complearn 0.6.2
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- data/AUTHORS +13 -0
- data/COPYING +340 -0
- data/ChangeLog +0 -0
- data/INSTALL +231 -0
- data/Makefile +352 -0
- data/Makefile.am +76 -0
- data/Makefile.in +352 -0
- data/NEWS +7 -0
- data/README +0 -0
- data/aclocal.m4 +104 -0
- data/bin/Makefile +209 -0
- data/bin/Makefile.am +8 -0
- data/bin/Makefile.in +209 -0
- data/bin/labeltree +68 -0
- data/bin/labeltree.in +68 -0
- data/bin/makesvm +70 -0
- data/bin/makesvm.in +70 -0
- data/bin/maketree +98 -0
- data/bin/maketree.in +98 -0
- data/bin/ncd +43 -0
- data/bin/ncd.in +43 -0
- data/bin/ncdmatrix +54 -0
- data/bin/ncdmatrix.in +54 -0
- data/bin/ncdvector +50 -0
- data/bin/ncdvector.in +50 -0
- data/complearn-0.6.2.gem +0 -0
- data/complearn.gemspec +57 -0
- data/config.log +597 -0
- data/config.status +1082 -0
- data/configure +4922 -0
- data/configure.ac +91 -0
- data/confstat5FpLBf/config.h +65 -0
- data/confstat5FpLBf/subs-1.sed +50 -0
- data/confstat5FpLBf/subs-2.sed +13 -0
- data/confstat5FpLBf/subs.frag +0 -0
- data/confstat5FpLBf/subs.sed +59 -0
- data/confstat5FpLBf/undefs.sed +24 -0
- data/doc/FAQ.txt +67 -0
- data/doc/Makefile +286 -0
- data/doc/Makefile.am +11 -0
- data/doc/Makefile.in +286 -0
- data/doc/devguide.txt +15 -0
- data/doc/example.complearnrc +14 -0
- data/doc/examples.txt +35 -0
- data/doc/man/Makefile +255 -0
- data/doc/man/Makefile.am +11 -0
- data/doc/man/Makefile.in +255 -0
- data/doc/man/complearn.5 +91 -0
- data/doc/man/labeltree.1 +35 -0
- data/doc/man/makesvm.1 +60 -0
- data/doc/man/maketree.1 +58 -0
- data/doc/man/ncd.1 +51 -0
- data/doc/man/ncdmatrix.1 +40 -0
- data/doc/man/ncdvector.1 +42 -0
- data/doc/readme.txt +101 -0
- data/doc/userguide.txt +46 -0
- data/examples/genes/blueWhale.txt +1 -0
- data/examples/genes/cat.txt +1 -0
- data/examples/genes/chimpanzee.txt +1 -0
- data/examples/genes/finWhale.txt +1 -0
- data/examples/genes/graySeal.txt +1 -0
- data/examples/genes/harborSeal.txt +1 -0
- data/examples/genes/horse.txt +1 -0
- data/examples/genes/human.txt +1 -0
- data/examples/genes/mouse.txt +1 -0
- data/examples/genes/rat.txt +1 -0
- data/ext/Makefile +167 -0
- data/ext/Quartet.c +399 -0
- data/ext/Quartet.h +62 -0
- data/ext/TreeScore.c +244 -0
- data/ext/TreeScore.h +3 -0
- data/ext/config.h +65 -0
- data/ext/config.h.in +64 -0
- data/ext/extconf.rb +3 -0
- data/ext/lib/CompLearnLib/CLConfig.rb +241 -0
- data/ext/lib/CompLearnLib/CompressionObject.rb +59 -0
- data/ext/lib/CompLearnLib/CompressionTask.rb +99 -0
- data/ext/lib/CompLearnLib/DistMatrix.rb +18 -0
- data/ext/lib/CompLearnLib/FoundComp.rb +10 -0
- data/ext/lib/CompLearnLib/FoundComp.rb.in +10 -0
- data/ext/lib/CompLearnLib/Ncd.rb +248 -0
- data/ext/lib/CompLearnLib/RunEnv.rb +150 -0
- data/ext/lib/CompLearnLib/Task.rb +39 -0
- data/ext/lib/CompLearnLib/TaskMaster.rb +13 -0
- data/ext/lib/CompLearnLib/TaskMasterMPI.rb +112 -0
- data/ext/lib/CompLearnLib/TaskMasterSingle.rb +39 -0
- data/ext/lib/CompLearnLib/Tree.rb +300 -0
- data/install-sh +294 -0
- data/missing +336 -0
- data/mkinstalldirs +111 -0
- data/o +24 -0
- data/scripts/CompLearn.iss +89 -0
- data/scripts/CompLearn.iss.in +89 -0
- data/scripts/debian/changelog +6 -0
- data/scripts/debian/control +14 -0
- data/scripts/makeSetup.sh +23 -0
- data/scripts/makeSetup.sh.in +23 -0
- data/scripts/makedeb.zsh +46 -0
- data/scripts/makedeb.zsh.in +46 -0
- data/tests/alltests.rb +2 -0
- data/tests/bz2test.rb +516 -0
- data/tests/sshagent-test.rb +48 -0
- data/tests/tests.rb +275 -0
- metadata +164 -0
data/install-sh
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#!/bin/sh
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#
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# install - install a program, script, or datafile
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#
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# This originates from X11R5 (mit/util/scripts/install.sh), which was
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# later released in X11R6 (xc/config/util/install.sh) with the
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# following copyright and license.
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#
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# Copyright (C) 1994 X Consortium
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#
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# Permission is hereby granted, free of charge, to any person obtaining a copy
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# of this software and associated documentation files (the "Software"), to
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# deal in the Software without restriction, including without limitation the
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# rights to use, copy, modify, merge, publish, distribute, sublicense, and/or
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# sell copies of the Software, and to permit persons to whom the Software is
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# furnished to do so, subject to the following conditions:
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#
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# The above copyright notice and this permission notice shall be included in
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# all copies or substantial portions of the Software.
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#
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# THE SOFTWARE IS PROVIDED "AS IS", WITHOUT WARRANTY OF ANY KIND, EXPRESS OR
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# IMPLIED, INCLUDING BUT NOT LIMITED TO THE WARRANTIES OF MERCHANTABILITY,
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# FITNESS FOR A PARTICULAR PURPOSE AND NONINFRINGEMENT. IN NO EVENT SHALL THE
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# X CONSORTIUM BE LIABLE FOR ANY CLAIM, DAMAGES OR OTHER LIABILITY, WHETHER IN
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# AN ACTION OF CONTRACT, TORT OR OTHERWISE, ARISING FROM, OUT OF OR IN CONNEC-
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# TION WITH THE SOFTWARE OR THE USE OR OTHER DEALINGS IN THE SOFTWARE.
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#
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# Except as contained in this notice, the name of the X Consortium shall not
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# be used in advertising or otherwise to promote the sale, use or other deal-
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# ings in this Software without prior written authorization from the X Consor-
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# tium.
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#
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#
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# FSF changes to this file are in the public domain.
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#
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# Calling this script install-sh is preferred over install.sh, to prevent
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# `make' implicit rules from creating a file called install from it
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# when there is no Makefile.
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#
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# This script is compatible with the BSD install script, but was written
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# from scratch. It can only install one file at a time, a restriction
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# shared with many OS's install programs.
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# set DOITPROG to echo to test this script
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# Don't use :- since 4.3BSD and earlier shells don't like it.
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doit="${DOITPROG-}"
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# put in absolute paths if you don't have them in your path; or use env. vars.
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mvprog="${MVPROG-mv}"
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cpprog="${CPPROG-cp}"
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chmodprog="${CHMODPROG-chmod}"
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chownprog="${CHOWNPROG-chown}"
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chgrpprog="${CHGRPPROG-chgrp}"
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stripprog="${STRIPPROG-strip}"
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rmprog="${RMPROG-rm}"
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mkdirprog="${MKDIRPROG-mkdir}"
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transformbasename=""
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transform_arg=""
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instcmd="$mvprog"
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chmodcmd="$chmodprog 0755"
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chowncmd=""
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chgrpcmd=""
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stripcmd=""
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rmcmd="$rmprog -f"
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mvcmd="$mvprog"
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src=""
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dst=""
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dir_arg=""
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while [ x"$1" != x ]; do
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case $1 in
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-c) instcmd=$cpprog
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shift
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continue;;
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-d) dir_arg=true
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shift
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continue;;
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-m) chmodcmd="$chmodprog $2"
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shift
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shift
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continue;;
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-o) chowncmd="$chownprog $2"
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shift
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shift
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continue;;
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-g) chgrpcmd="$chgrpprog $2"
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shift
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shift
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continue;;
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-s) stripcmd=$stripprog
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shift
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continue;;
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-t=*) transformarg=`echo $1 | sed 's/-t=//'`
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shift
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continue;;
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-b=*) transformbasename=`echo $1 | sed 's/-b=//'`
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shift
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continue;;
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*) if [ x"$src" = x ]
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then
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src=$1
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else
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# this colon is to work around a 386BSD /bin/sh bug
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:
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dst=$1
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fi
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shift
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continue;;
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esac
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done
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if [ x"$src" = x ]
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then
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echo "$0: no input file specified" >&2
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exit 1
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else
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:
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fi
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if [ x"$dir_arg" != x ]; then
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dst=$src
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src=""
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if [ -d "$dst" ]; then
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instcmd=:
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chmodcmd=""
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else
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instcmd=$mkdirprog
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fi
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else
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# Waiting for this to be detected by the "$instcmd $src $dsttmp" command
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# might cause directories to be created, which would be especially bad
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# if $src (and thus $dsttmp) contains '*'.
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if [ -f "$src" ] || [ -d "$src" ]
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then
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:
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else
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echo "$0: $src does not exist" >&2
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exit 1
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fi
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if [ x"$dst" = x ]
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then
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echo "$0: no destination specified" >&2
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exit 1
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else
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:
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fi
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# If destination is a directory, append the input filename; if your system
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# does not like double slashes in filenames, you may need to add some logic
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if [ -d "$dst" ]
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then
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dst=$dst/`basename "$src"`
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else
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:
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fi
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fi
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## this sed command emulates the dirname command
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dstdir=`echo "$dst" | sed -e 's,[^/]*$,,;s,/$,,;s,^$,.,'`
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# Make sure that the destination directory exists.
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# this part is taken from Noah Friedman's mkinstalldirs script
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# Skip lots of stat calls in the usual case.
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if [ ! -d "$dstdir" ]; then
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defaultIFS='
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'
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IFS="${IFS-$defaultIFS}"
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oIFS=$IFS
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# Some sh's can't handle IFS=/ for some reason.
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IFS='%'
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set - `echo "$dstdir" | sed -e 's@/@%@g' -e 's@^%@/@'`
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IFS=$oIFS
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pathcomp=''
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while [ $# -ne 0 ] ; do
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pathcomp=$pathcomp$1
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shift
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if [ ! -d "$pathcomp" ] ;
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then
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$mkdirprog "$pathcomp"
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else
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:
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fi
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pathcomp=$pathcomp/
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done
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fi
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if [ x"$dir_arg" != x ]
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then
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$doit $instcmd "$dst" &&
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if [ x"$chowncmd" != x ]; then $doit $chowncmd "$dst"; else : ; fi &&
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if [ x"$chgrpcmd" != x ]; then $doit $chgrpcmd "$dst"; else : ; fi &&
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if [ x"$stripcmd" != x ]; then $doit $stripcmd "$dst"; else : ; fi &&
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if [ x"$chmodcmd" != x ]; then $doit $chmodcmd "$dst"; else : ; fi
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else
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# If we're going to rename the final executable, determine the name now.
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if [ x"$transformarg" = x ]
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then
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dstfile=`basename "$dst"`
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else
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dstfile=`basename "$dst" $transformbasename |
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sed $transformarg`$transformbasename
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fi
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# don't allow the sed command to completely eliminate the filename
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if [ x"$dstfile" = x ]
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then
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dstfile=`basename "$dst"`
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else
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:
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fi
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# Make a couple of temp file names in the proper directory.
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dsttmp=$dstdir/_inst.$$_
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rmtmp=$dstdir/_rm.$$_
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# Trap to clean up temp files at exit.
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trap 'status=$?; rm -f "$dsttmp" "$rmtmp" && exit $status' 0
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trap '(exit $?); exit' 1 2 13 15
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# Move or copy the file name to the temp name
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$doit $instcmd "$src" "$dsttmp" &&
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# and set any options; do chmod last to preserve setuid bits
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# If any of these fail, we abort the whole thing. If we want to
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# ignore errors from any of these, just make sure not to ignore
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# errors from the above "$doit $instcmd $src $dsttmp" command.
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if [ x"$chowncmd" != x ]; then $doit $chowncmd "$dsttmp"; else :;fi &&
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if [ x"$chgrpcmd" != x ]; then $doit $chgrpcmd "$dsttmp"; else :;fi &&
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if [ x"$stripcmd" != x ]; then $doit $stripcmd "$dsttmp"; else :;fi &&
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if [ x"$chmodcmd" != x ]; then $doit $chmodcmd "$dsttmp"; else :;fi &&
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# Now remove or move aside any old file at destination location. We try this
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# two ways since rm can't unlink itself on some systems and the destination
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# file might be busy for other reasons. In this case, the final cleanup
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# might fail but the new file should still install successfully.
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{
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if [ -f "$dstdir/$dstfile" ]
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then
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$doit $rmcmd -f "$dstdir/$dstfile" 2>/dev/null ||
|
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$doit $mvcmd -f "$dstdir/$dstfile" "$rmtmp" 2>/dev/null ||
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{
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echo "$0: cannot unlink or rename $dstdir/$dstfile" >&2
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(exit 1); exit
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}
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else
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:
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fi
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} &&
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# Now rename the file to the real destination.
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$doit $mvcmd "$dsttmp" "$dstdir/$dstfile"
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|
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fi &&
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# The final little trick to "correctly" pass the exit status to the exit trap.
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{
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(exit 0); exit
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}
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data/missing
ADDED
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#! /bin/sh
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# Common stub for a few missing GNU programs while installing.
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3
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# Copyright (C) 1996, 1997, 1999, 2000, 2002, 2003 Free Software Foundation, Inc.
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# Originally by Fran,cois Pinard <pinard@iro.umontreal.ca>, 1996.
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5
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6
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# This program is free software; you can redistribute it and/or modify
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# it under the terms of the GNU General Public License as published by
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8
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# the Free Software Foundation; either version 2, or (at your option)
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# any later version.
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# This program is distributed in the hope that it will be useful,
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# but WITHOUT ANY WARRANTY; without even the implied warranty of
|
13
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# MERCHANTABILITY or FITNESS FOR A PARTICULAR PURPOSE. See the
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14
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# GNU General Public License for more details.
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15
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# You should have received a copy of the GNU General Public License
|
17
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# along with this program; if not, write to the Free Software
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# Foundation, Inc., 59 Temple Place - Suite 330, Boston, MA
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# 02111-1307, USA.
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# As a special exception to the GNU General Public License, if you
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# distribute this file as part of a program that contains a
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# configuration script generated by Autoconf, you may include it under
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# the same distribution terms that you use for the rest of that program.
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if test $# -eq 0; then
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echo 1>&2 "Try \`$0 --help' for more information"
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exit 1
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fi
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run=:
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# In the cases where this matters, `missing' is being run in the
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# srcdir already.
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if test -f configure.ac; then
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configure_ac=configure.ac
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else
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configure_ac=configure.in
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fi
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case "$1" in
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--run)
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# Try to run requested program, and just exit if it succeeds.
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run=
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shift
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"$@" && exit 0
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;;
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esac
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# If it does not exist, or fails to run (possibly an outdated version),
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# try to emulate it.
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case "$1" in
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-h|--h|--he|--hel|--help)
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echo "\
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$0 [OPTION]... PROGRAM [ARGUMENT]...
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+
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Handle \`PROGRAM [ARGUMENT]...' for when PROGRAM is missing, or return an
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error status if there is no known handling for PROGRAM.
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Options:
|
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-h, --help display this help and exit
|
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-v, --version output version information and exit
|
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--run try to run the given command, and emulate it if it fails
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Supported PROGRAM values:
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aclocal touch file \`aclocal.m4'
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autoconf touch file \`configure'
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+
autoheader touch file \`config.h.in'
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automake touch all \`Makefile.in' files
|
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bison create \`y.tab.[ch]', if possible, from existing .[ch]
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flex create \`lex.yy.c', if possible, from existing .c
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help2man touch the output file
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lex create \`lex.yy.c', if possible, from existing .c
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makeinfo touch the output file
|
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tar try tar, gnutar, gtar, then tar without non-portable flags
|
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yacc create \`y.tab.[ch]', if possible, from existing .[ch]"
|
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+
;;
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+
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-v|--v|--ve|--ver|--vers|--versi|--versio|--version)
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echo "missing 0.4 - GNU automake"
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;;
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+
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-*)
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echo 1>&2 "$0: Unknown \`$1' option"
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echo 1>&2 "Try \`$0 --help' for more information"
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+
exit 1
|
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+
;;
|
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+
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aclocal*)
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if test -z "$run" && ($1 --version) > /dev/null 2>&1; then
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# We have it, but it failed.
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exit 1
|
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fi
|
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+
|
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echo 1>&2 "\
|
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WARNING: \`$1' is missing on your system. You should only need it if
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you modified \`acinclude.m4' or \`${configure_ac}'. You might want
|
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+
to install the \`Automake' and \`Perl' packages. Grab them from
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any GNU archive site."
|
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+
touch aclocal.m4
|
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;;
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autoconf)
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if test -z "$run" && ($1 --version) > /dev/null 2>&1; then
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# We have it, but it failed.
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exit 1
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fi
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+
echo 1>&2 "\
|
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+
WARNING: \`$1' is missing on your system. You should only need it if
|
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you modified \`${configure_ac}'. You might want to install the
|
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\`Autoconf' and \`GNU m4' packages. Grab them from any GNU
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+
archive site."
|
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touch configure
|
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;;
|
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autoheader)
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if test -z "$run" && ($1 --version) > /dev/null 2>&1; then
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# We have it, but it failed.
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exit 1
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fi
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echo 1>&2 "\
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WARNING: \`$1' is missing on your system. You should only need it if
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you modified \`acconfig.h' or \`${configure_ac}'. You might want
|
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to install the \`Autoconf' and \`GNU m4' packages. Grab them
|
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from any GNU archive site."
|
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+
files=`sed -n 's/^[ ]*A[CM]_CONFIG_HEADER(\([^)]*\)).*/\1/p' ${configure_ac}`
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test -z "$files" && files="config.h"
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touch_files=
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for f in $files; do
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case "$f" in
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*:*) touch_files="$touch_files "`echo "$f" |
|
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sed -e 's/^[^:]*://' -e 's/:.*//'`;;
|
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*) touch_files="$touch_files $f.in";;
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esac
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done
|
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touch $touch_files
|
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+
;;
|
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|
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automake*)
|
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if test -z "$run" && ($1 --version) > /dev/null 2>&1; then
|
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# We have it, but it failed.
|
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exit 1
|
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+
fi
|
147
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+
|
148
|
+
echo 1>&2 "\
|
149
|
+
WARNING: \`$1' is missing on your system. You should only need it if
|
150
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+
you modified \`Makefile.am', \`acinclude.m4' or \`${configure_ac}'.
|
151
|
+
You might want to install the \`Automake' and \`Perl' packages.
|
152
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+
Grab them from any GNU archive site."
|
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+
find . -type f -name Makefile.am -print |
|
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+
sed 's/\.am$/.in/' |
|
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+
while read f; do touch "$f"; done
|
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+
;;
|
157
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+
|
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+
autom4te)
|
159
|
+
if test -z "$run" && ($1 --version) > /dev/null 2>&1; then
|
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# We have it, but it failed.
|
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exit 1
|
162
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+
fi
|
163
|
+
|
164
|
+
echo 1>&2 "\
|
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|
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WARNING: \`$1' is needed, and you do not seem to have it handy on your
|
166
|
+
system. You might have modified some files without having the
|
167
|
+
proper tools for further handling them.
|
168
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+
You can get \`$1' as part of \`Autoconf' from any GNU
|
169
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+
archive site."
|
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+
|
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file=`echo "$*" | sed -n 's/.*--output[ =]*\([^ ]*\).*/\1/p'`
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test -z "$file" && file=`echo "$*" | sed -n 's/.*-o[ ]*\([^ ]*\).*/\1/p'`
|
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if test -f "$file"; then
|
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touch $file
|
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else
|
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+
test -z "$file" || exec >$file
|
177
|
+
echo "#! /bin/sh"
|
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+
echo "# Created by GNU Automake missing as a replacement of"
|
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+
echo "# $ $@"
|
180
|
+
echo "exit 0"
|
181
|
+
chmod +x $file
|
182
|
+
exit 1
|
183
|
+
fi
|
184
|
+
;;
|
185
|
+
|
186
|
+
bison|yacc)
|
187
|
+
echo 1>&2 "\
|
188
|
+
WARNING: \`$1' is missing on your system. You should only need it if
|
189
|
+
you modified a \`.y' file. You may need the \`Bison' package
|
190
|
+
in order for those modifications to take effect. You can get
|
191
|
+
\`Bison' from any GNU archive site."
|
192
|
+
rm -f y.tab.c y.tab.h
|
193
|
+
if [ $# -ne 1 ]; then
|
194
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+
eval LASTARG="\${$#}"
|
195
|
+
case "$LASTARG" in
|
196
|
+
*.y)
|
197
|
+
SRCFILE=`echo "$LASTARG" | sed 's/y$/c/'`
|
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+
if [ -f "$SRCFILE" ]; then
|
199
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cp "$SRCFILE" y.tab.c
|
200
|
+
fi
|
201
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+
SRCFILE=`echo "$LASTARG" | sed 's/y$/h/'`
|
202
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+
if [ -f "$SRCFILE" ]; then
|
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+
cp "$SRCFILE" y.tab.h
|
204
|
+
fi
|
205
|
+
;;
|
206
|
+
esac
|
207
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+
fi
|
208
|
+
if [ ! -f y.tab.h ]; then
|
209
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echo >y.tab.h
|
210
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fi
|
211
|
+
if [ ! -f y.tab.c ]; then
|
212
|
+
echo 'main() { return 0; }' >y.tab.c
|
213
|
+
fi
|
214
|
+
;;
|
215
|
+
|
216
|
+
lex|flex)
|
217
|
+
echo 1>&2 "\
|
218
|
+
WARNING: \`$1' is missing on your system. You should only need it if
|
219
|
+
you modified a \`.l' file. You may need the \`Flex' package
|
220
|
+
in order for those modifications to take effect. You can get
|
221
|
+
\`Flex' from any GNU archive site."
|
222
|
+
rm -f lex.yy.c
|
223
|
+
if [ $# -ne 1 ]; then
|
224
|
+
eval LASTARG="\${$#}"
|
225
|
+
case "$LASTARG" in
|
226
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+
*.l)
|
227
|
+
SRCFILE=`echo "$LASTARG" | sed 's/l$/c/'`
|
228
|
+
if [ -f "$SRCFILE" ]; then
|
229
|
+
cp "$SRCFILE" lex.yy.c
|
230
|
+
fi
|
231
|
+
;;
|
232
|
+
esac
|
233
|
+
fi
|
234
|
+
if [ ! -f lex.yy.c ]; then
|
235
|
+
echo 'main() { return 0; }' >lex.yy.c
|
236
|
+
fi
|
237
|
+
;;
|
238
|
+
|
239
|
+
help2man)
|
240
|
+
if test -z "$run" && ($1 --version) > /dev/null 2>&1; then
|
241
|
+
# We have it, but it failed.
|
242
|
+
exit 1
|
243
|
+
fi
|
244
|
+
|
245
|
+
echo 1>&2 "\
|
246
|
+
WARNING: \`$1' is missing on your system. You should only need it if
|
247
|
+
you modified a dependency of a manual page. You may need the
|
248
|
+
\`Help2man' package in order for those modifications to take
|
249
|
+
effect. You can get \`Help2man' from any GNU archive site."
|
250
|
+
|
251
|
+
file=`echo "$*" | sed -n 's/.*-o \([^ ]*\).*/\1/p'`
|
252
|
+
if test -z "$file"; then
|
253
|
+
file=`echo "$*" | sed -n 's/.*--output=\([^ ]*\).*/\1/p'`
|
254
|
+
fi
|
255
|
+
if [ -f "$file" ]; then
|
256
|
+
touch $file
|
257
|
+
else
|
258
|
+
test -z "$file" || exec >$file
|
259
|
+
echo ".ab help2man is required to generate this page"
|
260
|
+
exit 1
|
261
|
+
fi
|
262
|
+
;;
|
263
|
+
|
264
|
+
makeinfo)
|
265
|
+
if test -z "$run" && (makeinfo --version) > /dev/null 2>&1; then
|
266
|
+
# We have makeinfo, but it failed.
|
267
|
+
exit 1
|
268
|
+
fi
|
269
|
+
|
270
|
+
echo 1>&2 "\
|
271
|
+
WARNING: \`$1' is missing on your system. You should only need it if
|
272
|
+
you modified a \`.texi' or \`.texinfo' file, or any other file
|
273
|
+
indirectly affecting the aspect of the manual. The spurious
|
274
|
+
call might also be the consequence of using a buggy \`make' (AIX,
|
275
|
+
DU, IRIX). You might want to install the \`Texinfo' package or
|
276
|
+
the \`GNU make' package. Grab either from any GNU archive site."
|
277
|
+
file=`echo "$*" | sed -n 's/.*-o \([^ ]*\).*/\1/p'`
|
278
|
+
if test -z "$file"; then
|
279
|
+
file=`echo "$*" | sed 's/.* \([^ ]*\) *$/\1/'`
|
280
|
+
file=`sed -n '/^@setfilename/ { s/.* \([^ ]*\) *$/\1/; p; q; }' $file`
|
281
|
+
fi
|
282
|
+
touch $file
|
283
|
+
;;
|
284
|
+
|
285
|
+
tar)
|
286
|
+
shift
|
287
|
+
if test -n "$run"; then
|
288
|
+
echo 1>&2 "ERROR: \`tar' requires --run"
|
289
|
+
exit 1
|
290
|
+
fi
|
291
|
+
|
292
|
+
# We have already tried tar in the generic part.
|
293
|
+
# Look for gnutar/gtar before invocation to avoid ugly error
|
294
|
+
# messages.
|
295
|
+
if (gnutar --version > /dev/null 2>&1); then
|
296
|
+
gnutar "$@" && exit 0
|
297
|
+
fi
|
298
|
+
if (gtar --version > /dev/null 2>&1); then
|
299
|
+
gtar "$@" && exit 0
|
300
|
+
fi
|
301
|
+
firstarg="$1"
|
302
|
+
if shift; then
|
303
|
+
case "$firstarg" in
|
304
|
+
*o*)
|
305
|
+
firstarg=`echo "$firstarg" | sed s/o//`
|
306
|
+
tar "$firstarg" "$@" && exit 0
|
307
|
+
;;
|
308
|
+
esac
|
309
|
+
case "$firstarg" in
|
310
|
+
*h*)
|
311
|
+
firstarg=`echo "$firstarg" | sed s/h//`
|
312
|
+
tar "$firstarg" "$@" && exit 0
|
313
|
+
;;
|
314
|
+
esac
|
315
|
+
fi
|
316
|
+
|
317
|
+
echo 1>&2 "\
|
318
|
+
WARNING: I can't seem to be able to run \`tar' with the given arguments.
|
319
|
+
You may want to install GNU tar or Free paxutils, or check the
|
320
|
+
command line arguments."
|
321
|
+
exit 1
|
322
|
+
;;
|
323
|
+
|
324
|
+
*)
|
325
|
+
echo 1>&2 "\
|
326
|
+
WARNING: \`$1' is needed, and you do not seem to have it handy on your
|
327
|
+
system. You might have modified some files without having the
|
328
|
+
proper tools for further handling them. Check the \`README' file,
|
329
|
+
it often tells you about the needed prerequisites for installing
|
330
|
+
this package. You may also peek at any GNU archive site, in case
|
331
|
+
some other package would contain this missing \`$1' program."
|
332
|
+
exit 1
|
333
|
+
;;
|
334
|
+
esac
|
335
|
+
|
336
|
+
exit 0
|