.scss +222 -0
  95. data/_sass/_notebooks.scss +322 -0
  96. data/_sass/_open-science-badges.scss +56 -0
  97. data/_sass/{_phase1-enhancements.scss → _post-components.scss} +5 -3
  98. data/_sass/_print.scss +291 -0
  99. data/_sass/_reactions.scss +89 -0
  100. data/_sass/_reading-state.scss +290 -0
  101. data/_sass/_search-page.scss +530 -0
  102. data/_sass/_search.scss +46 -0
  103. data/_sass/_service-forms.scss +204 -0
  104. data/_sass/_subscriptions.scss +140 -0
  105. data/_sass/_syntax-highlighting.scss +212 -97
  106. data/_sass/_theme.scss +40 -19
  107. data/_sass/_typography.scss +130 -0
  108. data/_sass/_utilities.scss +5 -0
  109. data/_sass/_variables.scss +6 -0
  110. data/_sass/_webmentions.scss +125 -0
  111. data/assets/css/main.scss +14 -0
  112. data/assets/js/dist/academic.js +1 -1
  113. data/assets/js/dist/analytics-dashboard.js +1 -1
  114. data/assets/js/dist/chunks/chunk-2DYDWUFX.js +1 -0
  115. data/assets/js/dist/chunks/chunk-PATLC23F.js +1 -0
  116. data/assets/js/dist/chunks/chunk-V7734B2G.js +1 -0
  117. data/assets/js/dist/comments.js +2 -0
  118. data/assets/js/dist/contact.js +1 -0
  119. data/assets/js/dist/core.js +1 -1
  120. data/assets/js/dist/corrections.js +1 -0
  121. data/assets/js/dist/loader.js +1 -1
  122. data/assets/js/dist/math.js +1 -1
  123. data/assets/js/dist/moderation.js +1 -0
  124. data/assets/js/dist/notebook.js +1 -1
  125. data/assets/js/dist/reactions.js +1 -0
  126. data/assets/js/dist/reading-state.js +1 -0
  127. data/assets/js/dist/search.js +1 -1
  128. data/assets/js/dist/sources.json +52 -0
  129. data/assets/js/dist/subscriptions.js +1 -0
  130. data/assets/js/dist/visualizations.js +11 -2
  131. data/assets/js/dist/webmentions.js +1 -0
  132. data/assets/js/loader.js +37 -1
  133. data/datalog-theme.gemspec +35 -23
  134. data/lib/datalog/cli.rb +43 -15
  135. data/lib/datalog/critical_css.rb +168 -0
  136. data/lib/datalog/plugin_system/dependency_resolver.rb +0 -2
  137. data/lib/datalog/plugins/comments.rb +33 -3
  138. data/lib/datalog/theme/installed_files.rb +113 -0
  139. data/lib/datalog/theme/package.rb +57 -0
  140. data/lib/datalog/theme/repository_checkout.rb +94 -0
  141. data/lib/datalog/theme/version.rb +5 -1
  142. data/lib/datalog/warning_filter.rb +5 -11
  143. data/lib/datalog-theme.rb +6 -0
  144. metadata +96 -147
  145. data/_data/academic.yml +0 -217
  146. data/_data/config/author.yml +0 -121
  147. data/_data/datasets.yml +0 -28
  148. data/_data/js_meta.json +0 -371
  149. data/_data/navigation.yml +0 -145
  150. data/_data/projects.yml +0 -41
  151. data/_data/publications.yml +0 -28
  152. data/_data/social.yml +0 -73
  153. data/_data/visualizations.yml +0 -51
  154. data/_includes/components/advanced-search.html +0 -682
  155. data/_includes/components/bookmark-system.html +0 -96
  156. data/_includes/components/comments.html +0 -244
  157. data/_includes/components/content-recommendations.html +0 -228
  158. data/_includes/components/email-preferences.html +0 -200
  159. data/_includes/components/enhanced-metadata.html +0 -228
  160. data/_includes/components/language-switcher.html +0 -396
  161. data/_includes/components/navigation-enhancements.html +0 -454
  162. data/_includes/components/newsletter-signup.html +0 -178
  163. data/_includes/components/popular-posts.html +0 -233
  164. data/_includes/components/reading-progress.html +0 -133
  165. data/_includes/components/reading-time.html +0 -121
  166. data/_includes/components/series-navigation.html +0 -124
  167. data/_includes/components/social-proof.html +0 -34
  168. data/_includes/components/user-preferences.html +0 -566
  169. data/_includes/meta/syntax-config.html +0 -19
  170. data/_layouts/archive.html +0 -282
  171. data/_layouts/post-sidebar.html +0 -183
  172. data/_sass/_phase3-enhancements.scss +0 -874
  173. data/_sass/_phase4-enhancements.scss +0 -1214
  174. data/_sass/_phase5-enhancements.scss +0 -414
  175. data/assets/js/academic.js +0 -262
  176. data/assets/js/analytics-dashboard.js +0 -382
  177. data/assets/js/core/dark-mode.js +0 -79
  178. data/assets/js/core/github-cards.js +0 -123
  179. data/assets/js/core/language-filter.js +0 -69
  180. data/assets/js/core/navigation.js +0 -184
  181. data/assets/js/core/scroll-progress.js +0 -45
  182. data/assets/js/core/search-hotkeys.js +0 -62
  183. data/assets/js/core/skip-links.js +0 -62
  184. data/assets/js/dist/manifest.json +0 -22
  185. data/assets/js/dist/meta.json +0 -371
  186. data/assets/js/main.js +0 -23
  187. data/assets/js/math.js +0 -818
  188. data/assets/js/notebook.js +0 -158
  189. data/assets/js/search/analytics.js +0 -91
  190. data/assets/js/search/app.js +0 -271
  191. data/assets/js/search/autocomplete.js +0 -120
  192. data/assets/js/search/engine.js +0 -260
  193. data/assets/js/search/filters.js +0 -45
  194. data/assets/js/search/render.js +0 -217
  195. data/assets/js/search/utils.js +0 -99
  196. data/assets/js/search.js +0 -354
  197. data/assets/js/visualizations.js +0 -816
  198. data/assets/publications/datalog-publications.bib +0 -8
  199. data/assets/publications/datalog-publications.ris +0 -9
  200. data/assets/publications/publications.bib +0 -30
  201. data/assets/templates/diogo-ribeiro-cv.md +0 -31
  202. data/assets/templates/diogo-ribeiro-cv.tex +0 -32
  203. data/lib/datalog/theme/theme.rb +0 -18
data/_data/academic.yml DELETED
@@ -1,217 +0,0 @@
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- profiles:
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- google_scholar:
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- label: "Google Scholar"
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- url: "https://scholar.google.com/citations?user=example"
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- user_id: "example"
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- last_synced: "2024-03-01"
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- auto_update: true
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- orcid:
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- label: "ORCID"
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- url: "https://orcid.org/0009-0001-2022-7072"
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- sync:
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- enabled: true
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- last_synced: "2024-03-01"
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- scope:
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- - "funding"
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- - "works"
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- - "peer-review"
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- researchgate:
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- label: "ResearchGate"
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- url: "https://www.researchgate.net/profile/Diogo-Ribeiro"
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- projects:
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- - "Predictive Energy Demand Modeling"
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- - "Open Visualization Systems"
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- academia:
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- label: "Academia.edu"
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- url: "https://www.academia.edu"
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- collections:
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- - "Reproducible Analytics Playbook"
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- - "Teaching Portfolio"
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-
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- citations:
32
- reporting_period: "2024"
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- metrics:
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- total: 245
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- h_index: 9
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- i10_index: 12
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- since_2019:
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- total: 210
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- h_index: 8
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- i10_index: 11
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- per_publication:
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- datalog2024:
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- total: 37
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- last_updated: "2024-02-01"
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- open_science2023:
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- total: 64
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- last_updated: "2024-01-12"
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- accessible_viz2022:
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- total: 48
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- last_updated: "2023-11-30"
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- yearly_totals:
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- "2019": 12
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- "2020": 24
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- "2021": 38
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- "2022": 51
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- "2023": 62
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- "2024": 58
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-
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- bibliography:
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- preferred_style: "apa"
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- exports:
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- - format: "bibtex"
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- filename: "datalog-publications.bib"
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- - format: "ris"
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- filename: "datalog-publications.ris"
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-
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- submissions:
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- - title: "Hierarchical Forecasting under Climate Volatility"
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- venue: "International Conference on Smart Energy Systems"
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- type: "conference"
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- deadline: "2024-04-15"
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- status: "In review"
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- submitted: "2024-03-18"
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- collaborators:
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- - "Ana Silva"
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- - "Hugo Martins"
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- notes: "Awaiting reviewer assignment."
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- - title: "Accessible Visualization Platforms for Civic Data"
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- venue: "Journal of Open Visualization Research"
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- type: "journal"
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- deadline: "2024-05-10"
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- status: "Drafting"
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- submitted: ~
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- collaborators:
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- - "Rita Almeida"
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- notes: "Finalizing reproducibility appendix."
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- - title: "Open Science Practices for Applied Analytics Teams"
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- venue: "ReScience C"
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- type: "journal"
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- deadline: "2024-06-01"
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- status: "Revision requested"
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- submitted: "2024-02-07"
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- collaborators:
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- - "João Santos"
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- notes: "Address reviewer feedback on dataset licensing section."
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-
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- workflow:
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- peer_review:
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- - title: "Bayesian Hierarchical Modeling for Energy Demand"
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- journal: "Journal of Sustainable Analytics"
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- status: "Reviewer invited"
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- assigned_date: "2024-03-02"
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- due_date: "2024-03-30"
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- notes: "Emphasize reproducibility checklist in review."
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- - title: "Robust Visualization Evaluation Metrics"
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- journal: "VIS4GOOD Proceedings"
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- status: "Completed"
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- assigned_date: "2024-01-12"
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- due_date: "2024-02-05"
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- notes: "Submitted structured review with replication package checklist."
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- collaborations:
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- - name: "Climate Resilience Analytics Consortium"
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- role: "Co-investigator"
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- stage: "Proposal development"
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- contact: "consortium@climateanalytics.org"
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- notes: "Coordinate dataset harmonization workshop."
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- - name: "EU Data Stories Mentorship Program"
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- role: "Mentor"
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- stage: "Active"
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- contact: "mentorship@eudatastories.eu"
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- notes: "Monthly office hours supporting reproducible storytelling."
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-
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- calendar:
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- description: "Upcoming academic commitments, conferences, and submission deadlines."
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- events:
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- - name: "Smart Energy Systems Conference"
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- type: "conference"
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- start_date: "2024-07-10"
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- end_date: "2024-07-13"
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- location: "Copenhagen, Denmark"
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- submission_deadline: "2024-04-15"
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- - name: "Data Visualization for Social Good Workshop"
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- type: "workshop"
134
- start_date: "2024-05-28"
135
- end_date: "2024-05-29"
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- location: "Porto, Portugal"
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- submission_deadline: "2024-04-01"
138
- - name: "ReScience C Special Issue Deadline"
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- type: "journal"
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- start_date: "2024-06-01"
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- end_date: "2024-06-01"
142
- location: "Remote"
143
- submission_deadline: "2024-06-01"
144
- - name: "Horizon Europe Call: Digital Resilience"
145
- type: "funding"
146
- start_date: "2024-09-05"
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- end_date: "2024-09-05"
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- location: "Brussels, Belgium"
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- submission_deadline: "2024-09-05"
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-
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- funding:
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- - title: "Horizon Europe Digital Resilience Pilot"
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- agency: "European Commission"
154
- amount: "€450,000"
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- role: "Co-PI"
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- status: "Under consideration"
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- deadline: "2024-09-05"
158
- focus: "Building reproducible analytics infrastructure for climate resilience."
159
- - title: "National Science Foundation Data Literacy Grant"
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- agency: "NSF"
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- amount: "$120,000"
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- role: "Senior Personnel"
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- status: "Awarded"
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- period: "2023-2025"
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- focus: "Mentorship and curriculum development for applied data science."
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-
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- collaboration_opportunities:
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- - title: "Reproducible Energy Benchmarking Collective"
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- description: "Seeking partners to contribute datasets and evaluation metrics for open benchmarking of energy demand models."
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- contact: "reproducibility@datalog.dev"
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- tags:
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- - "energy"
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- - "reproducibility"
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- - "benchmarking"
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- - title: "Civic Data Visualization Fellows"
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- description: "Recruiting designers and analysts to co-create accessible dashboards for public policy audiences."
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- contact: "vizfellows@datalog.dev"
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- tags:
179
- - "visualization"
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- - "accessibility"
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- - "civic-tech"
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-
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- mentorship:
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- - program: "Applied Data Science Residency"
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- offering: "6-week guided mentorship on experiment design and reporting."
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- cohorts: "Spring, Autumn"
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- application_deadline: "2024-04-30"
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- contact: "mentorship@datalog.dev"
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- - program: "Open Science Clinic"
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- offering: "Drop-in sessions for reproducibility audits and tooling support."
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- schedule: "Monthly (first Thursday)"
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- contact: "openscience@datalog.dev"
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-
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- badges:
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- - label: "Open Data"
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- description: "Dataset and code repository published with permissive license."
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- criteria: "Public repository, DOI issued, README with reproduction steps."
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- - label: "Reproducible Workflow"
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- description: "Containerized environment and automated tests provided."
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- criteria: "Continuous integration pipeline with reproducibility checks."
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- - label: "Transparent Peer Review"
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- description: "Peer review reports archived with DOI and linked to article."
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- criteria: "Open peer review statement and archived reports on Zenodo."
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-
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- networking:
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- platforms:
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- - name: "IEEE Data Science Community"
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- role: "Member"
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- url: "https://datascience.ieee.org"
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- - name: "Lisbon Data Science Meetup"
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- role: "Organizer"
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- url: "https://www.meetup.com/lisbon-data-science"
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- mentorship_channels:
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- - channel: "Slack"
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- description: "Private workspace for mentee discussions and resource sharing."
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- - channel: "Office hours"
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- description: "Bi-weekly Zoom sessions focused on paper feedback and reproducibility planning."
@@ -1,121 +0,0 @@
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- # =============================================================================
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- # Author Configuration
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- # =============================================================================
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- # Your personal/professional information displayed throughout the site.
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- # This information appears in author bios, citations, and metadata.
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- #
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- # Documentation: https://github.com/DiogoRibeiro7/analytics-blog-jekyll/docs/configuration.md
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- # =============================================================================
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-
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- # Basic information
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- name: Diogo Ribeiro
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- title: Data Scientist
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- affiliation: ESMAD - Instituto Politécnico do Porto
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- location: Porto, Portugal
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- email: dfr@esmad.ipp.pt
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- professional_email: dfr@esmad.ipp.pt
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- photo: # e.g. /assets/img/author-photo.jpg once the file exists; leave unset for the initial-letter placeholder
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-
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- # Biography
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- biography: >
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- Data Scientist and researcher specializing in predictive modeling,
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- statistical analysis, and reproducible analytics. Passionate about
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- turning complex data into actionable insights and building open-source
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- tools for the data science community.
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-
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- # Extended bio for the author page
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- bio_extended: >
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- With a background in data science and multimedia technology, I work at the
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- intersection of statistical modeling, machine learning, and data storytelling.
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- My research focuses on building reproducible analytics pipelines, probabilistic
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- forecasting for critical infrastructure, and accessible visualization systems
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- that bridge the gap between quantitative insights and decision-making.
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-
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- # Skills & expertise
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- skills:
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- languages:
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- - Python
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- - R
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- - SQL
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- - Julia
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- - JavaScript
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- frameworks:
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- - scikit-learn
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- - TensorFlow
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- - PyTorch
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- - pandas
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- - tidyverse
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- - Plotly
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- - D3.js
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- tools:
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- - Jupyter
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- - Docker
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- - Git
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- - MLflow
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- - DuckDB
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- - PostgreSQL
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- domains:
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- - Predictive Modeling
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- - Time Series Forecasting
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- - Experimental Design
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- - Bayesian Statistics
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- - Natural Language Processing
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- - Data Visualization
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-
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- # Education
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- education:
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- - degree: MSc in Data Science
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- institution: ESMAD - Instituto Politécnico do Porto
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- year: 2020
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- - degree: BSc in Multimedia Technology
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- institution: ESMAD - Instituto Politécnico do Porto
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- year: 2018
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-
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- # Experience highlights
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- experience:
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- - role: Data Scientist & Researcher
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- organization: ESMAD - Instituto Politécnico do Porto
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- period: 2020 — present
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- description: Leading research in predictive analytics, energy demand forecasting, and open science methodologies.
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- - role: Visiting Researcher
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- organization: Centre for Applied AI
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- period: 2022 — present
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- description: Collaborative research on accessible visualization platforms and reproducible ML pipelines.
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-
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- # Academic/Professional profiles
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- profiles:
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- orcid: https://orcid.org/0009-0001-2022-7072
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- github: DiogoRibeiro7
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- twitter: DiogoRibeiro7
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- linkedin: diogoribeiro
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- kaggle: diogoribeiro
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- google_scholar: "" # Optional: Add your Google Scholar profile URL
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- researchgate: https://www.researchgate.net/profile/Diogo-Ribeiro
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- academia: https://www.academia.edu
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-
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- # Research focus areas (displayed in author cards and used for content filtering)
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- research_areas:
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- - id: machine-learning
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- title: Machine Learning
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- url: /tags/#machine-learning
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- - id: statistics
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- title: Statistics
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- url: /tags/#statistics
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- - id: visualization
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- title: Data Visualization
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- url: /tags/#visualization
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- - id: reproducibility
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- title: Reproducible Research
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- url: /tags/#reproducibility
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-
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- # Methodologies you use (displayed in author cards)
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- methodologies:
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- - id: experimental-design
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- title: Experimental Design
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- url: /tags/#experimental-design
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- - id: bayesian
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- title: Bayesian Modeling
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- url: /tags/#bayesian
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- - id: eda
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- title: Exploratory Data Analysis
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- url: /tags/#eda
data/_data/datasets.yml DELETED
@@ -1,28 +0,0 @@
1
- collections:
2
- - id: urban-energy
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- title: Urban Energy Usage Benchmark
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- description: Smart meter and weather aligned dataset for forecasting tasks.
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- license: CC-BY-4.0
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- tags:
7
- - energy
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- - time-series
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- - forecasting
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- source_url: https://example.com/datasets/urban-energy
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- documentation: /datasets/sample-dataset/
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- update_frequency: quarterly
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- - id: mobility-sensing
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- title: Mobility Sensing Signals
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- description: Multimodal mobility traces with aggregated privacy-preserving features.
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- license: CC-BY-SA-4.0
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- tags:
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- - mobility
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- - sensors
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- - anomaly-detection
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- source_url: https://example.com/datasets/mobility
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- documentation: /datasets/
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- update_frequency: annually
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-
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- preferences:
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- availability_statement: "Datasets include licensing, provenance, update cadence, and recommended citation language."
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- download_button: true
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- badge_style: outlined