complearn 0.6.2

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Files changed (104) hide show
  1. data/AUTHORS +13 -0
  2. data/COPYING +340 -0
  3. data/ChangeLog +0 -0
  4. data/INSTALL +231 -0
  5. data/Makefile +352 -0
  6. data/Makefile.am +76 -0
  7. data/Makefile.in +352 -0
  8. data/NEWS +7 -0
  9. data/README +0 -0
  10. data/aclocal.m4 +104 -0
  11. data/bin/Makefile +209 -0
  12. data/bin/Makefile.am +8 -0
  13. data/bin/Makefile.in +209 -0
  14. data/bin/labeltree +68 -0
  15. data/bin/labeltree.in +68 -0
  16. data/bin/makesvm +70 -0
  17. data/bin/makesvm.in +70 -0
  18. data/bin/maketree +98 -0
  19. data/bin/maketree.in +98 -0
  20. data/bin/ncd +43 -0
  21. data/bin/ncd.in +43 -0
  22. data/bin/ncdmatrix +54 -0
  23. data/bin/ncdmatrix.in +54 -0
  24. data/bin/ncdvector +50 -0
  25. data/bin/ncdvector.in +50 -0
  26. data/complearn-0.6.2.gem +0 -0
  27. data/complearn.gemspec +57 -0
  28. data/config.log +597 -0
  29. data/config.status +1082 -0
  30. data/configure +4922 -0
  31. data/configure.ac +91 -0
  32. data/confstat5FpLBf/config.h +65 -0
  33. data/confstat5FpLBf/subs-1.sed +50 -0
  34. data/confstat5FpLBf/subs-2.sed +13 -0
  35. data/confstat5FpLBf/subs.frag +0 -0
  36. data/confstat5FpLBf/subs.sed +59 -0
  37. data/confstat5FpLBf/undefs.sed +24 -0
  38. data/doc/FAQ.txt +67 -0
  39. data/doc/Makefile +286 -0
  40. data/doc/Makefile.am +11 -0
  41. data/doc/Makefile.in +286 -0
  42. data/doc/devguide.txt +15 -0
  43. data/doc/example.complearnrc +14 -0
  44. data/doc/examples.txt +35 -0
  45. data/doc/man/Makefile +255 -0
  46. data/doc/man/Makefile.am +11 -0
  47. data/doc/man/Makefile.in +255 -0
  48. data/doc/man/complearn.5 +91 -0
  49. data/doc/man/labeltree.1 +35 -0
  50. data/doc/man/makesvm.1 +60 -0
  51. data/doc/man/maketree.1 +58 -0
  52. data/doc/man/ncd.1 +51 -0
  53. data/doc/man/ncdmatrix.1 +40 -0
  54. data/doc/man/ncdvector.1 +42 -0
  55. data/doc/readme.txt +101 -0
  56. data/doc/userguide.txt +46 -0
  57. data/examples/genes/blueWhale.txt +1 -0
  58. data/examples/genes/cat.txt +1 -0
  59. data/examples/genes/chimpanzee.txt +1 -0
  60. data/examples/genes/finWhale.txt +1 -0
  61. data/examples/genes/graySeal.txt +1 -0
  62. data/examples/genes/harborSeal.txt +1 -0
  63. data/examples/genes/horse.txt +1 -0
  64. data/examples/genes/human.txt +1 -0
  65. data/examples/genes/mouse.txt +1 -0
  66. data/examples/genes/rat.txt +1 -0
  67. data/ext/Makefile +167 -0
  68. data/ext/Quartet.c +399 -0
  69. data/ext/Quartet.h +62 -0
  70. data/ext/TreeScore.c +244 -0
  71. data/ext/TreeScore.h +3 -0
  72. data/ext/config.h +65 -0
  73. data/ext/config.h.in +64 -0
  74. data/ext/extconf.rb +3 -0
  75. data/ext/lib/CompLearnLib/CLConfig.rb +241 -0
  76. data/ext/lib/CompLearnLib/CompressionObject.rb +59 -0
  77. data/ext/lib/CompLearnLib/CompressionTask.rb +99 -0
  78. data/ext/lib/CompLearnLib/DistMatrix.rb +18 -0
  79. data/ext/lib/CompLearnLib/FoundComp.rb +10 -0
  80. data/ext/lib/CompLearnLib/FoundComp.rb.in +10 -0
  81. data/ext/lib/CompLearnLib/Ncd.rb +248 -0
  82. data/ext/lib/CompLearnLib/RunEnv.rb +150 -0
  83. data/ext/lib/CompLearnLib/Task.rb +39 -0
  84. data/ext/lib/CompLearnLib/TaskMaster.rb +13 -0
  85. data/ext/lib/CompLearnLib/TaskMasterMPI.rb +112 -0
  86. data/ext/lib/CompLearnLib/TaskMasterSingle.rb +39 -0
  87. data/ext/lib/CompLearnLib/Tree.rb +300 -0
  88. data/install-sh +294 -0
  89. data/missing +336 -0
  90. data/mkinstalldirs +111 -0
  91. data/o +24 -0
  92. data/scripts/CompLearn.iss +89 -0
  93. data/scripts/CompLearn.iss.in +89 -0
  94. data/scripts/debian/changelog +6 -0
  95. data/scripts/debian/control +14 -0
  96. data/scripts/makeSetup.sh +23 -0
  97. data/scripts/makeSetup.sh.in +23 -0
  98. data/scripts/makedeb.zsh +46 -0
  99. data/scripts/makedeb.zsh.in +46 -0
  100. data/tests/alltests.rb +2 -0
  101. data/tests/bz2test.rb +516 -0
  102. data/tests/sshagent-test.rb +48 -0
  103. data/tests/tests.rb +275 -0
  104. metadata +164 -0
@@ -0,0 +1,294 @@
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+ #!/bin/sh
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+ #
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+ # install - install a program, script, or datafile
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+ #
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+ # This originates from X11R5 (mit/util/scripts/install.sh), which was
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+ # later released in X11R6 (xc/config/util/install.sh) with the
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+ # following copyright and license.
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+ #
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+ # Copyright (C) 1994 X Consortium
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+ #
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+ # Permission is hereby granted, free of charge, to any person obtaining a copy
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+ # of this software and associated documentation files (the "Software"), to
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+ # deal in the Software without restriction, including without limitation the
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+ # rights to use, copy, modify, merge, publish, distribute, sublicense, and/or
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+ # sell copies of the Software, and to permit persons to whom the Software is
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+ # furnished to do so, subject to the following conditions:
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+ #
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+ # The above copyright notice and this permission notice shall be included in
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+ # all copies or substantial portions of the Software.
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+ #
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+ # THE SOFTWARE IS PROVIDED "AS IS", WITHOUT WARRANTY OF ANY KIND, EXPRESS OR
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+ # IMPLIED, INCLUDING BUT NOT LIMITED TO THE WARRANTIES OF MERCHANTABILITY,
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+ # FITNESS FOR A PARTICULAR PURPOSE AND NONINFRINGEMENT. IN NO EVENT SHALL THE
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+ # X CONSORTIUM BE LIABLE FOR ANY CLAIM, DAMAGES OR OTHER LIABILITY, WHETHER IN
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+ # AN ACTION OF CONTRACT, TORT OR OTHERWISE, ARISING FROM, OUT OF OR IN CONNEC-
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+ # TION WITH THE SOFTWARE OR THE USE OR OTHER DEALINGS IN THE SOFTWARE.
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+ #
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+ # Except as contained in this notice, the name of the X Consortium shall not
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+ # be used in advertising or otherwise to promote the sale, use or other deal-
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+ # ings in this Software without prior written authorization from the X Consor-
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+ # tium.
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+ #
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+ #
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+ # FSF changes to this file are in the public domain.
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+ #
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+ # Calling this script install-sh is preferred over install.sh, to prevent
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+ # `make' implicit rules from creating a file called install from it
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+ # when there is no Makefile.
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+ #
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+ # This script is compatible with the BSD install script, but was written
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+ # from scratch. It can only install one file at a time, a restriction
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+ # shared with many OS's install programs.
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+
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+
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+ # set DOITPROG to echo to test this script
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+
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+ # Don't use :- since 4.3BSD and earlier shells don't like it.
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+ doit="${DOITPROG-}"
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+
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+
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+ # put in absolute paths if you don't have them in your path; or use env. vars.
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+
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+ mvprog="${MVPROG-mv}"
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+ cpprog="${CPPROG-cp}"
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+ chmodprog="${CHMODPROG-chmod}"
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+ chownprog="${CHOWNPROG-chown}"
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+ chgrpprog="${CHGRPPROG-chgrp}"
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+ stripprog="${STRIPPROG-strip}"
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+ rmprog="${RMPROG-rm}"
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+ mkdirprog="${MKDIRPROG-mkdir}"
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+
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+ transformbasename=""
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+ transform_arg=""
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+ instcmd="$mvprog"
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+ chmodcmd="$chmodprog 0755"
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+ chowncmd=""
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+ chgrpcmd=""
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+ stripcmd=""
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+ rmcmd="$rmprog -f"
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+ mvcmd="$mvprog"
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+ src=""
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+ dst=""
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+ dir_arg=""
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+
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+ while [ x"$1" != x ]; do
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+ case $1 in
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+ -c) instcmd=$cpprog
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+ shift
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+ continue;;
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+
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+ -d) dir_arg=true
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+ shift
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+ continue;;
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+
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+ -m) chmodcmd="$chmodprog $2"
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+ shift
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+ shift
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+ continue;;
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+
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+ -o) chowncmd="$chownprog $2"
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+ shift
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+ shift
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+ continue;;
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+
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+ -g) chgrpcmd="$chgrpprog $2"
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+ shift
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+ shift
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+ continue;;
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+
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+ -s) stripcmd=$stripprog
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+ shift
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+ continue;;
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+
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+ -t=*) transformarg=`echo $1 | sed 's/-t=//'`
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+ shift
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+ continue;;
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+
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+ -b=*) transformbasename=`echo $1 | sed 's/-b=//'`
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+ shift
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+ continue;;
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+
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+ *) if [ x"$src" = x ]
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+ then
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+ src=$1
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+ else
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+ # this colon is to work around a 386BSD /bin/sh bug
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+ :
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+ dst=$1
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+ fi
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+ shift
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+ continue;;
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+ esac
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+ done
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+
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+ if [ x"$src" = x ]
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+ then
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+ echo "$0: no input file specified" >&2
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+ exit 1
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+ else
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+ :
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+ fi
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+
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+ if [ x"$dir_arg" != x ]; then
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+ dst=$src
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+ src=""
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+
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+ if [ -d "$dst" ]; then
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+ instcmd=:
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+ chmodcmd=""
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+ else
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+ instcmd=$mkdirprog
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+ fi
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+ else
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+
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+ # Waiting for this to be detected by the "$instcmd $src $dsttmp" command
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+ # might cause directories to be created, which would be especially bad
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+ # if $src (and thus $dsttmp) contains '*'.
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+
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+ if [ -f "$src" ] || [ -d "$src" ]
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+ then
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+ :
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+ else
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+ echo "$0: $src does not exist" >&2
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+ exit 1
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+ fi
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+
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+ if [ x"$dst" = x ]
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+ then
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+ echo "$0: no destination specified" >&2
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+ exit 1
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+ else
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+ :
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+ fi
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+
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+ # If destination is a directory, append the input filename; if your system
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+ # does not like double slashes in filenames, you may need to add some logic
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+
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+ if [ -d "$dst" ]
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+ then
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+ dst=$dst/`basename "$src"`
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+ else
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+ :
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+ fi
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+ fi
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+
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+ ## this sed command emulates the dirname command
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+ dstdir=`echo "$dst" | sed -e 's,[^/]*$,,;s,/$,,;s,^$,.,'`
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+
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+ # Make sure that the destination directory exists.
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+ # this part is taken from Noah Friedman's mkinstalldirs script
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+
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+ # Skip lots of stat calls in the usual case.
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+ if [ ! -d "$dstdir" ]; then
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+ defaultIFS='
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+ '
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+ IFS="${IFS-$defaultIFS}"
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+
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+ oIFS=$IFS
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+ # Some sh's can't handle IFS=/ for some reason.
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+ IFS='%'
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+ set - `echo "$dstdir" | sed -e 's@/@%@g' -e 's@^%@/@'`
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+ IFS=$oIFS
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+
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+ pathcomp=''
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+
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+ while [ $# -ne 0 ] ; do
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+ pathcomp=$pathcomp$1
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+ shift
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+
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+ if [ ! -d "$pathcomp" ] ;
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+ then
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+ $mkdirprog "$pathcomp"
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+ else
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+ :
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+ fi
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+
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+ pathcomp=$pathcomp/
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+ done
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+ fi
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+
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+ if [ x"$dir_arg" != x ]
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+ then
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+ $doit $instcmd "$dst" &&
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+
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+ if [ x"$chowncmd" != x ]; then $doit $chowncmd "$dst"; else : ; fi &&
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+ if [ x"$chgrpcmd" != x ]; then $doit $chgrpcmd "$dst"; else : ; fi &&
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+ if [ x"$stripcmd" != x ]; then $doit $stripcmd "$dst"; else : ; fi &&
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+ if [ x"$chmodcmd" != x ]; then $doit $chmodcmd "$dst"; else : ; fi
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+ else
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+
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+ # If we're going to rename the final executable, determine the name now.
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+
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+ if [ x"$transformarg" = x ]
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+ then
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+ dstfile=`basename "$dst"`
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+ else
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+ dstfile=`basename "$dst" $transformbasename |
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+ sed $transformarg`$transformbasename
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+ fi
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+
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+ # don't allow the sed command to completely eliminate the filename
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+
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+ if [ x"$dstfile" = x ]
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+ then
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+ dstfile=`basename "$dst"`
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+ else
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+ :
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+ fi
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+
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+ # Make a couple of temp file names in the proper directory.
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+
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+ dsttmp=$dstdir/_inst.$$_
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+ rmtmp=$dstdir/_rm.$$_
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+
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+ # Trap to clean up temp files at exit.
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+
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+ trap 'status=$?; rm -f "$dsttmp" "$rmtmp" && exit $status' 0
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+ trap '(exit $?); exit' 1 2 13 15
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+
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+ # Move or copy the file name to the temp name
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+
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+ $doit $instcmd "$src" "$dsttmp" &&
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+
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+ # and set any options; do chmod last to preserve setuid bits
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+
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+ # If any of these fail, we abort the whole thing. If we want to
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+ # ignore errors from any of these, just make sure not to ignore
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+ # errors from the above "$doit $instcmd $src $dsttmp" command.
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+
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+ if [ x"$chowncmd" != x ]; then $doit $chowncmd "$dsttmp"; else :;fi &&
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+ if [ x"$chgrpcmd" != x ]; then $doit $chgrpcmd "$dsttmp"; else :;fi &&
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+ if [ x"$stripcmd" != x ]; then $doit $stripcmd "$dsttmp"; else :;fi &&
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+ if [ x"$chmodcmd" != x ]; then $doit $chmodcmd "$dsttmp"; else :;fi &&
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+
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+ # Now remove or move aside any old file at destination location. We try this
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+ # two ways since rm can't unlink itself on some systems and the destination
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+ # file might be busy for other reasons. In this case, the final cleanup
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+ # might fail but the new file should still install successfully.
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+
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+ {
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+ if [ -f "$dstdir/$dstfile" ]
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+ then
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+ $doit $rmcmd -f "$dstdir/$dstfile" 2>/dev/null ||
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+ $doit $mvcmd -f "$dstdir/$dstfile" "$rmtmp" 2>/dev/null ||
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+ {
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+ echo "$0: cannot unlink or rename $dstdir/$dstfile" >&2
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+ (exit 1); exit
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+ }
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+ else
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+ :
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+ fi
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+ } &&
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+
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+ # Now rename the file to the real destination.
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+
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+ $doit $mvcmd "$dsttmp" "$dstdir/$dstfile"
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+
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+ fi &&
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+
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+ # The final little trick to "correctly" pass the exit status to the exit trap.
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+
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+ {
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+ (exit 0); exit
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+ }
data/missing ADDED
@@ -0,0 +1,336 @@
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+ #! /bin/sh
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+ # Common stub for a few missing GNU programs while installing.
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+ # Copyright (C) 1996, 1997, 1999, 2000, 2002, 2003 Free Software Foundation, Inc.
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+ # Originally by Fran,cois Pinard <pinard@iro.umontreal.ca>, 1996.
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+
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+ # This program is free software; you can redistribute it and/or modify
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+ # it under the terms of the GNU General Public License as published by
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+ # the Free Software Foundation; either version 2, or (at your option)
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+ # any later version.
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+
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+ # This program is distributed in the hope that it will be useful,
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+ # but WITHOUT ANY WARRANTY; without even the implied warranty of
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+ # MERCHANTABILITY or FITNESS FOR A PARTICULAR PURPOSE. See the
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+ # GNU General Public License for more details.
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+
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+ # You should have received a copy of the GNU General Public License
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+ # along with this program; if not, write to the Free Software
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+ # Foundation, Inc., 59 Temple Place - Suite 330, Boston, MA
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+ # 02111-1307, USA.
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+
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+ # As a special exception to the GNU General Public License, if you
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+ # distribute this file as part of a program that contains a
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+ # configuration script generated by Autoconf, you may include it under
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+ # the same distribution terms that you use for the rest of that program.
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+
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+ if test $# -eq 0; then
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+ echo 1>&2 "Try \`$0 --help' for more information"
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+ exit 1
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+ fi
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+
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+ run=:
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+
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+ # In the cases where this matters, `missing' is being run in the
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+ # srcdir already.
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+ if test -f configure.ac; then
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+ configure_ac=configure.ac
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+ else
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+ configure_ac=configure.in
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+ fi
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+
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+ case "$1" in
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+ --run)
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+ # Try to run requested program, and just exit if it succeeds.
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+ run=
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+ shift
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+ "$@" && exit 0
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+ ;;
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+ esac
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+
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+ # If it does not exist, or fails to run (possibly an outdated version),
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+ # try to emulate it.
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+ case "$1" in
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+
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+ -h|--h|--he|--hel|--help)
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+ echo "\
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+ $0 [OPTION]... PROGRAM [ARGUMENT]...
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+
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+ Handle \`PROGRAM [ARGUMENT]...' for when PROGRAM is missing, or return an
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+ error status if there is no known handling for PROGRAM.
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+
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+ Options:
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+ -h, --help display this help and exit
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+ -v, --version output version information and exit
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+ --run try to run the given command, and emulate it if it fails
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+
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+ Supported PROGRAM values:
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+ aclocal touch file \`aclocal.m4'
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+ autoconf touch file \`configure'
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+ autoheader touch file \`config.h.in'
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+ automake touch all \`Makefile.in' files
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+ bison create \`y.tab.[ch]', if possible, from existing .[ch]
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+ flex create \`lex.yy.c', if possible, from existing .c
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+ help2man touch the output file
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+ lex create \`lex.yy.c', if possible, from existing .c
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+ makeinfo touch the output file
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+ tar try tar, gnutar, gtar, then tar without non-portable flags
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+ yacc create \`y.tab.[ch]', if possible, from existing .[ch]"
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+ ;;
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+
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+ -v|--v|--ve|--ver|--vers|--versi|--versio|--version)
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+ echo "missing 0.4 - GNU automake"
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+ ;;
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+
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+ -*)
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+ echo 1>&2 "$0: Unknown \`$1' option"
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+ echo 1>&2 "Try \`$0 --help' for more information"
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+ exit 1
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+ ;;
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+
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+ aclocal*)
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+ if test -z "$run" && ($1 --version) > /dev/null 2>&1; then
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+ # We have it, but it failed.
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+ exit 1
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+ fi
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+
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+ echo 1>&2 "\
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+ WARNING: \`$1' is missing on your system. You should only need it if
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+ you modified \`acinclude.m4' or \`${configure_ac}'. You might want
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+ to install the \`Automake' and \`Perl' packages. Grab them from
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+ any GNU archive site."
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+ touch aclocal.m4
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+ ;;
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+
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+ autoconf)
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+ if test -z "$run" && ($1 --version) > /dev/null 2>&1; then
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+ # We have it, but it failed.
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+ exit 1
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+ fi
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+
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+ echo 1>&2 "\
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+ WARNING: \`$1' is missing on your system. You should only need it if
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+ you modified \`${configure_ac}'. You might want to install the
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+ \`Autoconf' and \`GNU m4' packages. Grab them from any GNU
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+ archive site."
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+ touch configure
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+ ;;
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+
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+ autoheader)
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+ if test -z "$run" && ($1 --version) > /dev/null 2>&1; then
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+ # We have it, but it failed.
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+ exit 1
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+ fi
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+
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+ echo 1>&2 "\
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+ WARNING: \`$1' is missing on your system. You should only need it if
126
+ you modified \`acconfig.h' or \`${configure_ac}'. You might want
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+ to install the \`Autoconf' and \`GNU m4' packages. Grab them
128
+ from any GNU archive site."
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+ files=`sed -n 's/^[ ]*A[CM]_CONFIG_HEADER(\([^)]*\)).*/\1/p' ${configure_ac}`
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+ test -z "$files" && files="config.h"
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+ touch_files=
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+ for f in $files; do
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+ case "$f" in
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+ *:*) touch_files="$touch_files "`echo "$f" |
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+ sed -e 's/^[^:]*://' -e 's/:.*//'`;;
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+ *) touch_files="$touch_files $f.in";;
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+ esac
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+ done
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+ touch $touch_files
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+ ;;
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+
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+ automake*)
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+ if test -z "$run" && ($1 --version) > /dev/null 2>&1; then
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+ # We have it, but it failed.
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+ exit 1
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+ fi
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+
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+ echo 1>&2 "\
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+ WARNING: \`$1' is missing on your system. You should only need it if
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+ you modified \`Makefile.am', \`acinclude.m4' or \`${configure_ac}'.
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+ You might want to install the \`Automake' and \`Perl' packages.
152
+ Grab them from any GNU archive site."
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+ find . -type f -name Makefile.am -print |
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+ sed 's/\.am$/.in/' |
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+ while read f; do touch "$f"; done
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+ ;;
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+
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+ autom4te)
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+ if test -z "$run" && ($1 --version) > /dev/null 2>&1; then
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+ # We have it, but it failed.
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+ exit 1
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+ fi
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+
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+ echo 1>&2 "\
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+ WARNING: \`$1' is needed, and you do not seem to have it handy on your
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+ system. You might have modified some files without having the
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+ proper tools for further handling them.
168
+ You can get \`$1' as part of \`Autoconf' from any GNU
169
+ archive site."
170
+
171
+ file=`echo "$*" | sed -n 's/.*--output[ =]*\([^ ]*\).*/\1/p'`
172
+ test -z "$file" && file=`echo "$*" | sed -n 's/.*-o[ ]*\([^ ]*\).*/\1/p'`
173
+ if test -f "$file"; then
174
+ touch $file
175
+ else
176
+ test -z "$file" || exec >$file
177
+ echo "#! /bin/sh"
178
+ echo "# Created by GNU Automake missing as a replacement of"
179
+ echo "# $ $@"
180
+ echo "exit 0"
181
+ chmod +x $file
182
+ exit 1
183
+ fi
184
+ ;;
185
+
186
+ bison|yacc)
187
+ echo 1>&2 "\
188
+ WARNING: \`$1' is missing on your system. You should only need it if
189
+ you modified a \`.y' file. You may need the \`Bison' package
190
+ in order for those modifications to take effect. You can get
191
+ \`Bison' from any GNU archive site."
192
+ rm -f y.tab.c y.tab.h
193
+ if [ $# -ne 1 ]; then
194
+ eval LASTARG="\${$#}"
195
+ case "$LASTARG" in
196
+ *.y)
197
+ SRCFILE=`echo "$LASTARG" | sed 's/y$/c/'`
198
+ if [ -f "$SRCFILE" ]; then
199
+ cp "$SRCFILE" y.tab.c
200
+ fi
201
+ SRCFILE=`echo "$LASTARG" | sed 's/y$/h/'`
202
+ if [ -f "$SRCFILE" ]; then
203
+ cp "$SRCFILE" y.tab.h
204
+ fi
205
+ ;;
206
+ esac
207
+ fi
208
+ if [ ! -f y.tab.h ]; then
209
+ echo >y.tab.h
210
+ fi
211
+ if [ ! -f y.tab.c ]; then
212
+ echo 'main() { return 0; }' >y.tab.c
213
+ fi
214
+ ;;
215
+
216
+ lex|flex)
217
+ echo 1>&2 "\
218
+ WARNING: \`$1' is missing on your system. You should only need it if
219
+ you modified a \`.l' file. You may need the \`Flex' package
220
+ in order for those modifications to take effect. You can get
221
+ \`Flex' from any GNU archive site."
222
+ rm -f lex.yy.c
223
+ if [ $# -ne 1 ]; then
224
+ eval LASTARG="\${$#}"
225
+ case "$LASTARG" in
226
+ *.l)
227
+ SRCFILE=`echo "$LASTARG" | sed 's/l$/c/'`
228
+ if [ -f "$SRCFILE" ]; then
229
+ cp "$SRCFILE" lex.yy.c
230
+ fi
231
+ ;;
232
+ esac
233
+ fi
234
+ if [ ! -f lex.yy.c ]; then
235
+ echo 'main() { return 0; }' >lex.yy.c
236
+ fi
237
+ ;;
238
+
239
+ help2man)
240
+ if test -z "$run" && ($1 --version) > /dev/null 2>&1; then
241
+ # We have it, but it failed.
242
+ exit 1
243
+ fi
244
+
245
+ echo 1>&2 "\
246
+ WARNING: \`$1' is missing on your system. You should only need it if
247
+ you modified a dependency of a manual page. You may need the
248
+ \`Help2man' package in order for those modifications to take
249
+ effect. You can get \`Help2man' from any GNU archive site."
250
+
251
+ file=`echo "$*" | sed -n 's/.*-o \([^ ]*\).*/\1/p'`
252
+ if test -z "$file"; then
253
+ file=`echo "$*" | sed -n 's/.*--output=\([^ ]*\).*/\1/p'`
254
+ fi
255
+ if [ -f "$file" ]; then
256
+ touch $file
257
+ else
258
+ test -z "$file" || exec >$file
259
+ echo ".ab help2man is required to generate this page"
260
+ exit 1
261
+ fi
262
+ ;;
263
+
264
+ makeinfo)
265
+ if test -z "$run" && (makeinfo --version) > /dev/null 2>&1; then
266
+ # We have makeinfo, but it failed.
267
+ exit 1
268
+ fi
269
+
270
+ echo 1>&2 "\
271
+ WARNING: \`$1' is missing on your system. You should only need it if
272
+ you modified a \`.texi' or \`.texinfo' file, or any other file
273
+ indirectly affecting the aspect of the manual. The spurious
274
+ call might also be the consequence of using a buggy \`make' (AIX,
275
+ DU, IRIX). You might want to install the \`Texinfo' package or
276
+ the \`GNU make' package. Grab either from any GNU archive site."
277
+ file=`echo "$*" | sed -n 's/.*-o \([^ ]*\).*/\1/p'`
278
+ if test -z "$file"; then
279
+ file=`echo "$*" | sed 's/.* \([^ ]*\) *$/\1/'`
280
+ file=`sed -n '/^@setfilename/ { s/.* \([^ ]*\) *$/\1/; p; q; }' $file`
281
+ fi
282
+ touch $file
283
+ ;;
284
+
285
+ tar)
286
+ shift
287
+ if test -n "$run"; then
288
+ echo 1>&2 "ERROR: \`tar' requires --run"
289
+ exit 1
290
+ fi
291
+
292
+ # We have already tried tar in the generic part.
293
+ # Look for gnutar/gtar before invocation to avoid ugly error
294
+ # messages.
295
+ if (gnutar --version > /dev/null 2>&1); then
296
+ gnutar "$@" && exit 0
297
+ fi
298
+ if (gtar --version > /dev/null 2>&1); then
299
+ gtar "$@" && exit 0
300
+ fi
301
+ firstarg="$1"
302
+ if shift; then
303
+ case "$firstarg" in
304
+ *o*)
305
+ firstarg=`echo "$firstarg" | sed s/o//`
306
+ tar "$firstarg" "$@" && exit 0
307
+ ;;
308
+ esac
309
+ case "$firstarg" in
310
+ *h*)
311
+ firstarg=`echo "$firstarg" | sed s/h//`
312
+ tar "$firstarg" "$@" && exit 0
313
+ ;;
314
+ esac
315
+ fi
316
+
317
+ echo 1>&2 "\
318
+ WARNING: I can't seem to be able to run \`tar' with the given arguments.
319
+ You may want to install GNU tar or Free paxutils, or check the
320
+ command line arguments."
321
+ exit 1
322
+ ;;
323
+
324
+ *)
325
+ echo 1>&2 "\
326
+ WARNING: \`$1' is needed, and you do not seem to have it handy on your
327
+ system. You might have modified some files without having the
328
+ proper tools for further handling them. Check the \`README' file,
329
+ it often tells you about the needed prerequisites for installing
330
+ this package. You may also peek at any GNU archive site, in case
331
+ some other package would contain this missing \`$1' program."
332
+ exit 1
333
+ ;;
334
+ esac
335
+
336
+ exit 0