conceptql 0.2.0 → 0.3.0

data/test/results/omopv4/except/count_complex

@@ -0,0 +1,5 @@
+{
+  "condition_occurrence": 42,
+  "procedure_occurrence": 1221,
+  "person": 22
+}

data/test/results/omopv4/except/crit_412_cpt

@@ -0,0 +1,54 @@
+{
+  "condition_occurrence": [
+    1712,
+    1829,
+    4359,
+    5751,
+    6083,
+    6902,
+    7865,
+    8397,
+    8618,
+    9882,
+    10196,
+    10443,
+    10865,
+    13016,
+    13741,
+    15149,
+    17041,
+    17772,
+    17774,
+    18412,
+    18555,
+    19736,
+    20005,
+    20037,
+    21006,
+    21619,
+    21627,
+    22875,
+    22933,
+    24437,
+    24471,
+    24707,
+    24721,
+    24989,
+    25309,
+    25417,
+    25875,
+    25888,
+    26766,
+    27388,
+    28177,
+    28188,
+    30831,
+    31387,
+    31542,
+    31792,
+    31877,
+    32104,
+    32463,
+    32981
+  ]
+}

data/test/results/omopv4/except/crit_412_inpatient

@@ -0,0 +1,46 @@
+{
+  "condition_occurrence": [
+    1712,
+    1829,
+    4359,
+    5751,
+    6902,
+    7865,
+    8397,
+    10196,
+    10443,
+    10865,
+    13016,
+    13741,
+    17041,
+    17772,
+    17774,
+    18555,
+    19736,
+    20037,
+    21006,
+    21619,
+    21627,
+    22875,
+    22933,
+    24437,
+    24471,
+    24707,
+    24721,
+    24989,
+    25309,
+    25417,
+    25875,
+    25888,
+    27388,
+    28177,
+    28188,
+    30831,
+    31387,
+    31542,
+    31792,
+    32104,
+    32463,
+    32981
+  ]
+}

data/test/results/omopv4/except/crit_complex

@@ -0,0 +1 @@
+{"person":[4,6,21,66,69,70,73,94,106,109,113,115,117,129,148,163,177,182,198,230,260,265],"procedure_occurrence":[48,95,118,134,144,167,176,291,350,357,360,372,376,401,402,424,476,577,588,589,594,598,609,652,664,681,714,751,758,830,831,847,1042,1058,1060,1102,1103,1119,1122,1130,1242,1246,1250,1312,1318,1336,1351,1352,1390,1401,1433,1459,1468,1481,1484,1526,1532,1549,1583,1589,1619,1743,1867,1872,1962,1970,1981,2000,2025,2033,2036,2057,2518,2564,2576,2585,2675,2694,2733,2747,2761,2772,2775,2780,2810,2860,2864,2870,2876,2911,3020,3027,3036,3040,3041,3051,3066,3074,3086,3092,3244,3277,3282,3289,3313,3314,3438,3439,3504,3507,3519,3545,3547,3549,3559,3595,3605,3659,3676,3681,3726,3767,3784,3849,3877,3917,3973,3978,3990,4069,4161,4196,4200,4247,4313,4323,4325,4327,4330,4347,4458,4468,4482,4517,4518,4524,4615,4650,4665,4683,4774,4775,4791,4802,4843,4846,4848,4883,4888,4890,4896,4923,4965,4984,4986,4998,5027,5035,5052,5076,5140,5191,5206,5222,5230,5245,5254,5257,5323,5392,5396,5517,5544,5545,5556,5560,5581,5582,5593,5662,5686,5691,5710,5772,5777,5799,5801,5804,5864,5866,5869,5871,5894,5925,5954,5955,5957,6009,6012,6061,6088,6097,6134,6158,6192,6229,6252,6265,6338,6450,6468,6471,6478,6524,6591,6616,6773,6776,6795,6813,6832,6873,6884,6894,7035,7052,7053,7056,7059,7064,7089,7120,7127,7133,7137,7157,7186,7307,7310,7323,7326,7329,7363,7448,7489,7514,7524,7542,7543,7547,7550,7554,7599,7613,7625,7669,7721,7740,7841,7853,7860,7893,7935,7951,8005,8007,8027,8036,8250,8289,8317,8329,8359,8391,8392,8404,8406,8483,8489,8509,8513,8534,8561,8571,8586,8610,8626,8642,8692,8703,8759,8801,8803,8830,8920,8950,8957,8974,8979,9036,9047,9050,9051,9056,9063,9085,9282,9283,9300,9303,9337,9355,9403,9413,9422,9465,9536,9543,9549,9559,9572,9613,9614,9615,9617,9652,9658,9659,9711,9723,9755,9782,9788,9799,9801,9851,9852,9856,9869,9891,9893,9898,9903,10327,10398,10400,10445,10475,10608,10643,10736,10744,10746,10752,10767,10787,10827,10844,10876,10877,10884,10890,10899,10914,10926,10942,10953,10967,11033,11042,11119,11167,11175,11202,11226,11276,11287,11302,11315,11350,11377,11390,11395,11418,11420,11454,11470,11613,11688,11691,11695,11698,11705,11723,11751,11818,11820,11839,11852,11854,11871,11936,11942,11953,11969,12032,12039,12102,12117,12123,12145,12193,12279,12314,12349,12356,12361,12382,12384,12408,12411,12418,12456,12485,12488,12519,12523,12528,12629,12725,12792,12794,12798,12813,12817,12840,12854,12861,12878,12926,12941,12943,12954,12961,12970,12987,12998,13022,13042,13047,13050,13058,13071,13086,13099,13133,13187,13190,13191,13194,13232,13276,13340,13389,13398,13445,13462,13477,13518,13525,13550,13580,13596,13615,13644,13649,13733,13744,13753,13757,13777,13786,13794,13799,13814,13815,13821,13845,13859,13861,13907,13930,13953,13957,14008,14038,14045,14104,14117,14130,14141,14145,14220,14232,14246,14263,14292,14293,14294,14339,14389,14416,14437,14703,14938,15029,15059,15062,15091,15165,15434,15459,15480,15489,15520,15598,15612,15613,15680,15690,15698,15808,15838,15890,15950,15967,15988,15994,16000,16012,16099,16202,16350,16377,16391,16393,16398,16410,16472,16494,16503,16506,16508,16530,16544,16566,16604,16609,16641,16704,16710,16732,16737,16757,16815,16829,16871,16877,16966,16998,17044,17117,17126,17127,17141,17165,17172,17181,17182,17183,17200,17210,17229,17249,17253,17254,17263,17288,17289,17403,17430,17453,17460,17479,17487,17519,17530,17572,17577,17661,17681,17686,17733,17738,17783,17825,17830,17851,17861,17955,17967,17969,18026,18027,18062,18068,18071,18088,18090,18105,18135,18156,18165,18171,18209,18226,18253,18259,18292,18305,18319,18415,18430,18467,18501,18517,18519,18550,18570,18592,18615,18658,18667,18694,18698,18750,18801,18810,18818,18847,18853,18867,18895,19026,19043,19044,19079,19115,19134,19153,19171,19172,19180,19195,19208,19235,19236,19301,19326,19380,19388,19397,19414,19450,19469,19472,19501,19507,19545,19548,19552,19568,19569,19634,19638,19648,19673,19693,19700,19702,19781,19795,19813,19829,19835,19951,19958,20013,20031,20202,20208,20232,20249,20270,20276,20285,20293,20306,20308,20332,20344,20359,20364,20377,20392,20401,20421,20428,20430,20435,20524,20538,20539,20542,20566,20619,20624,20625,20638,20658,20709,20711,20717,20743,20775,20795,20897,20913,20927,20945,20946,20949,20956,20972,20996,21012,21020,21023,21040,21070,21076,21102,21221,21232,21247,21266,21286,21308,21334,21356,21361,21397,21408,21462,21495,21497,21504,21578,21584,21613,21623,21629,21630,21648,21676,21694,21747,21796,21798,21884,21935,21936,21967,21989,22004,22028,22045,22056,22086,22105,22606,22613,22616,22643,22697,22701,22730,22734,22741,22768,22784,22795,22798,22799,22815,22863,22932,22995,23002,23083,23127,23154,23269,23285,23297,23327,23346,23353,23358,23363,23376,23380,23384,23418,23423,23551,23559,23579,23583,23593,23600,23644,23667,23748,23773,23808,23830,23876,23923,23937,23952,23975,23988,24058,24100,24119,24148,24156,24161,24167,24172,24179,24181,24229,24252,24271,24283,24285,24303,24369,24372,24382,24389,24395,24428,24437,24470,24602,24607,24610,24628,24645,24659,24671,24701,24718,24724,24726,24727,24737,24844,24862,24879,24884,24889,24904,24925,24954,24969,24970,24988,25031,25032,25055,25056,25099,25105,25126,25129,25169,25256,25257,25266,25288,25290,25298,25308,25314,25472,25500,25502,25556,25567,25606,25609,25628,25632,25692,25695,25737,25746,25760,26264,26486,26592,26650,26658,26806,26841,26858,26888,26892,26904,26938,27000,27001,27104,27153,27466,27474,27482,27498,27501,27504,27517,27670,27685,27714,27731,27737,27773,27832,27840,27871,27877,27886,27949,27969,27973,27982,28025,28043,28071,28116,28123,28135,28161,28183,28187,28218,28237,28259,28276,28298,28303,28326,28397,28413,28432,28509,28522,28544,28561,28564,28574,28584,28586,28598,28612,28660,28712,28805,28807,28814,28855,28863,28947,28974,28979,28980,28990,28999,29016,29057,29063,29064,29106,29168,29365,29382,29399,29431,29438,29445,29446,29458,29466,29474,29476,29497,29501,29520,29531,29593,29599,29604,29658,29760,29761,29768,29777,29799,29813,29821,29836,29858,29866,29899,29933,29948,29986,29994,30016,30022,30023,30025,30036,30042,30052,30082,30099,30110,30127,30140,30142,30146,30150,30192,30197,30211,30214,30282,30297,30315,30324,30340,30342,30348,30349,30373,30377,30384,30434,30452,30464,30528,31019,31079,31093,31100,31238,31319,31409,31421,31428,31452,31456,31479,31486,31487,31502,31517,31518,31583,31602,31619,31680,31761,31776,32016,32032,32065,32068,32083,32114,32124,32146,32213,32274,32282,32336,32343,32353,32354,32898,32956,32983,33003,33037,33038,33101,33118,33129,33194,33195,33312,33317,33320,33322,33329,33404,33406,33421,33423,33429,33434,33445,33451,33479,33485,33501,33503,33520,33534,33544,33571,33595,33602,33623,33628,33740,33765,33777,33783,33784,33810,33822,33833,33843,33857,33884,34058,34137,34148,34350,34516,34521,34525,34582,34612,34626,34646,34655,34664,34708,34712,34718,34725,34726,34736,34774,34828,34850,34891,34892,34941,34966,34999,35053,35096,35136,35154,35165,35237,35253,35255,35263,35302,35382,35389,35444,35473,35481,35528,35543,35556,35558,35591,35610,35615,35618],"condition_occurrence":[1712,1829,4359,5751,6902,7865,8397,10196,10443,10865,13016,13741,17041,17772,17774,18555,19736,20037,21006,21619,21627,22875,22933,24437,24471,24707,24721,24989,25309,25417,25875,25888,27388,28177,28188,30831,31387,31542,31792,32104,32463,32981]}

data/test/results/omopv4/filter/crit_1

@@ -0,0 +1,54 @@
+{
+  "condition_occurrence": [
+    1712,
+    1829,
+    4359,
+    5751,
+    6083,
+    6902,
+    7865,
+    8397,
+    8618,
+    9882,
+    10196,
+    10443,
+    10865,
+    13016,
+    13741,
+    15149,
+    17041,
+    17772,
+    17774,
+    18412,
+    18555,
+    19736,
+    20005,
+    20037,
+    21006,
+    21619,
+    21627,
+    22875,
+    22933,
+    24437,
+    24471,
+    24707,
+    24721,
+    24989,
+    25309,
+    25417,
+    25875,
+    25888,
+    26766,
+    27388,
+    28177,
+    28188,
+    30831,
+    31387,
+    31542,
+    31792,
+    31877,
+    32104,
+    32463,
+    32981
+  ]
+}

data/test/results/omopv4/first/anno_argument

@@ -0,0 +1,25 @@
+[
+  "first",
+  1,
+  {
+    "annotation": {
+      "counts": {
+        "invalid": {
+          "rows": 0,
+          "n": 0
+        }
+      },
+      "errors": [
+        [
+          "has no upstream"
+        ],
+        [
+          "has arguments",
+          [
+            1
+          ]
+        ]
+      ]
+    }
+  }
+]

data/test/results/omopv4/first/anno_no_upstream

@@ -0,0 +1,18 @@
+[
+  "first",
+  {
+    "annotation": {
+      "counts": {
+        "invalid": {
+          "rows": 0,
+          "n": 0
+        }
+      },
+      "errors": [
+        [
+          "has no upstream"
+        ]
+      ]
+    }
+  }
+]

data/test/results/omopv4/first/crit_cpt

@@ -0,0 +1,207 @@
+{
+  "procedure_occurrence": [
+    48,
+    118,
+    167,
+    376,
+    609,
+    652,
+    681,
+    758,
+    847,
+    1102,
+    1401,
+    1589,
+    1970,
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+    34892,
+    35053,
+    35136,
+    35237,
+    35481,
+    35558,
+    35591,
+    35618
+  ]
+}

data/test/results/omopv4/first/crit_icd9

@@ -0,0 +1,42 @@
+{
+  "condition_occurrence": [
+    1712,
+    4359,
+    5751,
+    6083,
+    6902,
+    7865,
+    8397,
+    8618,
+    9882,
+    10443,
+    10865,
+    13016,
+    13741,
+    15149,
+    17041,
+    17772,
+    18412,
+    18555,
+    19736,
+    20037,
+    21006,
+    21627,
+    22875,
+    22933,
+    24471,
+    24721,
+    24989,
+    25417,
+    25875,
+    26766,
+    27388,
+    28177,
+    30831,
+    31387,
+    31792,
+    32104,
+    32463,
+    32981
+  ]
+}