daru 0.1.5 → 0.1.6
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- checksums.yaml +4 -4
- data/.rubocop.yml +20 -7
- data/CONTRIBUTING.md +1 -1
- data/History.md +48 -1
- data/README.md +3 -3
- data/benchmarks/statistics.rb +6 -6
- data/benchmarks/where_clause.rb +1 -1
- data/benchmarks/where_vs_filter.rb +1 -1
- data/daru.gemspec +3 -2
- data/lib/daru.rb +14 -6
- data/lib/daru/accessors/gsl_wrapper.rb +1 -1
- data/lib/daru/accessors/nmatrix_wrapper.rb +2 -0
- data/lib/daru/category.rb +1 -1
- data/lib/daru/core/group_by.rb +32 -15
- data/lib/daru/core/query.rb +4 -4
- data/lib/daru/dataframe.rb +196 -48
- data/lib/daru/date_time/index.rb +7 -5
- data/lib/daru/formatters/table.rb +1 -0
- data/lib/daru/index/index.rb +121 -33
- data/lib/daru/index/multi_index.rb +83 -3
- data/lib/daru/io/csv/converters.rb +18 -0
- data/lib/daru/io/io.rb +80 -11
- data/lib/daru/io/sql_data_source.rb +10 -0
- data/lib/daru/iruby/templates/dataframe.html.erb +3 -50
- data/lib/daru/iruby/templates/dataframe_mi.html.erb +3 -56
- data/lib/daru/iruby/templates/dataframe_mi_tbody.html.erb +35 -0
- data/lib/daru/iruby/templates/dataframe_mi_thead.html.erb +21 -0
- data/lib/daru/iruby/templates/dataframe_tbody.html.erb +28 -0
- data/lib/daru/iruby/templates/dataframe_thead.html.erb +21 -0
- data/lib/daru/iruby/templates/vector.html.erb +3 -25
- data/lib/daru/iruby/templates/vector_mi.html.erb +3 -34
- data/lib/daru/iruby/templates/vector_mi_tbody.html.erb +26 -0
- data/lib/daru/iruby/templates/vector_mi_thead.html.erb +8 -0
- data/lib/daru/iruby/templates/vector_tbody.html.erb +17 -0
- data/lib/daru/iruby/templates/vector_thead.html.erb +8 -0
- data/lib/daru/maths/statistics/dataframe.rb +9 -11
- data/lib/daru/maths/statistics/vector.rb +139 -32
- data/lib/daru/plotting/gruff/dataframe.rb +13 -15
- data/lib/daru/plotting/nyaplot/category.rb +1 -1
- data/lib/daru/plotting/nyaplot/dataframe.rb +4 -4
- data/lib/daru/plotting/nyaplot/vector.rb +1 -2
- data/lib/daru/vector.rb +169 -80
- data/lib/daru/version.rb +1 -1
- data/spec/category_spec.rb +19 -19
- data/spec/core/group_by_spec.rb +47 -0
- data/spec/core/query_spec.rb +55 -50
- data/spec/daru_spec.rb +22 -0
- data/spec/dataframe_spec.rb +118 -6
- data/spec/date_time/index_spec.rb +34 -16
- data/spec/extensions/rserve_spec.rb +1 -1
- data/spec/fixtures/boolean_converter_test.csv +5 -0
- data/spec/fixtures/eciresults.html +394 -0
- data/spec/fixtures/empty_rows_test.csv +17 -0
- data/spec/fixtures/macau.html +3691 -0
- data/spec/fixtures/macd_data.csv +150 -0
- data/spec/fixtures/moneycontrol.html +6812 -0
- data/spec/fixtures/url_test.txt~ +0 -0
- data/spec/fixtures/valid_markup.html +62 -0
- data/spec/fixtures/wiki_climate.html +1243 -0
- data/spec/fixtures/wiki_table_info.html +631 -0
- data/spec/formatters/table_formatter_spec.rb +29 -0
- data/spec/index/categorical_index_spec.rb +33 -33
- data/spec/index/index_spec.rb +134 -41
- data/spec/index/multi_index_spec.rb +115 -31
- data/spec/io/io_spec.rb +201 -0
- data/spec/io/sql_data_source_spec.rb +31 -41
- data/spec/iruby/dataframe_spec.rb +17 -19
- data/spec/iruby/vector_spec.rb +26 -28
- data/spec/maths/statistics/vector_spec.rb +136 -14
- data/spec/plotting/gruff/category_spec.rb +3 -3
- data/spec/plotting/gruff/dataframe_spec.rb +14 -4
- data/spec/plotting/gruff/vector_spec.rb +9 -9
- data/spec/plotting/nyaplot/category_spec.rb +5 -9
- data/spec/plotting/nyaplot/dataframe_spec.rb +72 -47
- data/spec/plotting/nyaplot/vector_spec.rb +5 -11
- data/spec/shared/vector_display_spec.rb +12 -14
- data/spec/spec_helper.rb +21 -0
- data/spec/support/matchers.rb +5 -0
- data/spec/vector_spec.rb +222 -72
- metadata +68 -23
- data/spec/fixtures/stock_data.csv +0 -500
@@ -5,62 +5,52 @@ require 'active_record'
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RSpec.describe Daru::IO::SqlDataSource do
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include_context 'with accounts table in sqlite3 database'
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-
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let(:query) do
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'select * from accounts'
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end
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let(:
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let(:source) do
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ActiveRecord::Base.establish_connection("sqlite3:#{db_name}")
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ActiveRecord::Base.connection
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end
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let(:query) do
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'select * from accounts'
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end
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describe '.make_dataframe' do
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it 'returns a dataframe' do
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result = Daru::IO::SqlDataSource.make_dataframe(dbi_handle, query)
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expect(result).to be_a(Daru::DataFrame)
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expect(result.nrows).to eq(2)
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expect(result.row[0][:id]).to eq(1)
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expect(result.row[0][:name]).to eq('Homer')
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end
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subject(:df) { Daru::IO::SqlDataSource.make_dataframe(source, query) }
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end
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end
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context 'with DBI::DatabaseHandle' do
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let(:source) { DBI.connect("DBI:SQLite3:#{db_name}") }
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it { is_expected.to be_a(Daru::DataFrame) }
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it { expect(df.row[0]).to have_attributes(id: 1, age: 20) }
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its(:nrows) { is_expected.to eq 2 }
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end
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context 'with ActiveRecord::Connection' do
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it
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expect(result.row[0][:id]).to eq(1)
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expect(result.row[0][:name]).to eq('Homer')
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end
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it { is_expected.to be_a(Daru::DataFrame) }
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it { expect(df.row[0]).to have_attributes(id: 1, age: 20) }
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its(:nrows) { is_expected.to eq 2 }
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end
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context 'with path to sqlite3 file' do
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let(:source) { db_name }
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it { is_expected.to be_a(Daru::DataFrame) }
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it { expect(df.row[0]).to have_attributes(id: 1, age: 20) }
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its(:nrows) { is_expected.to eq 2 }
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end
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context 'with an object not a string as a query' do
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let(:query) { Object.new }
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it { expect { df }.to raise_error(ArgumentError) }
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end
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context 'with an object not a database connection' do
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let(:source) { Object.new }
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it { expect { df }.to raise_error(ArgumentError) }
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end
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context 'with path to unsupported db file' do
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let(:source) { 'spec/fixtures/bank2.dat' }
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it { expect { df }.to raise_error(ArgumentError) }
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end
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end
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end
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describe Daru::DataFrame, '#to_html' do
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let(:doc) { Nokogiri::HTML(df.to_html) }
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subject(:table) { doc.at('table') }
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let(:header) {
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let(:header) { doc.at('b')}
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let(:name) { 'test' }
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let(:splitted_row) { row.inner_html.scan(/<t[dh].+?<\/t[dh]>/) }
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subject { header }
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it { is_expected.not_to be_nil }
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its(
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its(:text) { is_expected.to eq "Daru::DataFrame: test (3x3)" }
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its(:text) { is_expected.to eq " Daru::DataFrame: test (3x3) " }
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context 'without name' do
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let(:name) { nil }
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its(:text) { is_expected.to eq "Daru::DataFrame(3x3)" }
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its(:text) { is_expected.to eq " Daru::DataFrame(3x3) " }
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end
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end
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describe 'column headers' do
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subject(:columns) { table.search('tr:nth-child(
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subject(:columns) { table.search('tr:nth-child(1) th').map(&:text) }
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its(:size) { is_expected.to eq df.ncols + 1 }
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it { is_expected.to eq ['', 'a', 'b', 'c'] }
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end
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subject { splitted_row }
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describe 'first row' do
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let(:row) { table.search('tr:nth-child(
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let(:row) { table.search('thead > tr:nth-child(1)') }
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it { is_expected.to eq [
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'<th rowspan="2"></th>',
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end
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describe 'next row' do
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let(:row) { table.search('tr:nth-child(
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let(:row) { table.search('thead > tr:nth-child(2)') }
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it { is_expected.to eq [
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'<th colspan="1">foo</th>',
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describe 'values' do
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subject(:values) {
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table.search('tr')[
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table.search('tr')[1..-1]
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.map { |tr| tr.search('td')[1..-1].map(&:text) }
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}
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its(:count) { is_expected.to eq df.nrows }
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describe 'header' do
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subject { header }
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its(:text) { is_expected.to eq "Daru::DataFrame: test (300x3)" }
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its(:text) { is_expected.to eq " Daru::DataFrame: test (300x3) " }
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end
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it 'has only 30 rows (+
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expect(table.search('tr').size).to eq
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it 'has only 30 rows (+ 1 header rows, + 2 finishing rows)' do
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expect(table.search('tr').size).to eq 33
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end
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describe '"skipped" row' do
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subject(:row) { table.search('tr:nth-child(
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subject(:row) { table.search('tr:nth-child(31) td').map(&:text) }
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its(:count) { is_expected.to eq df.ncols + 1 }
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it { is_expected.to all eq '...' }
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end
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describe 'last row' do
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subject(:row) { table.search('tr:nth-child(
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subject(:row) { table.search('tr:nth-child(32) td').map(&:text) }
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its(:count) { is_expected.to eq df.ncols + 1 }
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it { is_expected.to eq ['299', *df.row[-1].map(&:to_s)] }
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end
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subject { header }
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it { is_expected.not_to be_nil }
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its(
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its(:text) { is_expected.to eq "Daru::DataFrame: test (7x2)" }
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its(:text) { is_expected.to eq " Daru::DataFrame: test (7x2) " }
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end
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describe 'column headers' do
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let(:row) { table.search('tr:nth-child(
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let(:row) { table.search('thead > tr:nth-child(1)') }
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subject { splitted_row }
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it { is_expected.to eq [
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subject { splitted_row }
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describe 'first row' do
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let(:row) { table.search('tr:nth-child(
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let(:row) { table.search('thead > tr:nth-child(1)') }
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it { is_expected.to eq [
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'<th colspan="2" rowspan="2"></th>',
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end
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describe 'next row' do
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let(:row) { table.search('tr:nth-child(
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let(:row) { table.search('thead > tr:nth-child(2)') }
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it { is_expected.to eq [
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'<th colspan="1">foo</th>',
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end
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describe 'first row' do
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let(:row) { table.search('tr:nth-child(
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let(:row) { table.search('tbody > tr:nth-child(1)') }
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subject { splitted_row }
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it { is_expected.to eq [
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data/spec/iruby/vector_spec.rb
CHANGED
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[nil, :category].each do |type|
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let(:doc) { Nokogiri::HTML(vector.to_html) }
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subject(:table) { doc.at('table') }
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let(:header) {
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let(:header) { doc.at('b') }
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context 'simple' do
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let(:vector) { Daru::Vector.new [1,nil,3],
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index: [:a, :b, :c], name: 'test', type: type }
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it { is_expected.not_to be_nil }
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describe 'header' do
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subject { header }
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it { is_expected.not_to be_nil }
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its(
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-
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"#{":category" if type == :category}" }
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its(:text) { is_expected.to eq " Daru::Vector(3)"\
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"#{":category" if type == :category} " }
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end
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describe 'name' do
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subject(:name) { table.at('tr:nth-child(
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subject(:name) { table.at('tr:nth-child(1) > th:nth-child(2)') }
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it { is_expected.not_to be_nil }
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its(:text) { is_expected.to eq 'test' }
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context 'withought name' do
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let(:vector) { Daru::Vector.new [1,nil,3], index: [:a, :b, :c], type: type }
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it { is_expected.to be_nil }
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end
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end
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describe 'index' do
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subject(:indexes) { table.search('tr > td:first-child').map(&:text) }
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its(:count) { is_expected.to eq vector.size }
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it { is_expected.to eq vector.index.to_a.map(&:to_s) }
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end
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describe 'values' do
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subject(:indexes) { table.search('tr > td:last-child').map(&:text) }
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its(:count) { is_expected.to eq vector.size }
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it { is_expected.to eq vector.to_a.map(&:to_s) }
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end
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end
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context 'large vector' do
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subject(:vector) { Daru::Vector.new [1,2,3] * 100, name: 'test', type: type }
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it 'has only 30 rows (+
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expect(table.search('tr').size).to eq
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it 'has only 30 rows (+ 1 header rows, + 2 finishing rows)' do
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expect(table.search('tr').size).to eq 33
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end
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-
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+
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describe '"skipped" row' do
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subject(:row) { table.search('tr:nth-child(
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subject(:row) { table.search('tr:nth-child(31) td').map(&:text) }
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its(:count) { is_expected.to eq 2 }
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it { is_expected.to eq ['...', '...'] }
|
55
54
|
end
|
56
|
-
|
55
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+
|
57
56
|
describe 'last row' do
|
58
|
-
subject(:row) { table.search('tr:nth-child(
|
57
|
+
subject(:row) { table.search('tr:nth-child(32) td').map(&:text) }
|
59
58
|
its(:count) { is_expected.to eq 2 }
|
60
59
|
it { is_expected.to eq ['299', '3'] }
|
61
60
|
end
|
62
61
|
end
|
63
|
-
|
62
|
+
|
64
63
|
context 'multi-index' do
|
65
64
|
subject(:vector) {
|
66
65
|
Daru::Vector.new(
|
@@ -78,23 +77,22 @@ describe Daru::Vector, '#to_html' do
|
|
78
77
|
]),
|
79
78
|
)
|
80
79
|
}
|
81
|
-
|
80
|
+
|
82
81
|
describe 'header' do
|
83
82
|
subject { header }
|
84
83
|
it { is_expected.not_to be_nil }
|
85
|
-
its(
|
86
|
-
|
87
|
-
"#{":category" if type == :category}" }
|
84
|
+
its(:text) { is_expected.to eq " Daru::Vector(7)"\
|
85
|
+
"#{":category" if type == :category} " }
|
88
86
|
end
|
89
|
-
|
87
|
+
|
90
88
|
describe 'name row' do
|
91
|
-
subject(:row) { table.at('tr:nth-child(
|
89
|
+
subject(:row) { table.at('tr:nth-child(1)').search('th') }
|
92
90
|
its(:count) { should == 2 }
|
93
91
|
it { expect(row.first['colspan']).to eq '2' }
|
94
92
|
end
|
95
|
-
|
93
|
+
|
96
94
|
describe 'first data row' do
|
97
|
-
let(:row) { table.at('tr:
|
95
|
+
let(:row) { table.at('tbody > tr:first-child') }
|
98
96
|
subject { row.inner_html.scan(/<t[dh].+?<\/t[dh]>/) }
|
99
97
|
it { is_expected.to eq [
|
100
98
|
'<th rowspan="3">foo</th>',
|
@@ -12,6 +12,116 @@ describe Daru::Vector do
|
|
12
12
|
end
|
13
13
|
end
|
14
14
|
|
15
|
+
let(:dv) { dv = Daru::Vector.new (["Tyrion", "Daenerys", "Jon Starkgaryen"]), index: Daru::Index.new([:t, :d, :j]) }
|
16
|
+
|
17
|
+
context "#max" do
|
18
|
+
it "returns max value" do
|
19
|
+
expect(dv.max).to eq("Tyrion")
|
20
|
+
end
|
21
|
+
it "returns N max values" do
|
22
|
+
expect(dv.max(2)).to eq(["Tyrion","Jon Starkgaryen"])
|
23
|
+
end
|
24
|
+
it "returns max value, sorted by comparitive block input" do
|
25
|
+
expect(dv.max { |a,b| a.size <=> b.size }).to eq("Jon Starkgaryen")
|
26
|
+
end
|
27
|
+
it "returns max value, sorted by object block input" do
|
28
|
+
expect(dv.max { |x| x.size }).to eq("Jon Starkgaryen")
|
29
|
+
end
|
30
|
+
it "returns N max values, sorted by comparitive block input" do
|
31
|
+
expect(dv.max(2) {|a,b| a.size <=> b.size}).to eq(["Jon Starkgaryen","Daenerys"])
|
32
|
+
end
|
33
|
+
it "returns N max values, sorted by object block input" do
|
34
|
+
expect(dv.max(2) {|x| x.size }).to eq(["Jon Starkgaryen","Daenerys"])
|
35
|
+
end
|
36
|
+
end
|
37
|
+
|
38
|
+
context "#index_of_max" do
|
39
|
+
it "returns index_of_max value" do
|
40
|
+
expect(dv.index_of_max).to eq(:t)
|
41
|
+
end
|
42
|
+
it "returns N index_of_max values" do
|
43
|
+
expect(dv.index_of_max(2)).to eq([:t, :j])
|
44
|
+
end
|
45
|
+
it "returns index_of_max value, sorted by comparitive block input" do
|
46
|
+
expect(dv.index_of_max { |a,b| a.size <=> b.size }).to eq(:j)
|
47
|
+
end
|
48
|
+
it "returns index_of_max value, sorted by object block input" do
|
49
|
+
expect(dv.index_of_max { |x| x.size }).to eq(:j)
|
50
|
+
end
|
51
|
+
it "returns N index_of_max values, sorted by comparitive block input" do
|
52
|
+
expect(dv.index_of_max(2) {|a,b| a.size <=> b.size}).to eq([:j, :d])
|
53
|
+
end
|
54
|
+
it "returns N index_of_max values, sorted by object block input" do
|
55
|
+
expect(dv.index_of_max(2) {|x| x.size }).to eq([:j, :d])
|
56
|
+
end
|
57
|
+
end
|
58
|
+
|
59
|
+
context "#min" do
|
60
|
+
it "returns min value" do
|
61
|
+
expect(dv.min).to eq("Daenerys")
|
62
|
+
end
|
63
|
+
it "returns N min values" do
|
64
|
+
expect(dv.min(2)).to eq(["Daenerys","Jon Starkgaryen"])
|
65
|
+
end
|
66
|
+
it "returns min value, sorted by comparitive block input" do
|
67
|
+
expect(dv.min { |a,b| a.size <=> b.size }).to eq("Tyrion")
|
68
|
+
end
|
69
|
+
it "returns min value, sorted by object block input" do
|
70
|
+
expect(dv.min { |x| x.size }).to eq("Tyrion")
|
71
|
+
end
|
72
|
+
it "returns N min values, sorted by comparitive block input" do
|
73
|
+
expect(dv.min(2) {|a,b| a.size <=> b.size}).to eq(["Tyrion","Daenerys"])
|
74
|
+
end
|
75
|
+
it "returns N min values, sorted by object block input" do
|
76
|
+
expect(dv.min(2) {|x| x.size }).to eq(["Tyrion","Daenerys"])
|
77
|
+
end
|
78
|
+
end
|
79
|
+
|
80
|
+
context "#index_of_min" do
|
81
|
+
it "returns index of min value" do
|
82
|
+
expect(dv.index_of_min).to eq(:d)
|
83
|
+
end
|
84
|
+
it "returns N index of min values" do
|
85
|
+
expect(dv.index_of_min(2)).to eq([:d, :j])
|
86
|
+
end
|
87
|
+
it "returns index of min value, sorted by comparitive block input" do
|
88
|
+
expect(dv.index_of_min { |a,b| a.size <=> b.size }).to eq(:t)
|
89
|
+
end
|
90
|
+
it "returns index of min value, sorted by object block input" do
|
91
|
+
expect(dv.index_of_min { |x| x.size }).to eq(:t)
|
92
|
+
end
|
93
|
+
it "returns N index of min values, sorted by comparitive block input" do
|
94
|
+
expect(dv.index_of_min(2) {|a,b| a.size <=> b.size}).to eq([:t, :d])
|
95
|
+
end
|
96
|
+
it "returns N index of min values, sorted by object block input" do
|
97
|
+
expect(dv.index_of_min(2) {|x| x.size }).to eq([:t, :d])
|
98
|
+
end
|
99
|
+
end
|
100
|
+
|
101
|
+
context "#max_by" do
|
102
|
+
it "tests alias of max_by to max" do
|
103
|
+
expect(dv.method(:max_by)).to eq(dv.method(:max))
|
104
|
+
end
|
105
|
+
end
|
106
|
+
|
107
|
+
context "#min_by" do
|
108
|
+
it "tests alias of min_by to min" do
|
109
|
+
expect(dv.method(:min_by)).to eq(dv.method(:min))
|
110
|
+
end
|
111
|
+
end
|
112
|
+
|
113
|
+
context "#index_of_max_by" do
|
114
|
+
it "tests alias of index_of_max_by to index_of_max" do
|
115
|
+
expect(dv.method(:index_of_max_by)).to eq(dv.method(:index_of_max))
|
116
|
+
end
|
117
|
+
end
|
118
|
+
|
119
|
+
context "#index_of_min_by" do
|
120
|
+
it "tests alias of index_of_min_by to index_of_min" do
|
121
|
+
expect(dv.method(:index_of_min_by)).to eq(dv.method(:index_of_min))
|
122
|
+
end
|
123
|
+
end
|
124
|
+
|
15
125
|
context "#sum_of_squares" do
|
16
126
|
it "calcs sum of squares, omits nil values" do
|
17
127
|
v = Daru::Vector.new [1,2,3,4,5,6], dtype: dtype
|
@@ -583,26 +693,38 @@ describe Daru::Vector do
|
|
583
693
|
end
|
584
694
|
end
|
585
695
|
|
586
|
-
|
587
|
-
|
588
|
-
# MACD uses a lot more data than the other ones, so we need a bigger vector
|
589
|
-
data = Daru::Vector.new(
|
590
|
-
File.readlines("spec/fixtures/stock_data.csv").map(&:to_f))
|
696
|
+
RSpec.shared_examples 'correct macd' do |*args|
|
697
|
+
let(:source) { Daru::DataFrame.from_csv('spec/fixtures/macd_data.csv') }
|
591
698
|
|
592
|
-
|
699
|
+
# skip initial records during compare as ema is sensitive to
|
700
|
+
# period used.
|
701
|
+
# http://ta-lib.org/d_api/ta_setunstableperiod.html
|
702
|
+
let(:stability_offset) { 90 }
|
703
|
+
let(:delta) { 0.001 }
|
704
|
+
let(:desc) { args.empty? ? '12_26_9' : args.join('_') }
|
593
705
|
|
594
|
-
|
595
|
-
expect(macd[-1]).to be_within(1e-6).of(3.12e-4)
|
596
|
-
expect(macd[-10]).to be_within(1e-4).of(-1.07e-2)
|
597
|
-
expect(macd[-20]).to be_within(1e-5).of(-5.65e-3)
|
706
|
+
subject { source['price'].macd(*args) }
|
598
707
|
|
599
|
-
|
600
|
-
|
601
|
-
|
602
|
-
|
708
|
+
%w[ macd macdsig macdhist ].each_with_index do |field, i|
|
709
|
+
it do
|
710
|
+
act = subject[i][stability_offset..-1]
|
711
|
+
exp = source["#{field}_#{desc}"][stability_offset..-1]
|
712
|
+
expect(act).to be_all_within(delta).of(exp)
|
713
|
+
end
|
603
714
|
end
|
604
715
|
end
|
605
716
|
|
717
|
+
describe '#macd' do
|
718
|
+
context 'by default' do
|
719
|
+
it_should_behave_like 'correct macd'
|
720
|
+
end
|
721
|
+
|
722
|
+
context 'custom values for fast, slow, signal' do
|
723
|
+
it_should_behave_like 'correct macd', 6, 13, 4
|
724
|
+
end
|
725
|
+
|
726
|
+
end
|
727
|
+
|
606
728
|
context "#cumsum" do
|
607
729
|
it "calculates cumulative sum" do
|
608
730
|
vector = Daru::Vector.new([1,2,3,4,5,6,7,8,9,10])
|