conceptql 0.2.0 → 0.3.0

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Files changed (1192) hide show
  1. checksums.yaml +4 -4
  2. data/.gitignore +2 -0
  3. data/CHANGELOG.md +32 -104
  4. data/Gemfile +2 -0
  5. data/README.md +43 -21
  6. data/Rakefile +34 -0
  7. data/conceptql.gemspec +3 -4
  8. data/config/provenance.yml +454 -0
  9. data/doc/converter.rb +33 -0
  10. data/doc/metadata.md +89 -0
  11. data/doc/spec.md +1775 -861
  12. data/doc/spec.md.cql +1930 -0
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  77. data/doc/spec/ff7d5b5573d09bd7c4cdd3aeda124d18bf82ec46673a62881b399a75d69f3f53.png +0 -0
  78. data/lib/conceptql.rb +21 -1
  79. data/lib/conceptql/annotate_grapher.rb +127 -0
  80. data/lib/conceptql/behaviors/drugish.rb +12 -0
  81. data/lib/conceptql/behaviors/labish.rb +13 -0
  82. data/lib/conceptql/behaviors/metadatable.rb +156 -71
  83. data/lib/conceptql/behaviors/provenanceable.rb +30 -0
  84. data/lib/conceptql/cli.rb +81 -37
  85. data/lib/conceptql/database.rb +42 -0
  86. data/lib/conceptql/date_adjuster.rb +22 -4
  87. data/lib/conceptql/fake_annotater.rb +129 -0
  88. data/lib/conceptql/knitter.rb +221 -0
  89. data/lib/conceptql/nodifier.rb +34 -23
  90. data/lib/conceptql/operators/after.rb +20 -3
  91. data/lib/conceptql/operators/any_overlap.rb +3 -1
  92. data/lib/conceptql/operators/before.rb +19 -3
  93. data/lib/conceptql/operators/binary_operator_operator.rb +24 -20
  94. data/lib/conceptql/operators/casting_operator.rb +39 -31
  95. data/lib/conceptql/operators/co_reported.rb +42 -0
  96. data/lib/conceptql/operators/complement.rb +21 -16
  97. data/lib/conceptql/operators/concurrent_within.rb +57 -0
  98. data/lib/conceptql/operators/condition_occurrence_source_vocabulary_operator.rb +34 -0
  99. data/lib/conceptql/operators/condition_occurrence_source_vocabulary_operator_union.rb +28 -0
  100. data/lib/conceptql/operators/condition_type.rb +12 -4
  101. data/lib/conceptql/operators/contains.rb +6 -2
  102. data/lib/conceptql/operators/count.rb +10 -2
  103. data/lib/conceptql/operators/cpt.rb +5 -2
  104. data/lib/conceptql/operators/cpt_or_hcpcs.rb +27 -0
  105. data/lib/conceptql/operators/date_range.rb +20 -8
  106. data/lib/conceptql/operators/death.rb +4 -2
  107. data/lib/conceptql/operators/drg.rb +42 -0
  108. data/lib/conceptql/operators/drug_type_concept.rb +11 -2
  109. data/lib/conceptql/operators/during.rb +4 -2
  110. data/lib/conceptql/operators/equal.rb +4 -1
  111. data/lib/conceptql/operators/except.rb +16 -4
  112. data/lib/conceptql/operators/filter.rb +6 -3
  113. data/lib/conceptql/operators/first.rb +3 -1
  114. data/lib/conceptql/operators/from.rb +32 -5
  115. data/lib/conceptql/operators/from_seer_visits.rb +11 -5
  116. data/lib/conceptql/operators/gender.rb +9 -2
  117. data/lib/conceptql/operators/hcpcs.rb +5 -2
  118. data/lib/conceptql/operators/icd10.rb +6 -15
  119. data/lib/conceptql/operators/icd10_pcs.rb +28 -0
  120. data/lib/conceptql/operators/icd9.rb +6 -15
  121. data/lib/conceptql/operators/icd9_procedure.rb +5 -2
  122. data/lib/conceptql/operators/intersect.rb +15 -10
  123. data/lib/conceptql/operators/invalid.rb +36 -0
  124. data/lib/conceptql/operators/last.rb +3 -1
  125. data/lib/conceptql/operators/loinc.rb +5 -2
  126. data/lib/conceptql/operators/medcode.rb +5 -16
  127. data/lib/conceptql/operators/medcode_procedure.rb +3 -2
  128. data/lib/conceptql/operators/ndc.rb +5 -2
  129. data/lib/conceptql/operators/numeric.rb +30 -11
  130. data/lib/conceptql/operators/observation_by_enttype.rb +5 -2
  131. data/lib/conceptql/operators/observation_period.rb +6 -4
  132. data/lib/conceptql/operators/occurrence.rb +47 -11
  133. data/lib/conceptql/operators/one_in_two_out.rb +96 -33
  134. data/lib/conceptql/operators/operator.rb +628 -95
  135. data/lib/conceptql/operators/overlapped_by.rb +8 -5
  136. data/lib/conceptql/operators/overlaps.rb +7 -5
  137. data/lib/conceptql/operators/pass_thru.rb +12 -2
  138. data/lib/conceptql/operators/person.rb +7 -5
  139. data/lib/conceptql/operators/person_filter.rb +5 -1
  140. data/lib/conceptql/operators/place_of_service_code.rb +12 -5
  141. data/lib/conceptql/operators/place_of_service_filter.rb +47 -0
  142. data/lib/conceptql/operators/procedure_occurrence.rb +4 -2
  143. data/lib/conceptql/operators/prodcode.rb +5 -2
  144. data/lib/conceptql/operators/provenance.rb +66 -0
  145. data/lib/conceptql/operators/provider_filter.rb +36 -0
  146. data/lib/conceptql/operators/race.rb +11 -4
  147. data/lib/conceptql/operators/read.rb +149 -0
  148. data/lib/conceptql/operators/recall.rb +42 -7
  149. data/lib/conceptql/operators/revenue_code.rb +40 -0
  150. data/lib/conceptql/operators/rxnorm.rb +5 -1
  151. data/lib/conceptql/operators/snomed.rb +3 -2
  152. data/lib/conceptql/operators/source_vocabulary_operator.rb +44 -14
  153. data/lib/conceptql/operators/standard_vocabulary_operator.rb +36 -15
  154. data/lib/conceptql/operators/started_by.rb +2 -1
  155. data/lib/conceptql/operators/sum.rb +7 -1
  156. data/lib/conceptql/operators/temporal_operator.rb +75 -9
  157. data/lib/conceptql/operators/time_window.rb +13 -23
  158. data/lib/conceptql/operators/to_seer_visits.rb +6 -1
  159. data/lib/conceptql/operators/trim_date_end.rb +20 -12
  160. data/lib/conceptql/operators/trim_date_start.rb +22 -12
  161. data/lib/conceptql/operators/union.rb +39 -2
  162. data/lib/conceptql/operators/visit_occurrence.rb +5 -3
  163. data/lib/conceptql/operators/vocabulary_operator.rb +45 -0
  164. data/lib/conceptql/query.rb +68 -22
  165. data/lib/conceptql/query_modifiers/drug_query_modifier.rb +45 -0
  166. data/lib/conceptql/query_modifiers/pos_query_modifier.rb +31 -0
  167. data/lib/conceptql/query_modifiers/query_modifier.rb +16 -0
  168. data/lib/conceptql/scope.rb +169 -31
  169. data/lib/conceptql/sql_formatter.rb +22 -0
  170. data/lib/conceptql/version.rb +1 -1
  171. data/test/all.rb +3 -0
  172. data/test/all_operations_test.rb +45 -0
  173. data/test/code_list_test.rb +23 -0
  174. data/test/data/omopv4/care_site.csv +0 -0
  175. data/test/data/omopv4/cohort.csv +0 -0
  176. data/test/data/omopv4/condition_era.csv +0 -0
  177. data/test/data/omopv4/condition_occurrence.csv +34044 -0
  178. data/test/data/omopv4/death.csv +1 -0
  179. data/test/data/omopv4/drug_cost.csv +0 -0
  180. data/test/data/omopv4/drug_era.csv +0 -0
  181. data/test/data/omopv4/drug_exposure.csv +2 -0
  182. data/test/data/omopv4/location.csv +0 -0
  183. data/test/data/omopv4/observation.csv +2 -0
  184. data/test/data/omopv4/observation_period.csv +1 -0
  185. data/test/data/omopv4/organization.csv +0 -0
  186. data/test/data/omopv4/payer_plan_period.csv +0 -0
  187. data/test/data/omopv4/person.csv +250 -0
  188. data/test/data/omopv4/procedure_cost.csv +0 -0
  189. data/test/data/omopv4/procedure_occurrence.csv +35099 -0
  190. data/test/data/omopv4/provider.csv +0 -0
  191. data/test/data/omopv4/visit_occurrence.csv +14931 -0
  192. data/test/data/omopv4_plus/care_site.csv +0 -0
  193. data/test/data/omopv4_plus/cohort.csv +0 -0
  194. data/test/data/omopv4_plus/concept.csv +352 -0
  195. data/test/data/omopv4_plus/condition_era.csv +0 -0
  196. data/test/data/omopv4_plus/condition_occurrence.csv +46673 -0
  197. data/test/data/omopv4_plus/death.csv +9 -0
  198. data/test/data/omopv4_plus/drug_cost.csv +13921 -0
  199. data/test/data/omopv4_plus/drug_era.csv +0 -0
  200. data/test/data/omopv4_plus/drug_exposure.csv +13921 -0
  201. data/test/data/omopv4_plus/headers/care_site.csv +1 -0
  202. data/test/data/omopv4_plus/headers/cohort.csv +1 -0
  203. data/test/data/omopv4_plus/headers/concept.csv +1 -0
  204. data/test/data/omopv4_plus/headers/condition_era.csv +1 -0
  205. data/test/data/omopv4_plus/headers/condition_occurrence.csv +1 -0
  206. data/test/data/omopv4_plus/headers/death.csv +1 -0
  207. data/test/data/omopv4_plus/headers/drug_cost.csv +1 -0
  208. data/test/data/omopv4_plus/headers/drug_era.csv +1 -0
  209. data/test/data/omopv4_plus/headers/drug_exposure.csv +1 -0
  210. data/test/data/omopv4_plus/headers/location.csv +1 -0
  211. data/test/data/omopv4_plus/headers/observation.csv +1 -0
  212. data/test/data/omopv4_plus/headers/observation_period.csv +1 -0
  213. data/test/data/omopv4_plus/headers/organization.csv +1 -0
  214. data/test/data/omopv4_plus/headers/payer_plan_period.csv +1 -0
  215. data/test/data/omopv4_plus/headers/person.csv +1 -0
  216. data/test/data/omopv4_plus/headers/procedure_cost.csv +1 -0
  217. data/test/data/omopv4_plus/headers/procedure_occurrence.csv +1 -0
  218. data/test/data/omopv4_plus/headers/provider.csv +1 -0
  219. data/test/data/omopv4_plus/headers/source_to_concept_map.csv +1 -0
  220. data/test/data/omopv4_plus/headers/visit_occurrence.csv +1 -0
  221. data/test/data/omopv4_plus/headers/vocabulary.csv +1 -0
  222. data/test/data/omopv4_plus/location.csv +0 -0
  223. data/test/data/omopv4_plus/observation.csv +0 -0
  224. data/test/data/omopv4_plus/observation_period.csv +147 -0
  225. data/test/data/omopv4_plus/organization.csv +736 -0
  226. data/test/data/omopv4_plus/payer_plan_period.csv +808 -0
  227. data/test/data/omopv4_plus/person.csv +250 -0
  228. data/test/data/omopv4_plus/procedure_cost.csv +20123 -0
  229. data/test/data/omopv4_plus/procedure_occurrence.csv +27273 -0
  230. data/test/data/omopv4_plus/provider.csv +10193 -0
  231. data/test/data/omopv4_plus/source_to_concept_map.csv +285 -0
  232. data/test/data/omopv4_plus/visit_occurrence.csv +45125 -0
  233. data/test/data/omopv4_plus/vocabulary.csv +60 -0
  234. data/test/db.rb +15 -0
  235. data/test/db_setup.rb +408 -0
  236. data/test/db_teardown.rb +33 -0
  237. data/test/fake_annotater_test.rb +31 -0
  238. data/test/helper.rb +129 -0
  239. data/test/knitter/conceptql.md.cql +39 -0
  240. data/test/knitter/conceptql.md.expect +43 -0
  241. data/test/knitter/empty.md.cql +0 -0
  242. data/test/knitter/except.md.cql +13 -0
  243. data/test/knitter/except.md.expect +14 -0
  244. data/test/knitter/fake.md.cql +10 -0
  245. data/test/knitter/fake.md.expect +13 -0
  246. data/test/knitter/many.md.cql +7 -0
  247. data/test/knitter/many.md.expect +14 -0
  248. data/test/knitter/no_conceptql.md.cql +36 -0
  249. data/test/knitter/title.md.cql +12 -0
  250. data/test/knitter/title.md.expect +15 -0
  251. data/test/knitter/union.md.cql +11 -0
  252. data/test/knitter/union.md.expect +14 -0
  253. data/test/knitter_test.rb +69 -0
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  1146. data/spec/conceptql/operators/concept_spec.rb +0 -40
  1147. data/spec/conceptql/operators/condition_type_spec.rb +0 -128
  1148. data/spec/conceptql/operators/contains_spec.rb +0 -19
  1149. data/spec/conceptql/operators/cpt_spec.rb +0 -29
  1150. data/spec/conceptql/operators/date_range_spec.rb +0 -33
  1151. data/spec/conceptql/operators/death_spec.rb +0 -10
  1152. data/spec/conceptql/operators/during_spec.rb +0 -30
  1153. data/spec/conceptql/operators/except_spec.rb +0 -15
  1154. data/spec/conceptql/operators/first_spec.rb +0 -35
  1155. data/spec/conceptql/operators/from_spec.rb +0 -13
  1156. data/spec/conceptql/operators/gender_spec.rb +0 -27
  1157. data/spec/conceptql/operators/hcpcs_spec.rb +0 -29
  1158. data/spec/conceptql/operators/icd10_spec.rb +0 -34
  1159. data/spec/conceptql/operators/icd9_procedure_spec.rb +0 -29
  1160. data/spec/conceptql/operators/icd9_spec.rb +0 -34
  1161. data/spec/conceptql/operators/intersect_spec.rb +0 -28
  1162. data/spec/conceptql/operators/last_spec.rb +0 -36
  1163. data/spec/conceptql/operators/loinc_spec.rb +0 -29
  1164. data/spec/conceptql/operators/medcode_procedure_spec.rb +0 -34
  1165. data/spec/conceptql/operators/medcode_spec.rb +0 -34
  1166. data/spec/conceptql/operators/observation_period_spec.rb +0 -10
  1167. data/spec/conceptql/operators/occurrence_spec.rb +0 -87
  1168. data/spec/conceptql/operators/overlapped_by_spec.rb +0 -32
  1169. data/spec/conceptql/operators/overlaps_spec.rb +0 -21
  1170. data/spec/conceptql/operators/person_filter_spec.rb +0 -15
  1171. data/spec/conceptql/operators/person_spec.rb +0 -10
  1172. data/spec/conceptql/operators/place_of_service_code_spec.rb +0 -24
  1173. data/spec/conceptql/operators/procedure_occurrence_spec.rb +0 -10
  1174. data/spec/conceptql/operators/prodcode_spec.rb +0 -35
  1175. data/spec/conceptql/operators/query_double.rb +0 -20
  1176. data/spec/conceptql/operators/query_double_spec.rb +0 -7
  1177. data/spec/conceptql/operators/race_spec.rb +0 -21
  1178. data/spec/conceptql/operators/rxnorm_spec.rb +0 -29
  1179. data/spec/conceptql/operators/snomed_spec.rb +0 -29
  1180. data/spec/conceptql/operators/source_vocabulary_operator_spec.rb +0 -35
  1181. data/spec/conceptql/operators/standard_vocabulary_operator_spec.rb +0 -35
  1182. data/spec/conceptql/operators/started_by_spec.rb +0 -22
  1183. data/spec/conceptql/operators/temporal_operator_spec.rb +0 -51
  1184. data/spec/conceptql/operators/time_window_spec.rb +0 -77
  1185. data/spec/conceptql/operators/union_spec.rb +0 -21
  1186. data/spec/conceptql/operators/visit_occurrence_spec.rb +0 -10
  1187. data/spec/conceptql/query_spec.rb +0 -22
  1188. data/spec/conceptql/tree_spec.rb +0 -50
  1189. data/spec/doubles/stream_for_casting_double.rb +0 -9
  1190. data/spec/doubles/stream_for_occurrence_double.rb +0 -25
  1191. data/spec/doubles/stream_for_temporal_double.rb +0 -6
  1192. data/spec/spec_helper.rb +0 -102
data/test/statements/complex/crit_3 ADDED
@@ -0,0 +1,54 @@
1
+ [
2
+ "intersect",
3
+ [
4
+ "place_of_service_code",
5
+ "21"
6
+ ],
7
+ [
8
+ "visit_occurrence",
9
+ [
10
+ "icd9",
11
+ "410.00",
12
+ "410.01"
13
+ ]
14
+ ],
15
+ [
16
+ "visit_occurrence",
17
+ [
18
+ "union",
19
+ [
20
+ "cpt",
21
+ "0008T",
22
+ "3142F",
23
+ "43205",
24
+ "43236",
25
+ "76975",
26
+ "91110",
27
+ "91111"
28
+ ],
29
+ [
30
+ "hcpcs",
31
+ "B4081",
32
+ "B4082"
33
+ ],
34
+ [
35
+ "icd9_procedure",
36
+ "42.22",
37
+ "42.23",
38
+ "44.13",
39
+ "45.13",
40
+ "52.21",
41
+ "97.01"
42
+ ],
43
+ [
44
+ "loinc",
45
+ "16125-7",
46
+ "17780-8",
47
+ "40820-3",
48
+ "50320-1",
49
+ "5177-1",
50
+ "7901-2"
51
+ ]
52
+ ]
53
+ ]
54
+ ]
data/test/statements/complex/crit_4 ADDED
@@ -0,0 +1,17 @@
1
+ [
2
+ "intersect",
3
+ [
4
+ "visit_occurrence",
5
+ [
6
+ "icd9",
7
+ "412"
8
+ ]
9
+ ],
10
+ [
11
+ "visit_occurrence",
12
+ [
13
+ "cpt",
14
+ "99251"
15
+ ]
16
+ ]
17
+ ]
data/test/statements/complex/crit_5 ADDED
@@ -0,0 +1,17 @@
1
+ [
2
+ "intersect",
3
+ [
4
+ "visit_occurrence",
5
+ [
6
+ "icd9",
7
+ "412"
8
+ ]
9
+ ],
10
+ [
11
+ "visit_occurrence",
12
+ [
13
+ "cpt",
14
+ "99214"
15
+ ]
16
+ ]
17
+ ]
data/test/statements/complex/crit_6 ADDED
@@ -0,0 +1,20 @@
1
+ [
2
+ "during",
3
+ {
4
+ "left": [
5
+ "cpt",
6
+ "99214"
7
+ ],
8
+ "right": [
9
+ "time_window",
10
+ [
11
+ "icd9",
12
+ "412"
13
+ ],
14
+ {
15
+ "start": "-30d",
16
+ "end": "30d"
17
+ }
18
+ ]
19
+ }
20
+ ]
data/test/statements/complex/crit_7 ADDED
@@ -0,0 +1,14 @@
1
+ [
2
+ "intersect",
3
+ [
4
+ "icd9",
5
+ "412"
6
+ ],
7
+ [
8
+ "complement",
9
+ [
10
+ "condition_type",
11
+ "inpatient_header"
12
+ ]
13
+ ]
14
+ ]
data/test/statements/complex/crit_out_of_order_ctes ADDED
@@ -0,0 +1,39 @@
1
+ [
2
+ "during",
3
+ {
4
+ "left": [
5
+ "one_in_two_out",
6
+ [
7
+ "icd9",
8
+ "428.0",
9
+ "428.9",
10
+ {
11
+ "label": "Unspecific HF Dx"
12
+ }
13
+ ]
14
+ ],
15
+ "right": [
16
+ "time_window",
17
+ [
18
+ "one_in_two_out",
19
+ [
20
+ "icd9",
21
+ "428.1",
22
+ "428.20",
23
+ "428.21",
24
+ "428.22",
25
+ "428.23",
26
+ "428.40",
27
+ "428.41",
28
+ "428.42",
29
+ "428.43"
30
+ ]
31
+ ],
32
+ {
33
+ "start": "-365d",
34
+ "end": "-1d",
35
+ "label": "Year look back period"
36
+ }
37
+ ]
38
+ }
39
+ ]
data/test/statements/complex/scanno_1 ADDED
@@ -0,0 +1,1508 @@
1
+ [
2
+ "during",
3
+ {
4
+ "left": [
5
+ "union",
6
+ [
7
+ "union",
8
+ [
9
+ "intersect",
10
+ [
11
+ "visit_occurrence",
12
+ [
13
+ "icd9",
14
+ "820.0",
15
+ "820.2",
16
+ "820.8",
17
+ "733.14"
18
+ ]
19
+ ],
20
+ [
21
+ "place_of_service_code",
22
+ "21"
23
+ ]
24
+ ],
25
+ [
26
+ "intersect",
27
+ [
28
+ "visit_occurrence",
29
+ [
30
+ "icd9",
31
+ "820.0",
32
+ "820.2",
33
+ "820.8",
34
+ "733.14"
35
+ ]
36
+ ],
37
+ [
38
+ "visit_occurrence",
39
+ [
40
+ "hcpcs",
41
+ "27230",
42
+ "27232",
43
+ "27235",
44
+ "27236",
45
+ "27238",
46
+ "27240",
47
+ "27244",
48
+ "27245",
49
+ "27246",
50
+ "27248"
51
+ ]
52
+ ],
53
+ [
54
+ "complement",
55
+ [
56
+ "place_of_service_code",
57
+ "21"
58
+ ]
59
+ ]
60
+ ],
61
+ {
62
+ "label": "Closed Hip"
63
+ }
64
+ ],
65
+ [
66
+ "union",
67
+ [
68
+ "intersect",
69
+ [
70
+ "visit_occurrence",
71
+ [
72
+ "icd9",
73
+ "820.1",
74
+ "820.3",
75
+ "820.9"
76
+ ]
77
+ ],
78
+ [
79
+ "place_of_service_code",
80
+ "21"
81
+ ]
82
+ ],
83
+ [
84
+ "intersect",
85
+ [
86
+ "visit_occurrence",
87
+ [
88
+ "icd9",
89
+ "820.1",
90
+ "820.3",
91
+ "820.9"
92
+ ]
93
+ ],
94
+ [
95
+ "visit_occurrence",
96
+ [
97
+ "hcpcs",
98
+ "27161",
99
+ "27170",
100
+ "27230",
101
+ "27232",
102
+ "27235",
103
+ "27236",
104
+ "27238",
105
+ "27240",
106
+ "27244",
107
+ "27245",
108
+ "27246",
109
+ "27248"
110
+ ]
111
+ ],
112
+ [
113
+ "complement",
114
+ [
115
+ "place_of_service_code",
116
+ "21"
117
+ ]
118
+ ]
119
+ ],
120
+ {
121
+ "label": "Open Hip"
122
+ }
123
+ ],
124
+ [
125
+ "union",
126
+ [
127
+ "intersect",
128
+ [
129
+ "visit_occurrence",
130
+ [
131
+ "icd9",
132
+ "808.0",
133
+ "808.2",
134
+ "808.4",
135
+ "808.8",
136
+ {
137
+ "label": "Closed Pelvis dx"
138
+ }
139
+ ]
140
+ ],
141
+ [
142
+ "place_of_service_code",
143
+ "21"
144
+ ]
145
+ ],
146
+ [
147
+ "intersect",
148
+ [
149
+ "visit_occurrence",
150
+ [
151
+ "hcpcs",
152
+ "27193",
153
+ "27194",
154
+ "27215",
155
+ "27216",
156
+ "27217",
157
+ "27218",
158
+ "27220",
159
+ "27222",
160
+ "27226",
161
+ "27227",
162
+ "27228"
163
+ ]
164
+ ],
165
+ [
166
+ "visit_occurrence",
167
+ [
168
+ "recall",
169
+ "Closed Pelvis dx"
170
+ ]
171
+ ],
172
+ [
173
+ "complement",
174
+ [
175
+ "place_of_service_code",
176
+ "21"
177
+ ]
178
+ ]
179
+ ],
180
+ {
181
+ "label": "Closed Pelvis"
182
+ }
183
+ ],
184
+ [
185
+ "union",
186
+ [
187
+ "intersect",
188
+ [
189
+ "complement",
190
+ [
191
+ "place_of_service_code",
192
+ "21"
193
+ ],
194
+ {
195
+ "label": "Outpatient Claims"
196
+ }
197
+ ],
198
+ [
199
+ "visit_occurrence",
200
+ [
201
+ "recall",
202
+ "Open Pelvis dx"
203
+ ]
204
+ ],
205
+ [
206
+ "visit_occurrence",
207
+ [
208
+ "hcpcs",
209
+ "27193",
210
+ "27194",
211
+ "27215",
212
+ "27216",
213
+ "27217",
214
+ "27218",
215
+ "27220",
216
+ "27222",
217
+ "27226",
218
+ "27227",
219
+ "27228"
220
+ ]
221
+ ]
222
+ ],
223
+ [
224
+ "intersect",
225
+ [
226
+ "visit_occurrence",
227
+ [
228
+ "icd9",
229
+ "808.1",
230
+ "808.3",
231
+ "808.5",
232
+ "808.9",
233
+ {
234
+ "label": "Open Pelvis dx"
235
+ }
236
+ ]
237
+ ],
238
+ [
239
+ "place_of_service_code",
240
+ "21"
241
+ ]
242
+ ],
243
+ {
244
+ "label": "Open Pelvis"
245
+ }
246
+ ],
247
+ [
248
+ "union",
249
+ [
250
+ "intersect",
251
+ [
252
+ "place_of_service_code",
253
+ "21"
254
+ ],
255
+ [
256
+ "visit_occurrence",
257
+ [
258
+ "icd9",
259
+ "821.0",
260
+ "821.2",
261
+ "733.15",
262
+ {
263
+ "label": "Closed Femur dx"
264
+ }
265
+ ]
266
+ ]
267
+ ],
268
+ [
269
+ "intersect",
270
+ [
271
+ "visit_occurrence",
272
+ [
273
+ "recall",
274
+ "Closed Femur dx"
275
+ ]
276
+ ],
277
+ [
278
+ "visit_occurrence",
279
+ [
280
+ "hcpcs",
281
+ "27500",
282
+ "27501",
283
+ "27502",
284
+ "27503",
285
+ "27506",
286
+ "27507",
287
+ "27508",
288
+ "27509",
289
+ "27510",
290
+ "27511",
291
+ "27513",
292
+ "27514"
293
+ ]
294
+ ],
295
+ [
296
+ "recall",
297
+ "Outpatient Claims"
298
+ ]
299
+ ],
300
+ {
301
+ "label": "Closed Femur"
302
+ }
303
+ ],
304
+ [
305
+ "union",
306
+ [
307
+ "intersect",
308
+ [
309
+ "place_of_service_code",
310
+ "21"
311
+ ],
312
+ [
313
+ "visit_occurrence",
314
+ [
315
+ "icd9",
316
+ "821.1",
317
+ "821.3",
318
+ {
319
+ "label": "Open Femur dx"
320
+ }
321
+ ]
322
+ ]
323
+ ],
324
+ [
325
+ "intersect",
326
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327
+ "visit_occurrence",
328
+ [
329
+ "recall",
330
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332
+ ],
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334
+ "visit_occurrence",
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336
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337
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338
+ "27501",
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+ "27502",
340
+ "27503",
341
+ "27506",
342
+ "27507",
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+ "27508",
344
+ "27509",
345
+ "27510",
346
+ "27511",
347
+ "27513",
348
+ "27514"
349
+ ]
350
+ ],
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+ [
352
+ "recall",
353
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354
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355
+ ],
356
+ {
357
+ "label": "Open Femur"
358
+ }
359
+ ],
360
+ [
361
+ "union",
362
+ [
363
+ "intersect",
364
+ [
365
+ "visit_occurrence",
366
+ [
367
+ "recall",
368
+ "Closed Tib Fib dx"
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370
+ ],
371
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372
+ "visit_occurrence",
373
+ [
374
+ "hcpcs",
375
+ "27530",
376
+ "27532",
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+ "27535",
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+ "27536",
379
+ "27750",
380
+ "27752",
381
+ "27756",
382
+ "27758",
383
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+ "27780",
385
+ "27781",
386
+ "27784",
387
+ "27824",
388
+ "27825",
389
+ "27826",
390
+ "27827",
391
+ "27828"
392
+ ]
393
+ ],
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+ [
395
+ "recall",
396
+ "Outpatient Claims"
397
+ ]
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+ ],
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+ [
400
+ "intersect",
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+ [
402
+ "visit_occurrence",
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+ [
404
+ "icd9",
405
+ "823.0",
406
+ "823.8",
407
+ "733.16",
408
+ {
409
+ "label": "Closed Tib Fib dx"
410
+ }
411
+ ]
412
+ ],
413
+ [
414
+ "place_of_service_code",
415
+ "21"
416
+ ]
417
+ ],
418
+ {
419
+ "label": "Closed Tib Fib"
420
+ }
421
+ ],
422
+ [
423
+ "union",
424
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425
+ "intersect",
426
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427
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435
+ "824.2",
436
+ "824.4",
437
+ "824.6",
438
+ "824.8",
439
+ {
440
+ "label": "Closed Ankle dx"
441
+ }
442
+ ]
443
+ ]
444
+ ],
445
+ [
446
+ "intersect",
447
+ [
448
+ "visit_occurrence",
449
+ [
450
+ "recall",
451
+ "Closed Ankle dx"
452
+ ]
453
+ ],
454
+ [
455
+ "visit_occurrence",
456
+ [
457
+ "hcpcs",
458
+ "27760",
459
+ "27762",
460
+ "27766",
461
+ "27786",
462
+ "27788",
463
+ "27792",
464
+ "27808",
465
+ "27810",
466
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467
+ "27816",
468
+ "27818",
469
+ "27822",
470
+ "27823",
471
+ "28430",
472
+ "28435",
473
+ "28436",
474
+ "28445"
475
+ ]
476
+ ],
477
+ [
478
+ "recall",
479
+ "Outpatient Claims"
480
+ ]
481
+ ],
482
+ {
483
+ "label": "Closed Ankle"
484
+ }
485
+ ],
486
+ [
487
+ "union",
488
+ [
489
+ "intersect",
490
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491
+ "visit_occurrence",
492
+ [
493
+ "icd9",
494
+ "813.4",
495
+ "733.12",
496
+ {
497
+ "label": "Closed Dis Rad Ul dx"
498
+ }
499
+ ]
500
+ ],
501
+ [
502
+ "place_of_service_code",
503
+ "21"
504
+ ]
505
+ ],
506
+ [
507
+ "intersect",
508
+ [
509
+ "visit_occurrence",
510
+ [
511
+ "recall",
512
+ "Closed Dis Rad Ul dx"
513
+ ]
514
+ ],
515
+ [
516
+ "visit_occurrence",
517
+ [
518
+ "hcpcs",
519
+ "25600",
520
+ "25605",
521
+ "25606",
522
+ "25607",
523
+ "25608",
524
+ "25609",
525
+ "25611",
526
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527
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528
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529
+ "25652",
530
+ "25606",
531
+ "25607",
532
+ "25608",
533
+ "25609"
534
+ ]
535
+ ],
536
+ [
537
+ "recall",
538
+ "Outpatient Claims"
539
+ ]
540
+ ],
541
+ {
542
+ "label": "Closed Dis Rad Ulna"
543
+ }
544
+ ],
545
+ [
546
+ "union",
547
+ [
548
+ "intersect",
549
+ [
550
+ "visit_occurrence",
551
+ [
552
+ "icd9",
553
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554
+ {
555
+ "label": "Open Dis Rad Ul dx"
556
+ }
557
+ ]
558
+ ],
559
+ [
560
+ "place_of_service_code",
561
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562
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563
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564
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565
+ "intersect",
566
+ [
567
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568
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569
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570
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1368
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1370
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1391
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1393
+ ],
1394
+ [
1395
+ "union",
1396
+ [
1397
+ "intersect",
1398
+ [
1399
+ "place_of_service_code",
1400
+ "21"
1401
+ ],
1402
+ [
1403
+ "visit_occurrence",
1404
+ [
1405
+ "icd9",
1406
+ "805.6",
1407
+ "806.6",
1408
+ {
1409
+ "label": "Closed Sac Cocc dx"
1410
+ }
1411
+ ]
1412
+ ]
1413
+ ],
1414
+ [
1415
+ "intersect",
1416
+ [
1417
+ "recall",
1418
+ "Outpatient Claims"
1419
+ ],
1420
+ [
1421
+ "visit_occurrence",
1422
+ [
1423
+ "recall",
1424
+ "Closed Sac Cocc dx"
1425
+ ]
1426
+ ],
1427
+ [
1428
+ "visit_occurrence",
1429
+ [
1430
+ "hcpcs",
1431
+ "72220"
1432
+ ]
1433
+ ]
1434
+ ],
1435
+ {
1436
+ "label": "Closed Sacrum Coccyx"
1437
+ }
1438
+ ],
1439
+ [
1440
+ "union",
1441
+ [
1442
+ "intersect",
1443
+ [
1444
+ "place_of_service_code",
1445
+ "21"
1446
+ ],
1447
+ [
1448
+ "visit_occurrence",
1449
+ [
1450
+ "icd9",
1451
+ "805.7",
1452
+ "806.7",
1453
+ {
1454
+ "label": "Open Sac Cocc dx"
1455
+ }
1456
+ ]
1457
+ ]
1458
+ ],
1459
+ [
1460
+ "intersect",
1461
+ [
1462
+ "visit_occurrence",
1463
+ [
1464
+ "recall",
1465
+ "Open Sac Cocc dx"
1466
+ ]
1467
+ ],
1468
+ [
1469
+ "recall",
1470
+ "Outpatient Claims"
1471
+ ],
1472
+ [
1473
+ "visit_occurrence",
1474
+ [
1475
+ "hcpcs",
1476
+ "72220"
1477
+ ]
1478
+ ]
1479
+ ],
1480
+ {
1481
+ "label": "Open Sacrum Coccyx"
1482
+ }
1483
+ ],
1484
+ {
1485
+ "label": "Fractures"
1486
+ }
1487
+ ],
1488
+ "right": [
1489
+ "time_window",
1490
+ [
1491
+ "intersect",
1492
+ [
1493
+ "gender",
1494
+ "Male"
1495
+ ],
1496
+ [
1497
+ "race",
1498
+ "Black or African American"
1499
+ ]
1500
+ ],
1501
+ {
1502
+ "start": "65y",
1503
+ "end": "80y-1d",
1504
+ "label": "65-79 Years Old"
1505
+ }
1506
+ ]
1507
+ }
1508
+ ]