conceptql 0.2.0 → 0.3.0
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- checksums.yaml +4 -4
- data/.gitignore +2 -0
- data/CHANGELOG.md +32 -104
- data/Gemfile +2 -0
- data/README.md +43 -21
- data/Rakefile +34 -0
- data/conceptql.gemspec +3 -4
- data/config/provenance.yml +454 -0
- data/doc/converter.rb +33 -0
- data/doc/metadata.md +89 -0
- data/doc/spec.md +1775 -861
- data/doc/spec.md.cql +1930 -0
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- data/doc/spec/ff7d5b5573d09bd7c4cdd3aeda124d18bf82ec46673a62881b399a75d69f3f53.png +0 -0
- data/lib/conceptql.rb +21 -1
- data/lib/conceptql/annotate_grapher.rb +127 -0
- data/lib/conceptql/behaviors/drugish.rb +12 -0
- data/lib/conceptql/behaviors/labish.rb +13 -0
- data/lib/conceptql/behaviors/metadatable.rb +156 -71
- data/lib/conceptql/behaviors/provenanceable.rb +30 -0
- data/lib/conceptql/cli.rb +81 -37
- data/lib/conceptql/database.rb +42 -0
- data/lib/conceptql/date_adjuster.rb +22 -4
- data/lib/conceptql/fake_annotater.rb +129 -0
- data/lib/conceptql/knitter.rb +221 -0
- data/lib/conceptql/nodifier.rb +34 -23
- data/lib/conceptql/operators/after.rb +20 -3
- data/lib/conceptql/operators/any_overlap.rb +3 -1
- data/lib/conceptql/operators/before.rb +19 -3
- data/lib/conceptql/operators/binary_operator_operator.rb +24 -20
- data/lib/conceptql/operators/casting_operator.rb +39 -31
- data/lib/conceptql/operators/co_reported.rb +42 -0
- data/lib/conceptql/operators/complement.rb +21 -16
- data/lib/conceptql/operators/concurrent_within.rb +57 -0
- data/lib/conceptql/operators/condition_occurrence_source_vocabulary_operator.rb +34 -0
- data/lib/conceptql/operators/condition_occurrence_source_vocabulary_operator_union.rb +28 -0
- data/lib/conceptql/operators/condition_type.rb +12 -4
- data/lib/conceptql/operators/contains.rb +6 -2
- data/lib/conceptql/operators/count.rb +10 -2
- data/lib/conceptql/operators/cpt.rb +5 -2
- data/lib/conceptql/operators/cpt_or_hcpcs.rb +27 -0
- data/lib/conceptql/operators/date_range.rb +20 -8
- data/lib/conceptql/operators/death.rb +4 -2
- data/lib/conceptql/operators/drg.rb +42 -0
- data/lib/conceptql/operators/drug_type_concept.rb +11 -2
- data/lib/conceptql/operators/during.rb +4 -2
- data/lib/conceptql/operators/equal.rb +4 -1
- data/lib/conceptql/operators/except.rb +16 -4
- data/lib/conceptql/operators/filter.rb +6 -3
- data/lib/conceptql/operators/first.rb +3 -1
- data/lib/conceptql/operators/from.rb +32 -5
- data/lib/conceptql/operators/from_seer_visits.rb +11 -5
- data/lib/conceptql/operators/gender.rb +9 -2
- data/lib/conceptql/operators/hcpcs.rb +5 -2
- data/lib/conceptql/operators/icd10.rb +6 -15
- data/lib/conceptql/operators/icd10_pcs.rb +28 -0
- data/lib/conceptql/operators/icd9.rb +6 -15
- data/lib/conceptql/operators/icd9_procedure.rb +5 -2
- data/lib/conceptql/operators/intersect.rb +15 -10
- data/lib/conceptql/operators/invalid.rb +36 -0
- data/lib/conceptql/operators/last.rb +3 -1
- data/lib/conceptql/operators/loinc.rb +5 -2
- data/lib/conceptql/operators/medcode.rb +5 -16
- data/lib/conceptql/operators/medcode_procedure.rb +3 -2
- data/lib/conceptql/operators/ndc.rb +5 -2
- data/lib/conceptql/operators/numeric.rb +30 -11
- data/lib/conceptql/operators/observation_by_enttype.rb +5 -2
- data/lib/conceptql/operators/observation_period.rb +6 -4
- data/lib/conceptql/operators/occurrence.rb +47 -11
- data/lib/conceptql/operators/one_in_two_out.rb +96 -33
- data/lib/conceptql/operators/operator.rb +628 -95
- data/lib/conceptql/operators/overlapped_by.rb +8 -5
- data/lib/conceptql/operators/overlaps.rb +7 -5
- data/lib/conceptql/operators/pass_thru.rb +12 -2
- data/lib/conceptql/operators/person.rb +7 -5
- data/lib/conceptql/operators/person_filter.rb +5 -1
- data/lib/conceptql/operators/place_of_service_code.rb +12 -5
- data/lib/conceptql/operators/place_of_service_filter.rb +47 -0
- data/lib/conceptql/operators/procedure_occurrence.rb +4 -2
- data/lib/conceptql/operators/prodcode.rb +5 -2
- data/lib/conceptql/operators/provenance.rb +66 -0
- data/lib/conceptql/operators/provider_filter.rb +36 -0
- data/lib/conceptql/operators/race.rb +11 -4
- data/lib/conceptql/operators/read.rb +149 -0
- data/lib/conceptql/operators/recall.rb +42 -7
- data/lib/conceptql/operators/revenue_code.rb +40 -0
- data/lib/conceptql/operators/rxnorm.rb +5 -1
- data/lib/conceptql/operators/snomed.rb +3 -2
- data/lib/conceptql/operators/source_vocabulary_operator.rb +44 -14
- data/lib/conceptql/operators/standard_vocabulary_operator.rb +36 -15
- data/lib/conceptql/operators/started_by.rb +2 -1
- data/lib/conceptql/operators/sum.rb +7 -1
- data/lib/conceptql/operators/temporal_operator.rb +75 -9
- data/lib/conceptql/operators/time_window.rb +13 -23
- data/lib/conceptql/operators/to_seer_visits.rb +6 -1
- data/lib/conceptql/operators/trim_date_end.rb +20 -12
- data/lib/conceptql/operators/trim_date_start.rb +22 -12
- data/lib/conceptql/operators/union.rb +39 -2
- data/lib/conceptql/operators/visit_occurrence.rb +5 -3
- data/lib/conceptql/operators/vocabulary_operator.rb +45 -0
- data/lib/conceptql/query.rb +68 -22
- data/lib/conceptql/query_modifiers/drug_query_modifier.rb +45 -0
- data/lib/conceptql/query_modifiers/pos_query_modifier.rb +31 -0
- data/lib/conceptql/query_modifiers/query_modifier.rb +16 -0
- data/lib/conceptql/scope.rb +169 -31
- data/lib/conceptql/sql_formatter.rb +22 -0
- data/lib/conceptql/version.rb +1 -1
- data/test/all.rb +3 -0
- data/test/all_operations_test.rb +45 -0
- data/test/code_list_test.rb +23 -0
- data/test/data/omopv4/care_site.csv +0 -0
- data/test/data/omopv4/cohort.csv +0 -0
- data/test/data/omopv4/condition_era.csv +0 -0
- data/test/data/omopv4/condition_occurrence.csv +34044 -0
- data/test/data/omopv4/death.csv +1 -0
- data/test/data/omopv4/drug_cost.csv +0 -0
- data/test/data/omopv4/drug_era.csv +0 -0
- data/test/data/omopv4/drug_exposure.csv +2 -0
- data/test/data/omopv4/location.csv +0 -0
- data/test/data/omopv4/observation.csv +2 -0
- data/test/data/omopv4/observation_period.csv +1 -0
- data/test/data/omopv4/organization.csv +0 -0
- data/test/data/omopv4/payer_plan_period.csv +0 -0
- data/test/data/omopv4/person.csv +250 -0
- data/test/data/omopv4/procedure_cost.csv +0 -0
- data/test/data/omopv4/procedure_occurrence.csv +35099 -0
- data/test/data/omopv4/provider.csv +0 -0
- data/test/data/omopv4/visit_occurrence.csv +14931 -0
- data/test/data/omopv4_plus/care_site.csv +0 -0
- data/test/data/omopv4_plus/cohort.csv +0 -0
- data/test/data/omopv4_plus/concept.csv +352 -0
- data/test/data/omopv4_plus/condition_era.csv +0 -0
- data/test/data/omopv4_plus/condition_occurrence.csv +46673 -0
- data/test/data/omopv4_plus/death.csv +9 -0
- data/test/data/omopv4_plus/drug_cost.csv +13921 -0
- data/test/data/omopv4_plus/drug_era.csv +0 -0
- data/test/data/omopv4_plus/drug_exposure.csv +13921 -0
- data/test/data/omopv4_plus/headers/care_site.csv +1 -0
- data/test/data/omopv4_plus/headers/cohort.csv +1 -0
- data/test/data/omopv4_plus/headers/concept.csv +1 -0
- data/test/data/omopv4_plus/headers/condition_era.csv +1 -0
- data/test/data/omopv4_plus/headers/condition_occurrence.csv +1 -0
- data/test/data/omopv4_plus/headers/death.csv +1 -0
- data/test/data/omopv4_plus/headers/drug_cost.csv +1 -0
- data/test/data/omopv4_plus/headers/drug_era.csv +1 -0
- data/test/data/omopv4_plus/headers/drug_exposure.csv +1 -0
- data/test/data/omopv4_plus/headers/location.csv +1 -0
- data/test/data/omopv4_plus/headers/observation.csv +1 -0
- data/test/data/omopv4_plus/headers/observation_period.csv +1 -0
- data/test/data/omopv4_plus/headers/organization.csv +1 -0
- data/test/data/omopv4_plus/headers/payer_plan_period.csv +1 -0
- data/test/data/omopv4_plus/headers/person.csv +1 -0
- data/test/data/omopv4_plus/headers/procedure_cost.csv +1 -0
- data/test/data/omopv4_plus/headers/procedure_occurrence.csv +1 -0
- data/test/data/omopv4_plus/headers/provider.csv +1 -0
- data/test/data/omopv4_plus/headers/source_to_concept_map.csv +1 -0
- data/test/data/omopv4_plus/headers/visit_occurrence.csv +1 -0
- data/test/data/omopv4_plus/headers/vocabulary.csv +1 -0
- data/test/data/omopv4_plus/location.csv +0 -0
- data/test/data/omopv4_plus/observation.csv +0 -0
- data/test/data/omopv4_plus/observation_period.csv +147 -0
- data/test/data/omopv4_plus/organization.csv +736 -0
- data/test/data/omopv4_plus/payer_plan_period.csv +808 -0
- data/test/data/omopv4_plus/person.csv +250 -0
- data/test/data/omopv4_plus/procedure_cost.csv +20123 -0
- data/test/data/omopv4_plus/procedure_occurrence.csv +27273 -0
- data/test/data/omopv4_plus/provider.csv +10193 -0
- data/test/data/omopv4_plus/source_to_concept_map.csv +285 -0
- data/test/data/omopv4_plus/visit_occurrence.csv +45125 -0
- data/test/data/omopv4_plus/vocabulary.csv +60 -0
- data/test/db.rb +15 -0
- data/test/db_setup.rb +408 -0
- data/test/db_teardown.rb +33 -0
- data/test/fake_annotater_test.rb +31 -0
- data/test/helper.rb +129 -0
- data/test/knitter/conceptql.md.cql +39 -0
- data/test/knitter/conceptql.md.expect +43 -0
- data/test/knitter/empty.md.cql +0 -0
- data/test/knitter/except.md.cql +13 -0
- data/test/knitter/except.md.expect +14 -0
- data/test/knitter/fake.md.cql +10 -0
- data/test/knitter/fake.md.expect +13 -0
- data/test/knitter/many.md.cql +7 -0
- data/test/knitter/many.md.expect +14 -0
- data/test/knitter/no_conceptql.md.cql +36 -0
- data/test/knitter/title.md.cql +12 -0
- data/test/knitter/title.md.expect +15 -0
- data/test/knitter/union.md.cql +11 -0
- data/test/knitter/union.md.expect +14 -0
- data/test/knitter_test.rb +69 -0
- data/test/query_test.rb +36 -0
- data/test/results/omopv4/after/anno_1 +25 -0
- data/test/results/omopv4/after/anno_2 +48 -0
- data/test/results/omopv4/after/anno_3 +34 -0
- data/test/results/omopv4/after/anno_4 +60 -0
- data/test/results/omopv4/after/anno_5 +68 -0
- data/test/results/omopv4/after/anno_6 +60 -0
- data/test/results/omopv4/after/crit_at_least +7 -0
- data/test/results/omopv4/after/crit_basic +32 -0
- data/test/results/omopv4/after/crit_occurrences +12 -0
- data/test/results/omopv4/after/crit_within +6 -0
- data/test/results/omopv4/any_overlap/crit_basic1 +15 -0
- data/test/results/omopv4/any_overlap/crit_basic2 +15 -0
- data/test/results/omopv4/any_overlap/crit_occurrences1 +2 -0
- data/test/results/omopv4/any_overlap/crit_occurrences2 +15 -0
- data/test/results/omopv4/any_overlap/crit_within +8 -0
- data/test/results/omopv4/before/crit_at_least +6 -0
- data/test/results/omopv4/before/crit_basic1 +48 -0
- data/test/results/omopv4/before/crit_basic2 +7 -0
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- data/test/results/omopv4/before/crit_within +18 -0
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- data/test/statements/complex/anno_1 +29 -0
- data/test/statements/complex/crit_1 +278 -0
- data/test/statements/complex/crit_2 +43 -0
- data/test/statements/complex/crit_3 +54 -0
- data/test/statements/complex/crit_4 +17 -0
- data/test/statements/complex/crit_5 +17 -0
- data/test/statements/complex/crit_6 +20 -0
- data/test/statements/complex/crit_7 +14 -0
- data/test/statements/complex/crit_out_of_order_ctes +39 -0
- data/test/statements/complex/scanno_1 +1508 -0
- data/test/statements/concurrent_within/crit_icd9 +11 -0
- data/test/statements/concurrent_within/crit_icd9_and_place_of_service +15 -0
- data/test/statements/concurrent_within/crit_negative_start +15 -0
- data/test/statements/condition_type/anno_icd9 +7 -0
- data/test/statements/condition_type/count_condition_era +4 -0
- data/test/statements/condition_type/count_condition_era_30_day_window +4 -0
- data/test/statements/condition_type/count_ehr_problem_list +4 -0
- data/test/statements/condition_type/count_era_0 +4 -0
- data/test/statements/condition_type/count_inpatient +4 -0
- data/test/statements/condition_type/count_inpatient_detail +4 -0
- data/test/statements/condition_type/count_inpatient_header +4 -0
- data/test/statements/condition_type/count_inpatient_header_2 +4 -0
- data/test/statements/condition_type/count_inpatient_header_3 +4 -0
- data/test/statements/condition_type/count_inpatient_header_4 +4 -0
- data/test/statements/condition_type/count_inpatient_header_5 +4 -0
- data/test/statements/condition_type/count_inpatient_outpatient_detail +5 -0
- data/test/statements/condition_type/count_inpatient_primary +4 -0
- data/test/statements/condition_type/count_inpatient_primary_or_first +4 -0
- data/test/statements/condition_type/count_outpatient +4 -0
- data/test/statements/condition_type/count_outpatient_detail +4 -0
- data/test/statements/condition_type/count_outpatient_header +4 -0
- data/test/statements/condition_type/count_outpatient_primary +4 -0
- data/test/statements/condition_type/count_primary +4 -0
- data/test/statements/contains/crit_1 +16 -0
- data/test/statements/contains/crit_2 +16 -0
- data/test/statements/contains/crit_3 +16 -0
- data/test/statements/count/anno_multiple_upstreams +11 -0
- data/test/statements/count/anno_no_upstream1 +3 -0
- data/test/statements/count/anno_no_upstream2 +4 -0
- data/test/statements/count/crit_icd9_ndc +15 -0
- data/test/statements/count/crit_ndc +11 -0
- data/test/statements/count/crit_person +7 -0
- data/test/statements/cpt/anno_icd9_upstream +7 -0
- data/test/statements/cpt/anno_invalid_code +5 -0
- data/test/statements/cpt/count_1 +4 -0
- data/test/statements/cpt/crit_1 +4 -0
- data/test/statements/cpt/scanno_1 +4 -0
- data/test/statements/cpt_or_hcpcs/anno_bad_format +7 -0
- data/test/statements/cpt_or_hcpcs/count_1 +5 -0
- data/test/statements/cpt_or_hcpcs/crit_1 +5 -0
- data/test/statements/date_range/anno_1 +7 -0
- data/test/statements/date_range/anno_extra_argument +8 -0
- data/test/statements/date_range/anno_invalid_argument +7 -0
- data/test/statements/date_range/anno_missing_argument1 +6 -0
- data/test/statements/date_range/anno_missing_argument2 +6 -0
- data/test/statements/date_range/anno_no_upstreams +11 -0
- data/test/statements/date_range/count_1 +7 -0
- data/test/statements/date_range/count_2 +7 -0
- data/test/statements/death/anno_multiple_upstreams +10 -0
- data/test/statements/death/anno_no_upstreams +4 -0
- data/test/statements/death/crit_basic +3 -0
- data/test/statements/death/crit_person +7 -0
- data/test/statements/drug_type_concept/anno_has_upstreams +8 -0
- data/test/statements/drug_type_concept/anno_no_arguments +3 -0
- data/test/statements/drug_type_concept/crit_basic1 +4 -0
- data/test/statements/drug_type_concept/crit_basic2 +4 -0
- data/test/statements/during/crit_1 +16 -0
- data/test/statements/during/crit_2 +16 -0
- data/test/statements/equal/crit_1 +17 -0
- data/test/statements/equal/crit_2 +21 -0
- data/test/statements/except/anno_1 +13 -0
- data/test/statements/except/anno_2 +14 -0
- data/test/statements/except/count_complex +31 -0
- data/test/statements/except/crit_412_cpt +13 -0
- data/test/statements/except/crit_412_inpatient +13 -0
- data/test/statements/filter/crit_1 +15 -0
- data/test/statements/first/anno_argument +4 -0
- data/test/statements/first/anno_no_upstream +3 -0
- data/test/statements/first/crit_cpt +7 -0
- data/test/statements/first/crit_icd9 +7 -0
- data/test/statements/first/crit_union +14 -0
- data/test/statements/from/anno_has_upstreams +7 -0
- data/test/statements/from/anno_multiple_arguments +5 -0
- data/test/statements/from_seer_visits/anno_multiple_upstreams +17 -0
- data/test/statements/from_seer_visits/anno_no_upstream +3 -0
- data/test/statements/from_seer_visits/crit_1 +10 -0
- data/test/statements/from_seer_visits/crit_2 +11 -0
- data/test/statements/from_seer_visits/crit_3 +11 -0
- data/test/statements/from_seer_visits/crit_4 +12 -0
- data/test/statements/gender/anno_has_upstreams +7 -0
- data/test/statements/gender/crit_male +4 -0
- data/test/statements/hcpcs/anno_bad_format +6 -0
- data/test/statements/hcpcs/crit_A0382 +4 -0
- data/test/statements/icd10/anno_bad_format +5 -0
- data/test/statements/icd10/anno_has_upstreams +7 -0
- data/test/statements/icd10/crit_1 +4 -0
- data/test/statements/icd10pcs/anno_bad_format +6 -0
- data/test/statements/icd10pcs/anno_has_upstreams +7 -0
- data/test/statements/icd10pcs/crit_1 +4 -0
- data/test/statements/icd9/anno_empty_label +7 -0
- data/test/statements/icd9/anno_invalid_code +4 -0
- data/test/statements/icd9/anno_valid_code +4 -0
- data/test/statements/icd9/crit_1 +4 -0
- data/test/statements/icd9_procedure/crit_1 +4 -0
- data/test/statements/intersect/anno_412_inpatient +11 -0
- data/test/statements/intersect/anno_has_arguments +4 -0
- data/test/statements/intersect/anno_no_upstream +3 -0
- data/test/statements/intersect/crit_412_inpatient +11 -0
- data/test/statements/intersect/crit_412_male +11 -0
- data/test/statements/intersect/crit_complex +19 -0
- data/test/statements/invalid/anno_bad_op +13 -0
- data/test/statements/invalid/scanno_1 +7 -0
- data/test/statements/last/crit_icd9 +7 -0
- data/test/statements/loinc/crit_basic +4 -0
- data/test/statements/ndc/crit_basic +4 -0
- data/test/statements/ndc/results_1 +4 -0
- data/test/statements/numeric/anno_multiple_upstreams +11 -0
- data/test/statements/numeric/num_values_1 +4 -0
- data/test/statements/numeric/num_values_2 +8 -0
- data/test/statements/numeric/num_values_3 +8 -0
- data/test/statements/observation_period/anno_has_arguments +8 -0
- data/test/statements/observation_period/anno_multiple_upstreams +11 -0
- data/test/statements/observation_period/count_all_periods +4 -0
- data/test/statements/observation_period/crit_female +7 -0
- data/test/statements/observation_period/crit_icd9 +7 -0
- data/test/statements/observation_period/crit_male +7 -0
- data/test/statements/occurrence/anno_no_upstream +3 -0
- data/test/statements/occurrence/count_412_410 +17 -0
- data/test/statements/occurrence/crit_1 +8 -0
- data/test/statements/occurrence/crit_2 +11 -0
- data/test/statements/occurrence/crit_3 +11 -0
- data/test/statements/one_in_two_out/anno_has_arguments +8 -0
- data/test/statements/one_in_two_out/anno_multiple_upstreams +15 -0
- data/test/statements/one_in_two_out/anno_no_upstream +7 -0
- data/test/statements/one_in_two_out/count_1 +10 -0
- data/test/statements/one_in_two_out/count_same_as_1 +11 -0
- data/test/statements/one_in_two_out/crit_hcpcs +10 -0
- data/test/statements/one_in_two_out/crit_icd9 +11 -0
- data/test/statements/one_in_two_out/results_1 +9 -0
- data/test/statements/one_in_two_out/results_2 +9 -0
- data/test/statements/overlapped_by/crit_1 +16 -0
- data/test/statements/overlapped_by/crit_2 +16 -0
- data/test/statements/overlapped_by/crit_3 +16 -0
- data/test/statements/overlapped_by/crit_4 +16 -0
- data/test/statements/overlaps/crit_1 +16 -0
- data/test/statements/overlaps/crit_2 +16 -0
- data/test/statements/overlaps/crit_3 +16 -0
- data/test/statements/overlaps/crit_4 +16 -0
- data/test/statements/person/anno_has_arguments +4 -0
- data/test/statements/person/anno_multiple_upstreams +11 -0
- data/test/statements/person/count_2 +3 -0
- data/test/statements/person/crit_1 +7 -0
- data/test/statements/person_filter/count_1 +20 -0
- data/test/statements/person_filter/crit_1 +20 -0
- data/test/statements/person_filter/crit_2 +13 -0
- data/test/statements/person_filter/crit_3 +13 -0
- data/test/statements/person_filter/crit_4 +13 -0
- data/test/statements/place_of_service_code/anno_has_upstreams +8 -0
- data/test/statements/place_of_service_code/anno_no_arguments +3 -0
- data/test/statements/place_of_service_code/crit_basic +4 -0
- data/test/statements/place_of_service_filter/anno_1 +8 -0
- data/test/statements/procedure_occurrence/anno_has_arguments +8 -0
- data/test/statements/procedure_occurrence/anno_multiple_upstreams +11 -0
- data/test/statements/procedure_occurrence/count_gender +7 -0
- data/test/statements/procedure_occurrence/count_icd9 +7 -0
- data/test/statements/procedure_occurrence/count_started_by +19 -0
- data/test/statements/provenance/anno_1 +8 -0
- data/test/statements/provenance/anno_bad_keyword +10 -0
- data/test/statements/provenance/count_1 +8 -0
- data/test/statements/provenance/count_2 +8 -0
- data/test/statements/provider_filter/anno_1 +10 -0
- data/test/statements/race/anno_1 +8 -0
- data/test/statements/race/anno_2 +3 -0
- data/test/statements/race/crit_1 +4 -0
- data/test/statements/read/anno_1 +4 -0
- data/test/statements/read/crit_1 +8 -0
- data/test/statements/recall/anno_1 +16 -0
- data/test/statements/recall/anno_2 +18 -0
- data/test/statements/recall/anno_3 +4 -0
- data/test/statements/recall/anno_4 +3 -0
- data/test/statements/recall/anno_5 +5 -0
- data/test/statements/recall/anno_6 +107 -0
- data/test/statements/recall/crit_1 +17 -0
- data/test/statements/recall/crit_2 +14 -0
- data/test/statements/recall/crit_3 +16 -0
- data/test/statements/recall/crit_cte_1 +17 -0
- data/test/statements/recall/crit_cte_2 +17 -0
- data/test/statements/recall/crit_nested_perm_0 +28 -0
- data/test/statements/revenue_code/crit_1 +4 -0
- data/test/statements/revenue_code/crit_basic +4 -0
- data/test/statements/revenue_code/domains_1 +4 -0
- data/test/statements/revenue_code/domains_drg100 +4 -0
- data/test/statements/rxnorm/crit_1 +4 -0
- data/test/statements/snomed/crit_1 +4 -0
- data/test/statements/started_by/crit_1 +16 -0
- data/test/statements/started_by/crit_2 +16 -0
- data/test/statements/started_by/crit_3 +16 -0
- data/test/statements/sum/anno_1 +3 -0
- data/test/statements/sum/anno_2 +8 -0
- data/test/statements/sum/num_1 +11 -0
- data/test/statements/sum/num_2 +15 -0
- data/test/statements/sum/num_3 +7 -0
- data/test/statements/time_window/anno_1 +7 -0
- data/test/statements/time_window/anno_2 +11 -0
- data/test/statements/time_window/anno_3 +11 -0
- data/test/statements/time_window/anno_4 +12 -0
- data/test/statements/time_window/anno_5 +15 -0
- data/test/statements/time_window/crit_1 +11 -0
- data/test/statements/time_window/crit_2 +11 -0
- data/test/statements/time_window/crit_3 +11 -0
- data/test/statements/time_window/crit_4 +11 -0
- data/test/statements/trim_date_end/crit_1 +16 -0
- data/test/statements/trim_date_end/crit_2 +16 -0
- data/test/statements/trim_date_end/crit_3 +16 -0
- data/test/statements/trim_date_end/crit_at_least +17 -0
- data/test/statements/trim_date_end/crit_occurrences_1 +17 -0
- data/test/statements/trim_date_end/crit_occurrences_2 +17 -0
- data/test/statements/trim_date_end/crit_within +17 -0
- data/test/statements/trim_date_start/crit_1 +16 -0
- data/test/statements/trim_date_start/crit_2 +16 -0
- data/test/statements/trim_date_start/crit_3 +16 -0
- data/test/statements/trim_date_start/crit_at_least +17 -0
- data/test/statements/trim_date_start/crit_occurrences_1 +17 -0
- data/test/statements/trim_date_start/crit_occurrences_2 +17 -0
- data/test/statements/trim_date_start/crit_within +17 -0
- data/test/statements/union/anno_1 +11 -0
- data/test/statements/union/anno_2 +18 -0
- data/test/statements/union/anno_3 +3 -0
- data/test/statements/union/anno_4 +4 -0
- data/test/statements/union/anno_5 +7 -0
- data/test/statements/union/anno_6 +10 -0
- data/test/statements/union/count_1 +11 -0
- data/test/statements/union/count_2 +11 -0
- data/test/statements/union/count_3 +15 -0
- data/test/statements/union/count_4 +18 -0
- data/test/statements/union/count_5 +18 -0
- data/test/statements/union/scanno_1 +3 -0
- data/test/statements/union/scanno_2 +18 -0
- data/test/statements/visit_occurrence/anno_1 +11 -0
- data/test/statements/visit_occurrence/anno_2 +8 -0
- data/test/statements/visit_occurrence/crit_1 +7 -0
- data/test/statements/visit_occurrence/crit_2 +7 -0
- data/test/statements/visit_occurrence/crit_3 +3 -0
- metadata +2016 -150
- data/lib/conceptql/behaviors/debuggable.rb +0 -70
- data/lib/conceptql/behaviors/dottable.rb +0 -103
- data/lib/conceptql/behaviors/preppable.rb +0 -20
- data/lib/conceptql/converter.rb +0 -65
- data/lib/conceptql/debugger.rb +0 -48
- data/lib/conceptql/fake_grapher.rb +0 -20
- data/lib/conceptql/graph.rb +0 -52
- data/lib/conceptql/graph_nodifier.rb +0 -203
- data/lib/conceptql/operators/concept.rb +0 -70
- data/lib/conceptql/operators/snomed_condition.rb +0 -26
- data/lib/conceptql/operators/visit.rb +0 -15
- data/lib/conceptql/tree.rb +0 -53
- data/lib/conceptql/utils/temp_table.rb +0 -72
- data/spec/conceptql/behaviors/dottable_spec.rb +0 -99
- data/spec/conceptql/converter_spec.rb +0 -51
- data/spec/conceptql/date_adjuster_spec.rb +0 -68
- data/spec/conceptql/operators/after_spec.rb +0 -16
- data/spec/conceptql/operators/before_spec.rb +0 -16
- data/spec/conceptql/operators/casting_operator_spec.rb +0 -68
- data/spec/conceptql/operators/complement_spec.rb +0 -15
- data/spec/conceptql/operators/concept_spec.rb +0 -40
- data/spec/conceptql/operators/condition_type_spec.rb +0 -128
- data/spec/conceptql/operators/contains_spec.rb +0 -19
- data/spec/conceptql/operators/cpt_spec.rb +0 -29
- data/spec/conceptql/operators/date_range_spec.rb +0 -33
- data/spec/conceptql/operators/death_spec.rb +0 -10
- data/spec/conceptql/operators/during_spec.rb +0 -30
- data/spec/conceptql/operators/except_spec.rb +0 -15
- data/spec/conceptql/operators/first_spec.rb +0 -35
- data/spec/conceptql/operators/from_spec.rb +0 -13
- data/spec/conceptql/operators/gender_spec.rb +0 -27
- data/spec/conceptql/operators/hcpcs_spec.rb +0 -29
- data/spec/conceptql/operators/icd10_spec.rb +0 -34
- data/spec/conceptql/operators/icd9_procedure_spec.rb +0 -29
- data/spec/conceptql/operators/icd9_spec.rb +0 -34
- data/spec/conceptql/operators/intersect_spec.rb +0 -28
- data/spec/conceptql/operators/last_spec.rb +0 -36
- data/spec/conceptql/operators/loinc_spec.rb +0 -29
- data/spec/conceptql/operators/medcode_procedure_spec.rb +0 -34
- data/spec/conceptql/operators/medcode_spec.rb +0 -34
- data/spec/conceptql/operators/observation_period_spec.rb +0 -10
- data/spec/conceptql/operators/occurrence_spec.rb +0 -87
- data/spec/conceptql/operators/overlapped_by_spec.rb +0 -32
- data/spec/conceptql/operators/overlaps_spec.rb +0 -21
- data/spec/conceptql/operators/person_filter_spec.rb +0 -15
- data/spec/conceptql/operators/person_spec.rb +0 -10
- data/spec/conceptql/operators/place_of_service_code_spec.rb +0 -24
- data/spec/conceptql/operators/procedure_occurrence_spec.rb +0 -10
- data/spec/conceptql/operators/prodcode_spec.rb +0 -35
- data/spec/conceptql/operators/query_double.rb +0 -20
- data/spec/conceptql/operators/query_double_spec.rb +0 -7
- data/spec/conceptql/operators/race_spec.rb +0 -21
- data/spec/conceptql/operators/rxnorm_spec.rb +0 -29
- data/spec/conceptql/operators/snomed_spec.rb +0 -29
- data/spec/conceptql/operators/source_vocabulary_operator_spec.rb +0 -35
- data/spec/conceptql/operators/standard_vocabulary_operator_spec.rb +0 -35
- data/spec/conceptql/operators/started_by_spec.rb +0 -22
- data/spec/conceptql/operators/temporal_operator_spec.rb +0 -51
- data/spec/conceptql/operators/time_window_spec.rb +0 -77
- data/spec/conceptql/operators/union_spec.rb +0 -21
- data/spec/conceptql/operators/visit_occurrence_spec.rb +0 -10
- data/spec/conceptql/query_spec.rb +0 -22
- data/spec/conceptql/tree_spec.rb +0 -50
- data/spec/doubles/stream_for_casting_double.rb +0 -9
- data/spec/doubles/stream_for_occurrence_double.rb +0 -25
- data/spec/doubles/stream_for_temporal_double.rb +0 -6
- data/spec/spec_helper.rb +0 -102
@@ -0,0 +1,57 @@
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require_relative 'operator'
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require_relative '../date_adjuster'
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module ConceptQL
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module Operators
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class ConcurrentWithin < Operator
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register __FILE__
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desc 'Filters each upstream to only include rows where there are matching entries in each of the other upstreams.'
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option :start, type: :string
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option :end, type: :string
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allows_many_upstreams
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validate_at_least_one_upstream
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validate_no_arguments
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validate_option DateAdjuster::VALID_INPUT, :start, :end
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category "Modify Data"
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basic_type :temporal
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default_query_columns
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def query(db)
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datasets = upstreams.map do |stream|
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stream.evaluate(db)
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end
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return datasets.first.from_self if datasets.length == 1
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adjusted_start_date = DateAdjuster.new(options[:start]).adjust(:l__start_date, true)
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adjusted_end_date = DateAdjuster.new(options[:end]).adjust(:l__end_date)
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datasets = datasets.map do |ds|
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matching = ds.from_self(:alias=>:l)
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(datasets - [ds]).each do |other|
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other = other
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.from_self(:alias=>:r)
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.where(adjusted_start_date <= :r__start_date)
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.where(adjusted_end_date >= :r__end_date)
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.select(:person_id)
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matching = matching.where(:person_id=>other)
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end
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matching
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end
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ds, *rest = datasets
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rest.each do |other|
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ds = ds.union(other, :from_self=>nil)
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end
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ds.from_self
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end
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end
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end
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end
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require_relative 'source_vocabulary_operator'
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module ConceptQL
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module Operators
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class ConditionOccurrenceSourceVocabularyOperator < SourceVocabularyOperator
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def unionable?(other)
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other.is_a?(ConditionOccurrenceSourceVocabularyOperator)
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end
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def union(other)
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if other.is_a?(self.class)
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dup_values(values + other.values)
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elsif other.is_a?(ConditionOccurrenceSourceVocabularyOperatorUnion)
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other.union(self)
|
15
|
+
else
|
16
|
+
ConditionOccurrenceSourceVocabularyOperatorUnion.new(nodifier, self, other)
|
17
|
+
end
|
18
|
+
end
|
19
|
+
|
20
|
+
def table
|
21
|
+
:condition_occurrence
|
22
|
+
end
|
23
|
+
|
24
|
+
def source_column
|
25
|
+
:condition_source_value
|
26
|
+
end
|
27
|
+
|
28
|
+
def concept_column
|
29
|
+
:condition_concept_id
|
30
|
+
end
|
31
|
+
end
|
32
|
+
end
|
33
|
+
end
|
34
|
+
|
@@ -0,0 +1,28 @@
|
|
1
|
+
require_relative 'condition_occurrence_source_vocabulary_operator'
|
2
|
+
|
3
|
+
module ConceptQL
|
4
|
+
module Operators
|
5
|
+
class ConditionOccurrenceSourceVocabularyOperatorUnion < ConditionOccurrenceSourceVocabularyOperator
|
6
|
+
def union(other)
|
7
|
+
if other.is_a?(self.class)
|
8
|
+
dup_values(values + other.values)
|
9
|
+
else
|
10
|
+
same, different = values.partition{|x| x.is_a?(other.class)}
|
11
|
+
case same.length
|
12
|
+
when 0
|
13
|
+
dup_values(different + [other])
|
14
|
+
when 1
|
15
|
+
dup_values(different + [same.first.union(other)])
|
16
|
+
else
|
17
|
+
raise "multiple ConditionOccurrenceSourceVocabularyOperator subclass instances of same class in union"
|
18
|
+
end
|
19
|
+
end
|
20
|
+
end
|
21
|
+
|
22
|
+
def conditions(db)
|
23
|
+
Sequel.|(*values.map { |v| v.conditions(db) })
|
24
|
+
end
|
25
|
+
end
|
26
|
+
end
|
27
|
+
end
|
28
|
+
|
@@ -10,12 +10,18 @@ module ConceptQL
|
|
10
10
|
#
|
11
11
|
# Multiple types can be specified at once
|
12
12
|
class ConditionType < Operator
|
13
|
-
|
13
|
+
register __FILE__
|
14
|
+
|
15
|
+
desc 'Returns all conditions that match the given set of Condition Types.'
|
14
16
|
argument :condition_types, type: :codelist, vocab: 'Condition Type'
|
15
|
-
category
|
16
|
-
|
17
|
+
category "Select by Property"
|
18
|
+
basic_type :selection
|
19
|
+
predominant_domains :condition_occurrence
|
20
|
+
query_columns :condition_occurrence
|
21
|
+
validate_no_upstreams
|
22
|
+
validate_at_least_one_argument
|
17
23
|
|
18
|
-
def
|
24
|
+
def domain
|
19
25
|
:condition_occurrence
|
20
26
|
end
|
21
27
|
|
@@ -32,6 +38,7 @@ module ConceptQL
|
|
32
38
|
end
|
33
39
|
|
34
40
|
def to_concept_id(ctype)
|
41
|
+
return ctype.to_i unless ctype.to_i.zero?
|
35
42
|
ctype = ctype.to_s.downcase
|
36
43
|
position = nil
|
37
44
|
if ctype =~ /(\d|_primary)$/ && ctype.count('_') > 1
|
@@ -59,6 +66,7 @@ module ConceptQL
|
|
59
66
|
hash[:primary] = %w(inpatient_detail inpatient_header outpatient_detail outpatient_header).map { |w| hash[w.to_sym].first }
|
60
67
|
hash[:outpatient_primary] = %w(outpatient_detail outpatient_header).map { |w| hash[w.to_sym].first }
|
61
68
|
hash[:inpatient_primary] = %w(inpatient_detail inpatient_header).map { |w| hash[w.to_sym].first }
|
69
|
+
hash[:inpatient_primary_or_first] = %w(inpatient_detail inpatient_header).map { |w| hash[w.to_sym][0..1]}.flatten
|
62
70
|
hash[:inpatient] = hash[:inpatient_detail] + hash[:inpatient_header]
|
63
71
|
hash[:outpatient] = hash[:outpatient_detail] + hash[:outpatient_header]
|
64
72
|
hash[:condition_era] = hash[:condition_era_0_day_window] + hash[:condition_era_30_day_window]
|
@@ -3,12 +3,16 @@ require_relative 'temporal_operator'
|
|
3
3
|
module ConceptQL
|
4
4
|
module Operators
|
5
5
|
class Contains < TemporalOperator
|
6
|
+
register __FILE__
|
7
|
+
|
6
8
|
desc <<-EOF
|
7
|
-
|
9
|
+
If a result in the left hand results (LHR) has a start_date on or before and an end_date on or after a result in the right hand results (RHR), it is passed through.
|
8
10
|
L--X-L
|
9
11
|
R-----R
|
10
12
|
L------Y--------L
|
11
|
-
|
13
|
+
|
14
|
+
EOF
|
15
|
+
|
12
16
|
def where_clause
|
13
17
|
[Proc.new { l__start_date <= r__start_date}, Proc.new { r__end_date <= l__end_date }]
|
14
18
|
end
|
@@ -3,13 +3,21 @@ require_relative 'pass_thru'
|
|
3
3
|
module ConceptQL
|
4
4
|
module Operators
|
5
5
|
class Count < PassThru
|
6
|
+
register __FILE__
|
7
|
+
|
6
8
|
desc 'Counts the number of results the exactly match across all columns.'
|
7
9
|
allows_one_upstream
|
10
|
+
validate_one_upstream
|
11
|
+
validate_no_arguments
|
12
|
+
require_column :value_as_number
|
13
|
+
|
14
|
+
def query_cols
|
15
|
+
dynamic_columns - [:value_as_number] + [:value_as_number]
|
16
|
+
end
|
8
17
|
|
9
18
|
def query(db)
|
10
19
|
db.from(unioned(db))
|
11
|
-
.
|
12
|
-
.select(*(COLUMNS - [:value_as_number]))
|
20
|
+
.select_group(*(query_cols - [:value_as_number]))
|
13
21
|
.select_append{count(1).as(:value_as_number)}
|
14
22
|
.from_self
|
15
23
|
end
|
@@ -3,10 +3,13 @@ require_relative 'standard_vocabulary_operator'
|
|
3
3
|
module ConceptQL
|
4
4
|
module Operators
|
5
5
|
class Cpt < StandardVocabularyOperator
|
6
|
+
register __FILE__
|
7
|
+
|
6
8
|
preferred_name 'CPT'
|
7
|
-
desc 'Searches the procedure_occurrence table for all procedures with matching CPT codes'
|
8
9
|
argument :cpts, type: :codelist, vocab: 'CPT4'
|
9
|
-
|
10
|
+
predominant_domains :procedure_occurrence
|
11
|
+
|
12
|
+
codes_should_match(/^\w{5}$/)
|
10
13
|
|
11
14
|
def table
|
12
15
|
:procedure_occurrence
|
@@ -0,0 +1,27 @@
|
|
1
|
+
require_relative 'standard_vocabulary_operator'
|
2
|
+
|
3
|
+
module ConceptQL
|
4
|
+
module Operators
|
5
|
+
class CptOrHcpcs < StandardVocabularyOperator
|
6
|
+
register __FILE__
|
7
|
+
|
8
|
+
preferred_name 'CPT/HCPCS'
|
9
|
+
argument :codes, type: :codelist, vocab: ['CPT', 'HCPCS']
|
10
|
+
predominant_domains :procedure_occurrence
|
11
|
+
|
12
|
+
codes_should_match(/^\w{5}$/)
|
13
|
+
|
14
|
+
def table
|
15
|
+
:procedure_occurrence
|
16
|
+
end
|
17
|
+
|
18
|
+
def vocabulary_id
|
19
|
+
[4, 5]
|
20
|
+
end
|
21
|
+
|
22
|
+
def concept_column
|
23
|
+
:procedure_concept_id
|
24
|
+
end
|
25
|
+
end
|
26
|
+
end
|
27
|
+
end
|
@@ -8,23 +8,36 @@ module ConceptQL
|
|
8
8
|
# 'START' represents the first date of data in the data source,
|
9
9
|
# 'END' represents the last date of data in the data source,
|
10
10
|
class DateRange < Operator
|
11
|
+
register __FILE__
|
12
|
+
|
11
13
|
desc 'Used to represent a date literal.'
|
12
14
|
option :start, type: :string
|
13
15
|
option :end, type: :string
|
14
|
-
category
|
16
|
+
category "Select by Property"
|
17
|
+
basic_type :selection
|
18
|
+
validate_no_upstreams
|
19
|
+
validate_no_arguments
|
20
|
+
validate_option String, :start, :end
|
21
|
+
validate_required_options :start, :end
|
22
|
+
|
23
|
+
def query_cols
|
24
|
+
table_columns(:person) + [:criterion_domain, :criterion_id, :start_date, :end_date]
|
25
|
+
end
|
15
26
|
|
16
27
|
def query(db)
|
17
28
|
db.from(:person)
|
18
|
-
.select_append(Sequel.cast_string('person').as(:
|
29
|
+
.select_append(Sequel.cast_string('person').as(:criterion_domain))
|
19
30
|
.select_append(Sequel.expr(:person_id).as(:criterion_id))
|
20
|
-
.select_append(
|
31
|
+
.select_append(Sequel.as(cast_date(db, start_date(db)), :start_date),
|
32
|
+
Sequel.as(cast_date(db, end_date(db)), :end_date)).from_self
|
21
33
|
end
|
22
34
|
|
23
|
-
def
|
35
|
+
def domains(db)
|
24
36
|
[:person]
|
25
37
|
end
|
26
38
|
|
27
39
|
private
|
40
|
+
|
28
41
|
def start_date(db)
|
29
42
|
date_from(db, options[:start])
|
30
43
|
end
|
@@ -36,10 +49,9 @@ module ConceptQL
|
|
36
49
|
# TODO: Select the earliest and latest dates of observation from
|
37
50
|
# the proper CDM table to represent the start and end of data
|
38
51
|
def date_from(db, str)
|
39
|
-
return db.from(:observation_period).
|
40
|
-
return db.from(:observation_period).
|
41
|
-
return
|
42
|
-
return Sequel.lit('date ?', str)
|
52
|
+
return db.from(:observation_period).get { min(:observation_period_start_date) } if str.upcase == 'START'
|
53
|
+
return db.from(:observation_period).get { max(:observation_period_end_date) } if str.upcase == 'END'
|
54
|
+
return str
|
43
55
|
end
|
44
56
|
end
|
45
57
|
end
|
@@ -3,11 +3,13 @@ require_relative 'casting_operator'
|
|
3
3
|
module ConceptQL
|
4
4
|
module Operators
|
5
5
|
class Death < CastingOperator
|
6
|
+
register __FILE__
|
7
|
+
|
6
8
|
desc 'Generates all death records, or, if fed a stream, fetches all death records for the people represented in the incoming result set.'
|
7
|
-
|
9
|
+
domains :death
|
8
10
|
allows_one_upstream
|
9
11
|
|
10
|
-
def
|
12
|
+
def my_domain
|
11
13
|
:death
|
12
14
|
end
|
13
15
|
|
@@ -0,0 +1,42 @@
|
|
1
|
+
require_relative 'standard_vocabulary_operator'
|
2
|
+
|
3
|
+
module ConceptQL
|
4
|
+
module Operators
|
5
|
+
class Drg < StandardVocabularyOperator
|
6
|
+
register __FILE__
|
7
|
+
|
8
|
+
preferred_name "DRG"
|
9
|
+
argument :drgs, type: :codelist, vocab: 'DRG'
|
10
|
+
predominant_domains :procedure_occurrence
|
11
|
+
|
12
|
+
codes_should_match(/^\d{3}$/)
|
13
|
+
|
14
|
+
def query(db)
|
15
|
+
costs = super(db).select(:procedure_occurrence_id)
|
16
|
+
db[:procedure_occurrence].where(procedure_occurrence_id: costs)
|
17
|
+
end
|
18
|
+
|
19
|
+
def domain
|
20
|
+
:procedure_occurrence
|
21
|
+
end
|
22
|
+
|
23
|
+
def table
|
24
|
+
:procedure_cost
|
25
|
+
end
|
26
|
+
|
27
|
+
def vocabulary_id
|
28
|
+
40
|
29
|
+
end
|
30
|
+
|
31
|
+
def concept_column
|
32
|
+
:disease_class_concept_id
|
33
|
+
end
|
34
|
+
|
35
|
+
def code_column
|
36
|
+
:disease_class_source_value
|
37
|
+
end
|
38
|
+
end
|
39
|
+
end
|
40
|
+
end
|
41
|
+
|
42
|
+
|
@@ -1,12 +1,21 @@
|
|
1
1
|
require_relative 'operator'
|
2
|
+
require_relative '../behaviors/drugish'
|
2
3
|
|
3
4
|
module ConceptQL
|
4
5
|
module Operators
|
5
6
|
class DrugTypeConcept < Operator
|
6
|
-
|
7
|
+
register __FILE__
|
8
|
+
|
9
|
+
desc 'Returns all drug_exposures that match the given set of Drug Type concept IDs.'
|
7
10
|
argument :concept_ids, type: :codelist, vocab: 'RxNorm'
|
11
|
+
query_columns :drug_exposure
|
12
|
+
category "Select by Property"
|
13
|
+
basic_type :selection
|
14
|
+
validate_no_upstreams
|
15
|
+
validate_at_least_one_argument
|
16
|
+
include ConceptQL::Drugish
|
8
17
|
|
9
|
-
def
|
18
|
+
def domain
|
10
19
|
:drug_exposure
|
11
20
|
end
|
12
21
|
|
@@ -3,9 +3,11 @@ require_relative 'temporal_operator'
|
|
3
3
|
module ConceptQL
|
4
4
|
module Operators
|
5
5
|
class During < TemporalOperator
|
6
|
+
register __FILE__
|
7
|
+
|
6
8
|
desc <<-EOF
|
7
|
-
Compares all results on a person-by-person basis between the left hand results (LHR) and the right hand
|
8
|
-
|
9
|
+
Compares all results on a person-by-person basis between the left hand results (LHR) and the right hand results (RHR).
|
10
|
+
Any result in the LHR with a start_date and end_date that occur within the start_date and end_date of a result in the RHR is passed through.
|
9
11
|
All other results are discarded, including all results in the RHR.
|
10
12
|
EOF
|
11
13
|
|
@@ -3,7 +3,10 @@ require_relative 'temporal_operator'
|
|
3
3
|
module ConceptQL
|
4
4
|
module Operators
|
5
5
|
class Equal < TemporalOperator
|
6
|
-
|
6
|
+
register __FILE__
|
7
|
+
|
8
|
+
desc 'If a result in the left hand results (LHR) has the same value_as_number as a result in the right hand results (RHR), it is passed through.'
|
9
|
+
require_column :value_as_number
|
7
10
|
|
8
11
|
def where_clause
|
9
12
|
{ r__value_as_number: :l__value_as_number }
|
@@ -3,18 +3,30 @@ require_relative 'binary_operator_operator'
|
|
3
3
|
module ConceptQL
|
4
4
|
module Operators
|
5
5
|
class Except < BinaryOperatorOperator
|
6
|
-
|
7
|
-
|
6
|
+
register __FILE__
|
7
|
+
|
8
|
+
desc 'If a result in the left hand results (LHR) appears in the right hand results (RHR), it is removed from the output result set.'
|
9
|
+
default_query_columns
|
8
10
|
|
9
11
|
def query(db)
|
10
12
|
if ignore_dates?
|
11
13
|
query = db.from(Sequel.as(left.evaluate(db), :l))
|
12
|
-
.left_join(Sequel.as(right.evaluate(db), :r), l__criterion_id: :r__criterion_id,
|
14
|
+
.left_join(Sequel.as(right.evaluate(db), :r), l__criterion_id: :r__criterion_id, l__criterion_domain: :r__criterion_domain)
|
13
15
|
.where(r__criterion_id: nil)
|
14
16
|
.select_all(:l)
|
15
17
|
db.from(query)
|
16
18
|
else
|
17
|
-
left.evaluate(db)
|
19
|
+
lquery = left.evaluate(db)
|
20
|
+
rquery = right.evaluate(db)
|
21
|
+
|
22
|
+
# Set columns so that impala's EXCEPT emulation doesn't use a query to determine them
|
23
|
+
lquery.instance_variable_set(:@columns, query_cols)
|
24
|
+
rquery.instance_variable_set(:@columns, query_cols)
|
25
|
+
|
26
|
+
if impala?
|
27
|
+
lquery = lquery.except_strategy(:not_exists, :person_id, :criterion_id, :criterion_domain)
|
28
|
+
end
|
29
|
+
lquery.except(rquery)
|
18
30
|
end
|
19
31
|
end
|
20
32
|
|