daru 0.1.3.1 → 0.1.4
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- checksums.yaml +4 -4
- data/.gitignore +2 -0
- data/.rspec +2 -1
- data/.rspec_formatter.rb +33 -0
- data/.rubocop.yml +26 -2
- data/History.md +38 -0
- data/README.md +22 -13
- data/Rakefile +50 -2
- data/benchmarks/csv_reading.rb +22 -0
- data/daru.gemspec +9 -2
- data/lib/daru.rb +36 -4
- data/lib/daru/accessors/array_wrapper.rb +6 -1
- data/lib/daru/accessors/dataframe_by_row.rb +10 -2
- data/lib/daru/accessors/gsl_wrapper.rb +1 -3
- data/lib/daru/accessors/nmatrix_wrapper.rb +9 -0
- data/lib/daru/category.rb +935 -0
- data/lib/daru/core/group_by.rb +29 -38
- data/lib/daru/core/merge.rb +186 -145
- data/lib/daru/core/query.rb +22 -11
- data/lib/daru/dataframe.rb +976 -885
- data/lib/daru/date_time/index.rb +166 -166
- data/lib/daru/date_time/offsets.rb +66 -77
- data/lib/daru/formatters/table.rb +54 -0
- data/lib/daru/helpers/array.rb +40 -0
- data/lib/daru/index.rb +476 -73
- data/lib/daru/io/io.rb +66 -45
- data/lib/daru/io/sql_data_source.rb +33 -62
- data/lib/daru/iruby/helpers.rb +38 -0
- data/lib/daru/iruby/templates/dataframe.html.erb +52 -0
- data/lib/daru/iruby/templates/dataframe_mi.html.erb +58 -0
- data/lib/daru/iruby/templates/multi_index.html.erb +12 -0
- data/lib/daru/iruby/templates/vector.html.erb +27 -0
- data/lib/daru/iruby/templates/vector_mi.html.erb +36 -0
- data/lib/daru/maths/arithmetic/dataframe.rb +16 -18
- data/lib/daru/maths/arithmetic/vector.rb +4 -6
- data/lib/daru/maths/statistics/dataframe.rb +8 -15
- data/lib/daru/maths/statistics/vector.rb +120 -98
- data/lib/daru/monkeys.rb +12 -40
- data/lib/daru/plotting/gruff.rb +3 -0
- data/lib/daru/plotting/gruff/category.rb +49 -0
- data/lib/daru/plotting/gruff/dataframe.rb +91 -0
- data/lib/daru/plotting/gruff/vector.rb +57 -0
- data/lib/daru/plotting/nyaplot.rb +3 -0
- data/lib/daru/plotting/nyaplot/category.rb +34 -0
- data/lib/daru/plotting/nyaplot/dataframe.rb +187 -0
- data/lib/daru/plotting/nyaplot/vector.rb +46 -0
- data/lib/daru/vector.rb +694 -421
- data/lib/daru/version.rb +1 -1
- data/profile/_base.rb +23 -0
- data/profile/df_to_a.rb +10 -0
- data/profile/filter.rb +13 -0
- data/profile/joining.rb +13 -0
- data/profile/sorting.rb +12 -0
- data/profile/vector_each_with_index.rb +9 -0
- data/spec/accessors/wrappers_spec.rb +2 -4
- data/spec/categorical_spec.rb +1734 -0
- data/spec/core/group_by_spec.rb +52 -2
- data/spec/core/merge_spec.rb +63 -2
- data/spec/core/query_spec.rb +236 -80
- data/spec/dataframe_spec.rb +1373 -79
- data/spec/date_time/data_spec.rb +3 -5
- data/spec/date_time/index_spec.rb +154 -17
- data/spec/date_time/offsets_spec.rb +3 -4
- data/spec/fixtures/empties.dat +2 -0
- data/spec/fixtures/strings.dat +2 -0
- data/spec/formatters/table_formatter_spec.rb +99 -0
- data/spec/helpers_spec.rb +8 -0
- data/spec/index/categorical_index_spec.rb +168 -0
- data/spec/index/index_spec.rb +283 -0
- data/spec/index/multi_index_spec.rb +570 -0
- data/spec/io/io_spec.rb +31 -4
- data/spec/io/sql_data_source_spec.rb +0 -1
- data/spec/iruby/dataframe_spec.rb +172 -0
- data/spec/iruby/helpers_spec.rb +49 -0
- data/spec/iruby/multi_index_spec.rb +37 -0
- data/spec/iruby/vector_spec.rb +107 -0
- data/spec/math/arithmetic/dataframe_spec.rb +71 -13
- data/spec/math/arithmetic/vector_spec.rb +8 -10
- data/spec/math/statistics/dataframe_spec.rb +3 -5
- data/spec/math/statistics/vector_spec.rb +45 -55
- data/spec/monkeys_spec.rb +32 -9
- data/spec/plotting/dataframe_spec.rb +386 -0
- data/spec/plotting/vector_spec.rb +230 -0
- data/spec/shared/vector_display_spec.rb +215 -0
- data/spec/spec_helper.rb +23 -0
- data/spec/vector_spec.rb +905 -138
- metadata +143 -11
- data/.rubocop_todo.yml +0 -44
- data/lib/daru/plotting/dataframe.rb +0 -104
- data/lib/daru/plotting/vector.rb +0 -38
- data/spec/daru_spec.rb +0 -58
- data/spec/index_spec.rb +0 -375
@@ -37,24 +37,14 @@ module Daru
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# #=> #<DateTime: 2011-05-03T03:15:00+00:00 ((2455685j,11700s,0n),+0s,2299161j)>
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def initialize opts={}
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n = opts[:n] || 1
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-
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-
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Offsets::Second.new(n*opts[:secs])
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when opts[:mins]
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Offsets::Minute.new(n*opts[:mins])
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when opts[:hours]
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Offsets::Hour.new(n*opts[:hours])
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when opts[:days]
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Offsets::Day.new(n*opts[:days])
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when opts[:weeks]
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Offsets::Day.new(7*n*opts[:weeks])
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when opts[:months]
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Offsets::Month.new(n*opts[:months])
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-
when opts[:years]
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Offsets::Year.new(n*opts[:years])
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Offsets::LIST.each do |key, klass|
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if opts.key?(key)
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@offset = klass.new(n * opts[key])
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break
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end
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end
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@offset = Offsets::Day.new(7*n*opts[:weeks]) if opts[:weeks]
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end
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# Offset a DateTime forward.
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@@ -70,20 +60,46 @@ module Daru
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def - date_time
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@offset - date_time
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end
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+
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def -@
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NegativeDateOffset.new(self)
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end
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end
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class NegativeDateOffset
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def initialize(offset)
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@offset = offset
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end
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def + date_time
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@offset - date_time
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end
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def - date_time
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@offset + date_time
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end
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end
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module Offsets
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class DateOffsetType < DateOffset
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def initialize n=1
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@n = n
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end
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def freq_string
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(@n == 1 ? '' : @n.to_s) + self.class::FREQ
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end
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end
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# Private superclass for Offsets with equal inter-frequencies.
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# @abstract
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# @private
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class Tick <
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class Tick < DateOffsetType
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# @method initialize
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# Initialize one of the subclasses of Tick with the number of the times
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# the offset should be applied, which is the supplied as the argument.
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#
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# @param n [Integer] The number of times an offset should be applied.
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def initialize n=1
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@n = n
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end
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def + date_time
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date_time + @n*multiplier
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@@ -102,13 +118,11 @@ module Daru
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# offset + DateTime.new(2012,5,1,4,3)
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# #=> #<DateTime: 2012-05-01T04:03:05+00:00 ((2456049j,14585s,0n),+0s,2299161j)>
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class Second < Tick
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FREQ = 'S'.freeze
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+
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def multiplier
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1.1574074074074073e-05
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end
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-
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def freq_string
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(@n == 1 ? '' : @n.to_s) + 'S'
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end
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end
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# Create a minutes offset
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# offset + DateTime.new(2012,5,1,4,3)
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# #=> #<DateTime: 2012-05-01T04:11:00+00:00 ((2456049j,15060s,0n),+0s,2299161j)>
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class Minute < Tick
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FREQ = 'M'.freeze
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def multiplier
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0.0006944444444444445
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end
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-
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def freq_string
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(@n == 1 ? '' : @n.to_s) + 'M'
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-
end
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end
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# Create an hours offset
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# offset + DateTime.new(2012,5,1,4,3)
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# #=> #<DateTime: 2012-05-01T12:03:00+00:00 ((2456049j,43380s,0n),+0s,2299161j)>
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class Hour < Tick
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FREQ = 'H'.freeze
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+
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def multiplier
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0.041666666666666664
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end
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def freq_string
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(@n == 1 ? '' : @n.to_s) + 'H'
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end
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end
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# Create an days offset
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# offset + DateTime.new(2012,5,1,4,3)
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# #=> #<DateTime: 2012-05-03T04:03:00+00:00 ((2456051j,14580s,0n),+0s,2299161j)>
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class Day < Tick
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FREQ = 'D'.freeze
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+
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def multiplier
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1.0
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end
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-
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def freq_string
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(@n == 1 ? '' : @n.to_s) + 'D'
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end
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end
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# Create an months offset
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# offset + DateTime.new(2012,5,1,4,3)
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# #=> #<DateTime: 2012-10-01T04:03:00+00:00 ((2456202j,14580s,0n),+0s,2299161j)>
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class Month < Tick
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-
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(@n == 1 ? '' : @n.to_s) + 'MONTH'
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end
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FREQ = 'MONTH'.freeze
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def + date_time
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date_time >> @n
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@@ -191,9 +197,7 @@ module Daru
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# offset + DateTime.new(2012,5,1,4,3)
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# #=> #<DateTime: 2014-05-01T04:03:00+00:00 ((2456779j,14580s,0n),+0s,2299161j)>
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class Year < Tick
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-
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(@n == 1 ? '' : @n.to_s) + 'YEAR'
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end
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FREQ = 'YEAR'.freeze
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def + date_time
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date_time >> @n*12
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@@ -247,14 +251,8 @@ module Daru
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# offset = Daru::Offsets::MonthBegin.new(2)
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# offset + DateTime.new(2012,5,5)
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# #=> #<DateTime: 2012-07-01T00:00:00+00:00 ((2456110j,0s,0n),+0s,2299161j)>
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class MonthBegin <
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@n = n
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end
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-
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def freq_string
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(@n == 1 ? '' : @n.to_s) + 'MB'
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end
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class MonthBegin < DateOffsetType
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FREQ = 'MB'.freeze
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def + date_time
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@n.times do
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# offset = Daru::Offsets::MonthEnd.new
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# offset + DateTime.new(2012,5,5)
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# #=> #<DateTime: 2012-05-31T00:00:00+00:00 ((2456079j,0s,0n),+0s,2299161j)>
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class MonthEnd <
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@n = n
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end
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def freq_string
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(@n == 1 ? '' : @n.to_s) + 'ME'
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end
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class MonthEnd < DateOffsetType
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FREQ = 'ME'.freeze
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def + date_time
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@n.times do
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@@ -333,14 +325,8 @@ module Daru
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# offset = Daru::Offsets::YearBegin.new(3)
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# offset + DateTime.new(2012,5,5)
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# #=> #<DateTime: 2015-01-01T00:00:00+00:00 ((2457024j,0s,0n),+0s,2299161j)>
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class YearBegin <
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-
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@n = n
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-
end
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-
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def freq_string
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(@n == 1 ? '' : @n.to_s) + 'YB'
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-
end
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class YearBegin < DateOffsetType
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FREQ = 'YB'.freeze
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def + date_time
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DateTime.new(date_time.year + @n, 1, 1,
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@@ -357,7 +343,7 @@ module Daru
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end
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def on_offset? date_time
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date_time.month == 1
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date_time.month == 1 && date_time.day == 1
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end
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end
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@@ -368,14 +354,8 @@ module Daru
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# offset = Daru::Offsets::YearEnd.new
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# offset + DateTime.new(2012,5,5)
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# #=> #<DateTime: 2012-12-31T00:00:00+00:00 ((2456293j,0s,0n),+0s,2299161j)>
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class YearEnd <
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-
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@n = n
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-
end
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-
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def freq_string
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(@n == 1 ? '' : @n.to_s) + 'YE'
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-
end
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class YearEnd < DateOffsetType
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FREQ = 'YE'.freeze
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def + date_time
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if on_offset?(date_time)
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@@ -392,9 +372,18 @@ module Daru
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end
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def on_offset? date_time
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-
date_time.month == 12
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date_time.month == 12 && date_time.day == 31
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end
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end
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+
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LIST = {
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secs: Second,
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mins: Minute,
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hours: Hour,
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days: Day,
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months: Month,
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years: Year
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}.freeze
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end
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# rubocop:enable Style/OpMethod
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@@ -0,0 +1,54 @@
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1
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module Daru
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2
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module Formatters
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3
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class Table
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4
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def self.format data, options={}
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new(data, options[:headers], options[:row_headers])
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.format(options[:threshold], options[:spacing])
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end
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def initialize(data, headers, row_headers)
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@data = data || []
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@headers = (headers || []).to_a
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@row_headers = (row_headers || []).to_a
|
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end
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DEFAULT_SPACING = 10
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DEFAULT_THRESHOLD = 15
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def format threshold=nil, spacing=nil
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rows = build_rows(threshold || DEFAULT_THRESHOLD)
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formatter = construct_formatter rows, spacing || DEFAULT_SPACING
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rows.map { |r| formatter % r }.join("\n")
|
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end
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private
|
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def build_rows threshold # rubocop:disable Metrics/AbcSize
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29
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@row_headers.first(threshold).zip(@data).map do |(r, datarow)|
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[*[r].flatten.map(&:to_s), *(datarow || []).map(&method(:pretty_to_s))]
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31
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+
end.tap do |rows|
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32
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+
unless @headers.empty?
|
33
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+
spaces_to_add = rows.empty? ? 0 : rows.first.size - @headers.size
|
34
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+
rows.unshift [''] * spaces_to_add + @headers.map(&:to_s)
|
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+
end
|
36
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+
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rows << ['...'] * rows.first.count if @row_headers.count > threshold
|
38
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+
end
|
39
|
+
end
|
40
|
+
|
41
|
+
def construct_formatter rows, spacing
|
42
|
+
width = rows.flatten.map(&:size).max
|
43
|
+
width = [3, width].max # not less than 'nil'
|
44
|
+
width = [width, spacing].min # not more than max width
|
45
|
+
|
46
|
+
" %#{width}.#{width}s" * rows.first.size
|
47
|
+
end
|
48
|
+
|
49
|
+
def pretty_to_s(val)
|
50
|
+
val.nil? ? 'nil' : val.to_s
|
51
|
+
end
|
52
|
+
end
|
53
|
+
end
|
54
|
+
end
|
@@ -0,0 +1,40 @@
|
|
1
|
+
module Daru
|
2
|
+
module ArrayHelper
|
3
|
+
module_function
|
4
|
+
|
5
|
+
# Recode repeated values on an array, adding the number of repetition
|
6
|
+
# at the end
|
7
|
+
# Example:
|
8
|
+
# a=%w{a b c c d d d e}
|
9
|
+
# a.recode_repeated
|
10
|
+
# => ["a","b","c_1","c_2","d_1","d_2","d_3","e"]
|
11
|
+
def recode_repeated(array)
|
12
|
+
return array if array.size == array.uniq.size
|
13
|
+
|
14
|
+
# create hash of { <name> => 0}
|
15
|
+
# for all names which are more than one time in array
|
16
|
+
counter = array
|
17
|
+
.group_by(&:itself)
|
18
|
+
.select { |_, g| g.size > 1 }
|
19
|
+
.map(&:first)
|
20
|
+
.collect { |n| [n, 0] }.to_h
|
21
|
+
|
22
|
+
# ...and use this hash for actual recode
|
23
|
+
array.collect do |n|
|
24
|
+
if counter.key?(n)
|
25
|
+
counter[n] += 1
|
26
|
+
new_n = '%s_%d' % [n, counter[n]]
|
27
|
+
n.is_a?(Symbol) ? new_n.to_sym : new_n
|
28
|
+
else
|
29
|
+
n
|
30
|
+
end
|
31
|
+
end
|
32
|
+
end
|
33
|
+
|
34
|
+
def array_of?(array, match)
|
35
|
+
array.is_a?(Array) &&
|
36
|
+
!array.empty? &&
|
37
|
+
array.all? { |el| match === el } # rubocop:disable Style/CaseEquality
|
38
|
+
end
|
39
|
+
end
|
40
|
+
end
|
data/lib/daru/index.rb
CHANGED
@@ -21,19 +21,24 @@ module Daru
|
|
21
21
|
# We over-ride the .new method so that any sort of Index can be generated
|
22
22
|
# from Daru::Index based on the types of arguments supplied.
|
23
23
|
def self.new *args, &block
|
24
|
-
|
25
|
-
|
26
|
-
|
27
|
-
|
28
|
-
|
29
|
-
|
30
|
-
|
31
|
-
|
24
|
+
# FIXME: I'm not sure this clever trick really deserves our attention.
|
25
|
+
# Most of common ruby libraries just avoid it in favor of usual
|
26
|
+
# factor method, like `Index.create`. When `Index.new(...).class != Index`
|
27
|
+
# it just leads to confusion and surprises. - zverok, 2016-05-18
|
28
|
+
source = args.first
|
29
|
+
|
30
|
+
MultiIndex.try_from_tuples(source) ||
|
31
|
+
DateTimeIndex.try_create(source) ||
|
32
32
|
allocate.tap { |i| i.send :initialize, *args, &block }
|
33
|
-
|
33
|
+
end
|
34
|
+
|
35
|
+
def self.coerce maybe_index
|
36
|
+
maybe_index.is_a?(Index) ? maybe_index : Daru::Index.new(maybe_index)
|
34
37
|
end
|
35
38
|
|
36
39
|
def each(&block)
|
40
|
+
return to_enum(:each) unless block_given?
|
41
|
+
|
37
42
|
@relation_hash.each_key(&block)
|
38
43
|
self
|
39
44
|
end
|
@@ -70,36 +75,88 @@ module Daru
|
|
70
75
|
@relation_hash.values == other.relation_hash.values
|
71
76
|
end
|
72
77
|
|
73
|
-
def [](*
|
74
|
-
loc = key[0]
|
75
|
-
|
78
|
+
def [](key, *rest)
|
76
79
|
case
|
77
|
-
when
|
78
|
-
|
79
|
-
|
80
|
-
|
81
|
-
slice first, last
|
82
|
-
when key.size > 1
|
83
|
-
if include? key[0]
|
84
|
-
Daru::Index.new key.map { |k| k }
|
85
|
-
else
|
86
|
-
# Assume the user is specifing values for index not keys
|
87
|
-
# Return index object having keys corresponding to values provided
|
88
|
-
Daru::Index.new key.map { |k| key k }
|
89
|
-
end
|
80
|
+
when key.is_a?(Range)
|
81
|
+
by_range key
|
82
|
+
when !rest.empty?
|
83
|
+
by_multi_key key, *rest
|
90
84
|
else
|
91
|
-
|
92
|
-
|
93
|
-
|
94
|
-
|
95
|
-
|
96
|
-
|
85
|
+
by_single_key key
|
86
|
+
end
|
87
|
+
end
|
88
|
+
|
89
|
+
# Returns true if all arguments are either a valid category or position
|
90
|
+
# @param [Array<object>] *indexes categories or positions
|
91
|
+
# @return [true, false]
|
92
|
+
# @example
|
93
|
+
# idx.valid? :a, 2
|
94
|
+
# # => true
|
95
|
+
# idx.valid? 3
|
96
|
+
# # => false
|
97
|
+
def valid? *indexes
|
98
|
+
indexes.all? { |i| to_a.include?(i) || (i.is_a?(Numeric) && i < size) }
|
99
|
+
end
|
100
|
+
|
101
|
+
# Returns positions given indexes or positions
|
102
|
+
# @note If the arugent is both a valid index and a valid position,
|
103
|
+
# it will treated as valid index
|
104
|
+
# @param [Array<object>] *indexes indexes or positions
|
105
|
+
# @example
|
106
|
+
# x = Daru::Index.new [:a, :b, :c]
|
107
|
+
# x.pos :a, 1
|
108
|
+
# # => [0, 1]
|
109
|
+
def pos *indexes
|
110
|
+
indexes = preprocess_range(indexes.first) if indexes.first.is_a? Range
|
111
|
+
|
112
|
+
if indexes.size == 1
|
113
|
+
self[indexes.first]
|
114
|
+
else
|
115
|
+
indexes.map { |index| by_single_key index }
|
116
|
+
end
|
117
|
+
end
|
118
|
+
|
119
|
+
def subset *indexes
|
120
|
+
if indexes.first.is_a? Range
|
121
|
+
slice indexes.first.begin, indexes.first.end
|
122
|
+
elsif include? indexes.first
|
123
|
+
# Assume 'indexes' contain indexes not positions
|
124
|
+
Daru::Index.new indexes
|
125
|
+
else
|
126
|
+
# Assume 'indexes' contain positions not indexes
|
127
|
+
Daru::Index.new indexes.map { |k| key k }
|
128
|
+
end
|
129
|
+
end
|
130
|
+
|
131
|
+
# Takes positional values and returns subset of the self
|
132
|
+
# capturing the indexes at mentioned positions
|
133
|
+
# @param [Array<Integer>] positional values
|
134
|
+
# @return [object] index object
|
135
|
+
# @example
|
136
|
+
# idx = Daru::Index.new [:a, :b, :c]
|
137
|
+
# idx.at 0, 1
|
138
|
+
# # => #<Daru::Index(2): {a, b}>
|
139
|
+
def at *positions
|
140
|
+
positions = preprocess_positions(*positions)
|
141
|
+
validate_positions(*positions)
|
142
|
+
if positions.is_a? Integer
|
143
|
+
key(positions)
|
144
|
+
else
|
145
|
+
self.class.new positions.map(&method(:key))
|
146
|
+
end
|
147
|
+
end
|
148
|
+
|
149
|
+
def inspect threshold=20
|
150
|
+
if size <= threshold
|
151
|
+
"#<#{self.class}(#{size}): {#{to_a.join(', ')}}>"
|
152
|
+
else
|
153
|
+
"#<#{self.class}(#{size}): {#{to_a.first(threshold).join(', ')} ... #{to_a.last}}>"
|
97
154
|
end
|
98
155
|
end
|
99
156
|
|
100
157
|
def slice *args
|
101
|
-
start
|
102
|
-
en
|
158
|
+
start = args[0]
|
159
|
+
en = args[1]
|
103
160
|
|
104
161
|
if start.is_a?(Integer) && en.is_a?(Integer)
|
105
162
|
Index.new @keys[start..en]
|
@@ -118,6 +175,7 @@ module Daru
|
|
118
175
|
|
119
176
|
# Produce a new index from the set intersection of two indexes
|
120
177
|
def & other
|
178
|
+
Index.new(to_a & other.to_a)
|
121
179
|
end
|
122
180
|
|
123
181
|
def to_a
|
@@ -125,7 +183,8 @@ module Daru
|
|
125
183
|
end
|
126
184
|
|
127
185
|
def key(value)
|
128
|
-
|
186
|
+
return nil unless value.is_a?(Numeric)
|
187
|
+
@keys[value]
|
129
188
|
end
|
130
189
|
|
131
190
|
def include? index
|
@@ -140,6 +199,10 @@ module Daru
|
|
140
199
|
Daru::Index.new @relation_hash.keys
|
141
200
|
end
|
142
201
|
|
202
|
+
def add *indexes
|
203
|
+
Daru::Index.new(to_a + indexes)
|
204
|
+
end
|
205
|
+
|
143
206
|
def _dump(*)
|
144
207
|
Marshal.dump(relation_hash: @relation_hash)
|
145
208
|
end
|
@@ -157,11 +220,78 @@ module Daru
|
|
157
220
|
def conform(*)
|
158
221
|
self
|
159
222
|
end
|
223
|
+
|
224
|
+
def reorder(new_order)
|
225
|
+
from = to_a
|
226
|
+
self.class.new(new_order.map { |i| from[i] })
|
227
|
+
end
|
228
|
+
|
229
|
+
private
|
230
|
+
|
231
|
+
def preprocess_range rng
|
232
|
+
start = rng.begin
|
233
|
+
en = rng.end
|
234
|
+
|
235
|
+
if start.is_a?(Integer) && en.is_a?(Integer)
|
236
|
+
@keys[start..en]
|
237
|
+
else
|
238
|
+
start_idx = @relation_hash[start]
|
239
|
+
en_idx = @relation_hash[en]
|
240
|
+
|
241
|
+
@keys[start_idx..en_idx]
|
242
|
+
end
|
243
|
+
end
|
244
|
+
|
245
|
+
def by_range rng
|
246
|
+
slice rng.begin, rng.end
|
247
|
+
end
|
248
|
+
|
249
|
+
def by_multi_key *key
|
250
|
+
if include? key[0]
|
251
|
+
Daru::Index.new key.map { |k| k }
|
252
|
+
else
|
253
|
+
# Assume the user is specifing values for index not keys
|
254
|
+
# Return index object having keys corresponding to values provided
|
255
|
+
Daru::Index.new key.map { |k| key k }
|
256
|
+
end
|
257
|
+
end
|
258
|
+
|
259
|
+
def by_single_key key
|
260
|
+
if @relation_hash.key?(key)
|
261
|
+
@relation_hash[key]
|
262
|
+
elsif key.is_a?(Numeric) && key < size
|
263
|
+
key
|
264
|
+
else
|
265
|
+
raise IndexError, "Specified index #{key.inspect} does not exist"
|
266
|
+
end
|
267
|
+
end
|
268
|
+
|
269
|
+
# Raises IndexError when one of the positions is an invalid position
|
270
|
+
def validate_positions *positions
|
271
|
+
positions = [positions] if positions.is_a? Integer
|
272
|
+
positions.each do |pos|
|
273
|
+
raise IndexError, "#{pos} is not a valid position." if pos >= size
|
274
|
+
end
|
275
|
+
end
|
276
|
+
|
277
|
+
# Preprocess ranges, integers and array in appropriate ways
|
278
|
+
def preprocess_positions *positions
|
279
|
+
if positions.size == 1
|
280
|
+
case positions.first
|
281
|
+
when Integer
|
282
|
+
positions.first
|
283
|
+
when Range
|
284
|
+
size.times.to_a[positions.first]
|
285
|
+
else
|
286
|
+
raise ArgumentError, 'Unkown position type.'
|
287
|
+
end
|
288
|
+
else
|
289
|
+
positions
|
290
|
+
end
|
291
|
+
end
|
160
292
|
end # class Index
|
161
293
|
|
162
294
|
class MultiIndex < Index
|
163
|
-
include Enumerable
|
164
|
-
|
165
295
|
def each(&block)
|
166
296
|
to_a.each(&block)
|
167
297
|
end
|
@@ -179,7 +309,6 @@ module Daru
|
|
179
309
|
def initialize opts={}
|
180
310
|
labels = opts[:labels]
|
181
311
|
levels = opts[:levels]
|
182
|
-
|
183
312
|
raise ArgumentError,
|
184
313
|
'Must specify both labels and levels' unless labels && levels
|
185
314
|
raise ArgumentError,
|
@@ -188,31 +317,23 @@ module Daru
|
|
188
317
|
'Incorrect labels and levels' if incorrect_fields?(labels, levels)
|
189
318
|
|
190
319
|
@labels = labels
|
191
|
-
@levels = levels.map { |e|
|
320
|
+
@levels = levels.map { |e| e.map.with_index.to_h }
|
192
321
|
end
|
193
322
|
|
194
323
|
def incorrect_fields?(_labels, levels)
|
195
|
-
levels[0].size # FIXME: without this call
|
196
|
-
|
197
|
-
correct = levels.all? { |e| e.uniq.size == e.size }
|
324
|
+
levels[0].size # FIXME: without this exact call some specs are failing
|
198
325
|
|
199
|
-
|
326
|
+
levels.any? { |e| e.uniq.size != e.size }
|
200
327
|
end
|
201
328
|
|
202
329
|
private :incorrect_fields?
|
203
330
|
|
204
331
|
def self.from_arrays arrays
|
205
332
|
levels = arrays.map { |e| e.uniq.sort_by(&:to_s) }
|
206
|
-
labels = []
|
207
333
|
|
208
|
-
arrays.each_with_index do |arry, level_index|
|
209
|
-
label = []
|
334
|
+
labels = arrays.each_with_index.map do |arry, level_index|
|
210
335
|
level = levels[level_index]
|
211
|
-
arry.
|
212
|
-
label << level.index(lvl)
|
213
|
-
end
|
214
|
-
|
215
|
-
labels << label
|
336
|
+
arry.map { |lvl| level.index(lvl) }
|
216
337
|
end
|
217
338
|
|
218
339
|
MultiIndex.new labels: labels, levels: levels
|
@@ -222,11 +343,21 @@ module Daru
|
|
222
343
|
from_arrays tuples.transpose
|
223
344
|
end
|
224
345
|
|
346
|
+
def self.try_from_tuples tuples
|
347
|
+
if tuples.respond_to?(:first) && tuples.first.is_a?(Array)
|
348
|
+
from_tuples(tuples)
|
349
|
+
else
|
350
|
+
nil
|
351
|
+
end
|
352
|
+
end
|
353
|
+
|
225
354
|
def [] *key
|
226
355
|
key.flatten!
|
227
356
|
case
|
228
|
-
when key[0].is_a?(Range)
|
229
|
-
|
357
|
+
when key[0].is_a?(Range)
|
358
|
+
retrieve_from_range(key[0])
|
359
|
+
when key[0].is_a?(Integer) && key.size == 1
|
360
|
+
try_retrieve_from_integer(key[0])
|
230
361
|
else
|
231
362
|
begin
|
232
363
|
retrieve_from_tuples key
|
@@ -236,9 +367,71 @@ module Daru
|
|
236
367
|
end
|
237
368
|
end
|
238
369
|
|
370
|
+
def valid? *indexes
|
371
|
+
# FIXME: This is perhaps not a good method
|
372
|
+
pos(*indexes)
|
373
|
+
return true
|
374
|
+
rescue IndexError
|
375
|
+
return false
|
376
|
+
end
|
377
|
+
|
378
|
+
# Returns positions given indexes or positions
|
379
|
+
# @note If the arugent is both a valid index and a valid position,
|
380
|
+
# it will treated as valid index
|
381
|
+
# @param [Array<object>] *indexes indexes or positions
|
382
|
+
# @example
|
383
|
+
# idx = Daru::MultiIndex.from_tuples [[:a, :one], [:a, :two], [:b, :one], [:b, :two]]
|
384
|
+
# idx.pos :a
|
385
|
+
# # => [0, 1]
|
386
|
+
def pos *indexes
|
387
|
+
if indexes.first.is_a? Integer
|
388
|
+
return indexes.first if indexes.size == 1
|
389
|
+
return indexes
|
390
|
+
end
|
391
|
+
res = self[indexes]
|
392
|
+
return res if res.is_a? Integer
|
393
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+
res.map { |i| self[i] }
|
394
|
+
end
|
395
|
+
|
396
|
+
def subset *indexes
|
397
|
+
if indexes.first.is_a? Integer
|
398
|
+
MultiIndex.from_tuples(indexes.map { |index| key(index) })
|
399
|
+
else
|
400
|
+
self[indexes].conform indexes
|
401
|
+
end
|
402
|
+
end
|
403
|
+
|
404
|
+
# Takes positional values and returns subset of the self
|
405
|
+
# capturing the indexes at mentioned positions
|
406
|
+
# @param [Array<Integer>] positional values
|
407
|
+
# @return [object] index object
|
408
|
+
# @example
|
409
|
+
# idx = Daru::MultiIndex.from_tuples [[:a, :one], [:a, :two], [:b, :one], [:b, :two]]
|
410
|
+
# idx.at 0, 1
|
411
|
+
# # => #<Daru::MultiIndex(2x2)>
|
412
|
+
# # a one
|
413
|
+
# # two
|
414
|
+
def at *positions
|
415
|
+
positions = preprocess_positions(*positions)
|
416
|
+
validate_positions(*positions)
|
417
|
+
if positions.is_a? Integer
|
418
|
+
key(positions)
|
419
|
+
else
|
420
|
+
Daru::MultiIndex.from_tuples positions.map(&method(:key))
|
421
|
+
end
|
422
|
+
end
|
423
|
+
|
424
|
+
def add *indexes
|
425
|
+
Daru::MultiIndex.from_tuples to_a << indexes
|
426
|
+
end
|
427
|
+
|
428
|
+
def reorder(new_order)
|
429
|
+
from = to_a
|
430
|
+
self.class.from_tuples(new_order.map { |i| from[i] })
|
431
|
+
end
|
432
|
+
|
239
433
|
def try_retrieve_from_integer int
|
240
|
-
|
241
|
-
int
|
434
|
+
@levels[0].key?(int) ? retrieve_from_tuples([int]) : int
|
242
435
|
end
|
243
436
|
|
244
437
|
def retrieve_from_range range
|
@@ -279,17 +472,9 @@ module Daru
|
|
279
472
|
raise ArgumentError,
|
280
473
|
"Key #{index} is too large" if index >= @labels[0].size
|
281
474
|
|
282
|
-
|
283
|
-
|
284
|
-
|
285
|
-
end
|
286
|
-
|
287
|
-
tuple = []
|
288
|
-
level_indexes.each_with_index do |level_index, i|
|
289
|
-
tuple << @levels[i].keys[level_index]
|
290
|
-
end
|
291
|
-
|
292
|
-
tuple
|
475
|
+
@labels
|
476
|
+
.each_with_index
|
477
|
+
.map { |label, i| @levels[i].keys[label[index]] }
|
293
478
|
end
|
294
479
|
|
295
480
|
def dup
|
@@ -309,15 +494,13 @@ module Daru
|
|
309
494
|
end
|
310
495
|
|
311
496
|
def empty?
|
312
|
-
@labels.flatten.empty?
|
497
|
+
@labels.flatten.empty? && @levels.all?(&:empty?)
|
313
498
|
end
|
314
499
|
|
315
500
|
def include? tuple
|
316
|
-
tuple.
|
317
|
-
tuple.each_with_index
|
318
|
-
|
319
|
-
end
|
320
|
-
true
|
501
|
+
return false unless tuple.is_a? Enumerable
|
502
|
+
tuple.flatten.each_with_index
|
503
|
+
.all? { |tup, i| @levels[i][tup] }
|
321
504
|
end
|
322
505
|
|
323
506
|
def size
|
@@ -342,8 +525,14 @@ module Daru
|
|
342
525
|
Array.new(size) { |i| i }
|
343
526
|
end
|
344
527
|
|
345
|
-
def inspect
|
346
|
-
"Daru::MultiIndex
|
528
|
+
def inspect threshold=20
|
529
|
+
"#<Daru::MultiIndex(#{size}x#{width})>\n" +
|
530
|
+
Formatters::Table.format([], row_headers: sparse_tuples, threshold: threshold)
|
531
|
+
end
|
532
|
+
|
533
|
+
def to_html
|
534
|
+
path = File.expand_path('../iruby/templates/multi_index.html.erb', __FILE__)
|
535
|
+
ERB.new(File.read(path).strip).result(binding)
|
347
536
|
end
|
348
537
|
|
349
538
|
# Provide a MultiIndex for sub vector produced
|
@@ -354,5 +543,219 @@ module Daru
|
|
354
543
|
return self if input_indexes[0].is_a? Range
|
355
544
|
drop_left_level input_indexes.size
|
356
545
|
end
|
546
|
+
|
547
|
+
# Return tuples with nils in place of repeating values, like this:
|
548
|
+
#
|
549
|
+
# [:a , :bar, :one]
|
550
|
+
# [nil, nil , :two]
|
551
|
+
# [nil, :foo, :one]
|
552
|
+
#
|
553
|
+
def sparse_tuples
|
554
|
+
tuples = to_a
|
555
|
+
[tuples.first] + each_cons(2).map { |prev, cur|
|
556
|
+
left = cur.zip(prev).drop_while { |c, p| c == p }
|
557
|
+
[nil] * (cur.size - left.size) + left.map(&:first)
|
558
|
+
}
|
559
|
+
end
|
560
|
+
end
|
561
|
+
|
562
|
+
class CategoricalIndex < Index
|
563
|
+
# Create a categorical index object.
|
564
|
+
# @param indexes [Array<object>] array of indexes
|
565
|
+
# @return [Daru::CategoricalIndex] categorical index
|
566
|
+
# @example
|
567
|
+
# Daru::CategoricalIndex.new [:a, 1, :a, 1, :c]
|
568
|
+
# # => #<Daru::CategoricalIndex(5): {a, 1, a, 1, c}>
|
569
|
+
def initialize indexes
|
570
|
+
# Create a hash to map each category to positional indexes
|
571
|
+
categories = indexes.each_with_index.group_by(&:first)
|
572
|
+
@cat_hash = categories.map { |cat, group| [cat, group.map(&:last)] }.to_h
|
573
|
+
|
574
|
+
# Map each category to a unique integer for effective storage in @array
|
575
|
+
map_cat_int = categories.keys.each_with_index.to_h
|
576
|
+
|
577
|
+
# To link every instance to its category,
|
578
|
+
# it stores integer for every instance representing its category
|
579
|
+
@array = map_cat_int.values_at(*indexes)
|
580
|
+
end
|
581
|
+
|
582
|
+
# Duplicates the index object and return it
|
583
|
+
# @return [Daru::CategoricalIndex] duplicated index object
|
584
|
+
def dup
|
585
|
+
# Improve it by intializing index by hash
|
586
|
+
Daru::CategoricalIndex.new to_a
|
587
|
+
end
|
588
|
+
|
589
|
+
# Returns true index or category is valid
|
590
|
+
# @param index [object] the index value to look for
|
591
|
+
# @return [true, false] true if index is included, false otherwise
|
592
|
+
def include? index
|
593
|
+
@cat_hash.include? index
|
594
|
+
end
|
595
|
+
|
596
|
+
# Returns array of categories
|
597
|
+
# @example
|
598
|
+
# x = Daru::CategoricalIndex.new [:a, 1, :a, 1, :c]
|
599
|
+
# x.categories
|
600
|
+
# # => [:a, 1, :c]
|
601
|
+
def categories
|
602
|
+
@cat_hash.keys
|
603
|
+
end
|
604
|
+
|
605
|
+
# Returns positions given categories or positions
|
606
|
+
# @note If the argument does not a valid category it treats it as position
|
607
|
+
# value and return it as it is.
|
608
|
+
# @param [Array<object>] *indexes categories or positions
|
609
|
+
# @example
|
610
|
+
# x = Daru::CategoricalIndex.new [:a, 1, :a, 1, :c]
|
611
|
+
# x.pos :a, 1
|
612
|
+
# # => [0, 1, 2, 3]
|
613
|
+
def pos *indexes
|
614
|
+
positions = indexes.map do |index|
|
615
|
+
if include? index
|
616
|
+
@cat_hash[index]
|
617
|
+
elsif index.is_a?(Numeric) && index < @array.size
|
618
|
+
index
|
619
|
+
else
|
620
|
+
raise IndexError, "#{index.inspect} is neither a valid category"\
|
621
|
+
' nor a valid position'
|
622
|
+
end
|
623
|
+
end
|
624
|
+
|
625
|
+
positions.flatten!
|
626
|
+
positions.size == 1 ? positions.first : positions.sort
|
627
|
+
end
|
628
|
+
|
629
|
+
# Returns index value from position
|
630
|
+
# @param pos [Integer] the position to look for
|
631
|
+
# @return [object] category corresponding to position
|
632
|
+
# @example
|
633
|
+
# idx = Daru::CategoricalIndex.new [:a, :b, :a, :b, :c]
|
634
|
+
# idx.index_from_pos 1
|
635
|
+
# # => :b
|
636
|
+
def index_from_pos pos
|
637
|
+
cat_from_int @array[pos]
|
638
|
+
end
|
639
|
+
|
640
|
+
# Returns enumerator enumerating all index values in the order they occur
|
641
|
+
# @return [Enumerator] all index values
|
642
|
+
# @example
|
643
|
+
# idx = Daru::CategoricalIndex.new [:a, :a, :b]
|
644
|
+
# idx.each.to_a
|
645
|
+
# # => [:a, :a, :b]
|
646
|
+
def each
|
647
|
+
return enum_for(:each) unless block_given?
|
648
|
+
@array.each { |pos| yield cat_from_int pos }
|
649
|
+
self
|
650
|
+
end
|
651
|
+
|
652
|
+
# Compares two index object. Returns true if every instance of category
|
653
|
+
# occur at the same position
|
654
|
+
# @param [Daru::CateogricalIndex] other index object to be checked against
|
655
|
+
# @return [true, false] true if other is similar to self
|
656
|
+
# @example
|
657
|
+
# a = Daru::CategoricalIndex.new [:a, :a, :b]
|
658
|
+
# b = Daru::CategoricalIndex.new [:b, :a, :a]
|
659
|
+
# a == b
|
660
|
+
# # => false
|
661
|
+
def == other
|
662
|
+
self.class == other.class &&
|
663
|
+
size == other.size &&
|
664
|
+
to_h == other.to_h
|
665
|
+
end
|
666
|
+
|
667
|
+
# Returns all the index values
|
668
|
+
# @return [Array] all index values
|
669
|
+
# @example
|
670
|
+
# idx = Daru::CategoricalIndex.new [:a, :b, :a]
|
671
|
+
# idx.to_a
|
672
|
+
def to_a
|
673
|
+
each.to_a
|
674
|
+
end
|
675
|
+
|
676
|
+
# Returns hash table mapping category to positions at which they occur
|
677
|
+
# @return [Hash] hash table mapping category to array of positions
|
678
|
+
# @example
|
679
|
+
# idx = Daru::CategoricalIndex.new [:a, :b, :a]
|
680
|
+
# idx.to_h
|
681
|
+
# # => {:a=>[0, 2], :b=>[1]}
|
682
|
+
def to_h
|
683
|
+
@cat_hash
|
684
|
+
end
|
685
|
+
|
686
|
+
# Returns size of the index object
|
687
|
+
# @return [Integer] total number of instances of all categories
|
688
|
+
# @example
|
689
|
+
# idx = Daru::CategoricalIndex.new [:a, :b, :a]
|
690
|
+
# idx.size
|
691
|
+
# # => 3
|
692
|
+
def size
|
693
|
+
@array.size
|
694
|
+
end
|
695
|
+
|
696
|
+
# Returns true if index object is storing no category
|
697
|
+
# @return [true, false] true if index object is empty
|
698
|
+
# @example
|
699
|
+
# i = Daru::CategoricalIndex.new []
|
700
|
+
# # => #<Daru::CategoricalIndex(0): {}>
|
701
|
+
# i.empty?
|
702
|
+
# # => true
|
703
|
+
def empty?
|
704
|
+
@array.empty?
|
705
|
+
end
|
706
|
+
|
707
|
+
# Return subset given categories or positions
|
708
|
+
# @param [Array<object>] *indexes categories or positions
|
709
|
+
# @return [Daru::CategoricalIndex] subset of the self containing the
|
710
|
+
# mentioned categories or positions
|
711
|
+
# @example
|
712
|
+
# idx = Daru::CategoricalIndex.new [:a, :b, :a, :b, :c]
|
713
|
+
# idx.subset :a, :b
|
714
|
+
# # => #<Daru::CategoricalIndex(4): {a, b, a, b}>
|
715
|
+
def subset *indexes
|
716
|
+
positions = pos(*indexes)
|
717
|
+
new_index = positions.map { |pos| index_from_pos pos }
|
718
|
+
|
719
|
+
Daru::CategoricalIndex.new new_index.flatten
|
720
|
+
end
|
721
|
+
|
722
|
+
# Takes positional values and returns subset of the self
|
723
|
+
# capturing the categories at mentioned positions
|
724
|
+
# @param [Array<Integer>] positional values
|
725
|
+
# @return [object] index object
|
726
|
+
# @example
|
727
|
+
# idx = Daru::CategoricalIndex.new [:a, :b, :a, :b, :c]
|
728
|
+
# idx.at 0, 1
|
729
|
+
# # => #<Daru::CategoricalIndex(2): {a, b}>
|
730
|
+
def at *positions
|
731
|
+
positions = preprocess_positions(*positions)
|
732
|
+
validate_positions(*positions)
|
733
|
+
if positions.is_a? Integer
|
734
|
+
index_from_pos(positions)
|
735
|
+
else
|
736
|
+
Daru::CategoricalIndex.new positions.map(&method(:index_from_pos))
|
737
|
+
end
|
738
|
+
end
|
739
|
+
|
740
|
+
# Add specified index values to the index object
|
741
|
+
# @param [Array<object>] *indexes index values to add
|
742
|
+
# @return [Daru::CategoricalIndex] index object with added values
|
743
|
+
# @example
|
744
|
+
# idx = Daru::CategoricalIndex.new [:a, :b, :a, :b, :c]
|
745
|
+
# idx.add :d
|
746
|
+
# # => #<Daru::CategoricalIndex(6): {a, b, a, b, c, d}>
|
747
|
+
def add *indexes
|
748
|
+
Daru::CategoricalIndex.new(to_a + indexes)
|
749
|
+
end
|
750
|
+
|
751
|
+
private
|
752
|
+
|
753
|
+
def int_from_cat cat
|
754
|
+
@cat_hash.keys.index cat
|
755
|
+
end
|
756
|
+
|
757
|
+
def cat_from_int cat
|
758
|
+
@cat_hash.keys[cat]
|
759
|
+
end
|
357
760
|
end
|
358
761
|
end
|