complearn 0.6.2

data/bin/ncd

@@ -0,0 +1,43 @@
+#!/usr/bin/ruby1.8
+
+require 'optparse'
+
+require 'CompLearnLib/Ncd.rb'
+
+setup = Hash.new('')
+
+helptext = nil
+
+ARGV.options { |opt|
+
+  opt.banner = "Usage: ncd [options] file1 file2"
+  opt.on("Options:\n")
+  opt.on("--configfile filename", "-f", String, 
+    "Read alternate configuration file") { |setup['cfgfile']| }
+  opt.on("--writeconfig filename", "-w", String, "Write a default configuration file") { |fn|
+    CLConfig.writeDefaultConfigFile(fn); exit 0 }
+  opt.on("--help", "-h", "Print this help text and exit") { puts opt; exit 0 }
+  opt.on("--version", "-v", "Print version and exit") { CLConfig.printVersionAndExit() }
+
+  helptext = opt.to_s
+
+  opt.parse!
+
+}
+
+CLConfig.setDefaultConfig(CLConfig.new(setup['cfgfile'])) if setup.has_key?('cfgfile')
+cfg = CLConfig.getDefaultConfig
+
+if ARGV.size != 2
+  STDERR.puts(helptext)
+  exit(1)
+end
+
+file1, file2 = ARGV
+
+file1 = cfg.findInputFile(file1)
+file2 = cfg.findInputFile(file2)
+
+puts Ncd.new().ncdFile(file1, file2)
+
+exit(0)

data/bin/ncd.in

@@ -0,0 +1,43 @@
+#!@RUBYBIN@
+
+require 'optparse'
+
+require 'CompLearnLib/Ncd.rb'
+
+setup = Hash.new('')
+
+helptext = nil
+
+ARGV.options { |opt|
+
+  opt.banner = "Usage: ncd [options] file1 file2"
+  opt.on("Options:\n")
+  opt.on("--configfile filename", "-f", String, 
+    "Read alternate configuration file") { |setup['cfgfile']| }
+  opt.on("--writeconfig filename", "-w", String, "Write a default configuration file") { |fn|
+    CLConfig.writeDefaultConfigFile(fn); exit 0 }
+  opt.on("--help", "-h", "Print this help text and exit") { puts opt; exit 0 }
+  opt.on("--version", "-v", "Print version and exit") { CLConfig.printVersionAndExit() }
+
+  helptext = opt.to_s
+
+  opt.parse!
+
+}
+
+CLConfig.setDefaultConfig(CLConfig.new(setup['cfgfile'])) if setup.has_key?('cfgfile')
+cfg = CLConfig.getDefaultConfig
+
+if ARGV.size != 2
+  STDERR.puts(helptext)
+  exit(1)
+end
+
+file1, file2 = ARGV
+
+file1 = cfg.findInputFile(file1)
+file2 = cfg.findInputFile(file2)
+
+puts Ncd.new().ncdFile(file1, file2)
+
+exit(0)

data/bin/ncdmatrix

@@ -0,0 +1,54 @@
+#!/usr/bin/ruby1.8
+
+require 'optparse'
+
+require 'CompLearnLib/Ncd.rb'
+require 'CompLearnLib/CLConfig.rb'
+require 'CompLearnLib/DistMatrix'
+require 'CompLearnLib/TaskMaster'
+
+setup = Hash.new('')
+
+TaskMaster.init()
+
+ARGV.options { |opt|
+
+  opt.banner = "Usage: ncdmatrix [options] {dirname|filelist.txt}"
+  opt.on("")
+  opt.on("Computes a square distance matrix for a set of files")
+  opt.on("If a directory is specified, all files in that directory are used")
+  opt.on("If a file is specified, it must contain filenames one per line")
+  opt.on("If relative filenames are used, inputDir and cwd will be searched\n")
+  opt.on("Options:\n")
+  opt.on("--configfile filename", "-f", String, 
+    "Read alternate configuration file") { |setup['cfgfile']| }
+  opt.on("--help", "-h", "Print this help text and exit") { puts opt; exit 0 }
+  opt.on("--version", "-v", "Print version and exit") { CLConfig.printVersionAndExit() }
+  
+  opt.parse!
+
+  if ARGV.size < 1
+    puts opt
+    exit(1)
+  end
+}
+
+begin
+
+CLConfig.setDefaultConfig(CLConfig.new(setup['cfgfile'])) if setup.has_key?('cfgfile')
+cfg = CLConfig.getDefaultConfig
+
+objname = ARGV[0]
+
+files = cfg.getFilelistFromDirOrFile(objname)
+
+distmatrix = Ncd.new().ncdMatrixFile(files)
+
+puts DistMatrix.convertToString(distmatrix)
+
+rescue
+  puts "Exception: #{$!}"
+end
+
+exit(0)
+

data/bin/ncdmatrix.in

@@ -0,0 +1,54 @@
+#!@RUBYBIN@
+
+require 'optparse'
+
+require 'CompLearnLib/Ncd.rb'
+require 'CompLearnLib/CLConfig.rb'
+require 'CompLearnLib/DistMatrix'
+require 'CompLearnLib/TaskMaster'
+
+setup = Hash.new('')
+
+TaskMaster.init()
+
+ARGV.options { |opt|
+
+  opt.banner = "Usage: ncdmatrix [options] {dirname|filelist.txt}"
+  opt.on("")
+  opt.on("Computes a square distance matrix for a set of files")
+  opt.on("If a directory is specified, all files in that directory are used")
+  opt.on("If a file is specified, it must contain filenames one per line")
+  opt.on("If relative filenames are used, inputDir and cwd will be searched\n")
+  opt.on("Options:\n")
+  opt.on("--configfile filename", "-f", String, 
+    "Read alternate configuration file") { |setup['cfgfile']| }
+  opt.on("--help", "-h", "Print this help text and exit") { puts opt; exit 0 }
+  opt.on("--version", "-v", "Print version and exit") { CLConfig.printVersionAndExit() }
+  
+  opt.parse!
+
+  if ARGV.size < 1
+    puts opt
+    exit(1)
+  end
+}
+
+begin
+
+CLConfig.setDefaultConfig(CLConfig.new(setup['cfgfile'])) if setup.has_key?('cfgfile')
+cfg = CLConfig.getDefaultConfig
+
+objname = ARGV[0]
+
+files = cfg.getFilelistFromDirOrFile(objname)
+
+distmatrix = Ncd.new().ncdMatrixFile(files)
+
+puts DistMatrix.convertToString(distmatrix)
+
+rescue
+  puts "Exception: #{$!}"
+end
+
+exit(0)
+

data/bin/ncdvector

@@ -0,0 +1,50 @@
+#!/usr/bin/ruby1.8
+
+require 'optparse'
+
+require 'CompLearnLib/Ncd.rb'
+
+setup = Hash.new('')
+
+TaskMaster.init()
+
+ARGV.options { |opt|
+
+  opt.banner = "Usage: ncdvector [options] file { filelist.txt | dirname }"
+  opt.on("")
+  opt.on("Computes a feature vector from a file and a feature listing or directory")
+  opt.on("filelist.txt must be a list of filenames, one per line")
+  opt.on("If relative filenames are used, inputDir and cwd will be searched\n")
+  opt.on("Alternatively, a directory dirname may be specified and then all\n")
+  opt.on("files in that directory will be used.")
+  opt.on("Options:\n")
+  opt.on("--configfile filename", "-f", String, 
+    "Read alternate configuration file") { |setup['cfgfile']| }
+  opt.on("--help", "-h", "Print this help text and exit") { puts opt; exit 0 }
+  opt.on("--version", "-v", "Print version and exit") { CLConfig.printVersionAndExit() }
+  
+  opt.parse!
+
+  if ARGV.size < 2
+    puts opt
+    exit(1)
+  end
+}
+
+begin
+
+CLConfig.setDefaultConfig(CLConfig.new(setup['cfgfile'])) if setup.has_key?('cfgfile')
+cfg = CLConfig.getDefaultConfig
+
+file1, filelist = ARGV
+file1 = cfg.findInputFile(file1)
+
+abslist = cfg.getFilelistFromDirOrFile(filelist)
+
+  puts Ncd.new().ncdVectorFile(file1, abslist).join(' ')
+rescue
+  puts "Exception: #{$!}"
+end
+
+exit(0)
+

data/bin/ncdvector.in

@@ -0,0 +1,50 @@
+#!@RUBYBIN@
+
+require 'optparse'
+
+require 'CompLearnLib/Ncd.rb'
+
+setup = Hash.new('')
+
+TaskMaster.init()
+
+ARGV.options { |opt|
+
+  opt.banner = "Usage: ncdvector [options] file { filelist.txt | dirname }"
+  opt.on("")
+  opt.on("Computes a feature vector from a file and a feature listing or directory")
+  opt.on("filelist.txt must be a list of filenames, one per line")
+  opt.on("If relative filenames are used, inputDir and cwd will be searched\n")
+  opt.on("Alternatively, a directory dirname may be specified and then all\n")
+  opt.on("files in that directory will be used.")
+  opt.on("Options:\n")
+  opt.on("--configfile filename", "-f", String, 
+    "Read alternate configuration file") { |setup['cfgfile']| }
+  opt.on("--help", "-h", "Print this help text and exit") { puts opt; exit 0 }
+  opt.on("--version", "-v", "Print version and exit") { CLConfig.printVersionAndExit() }
+  
+  opt.parse!
+
+  if ARGV.size < 2
+    puts opt
+    exit(1)
+  end
+}
+
+begin
+
+CLConfig.setDefaultConfig(CLConfig.new(setup['cfgfile'])) if setup.has_key?('cfgfile')
+cfg = CLConfig.getDefaultConfig
+
+file1, filelist = ARGV
+file1 = cfg.findInputFile(file1)
+
+abslist = cfg.getFilelistFromDirOrFile(filelist)
+
+  puts Ncd.new().ncdVectorFile(file1, abslist).join(' ')
+rescue
+  puts "Exception: #{$!}"
+end
+
+exit(0)
+

data/complearn.gemspec

@@ -0,0 +1,57 @@
+require 'rubygems'
+
+  spec = Gem::Specification.new do |s|
+
+    #### Basic information.
+
+    s.name = 'complearn'
+    s.version = "0.6.2"
+    s.summary = <<-EOF
+The CompLearn Toolkit enables you to do data mining using data compression.
+It also allows you to do Quartet Tree Reconstruction as well as
+Support Vector Machine experiments with these techniques.  
+EOF
+s.description = <<-EOF
+Using this package, you can do powerful pattern recognition easily from your
+shell command line using a simple suite of tools.  Applications include
+music cateogrization, text classification, handwritten digit recognition,
+and evolutionary tree reconstruction.  The technique is based on a
+very general theoretical notion of Kolmogorov Complexity, and so is
+undoubtedly applicable to many as yet unknown disciplines.  See
+the webpage for research papers explaining the math behind these techniques.
+EOF
+
+    #### Dependencies and requirements.
+
+    s.requirements << "Data compressors such as bzip, gzip, or ppmz"
+
+    #### Which files are to be included in this gem?  Everything!  (Except CVS directories.)
+
+    s.files = Dir.glob("**/*").delete_if { |item| item.include?("CVS") }
+
+    #### C code extensions.
+
+    s.extensions << "ext/extconf.rb"
+
+    #### Load-time details: library and application (you will need one or both).
+
+#    s.require_path = 'lib'                         # Use these for libraries.
+#    s.autorequire = 'rmagic'
+
+    s.bindir = "bin"                               # Use these for applications.
+    s.executables = ["ncd", "ncdvector", "ncdmatrix", "maketree", "makesvm", "labeltree"]
+    s.default_executable = "ncd"
+
+    #### Documentation and testing.
+
+    s.has_rdoc = true
+#    s.test_suite_file = "test/rmagic-tests.rb"
+
+    #### Author and project details.
+
+    s.author = "Rudi Cilibrasi"
+    s.email = "cilibrar@ofb.net"
+    s.homepage = "http://complearn.sourceforge.net/"
+    s.rubyforge_project = "complearn"
+  end
+

data/config.log

@@ -0,0 +1,597 @@
+This file contains any messages produced by compilers while
+running configure, to aid debugging if configure makes a mistake.
+
+It was created by configure, which was
+generated by GNU Autoconf 2.59.  Invocation command line was
+
+  $ ./configure 
+
+## --------- ##
+## Platform. ##
+## --------- ##
+
+hostname = wax.rhouse.local
+uname -m = i686
+uname -r = 2.6.0-test7-1-386
+uname -s = Linux
+uname -v = #1 Sun Oct 12 10:29:56 EST 2003
+
+/usr/bin/uname -p = unknown
+/bin/uname -X     = unknown
+
+/bin/arch              = i686
+/usr/bin/arch -k       = unknown
+/usr/convex/getsysinfo = unknown
+hostinfo               = unknown
+/bin/machine           = unknown
+/usr/bin/oslevel       = unknown
+/bin/universe          = unknown
+
+PATH: /home/cilibrar/bin
+PATH: /bin
+PATH: /usr/bin
+PATH: /usr/sbin
+PATH: /sbin
+PATH: /usr/local/bin
+PATH: /usr/games
+PATH: /usr/X11R6/bin
+
+
+## ----------- ##
+## Core tests. ##
+## ----------- ##
+
+configure:1340: checking for a BSD-compatible install
+configure:1395: result: /usr/bin/install -c
+configure:1406: checking whether build environment is sane
+configure:1449: result: yes
+configure:1464: checking whether make sets $(MAKE)
+configure:1484: result: yes
+configure:1516: checking for working aclocal
+configure:1523: result: found
+configure:1531: checking for working autoconf
+configure:1538: result: found
+configure:1546: checking for working automake
+configure:1553: result: found
+configure:1561: checking for working autoheader
+configure:1568: result: found
+configure:1576: checking for working makeinfo
+configure:1583: result: found
+configure:1649: checking for ranlib
+configure:1665: found /usr/bin/ranlib
+configure:1676: result: ranlib
+configure:1739: checking for gcc
+configure:1755: found /usr/bin/gcc
+configure:1765: result: gcc
+configure:2009: checking for C compiler version
+configure:2012: gcc --version </dev/null >&5
+2.95.4
+configure:2015: $? = 0
+configure:2017: gcc -v </dev/null >&5
+Reading specs from /usr/lib/gcc-lib/i386-linux/2.95.4/specs
+gcc version 2.95.4 20011002 (Debian prerelease)
+configure:2020: $? = 0
+configure:2022: gcc -V </dev/null >&5
+gcc: argument to `-V' is missing
+configure:2025: $? = 1
+configure:2048: checking for C compiler default output file name
+configure:2051: gcc    conftest.c  >&5
+configure:2054: $? = 0
+configure:2100: result: a.out
+configure:2105: checking whether the C compiler works
+configure:2111: ./a.out
+configure:2114: $? = 0
+configure:2131: result: yes
+configure:2138: checking whether we are cross compiling
+configure:2140: result: no
+configure:2143: checking for suffix of executables
+configure:2145: gcc -o conftest    conftest.c  >&5
+configure:2148: $? = 0
+configure:2173: result: 
+configure:2179: checking for suffix of object files
+configure:2200: gcc -c   conftest.c >&5
+configure:2203: $? = 0
+configure:2225: result: o
+configure:2229: checking whether we are using the GNU C compiler
+configure:2253: gcc -c   conftest.c >&5
+configure:2259: $? = 0
+configure:2262: test -z 			 || test ! -s conftest.err
+configure:2265: $? = 0
+configure:2268: test -s conftest.o
+configure:2271: $? = 0
+configure:2284: result: yes
+configure:2290: checking whether gcc accepts -g
+configure:2311: gcc -c -g  conftest.c >&5
+configure:2317: $? = 0
+configure:2320: test -z 			 || test ! -s conftest.err
+configure:2323: $? = 0
+configure:2326: test -s conftest.o
+configure:2329: $? = 0
+configure:2340: result: yes
+configure:2357: checking for gcc option to accept ANSI C
+configure:2427: gcc  -c -g -O2  conftest.c >&5
+configure:2433: $? = 0
+configure:2436: test -z 			 || test ! -s conftest.err
+configure:2439: $? = 0
+configure:2442: test -s conftest.o
+configure:2445: $? = 0
+configure:2463: result: none needed
+configure:2481: gcc -c -g -O2  conftest.c >&5
+conftest.c:2: parse error before `me'
+configure:2487: $? = 1
+configure: failed program was:
+| #ifndef __cplusplus
+|   choke me
+| #endif
+configure:2624: checking for ruby1.8
+configure:2642: found /usr/bin/ruby1.8
+configure:2654: result: /usr/bin/ruby1.8
+configure:2666: checking for Ruby bz2 (bzip2) library
+configure:2677: checking for Ruby zlib (gzip) library
+configure:2701: checking how to run the C preprocessor
+configure:2736: gcc -E  conftest.c
+configure:2742: $? = 0
+configure:2774: gcc -E  conftest.c
+conftest.c:11: ac_nonexistent.h: No such file or directory
+configure:2780: $? = 1
+configure: failed program was:
+| /* confdefs.h.  */
+| 
+| #define PACKAGE_NAME ""
+| #define PACKAGE_TARNAME ""
+| #define PACKAGE_VERSION ""
+| #define PACKAGE_STRING ""
+| #define PACKAGE_BUGREPORT ""
+| #define PACKAGE "complearn"
+| #define VERSION "0.6.2"
+| /* end confdefs.h.  */
+| #include <ac_nonexistent.h>
+configure:2819: result: gcc -E
+configure:2843: gcc -E  conftest.c
+configure:2849: $? = 0
+configure:2881: gcc -E  conftest.c
+conftest.c:11: ac_nonexistent.h: No such file or directory
+configure:2887: $? = 1
+configure: failed program was:
+| /* confdefs.h.  */
+| 
+| #define PACKAGE_NAME ""
+| #define PACKAGE_TARNAME ""
+| #define PACKAGE_VERSION ""
+| #define PACKAGE_STRING ""
+| #define PACKAGE_BUGREPORT ""
+| #define PACKAGE "complearn"
+| #define VERSION "0.6.2"
+| /* end confdefs.h.  */
+| #include <ac_nonexistent.h>
+configure:2931: checking for egrep
+configure:2941: result: grep -E
+configure:2946: checking for ANSI C header files
+configure:2971: gcc -c -g -O2  conftest.c >&5
+configure:2977: $? = 0
+configure:2980: test -z 			 || test ! -s conftest.err
+configure:2983: $? = 0
+configure:2986: test -s conftest.o
+configure:2989: $? = 0
+configure:3075: gcc -o conftest -g -O2   conftest.c  >&5
+configure:3078: $? = 0
+configure:3080: ./conftest
+configure:3083: $? = 0
+configure:3098: result: yes
+configure:3122: checking for sys/types.h
+configure:3138: gcc -c -g -O2  conftest.c >&5
+configure:3144: $? = 0
+configure:3147: test -z 			 || test ! -s conftest.err
+configure:3150: $? = 0
+configure:3153: test -s conftest.o
+configure:3156: $? = 0
+configure:3167: result: yes
+configure:3122: checking for sys/stat.h
+configure:3138: gcc -c -g -O2  conftest.c >&5
+configure:3144: $? = 0
+configure:3147: test -z 			 || test ! -s conftest.err
+configure:3150: $? = 0
+configure:3153: test -s conftest.o
+configure:3156: $? = 0
+configure:3167: result: yes
+configure:3122: checking for stdlib.h
+configure:3138: gcc -c -g -O2  conftest.c >&5
+configure:3144: $? = 0
+configure:3147: test -z 			 || test ! -s conftest.err
+configure:3150: $? = 0
+configure:3153: test -s conftest.o
+configure:3156: $? = 0
+configure:3167: result: yes
+configure:3122: checking for string.h
+configure:3138: gcc -c -g -O2  conftest.c >&5
+configure:3144: $? = 0
+configure:3147: test -z 			 || test ! -s conftest.err
+configure:3150: $? = 0
+configure:3153: test -s conftest.o
+configure:3156: $? = 0
+configure:3167: result: yes
+configure:3122: checking for memory.h
+configure:3138: gcc -c -g -O2  conftest.c >&5
+configure:3144: $? = 0
+configure:3147: test -z 			 || test ! -s conftest.err
+configure:3150: $? = 0
+configure:3153: test -s conftest.o
+configure:3156: $? = 0
+configure:3167: result: yes
+configure:3122: checking for strings.h
+configure:3138: gcc -c -g -O2  conftest.c >&5
+configure:3144: $? = 0
+configure:3147: test -z 			 || test ! -s conftest.err
+configure:3150: $? = 0
+configure:3153: test -s conftest.o
+configure:3156: $? = 0
+configure:3167: result: yes
+configure:3122: checking for inttypes.h
+configure:3138: gcc -c -g -O2  conftest.c >&5
+configure:3144: $? = 0
+configure:3147: test -z 			 || test ! -s conftest.err
+configure:3150: $? = 0
+configure:3153: test -s conftest.o
+configure:3156: $? = 0
+configure:3167: result: yes
+configure:3122: checking for stdint.h
+configure:3138: gcc -c -g -O2  conftest.c >&5
+configure:3144: $? = 0
+configure:3147: test -z 			 || test ! -s conftest.err
+configure:3150: $? = 0
+configure:3153: test -s conftest.o
+configure:3156: $? = 0
+configure:3167: result: yes
+configure:3122: checking for unistd.h
+configure:3138: gcc -c -g -O2  conftest.c >&5
+configure:3144: $? = 0
+configure:3147: test -z 			 || test ! -s conftest.err
+configure:3150: $? = 0
+configure:3153: test -s conftest.o
+configure:3156: $? = 0
+configure:3167: result: yes
+configure:3186: checking for stdlib.h
+configure:3191: result: yes
+configure:3195: checking sys/time.h usability
+configure:3207: gcc -c -g -O2  conftest.c >&5
+configure:3213: $? = 0
+configure:3216: test -z 			 || test ! -s conftest.err
+configure:3219: $? = 0
+configure:3222: test -s conftest.o
+configure:3225: $? = 0
+configure:3235: result: yes
+configure:3239: checking sys/time.h presence
+configure:3249: gcc -E  conftest.c
+configure:3255: $? = 0
+configure:3275: result: yes
+configure:3310: checking for sys/time.h
+configure:3317: result: yes
+configure:3186: checking for unistd.h
+configure:3191: result: yes
+configure:3332: checking for stdbool.h that conforms to C99
+configure:3385: gcc -c -g -O2  conftest.c >&5
+conftest.c:27: #error bool is not defined
+conftest.c:39: #error true is not 1
+configure:3391: $? = 1
+configure: failed program was:
+| /* confdefs.h.  */
+| 
+| #define PACKAGE_NAME ""
+| #define PACKAGE_TARNAME ""
+| #define PACKAGE_VERSION ""
+| #define PACKAGE_STRING ""
+| #define PACKAGE_BUGREPORT ""
+| #define PACKAGE "complearn"
+| #define VERSION "0.6.2"
+| #define STDC_HEADERS 1
+| #define HAVE_SYS_TYPES_H 1
+| #define HAVE_SYS_STAT_H 1
+| #define HAVE_STDLIB_H 1
+| #define HAVE_STRING_H 1
+| #define HAVE_MEMORY_H 1
+| #define HAVE_STRINGS_H 1
+| #define HAVE_INTTYPES_H 1
+| #define HAVE_STDINT_H 1
+| #define HAVE_UNISTD_H 1
+| #define HAVE_STDLIB_H 1
+| #define HAVE_SYS_TIME_H 1
+| #define HAVE_UNISTD_H 1
+| /* end confdefs.h.  */
+| 
+| #include <stdbool.h>
+| #ifndef bool
+| # error bool is not defined
+| #endif
+| #ifndef false
+| # error false is not defined
+| #endif
+| #if false
+| # error false is not 0
+| #endif
+| #ifndef true
+| # error true is not defined
+| #endif
+| #if true != 1
+| # error true is not 1
+| #endif
+| #ifndef __bool_true_false_are_defined
+| # error __bool_true_false_are_defined is not defined
+| #endif
+| 
+| 	struct s { _Bool s: 1; _Bool t; } s;
+| 
+| 	char a[true == 1 ? 1 : -1];
+| 	char b[false == 0 ? 1 : -1];
+| 	char c[__bool_true_false_are_defined == 1 ? 1 : -1];
+| 	char d[(bool) -0.5 == true ? 1 : -1];
+| 	bool e = &s;
+| 	char f[(_Bool) -0.0 == false ? 1 : -1];
+| 	char g[true];
+| 	char h[sizeof (_Bool)];
+| 	char i[sizeof s.t];
+| 
+| int
+| main ()
+| {
+|  return !a + !b + !c + !d + !e + !f + !g + !h + !i;
+|   ;
+|   return 0;
+| }
+configure:3414: result: no
+configure:3416: checking for _Bool
+configure:3440: gcc -c -g -O2  conftest.c >&5
+conftest.c: In function `main':
+conftest.c:61: `_Bool' undeclared (first use in this function)
+conftest.c:61: (Each undeclared identifier is reported only once
+conftest.c:61: for each function it appears in.)
+conftest.c:61: parse error before `)'
+configure:3446: $? = 1
+configure: failed program was:
+| /* confdefs.h.  */
+| 
+| #define PACKAGE_NAME ""
+| #define PACKAGE_TARNAME ""
+| #define PACKAGE_VERSION ""
+| #define PACKAGE_STRING ""
+| #define PACKAGE_BUGREPORT ""
+| #define PACKAGE "complearn"
+| #define VERSION "0.6.2"
+| #define STDC_HEADERS 1
+| #define HAVE_SYS_TYPES_H 1
+| #define HAVE_SYS_STAT_H 1
+| #define HAVE_STDLIB_H 1
+| #define HAVE_STRING_H 1
+| #define HAVE_MEMORY_H 1
+| #define HAVE_STRINGS_H 1
+| #define HAVE_INTTYPES_H 1
+| #define HAVE_STDINT_H 1
+| #define HAVE_UNISTD_H 1
+| #define HAVE_STDLIB_H 1
+| #define HAVE_SYS_TIME_H 1
+| #define HAVE_UNISTD_H 1
+| /* end confdefs.h.  */
+| #include <stdio.h>
+| #if HAVE_SYS_TYPES_H
+| # include <sys/types.h>
+| #endif
+| #if HAVE_SYS_STAT_H
+| # include <sys/stat.h>
+| #endif
+| #if STDC_HEADERS
+| # include <stdlib.h>
+| # include <stddef.h>
+| #else
+| # if HAVE_STDLIB_H
+| #  include <stdlib.h>
+| # endif
+| #endif
+| #if HAVE_STRING_H
+| # if !STDC_HEADERS && HAVE_MEMORY_H
+| #  include <memory.h>
+| # endif
+| # include <string.h>
+| #endif
+| #if HAVE_STRINGS_H
+| # include <strings.h>
+| #endif
+| #if HAVE_INTTYPES_H
+| # include <inttypes.h>
+| #else
+| # if HAVE_STDINT_H
+| #  include <stdint.h>
+| # endif
+| #endif
+| #if HAVE_UNISTD_H
+| # include <unistd.h>
+| #endif
+| int
+| main ()
+| {
+| if ((_Bool *) 0)
+|   return 0;
+| if (sizeof (_Bool))
+|   return 0;
+|   ;
+|   return 0;
+| }
+configure:3469: result: no
+configure:3488: checking for an ANSI C-conforming const
+configure:3555: gcc -c -g -O2  conftest.c >&5
+configure:3561: $? = 0
+configure:3564: test -z 			 || test ! -s conftest.err
+configure:3567: $? = 0
+configure:3570: test -s conftest.o
+configure:3573: $? = 0
+configure:3584: result: yes
+configure:3729: creating ./config.status
+
+## ---------------------- ##
+## Running config.status. ##
+## ---------------------- ##
+
+This file was extended by config.status, which was
+generated by GNU Autoconf 2.59.  Invocation command line was
+
+  CONFIG_FILES    = 
+  CONFIG_HEADERS  = 
+  CONFIG_LINKS    = 
+  CONFIG_COMMANDS = 
+  $ ./config.status 
+
+on wax.rhouse.local
+
+config.status:728: creating Makefile
+config.status:728: creating doc/Makefile
+config.status:728: creating doc/man/Makefile
+config.status:728: creating bin/Makefile
+config.status:728: creating ext/lib/CompLearnLib/FoundComp.rb
+config.status:728: creating bin/ncd
+config.status:728: creating bin/ncdvector
+config.status:728: creating bin/ncdmatrix
+config.status:728: creating bin/labeltree
+config.status:728: creating bin/maketree
+config.status:728: creating bin/makesvm
+config.status:728: creating scripts/CompLearn.iss
+config.status:728: creating scripts/makeSetup.sh
+config.status:728: creating scripts/makedeb.zsh
+config.status:805: creating ext/config.h
+config.status:917: ext/config.h is unchanged
+config.status:1075: executing ext/Makefile commands
+
+## ---------------- ##
+## Cache variables. ##
+## ---------------- ##
+
+ac_cv_c_compiler_gnu=yes
+ac_cv_c_const=yes
+ac_cv_env_CC_set=
+ac_cv_env_CC_value=
+ac_cv_env_CFLAGS_set=
+ac_cv_env_CFLAGS_value=
+ac_cv_env_CPPFLAGS_set=
+ac_cv_env_CPPFLAGS_value=
+ac_cv_env_CPP_set=
+ac_cv_env_CPP_value=
+ac_cv_env_LDFLAGS_set=
+ac_cv_env_LDFLAGS_value=
+ac_cv_env_build_alias_set=
+ac_cv_env_build_alias_value=
+ac_cv_env_host_alias_set=
+ac_cv_env_host_alias_value=
+ac_cv_env_target_alias_set=
+ac_cv_env_target_alias_value=
+ac_cv_exeext=
+ac_cv_header_inttypes_h=yes
+ac_cv_header_memory_h=yes
+ac_cv_header_stdbool_h=no
+ac_cv_header_stdc=yes
+ac_cv_header_stdint_h=yes
+ac_cv_header_stdlib_h=yes
+ac_cv_header_string_h=yes
+ac_cv_header_strings_h=yes
+ac_cv_header_sys_stat_h=yes
+ac_cv_header_sys_time_h=yes
+ac_cv_header_sys_types_h=yes
+ac_cv_header_unistd_h=yes
+ac_cv_objext=o
+ac_cv_path_RUBYBIN=/usr/bin/ruby1.8
+ac_cv_path_install='/usr/bin/install -c'
+ac_cv_prog_CPP='gcc -E'
+ac_cv_prog_ac_ct_CC=gcc
+ac_cv_prog_ac_ct_RANLIB=ranlib
+ac_cv_prog_cc_g=yes
+ac_cv_prog_cc_stdc=
+ac_cv_prog_egrep='grep -E'
+ac_cv_prog_make_make_set=yes
+ac_cv_type__Bool=no
+
+## ----------------- ##
+## Output variables. ##
+## ----------------- ##
+
+ACLOCAL='aclocal'
+AUTOCONF='autoconf'
+AUTOHEADER='autoheader'
+AUTOMAKE='automake'
+CC='gcc'
+CFLAGS='-g -O2'
+CPP='gcc -E'
+CPPFLAGS=''
+DEFS='-DHAVE_CONFIG_H'
+ECHO_C=''
+ECHO_N='-n'
+ECHO_T=''
+EGREP='grep -E'
+EXEEXT=''
+FOUNDBZIP2='true'
+FOUNDGZIP='true'
+INSTALL_DATA='${INSTALL} -m 644'
+INSTALL_PROGRAM='${INSTALL}'
+INSTALL_SCRIPT='${INSTALL}'
+LDFLAGS=''
+LIBOBJS=''
+LIBS=''
+LTLIBOBJS=''
+MAKEINFO='makeinfo'
+OBJEXT='o'
+PACKAGE='complearn'
+PACKAGE_BUGREPORT=''
+PACKAGE_NAME=''
+PACKAGE_STRING=''
+PACKAGE_TARNAME=''
+PACKAGE_VERSION=''
+PATH_SEPARATOR=':'
+RANLIB='ranlib'
+RUBYBIN='/usr/bin/ruby1.8'
+SET_MAKE=''
+SHELL='/bin/sh'
+TOPDIR='/home/cilibrar/src/complearngem/complearn-0.6.2'
+VERSION='0.6.2'
+WINBUILDDIR='c:\build'
+ac_ct_CC='gcc'
+ac_ct_RANLIB='ranlib'
+bindir='${exec_prefix}/bin'
+build_alias=''
+datadir='${prefix}/share'
+exec_prefix='${prefix}'
+host_alias=''
+includedir='${prefix}/include'
+infodir='${prefix}/info'
+libdir='${exec_prefix}/lib'
+libexecdir='${exec_prefix}/libexec'
+localstatedir='${prefix}/var'
+mandir='${prefix}/man'
+oldincludedir='/usr/include'
+prefix='/usr/local'
+program_transform_name='s,x,x,'
+sbindir='${exec_prefix}/sbin'
+sharedstatedir='${prefix}/com'
+sysconfdir='${prefix}/etc'
+target_alias=''
+
+## ----------- ##
+## confdefs.h. ##
+## ----------- ##
+
+#define HAVE_INTTYPES_H 1
+#define HAVE_MEMORY_H 1
+#define HAVE_STDINT_H 1
+#define HAVE_STDLIB_H 1
+#define HAVE_STDLIB_H 1
+#define HAVE_STRINGS_H 1
+#define HAVE_STRING_H 1
+#define HAVE_SYS_STAT_H 1
+#define HAVE_SYS_TIME_H 1
+#define HAVE_SYS_TYPES_H 1
+#define HAVE_UNISTD_H 1
+#define HAVE_UNISTD_H 1
+#define PACKAGE "complearn"
+#define PACKAGE_BUGREPORT ""
+#define PACKAGE_NAME ""
+#define PACKAGE_STRING ""
+#define PACKAGE_TARNAME ""
+#define PACKAGE_VERSION ""
+#define STDC_HEADERS 1
+#define VERSION "0.6.2"
+
+configure: exit 0