complearn 0.6.2

This diff represents the content of publicly available package versions that have been released to one of the supported registries. The information contained in this diff is provided for informational purposes only and reflects changes between package versions as they appear in their respective public registries.
Files changed (104) hide show
  1. data/AUTHORS +13 -0
  2. data/COPYING +340 -0
  3. data/ChangeLog +0 -0
  4. data/INSTALL +231 -0
  5. data/Makefile +352 -0
  6. data/Makefile.am +76 -0
  7. data/Makefile.in +352 -0
  8. data/NEWS +7 -0
  9. data/README +0 -0
  10. data/aclocal.m4 +104 -0
  11. data/bin/Makefile +209 -0
  12. data/bin/Makefile.am +8 -0
  13. data/bin/Makefile.in +209 -0
  14. data/bin/labeltree +68 -0
  15. data/bin/labeltree.in +68 -0
  16. data/bin/makesvm +70 -0
  17. data/bin/makesvm.in +70 -0
  18. data/bin/maketree +98 -0
  19. data/bin/maketree.in +98 -0
  20. data/bin/ncd +43 -0
  21. data/bin/ncd.in +43 -0
  22. data/bin/ncdmatrix +54 -0
  23. data/bin/ncdmatrix.in +54 -0
  24. data/bin/ncdvector +50 -0
  25. data/bin/ncdvector.in +50 -0
  26. data/complearn-0.6.2.gem +0 -0
  27. data/complearn.gemspec +57 -0
  28. data/config.log +597 -0
  29. data/config.status +1082 -0
  30. data/configure +4922 -0
  31. data/configure.ac +91 -0
  32. data/confstat5FpLBf/config.h +65 -0
  33. data/confstat5FpLBf/subs-1.sed +50 -0
  34. data/confstat5FpLBf/subs-2.sed +13 -0
  35. data/confstat5FpLBf/subs.frag +0 -0
  36. data/confstat5FpLBf/subs.sed +59 -0
  37. data/confstat5FpLBf/undefs.sed +24 -0
  38. data/doc/FAQ.txt +67 -0
  39. data/doc/Makefile +286 -0
  40. data/doc/Makefile.am +11 -0
  41. data/doc/Makefile.in +286 -0
  42. data/doc/devguide.txt +15 -0
  43. data/doc/example.complearnrc +14 -0
  44. data/doc/examples.txt +35 -0
  45. data/doc/man/Makefile +255 -0
  46. data/doc/man/Makefile.am +11 -0
  47. data/doc/man/Makefile.in +255 -0
  48. data/doc/man/complearn.5 +91 -0
  49. data/doc/man/labeltree.1 +35 -0
  50. data/doc/man/makesvm.1 +60 -0
  51. data/doc/man/maketree.1 +58 -0
  52. data/doc/man/ncd.1 +51 -0
  53. data/doc/man/ncdmatrix.1 +40 -0
  54. data/doc/man/ncdvector.1 +42 -0
  55. data/doc/readme.txt +101 -0
  56. data/doc/userguide.txt +46 -0
  57. data/examples/genes/blueWhale.txt +1 -0
  58. data/examples/genes/cat.txt +1 -0
  59. data/examples/genes/chimpanzee.txt +1 -0
  60. data/examples/genes/finWhale.txt +1 -0
  61. data/examples/genes/graySeal.txt +1 -0
  62. data/examples/genes/harborSeal.txt +1 -0
  63. data/examples/genes/horse.txt +1 -0
  64. data/examples/genes/human.txt +1 -0
  65. data/examples/genes/mouse.txt +1 -0
  66. data/examples/genes/rat.txt +1 -0
  67. data/ext/Makefile +167 -0
  68. data/ext/Quartet.c +399 -0
  69. data/ext/Quartet.h +62 -0
  70. data/ext/TreeScore.c +244 -0
  71. data/ext/TreeScore.h +3 -0
  72. data/ext/config.h +65 -0
  73. data/ext/config.h.in +64 -0
  74. data/ext/extconf.rb +3 -0
  75. data/ext/lib/CompLearnLib/CLConfig.rb +241 -0
  76. data/ext/lib/CompLearnLib/CompressionObject.rb +59 -0
  77. data/ext/lib/CompLearnLib/CompressionTask.rb +99 -0
  78. data/ext/lib/CompLearnLib/DistMatrix.rb +18 -0
  79. data/ext/lib/CompLearnLib/FoundComp.rb +10 -0
  80. data/ext/lib/CompLearnLib/FoundComp.rb.in +10 -0
  81. data/ext/lib/CompLearnLib/Ncd.rb +248 -0
  82. data/ext/lib/CompLearnLib/RunEnv.rb +150 -0
  83. data/ext/lib/CompLearnLib/Task.rb +39 -0
  84. data/ext/lib/CompLearnLib/TaskMaster.rb +13 -0
  85. data/ext/lib/CompLearnLib/TaskMasterMPI.rb +112 -0
  86. data/ext/lib/CompLearnLib/TaskMasterSingle.rb +39 -0
  87. data/ext/lib/CompLearnLib/Tree.rb +300 -0
  88. data/install-sh +294 -0
  89. data/missing +336 -0
  90. data/mkinstalldirs +111 -0
  91. data/o +24 -0
  92. data/scripts/CompLearn.iss +89 -0
  93. data/scripts/CompLearn.iss.in +89 -0
  94. data/scripts/debian/changelog +6 -0
  95. data/scripts/debian/control +14 -0
  96. data/scripts/makeSetup.sh +23 -0
  97. data/scripts/makeSetup.sh.in +23 -0
  98. data/scripts/makedeb.zsh +46 -0
  99. data/scripts/makedeb.zsh.in +46 -0
  100. data/tests/alltests.rb +2 -0
  101. data/tests/bz2test.rb +516 -0
  102. data/tests/sshagent-test.rb +48 -0
  103. data/tests/tests.rb +275 -0
  104. metadata +164 -0
@@ -0,0 +1,294 @@
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+ #!/bin/sh
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+ #
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+ # install - install a program, script, or datafile
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+ #
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+ # This originates from X11R5 (mit/util/scripts/install.sh), which was
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+ # later released in X11R6 (xc/config/util/install.sh) with the
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+ # following copyright and license.
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+ #
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+ # Copyright (C) 1994 X Consortium
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+ #
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+ # Permission is hereby granted, free of charge, to any person obtaining a copy
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+ # of this software and associated documentation files (the "Software"), to
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+ # deal in the Software without restriction, including without limitation the
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+ # rights to use, copy, modify, merge, publish, distribute, sublicense, and/or
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+ # sell copies of the Software, and to permit persons to whom the Software is
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+ # furnished to do so, subject to the following conditions:
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+ #
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+ # The above copyright notice and this permission notice shall be included in
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+ # all copies or substantial portions of the Software.
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+ #
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+ # THE SOFTWARE IS PROVIDED "AS IS", WITHOUT WARRANTY OF ANY KIND, EXPRESS OR
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+ # IMPLIED, INCLUDING BUT NOT LIMITED TO THE WARRANTIES OF MERCHANTABILITY,
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+ # FITNESS FOR A PARTICULAR PURPOSE AND NONINFRINGEMENT. IN NO EVENT SHALL THE
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+ # X CONSORTIUM BE LIABLE FOR ANY CLAIM, DAMAGES OR OTHER LIABILITY, WHETHER IN
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+ # AN ACTION OF CONTRACT, TORT OR OTHERWISE, ARISING FROM, OUT OF OR IN CONNEC-
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+ # TION WITH THE SOFTWARE OR THE USE OR OTHER DEALINGS IN THE SOFTWARE.
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+ #
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+ # Except as contained in this notice, the name of the X Consortium shall not
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+ # be used in advertising or otherwise to promote the sale, use or other deal-
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+ # ings in this Software without prior written authorization from the X Consor-
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+ # tium.
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+ #
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+ #
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+ # FSF changes to this file are in the public domain.
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+ #
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+ # Calling this script install-sh is preferred over install.sh, to prevent
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+ # `make' implicit rules from creating a file called install from it
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+ # when there is no Makefile.
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+ #
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+ # This script is compatible with the BSD install script, but was written
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+ # from scratch. It can only install one file at a time, a restriction
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+ # shared with many OS's install programs.
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+
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+
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+ # set DOITPROG to echo to test this script
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+
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+ # Don't use :- since 4.3BSD and earlier shells don't like it.
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+ doit="${DOITPROG-}"
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+
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+
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+ # put in absolute paths if you don't have them in your path; or use env. vars.
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+
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+ mvprog="${MVPROG-mv}"
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+ cpprog="${CPPROG-cp}"
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+ chmodprog="${CHMODPROG-chmod}"
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+ chownprog="${CHOWNPROG-chown}"
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+ chgrpprog="${CHGRPPROG-chgrp}"
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+ stripprog="${STRIPPROG-strip}"
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+ rmprog="${RMPROG-rm}"
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+ mkdirprog="${MKDIRPROG-mkdir}"
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+
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+ transformbasename=""
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+ transform_arg=""
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+ instcmd="$mvprog"
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+ chmodcmd="$chmodprog 0755"
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+ chowncmd=""
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+ chgrpcmd=""
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+ stripcmd=""
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+ rmcmd="$rmprog -f"
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+ mvcmd="$mvprog"
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+ src=""
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+ dst=""
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+ dir_arg=""
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+
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+ while [ x"$1" != x ]; do
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+ case $1 in
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+ -c) instcmd=$cpprog
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+ shift
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+ continue;;
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+
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+ -d) dir_arg=true
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+ shift
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+ continue;;
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+
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+ -m) chmodcmd="$chmodprog $2"
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+ shift
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+ shift
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+ continue;;
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+
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+ -o) chowncmd="$chownprog $2"
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+ shift
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+ shift
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+ continue;;
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+
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+ -g) chgrpcmd="$chgrpprog $2"
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+ shift
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+ shift
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+ continue;;
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+
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+ -s) stripcmd=$stripprog
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+ shift
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+ continue;;
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+
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+ -t=*) transformarg=`echo $1 | sed 's/-t=//'`
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+ shift
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+ continue;;
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+
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+ -b=*) transformbasename=`echo $1 | sed 's/-b=//'`
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+ shift
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+ continue;;
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+
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+ *) if [ x"$src" = x ]
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+ then
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+ src=$1
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+ else
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+ # this colon is to work around a 386BSD /bin/sh bug
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+ :
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+ dst=$1
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+ fi
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+ shift
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+ continue;;
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+ esac
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+ done
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+
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+ if [ x"$src" = x ]
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+ then
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+ echo "$0: no input file specified" >&2
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+ exit 1
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+ else
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+ :
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+ fi
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+
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+ if [ x"$dir_arg" != x ]; then
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+ dst=$src
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+ src=""
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+
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+ if [ -d "$dst" ]; then
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+ instcmd=:
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+ chmodcmd=""
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+ else
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+ instcmd=$mkdirprog
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+ fi
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+ else
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+
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+ # Waiting for this to be detected by the "$instcmd $src $dsttmp" command
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+ # might cause directories to be created, which would be especially bad
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+ # if $src (and thus $dsttmp) contains '*'.
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+
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+ if [ -f "$src" ] || [ -d "$src" ]
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+ then
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+ :
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+ else
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+ echo "$0: $src does not exist" >&2
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+ exit 1
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+ fi
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+
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+ if [ x"$dst" = x ]
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+ then
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+ echo "$0: no destination specified" >&2
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+ exit 1
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+ else
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+ :
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+ fi
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+
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+ # If destination is a directory, append the input filename; if your system
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+ # does not like double slashes in filenames, you may need to add some logic
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+
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+ if [ -d "$dst" ]
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+ then
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+ dst=$dst/`basename "$src"`
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+ else
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+ :
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+ fi
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+ fi
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+
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+ ## this sed command emulates the dirname command
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+ dstdir=`echo "$dst" | sed -e 's,[^/]*$,,;s,/$,,;s,^$,.,'`
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+
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+ # Make sure that the destination directory exists.
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+ # this part is taken from Noah Friedman's mkinstalldirs script
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+
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+ # Skip lots of stat calls in the usual case.
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+ if [ ! -d "$dstdir" ]; then
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+ defaultIFS='
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+ '
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+ IFS="${IFS-$defaultIFS}"
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+
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+ oIFS=$IFS
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+ # Some sh's can't handle IFS=/ for some reason.
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+ IFS='%'
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+ set - `echo "$dstdir" | sed -e 's@/@%@g' -e 's@^%@/@'`
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+ IFS=$oIFS
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+
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+ pathcomp=''
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+
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+ while [ $# -ne 0 ] ; do
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+ pathcomp=$pathcomp$1
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+ shift
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+
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+ if [ ! -d "$pathcomp" ] ;
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+ then
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+ $mkdirprog "$pathcomp"
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+ else
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+ :
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+ fi
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+
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+ pathcomp=$pathcomp/
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+ done
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+ fi
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+
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+ if [ x"$dir_arg" != x ]
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+ then
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+ $doit $instcmd "$dst" &&
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+
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+ if [ x"$chowncmd" != x ]; then $doit $chowncmd "$dst"; else : ; fi &&
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+ if [ x"$chgrpcmd" != x ]; then $doit $chgrpcmd "$dst"; else : ; fi &&
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+ if [ x"$stripcmd" != x ]; then $doit $stripcmd "$dst"; else : ; fi &&
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+ if [ x"$chmodcmd" != x ]; then $doit $chmodcmd "$dst"; else : ; fi
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+ else
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+
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+ # If we're going to rename the final executable, determine the name now.
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+
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+ if [ x"$transformarg" = x ]
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+ then
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+ dstfile=`basename "$dst"`
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+ else
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+ dstfile=`basename "$dst" $transformbasename |
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+ sed $transformarg`$transformbasename
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+ fi
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+
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+ # don't allow the sed command to completely eliminate the filename
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+
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+ if [ x"$dstfile" = x ]
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+ then
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+ dstfile=`basename "$dst"`
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+ else
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+ :
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+ fi
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+
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+ # Make a couple of temp file names in the proper directory.
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+
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+ dsttmp=$dstdir/_inst.$$_
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+ rmtmp=$dstdir/_rm.$$_
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+
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+ # Trap to clean up temp files at exit.
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+
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+ trap 'status=$?; rm -f "$dsttmp" "$rmtmp" && exit $status' 0
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+ trap '(exit $?); exit' 1 2 13 15
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+
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+ # Move or copy the file name to the temp name
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+
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+ $doit $instcmd "$src" "$dsttmp" &&
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+
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+ # and set any options; do chmod last to preserve setuid bits
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+
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+ # If any of these fail, we abort the whole thing. If we want to
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+ # ignore errors from any of these, just make sure not to ignore
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+ # errors from the above "$doit $instcmd $src $dsttmp" command.
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+
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+ if [ x"$chowncmd" != x ]; then $doit $chowncmd "$dsttmp"; else :;fi &&
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+ if [ x"$chgrpcmd" != x ]; then $doit $chgrpcmd "$dsttmp"; else :;fi &&
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+ if [ x"$stripcmd" != x ]; then $doit $stripcmd "$dsttmp"; else :;fi &&
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+ if [ x"$chmodcmd" != x ]; then $doit $chmodcmd "$dsttmp"; else :;fi &&
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+
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+ # Now remove or move aside any old file at destination location. We try this
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+ # two ways since rm can't unlink itself on some systems and the destination
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+ # file might be busy for other reasons. In this case, the final cleanup
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+ # might fail but the new file should still install successfully.
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+
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+ {
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+ if [ -f "$dstdir/$dstfile" ]
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+ then
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+ $doit $rmcmd -f "$dstdir/$dstfile" 2>/dev/null ||
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+ $doit $mvcmd -f "$dstdir/$dstfile" "$rmtmp" 2>/dev/null ||
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+ {
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+ echo "$0: cannot unlink or rename $dstdir/$dstfile" >&2
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+ (exit 1); exit
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+ }
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+ else
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+ :
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+ fi
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+ } &&
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+
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+ # Now rename the file to the real destination.
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+
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+ $doit $mvcmd "$dsttmp" "$dstdir/$dstfile"
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+
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+ fi &&
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+
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+ # The final little trick to "correctly" pass the exit status to the exit trap.
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+
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+ {
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+ (exit 0); exit
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+ }
data/missing ADDED
@@ -0,0 +1,336 @@
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+ #! /bin/sh
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+ # Common stub for a few missing GNU programs while installing.
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+ # Copyright (C) 1996, 1997, 1999, 2000, 2002, 2003 Free Software Foundation, Inc.
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+ # Originally by Fran,cois Pinard <pinard@iro.umontreal.ca>, 1996.
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+
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+ # This program is free software; you can redistribute it and/or modify
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+ # it under the terms of the GNU General Public License as published by
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+ # the Free Software Foundation; either version 2, or (at your option)
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+ # any later version.
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+
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+ # This program is distributed in the hope that it will be useful,
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+ # but WITHOUT ANY WARRANTY; without even the implied warranty of
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+ # MERCHANTABILITY or FITNESS FOR A PARTICULAR PURPOSE. See the
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+ # GNU General Public License for more details.
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+
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+ # You should have received a copy of the GNU General Public License
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+ # along with this program; if not, write to the Free Software
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+ # Foundation, Inc., 59 Temple Place - Suite 330, Boston, MA
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+ # 02111-1307, USA.
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+
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+ # As a special exception to the GNU General Public License, if you
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+ # distribute this file as part of a program that contains a
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+ # configuration script generated by Autoconf, you may include it under
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+ # the same distribution terms that you use for the rest of that program.
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+
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+ if test $# -eq 0; then
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+ echo 1>&2 "Try \`$0 --help' for more information"
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+ exit 1
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+ fi
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+
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+ run=:
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+
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+ # In the cases where this matters, `missing' is being run in the
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+ # srcdir already.
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+ if test -f configure.ac; then
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+ configure_ac=configure.ac
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+ else
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+ configure_ac=configure.in
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+ fi
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+
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+ case "$1" in
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+ --run)
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+ # Try to run requested program, and just exit if it succeeds.
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+ run=
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+ shift
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+ "$@" && exit 0
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+ ;;
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+ esac
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+
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+ # If it does not exist, or fails to run (possibly an outdated version),
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+ # try to emulate it.
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+ case "$1" in
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+
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+ -h|--h|--he|--hel|--help)
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+ echo "\
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+ $0 [OPTION]... PROGRAM [ARGUMENT]...
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+
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+ Handle \`PROGRAM [ARGUMENT]...' for when PROGRAM is missing, or return an
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+ error status if there is no known handling for PROGRAM.
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+
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+ Options:
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+ -h, --help display this help and exit
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+ -v, --version output version information and exit
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+ --run try to run the given command, and emulate it if it fails
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+
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+ Supported PROGRAM values:
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+ aclocal touch file \`aclocal.m4'
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+ autoconf touch file \`configure'
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+ autoheader touch file \`config.h.in'
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+ automake touch all \`Makefile.in' files
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+ bison create \`y.tab.[ch]', if possible, from existing .[ch]
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+ flex create \`lex.yy.c', if possible, from existing .c
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+ help2man touch the output file
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+ lex create \`lex.yy.c', if possible, from existing .c
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+ makeinfo touch the output file
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+ tar try tar, gnutar, gtar, then tar without non-portable flags
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+ yacc create \`y.tab.[ch]', if possible, from existing .[ch]"
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+ ;;
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+
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+ -v|--v|--ve|--ver|--vers|--versi|--versio|--version)
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+ echo "missing 0.4 - GNU automake"
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+ ;;
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+
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+ -*)
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+ echo 1>&2 "$0: Unknown \`$1' option"
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+ echo 1>&2 "Try \`$0 --help' for more information"
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+ exit 1
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+ ;;
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+
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+ aclocal*)
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+ if test -z "$run" && ($1 --version) > /dev/null 2>&1; then
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+ # We have it, but it failed.
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+ exit 1
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+ fi
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+
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+ echo 1>&2 "\
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+ WARNING: \`$1' is missing on your system. You should only need it if
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+ you modified \`acinclude.m4' or \`${configure_ac}'. You might want
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+ to install the \`Automake' and \`Perl' packages. Grab them from
100
+ any GNU archive site."
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+ touch aclocal.m4
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+ ;;
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+
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+ autoconf)
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+ if test -z "$run" && ($1 --version) > /dev/null 2>&1; then
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+ # We have it, but it failed.
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+ exit 1
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+ fi
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+
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+ echo 1>&2 "\
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+ WARNING: \`$1' is missing on your system. You should only need it if
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+ you modified \`${configure_ac}'. You might want to install the
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+ \`Autoconf' and \`GNU m4' packages. Grab them from any GNU
114
+ archive site."
115
+ touch configure
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+ ;;
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+
118
+ autoheader)
119
+ if test -z "$run" && ($1 --version) > /dev/null 2>&1; then
120
+ # We have it, but it failed.
121
+ exit 1
122
+ fi
123
+
124
+ echo 1>&2 "\
125
+ WARNING: \`$1' is missing on your system. You should only need it if
126
+ you modified \`acconfig.h' or \`${configure_ac}'. You might want
127
+ to install the \`Autoconf' and \`GNU m4' packages. Grab them
128
+ from any GNU archive site."
129
+ files=`sed -n 's/^[ ]*A[CM]_CONFIG_HEADER(\([^)]*\)).*/\1/p' ${configure_ac}`
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+ test -z "$files" && files="config.h"
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+ touch_files=
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+ for f in $files; do
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+ case "$f" in
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+ *:*) touch_files="$touch_files "`echo "$f" |
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+ sed -e 's/^[^:]*://' -e 's/:.*//'`;;
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+ *) touch_files="$touch_files $f.in";;
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+ esac
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+ done
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+ touch $touch_files
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+ ;;
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+
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+ automake*)
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+ if test -z "$run" && ($1 --version) > /dev/null 2>&1; then
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+ # We have it, but it failed.
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+ exit 1
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+ fi
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+
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+ echo 1>&2 "\
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+ WARNING: \`$1' is missing on your system. You should only need it if
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+ you modified \`Makefile.am', \`acinclude.m4' or \`${configure_ac}'.
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+ You might want to install the \`Automake' and \`Perl' packages.
152
+ Grab them from any GNU archive site."
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+ find . -type f -name Makefile.am -print |
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+ sed 's/\.am$/.in/' |
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+ while read f; do touch "$f"; done
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+ ;;
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+
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+ autom4te)
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+ if test -z "$run" && ($1 --version) > /dev/null 2>&1; then
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+ # We have it, but it failed.
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+ exit 1
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+ fi
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+
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+ echo 1>&2 "\
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+ WARNING: \`$1' is needed, and you do not seem to have it handy on your
166
+ system. You might have modified some files without having the
167
+ proper tools for further handling them.
168
+ You can get \`$1' as part of \`Autoconf' from any GNU
169
+ archive site."
170
+
171
+ file=`echo "$*" | sed -n 's/.*--output[ =]*\([^ ]*\).*/\1/p'`
172
+ test -z "$file" && file=`echo "$*" | sed -n 's/.*-o[ ]*\([^ ]*\).*/\1/p'`
173
+ if test -f "$file"; then
174
+ touch $file
175
+ else
176
+ test -z "$file" || exec >$file
177
+ echo "#! /bin/sh"
178
+ echo "# Created by GNU Automake missing as a replacement of"
179
+ echo "# $ $@"
180
+ echo "exit 0"
181
+ chmod +x $file
182
+ exit 1
183
+ fi
184
+ ;;
185
+
186
+ bison|yacc)
187
+ echo 1>&2 "\
188
+ WARNING: \`$1' is missing on your system. You should only need it if
189
+ you modified a \`.y' file. You may need the \`Bison' package
190
+ in order for those modifications to take effect. You can get
191
+ \`Bison' from any GNU archive site."
192
+ rm -f y.tab.c y.tab.h
193
+ if [ $# -ne 1 ]; then
194
+ eval LASTARG="\${$#}"
195
+ case "$LASTARG" in
196
+ *.y)
197
+ SRCFILE=`echo "$LASTARG" | sed 's/y$/c/'`
198
+ if [ -f "$SRCFILE" ]; then
199
+ cp "$SRCFILE" y.tab.c
200
+ fi
201
+ SRCFILE=`echo "$LASTARG" | sed 's/y$/h/'`
202
+ if [ -f "$SRCFILE" ]; then
203
+ cp "$SRCFILE" y.tab.h
204
+ fi
205
+ ;;
206
+ esac
207
+ fi
208
+ if [ ! -f y.tab.h ]; then
209
+ echo >y.tab.h
210
+ fi
211
+ if [ ! -f y.tab.c ]; then
212
+ echo 'main() { return 0; }' >y.tab.c
213
+ fi
214
+ ;;
215
+
216
+ lex|flex)
217
+ echo 1>&2 "\
218
+ WARNING: \`$1' is missing on your system. You should only need it if
219
+ you modified a \`.l' file. You may need the \`Flex' package
220
+ in order for those modifications to take effect. You can get
221
+ \`Flex' from any GNU archive site."
222
+ rm -f lex.yy.c
223
+ if [ $# -ne 1 ]; then
224
+ eval LASTARG="\${$#}"
225
+ case "$LASTARG" in
226
+ *.l)
227
+ SRCFILE=`echo "$LASTARG" | sed 's/l$/c/'`
228
+ if [ -f "$SRCFILE" ]; then
229
+ cp "$SRCFILE" lex.yy.c
230
+ fi
231
+ ;;
232
+ esac
233
+ fi
234
+ if [ ! -f lex.yy.c ]; then
235
+ echo 'main() { return 0; }' >lex.yy.c
236
+ fi
237
+ ;;
238
+
239
+ help2man)
240
+ if test -z "$run" && ($1 --version) > /dev/null 2>&1; then
241
+ # We have it, but it failed.
242
+ exit 1
243
+ fi
244
+
245
+ echo 1>&2 "\
246
+ WARNING: \`$1' is missing on your system. You should only need it if
247
+ you modified a dependency of a manual page. You may need the
248
+ \`Help2man' package in order for those modifications to take
249
+ effect. You can get \`Help2man' from any GNU archive site."
250
+
251
+ file=`echo "$*" | sed -n 's/.*-o \([^ ]*\).*/\1/p'`
252
+ if test -z "$file"; then
253
+ file=`echo "$*" | sed -n 's/.*--output=\([^ ]*\).*/\1/p'`
254
+ fi
255
+ if [ -f "$file" ]; then
256
+ touch $file
257
+ else
258
+ test -z "$file" || exec >$file
259
+ echo ".ab help2man is required to generate this page"
260
+ exit 1
261
+ fi
262
+ ;;
263
+
264
+ makeinfo)
265
+ if test -z "$run" && (makeinfo --version) > /dev/null 2>&1; then
266
+ # We have makeinfo, but it failed.
267
+ exit 1
268
+ fi
269
+
270
+ echo 1>&2 "\
271
+ WARNING: \`$1' is missing on your system. You should only need it if
272
+ you modified a \`.texi' or \`.texinfo' file, or any other file
273
+ indirectly affecting the aspect of the manual. The spurious
274
+ call might also be the consequence of using a buggy \`make' (AIX,
275
+ DU, IRIX). You might want to install the \`Texinfo' package or
276
+ the \`GNU make' package. Grab either from any GNU archive site."
277
+ file=`echo "$*" | sed -n 's/.*-o \([^ ]*\).*/\1/p'`
278
+ if test -z "$file"; then
279
+ file=`echo "$*" | sed 's/.* \([^ ]*\) *$/\1/'`
280
+ file=`sed -n '/^@setfilename/ { s/.* \([^ ]*\) *$/\1/; p; q; }' $file`
281
+ fi
282
+ touch $file
283
+ ;;
284
+
285
+ tar)
286
+ shift
287
+ if test -n "$run"; then
288
+ echo 1>&2 "ERROR: \`tar' requires --run"
289
+ exit 1
290
+ fi
291
+
292
+ # We have already tried tar in the generic part.
293
+ # Look for gnutar/gtar before invocation to avoid ugly error
294
+ # messages.
295
+ if (gnutar --version > /dev/null 2>&1); then
296
+ gnutar "$@" && exit 0
297
+ fi
298
+ if (gtar --version > /dev/null 2>&1); then
299
+ gtar "$@" && exit 0
300
+ fi
301
+ firstarg="$1"
302
+ if shift; then
303
+ case "$firstarg" in
304
+ *o*)
305
+ firstarg=`echo "$firstarg" | sed s/o//`
306
+ tar "$firstarg" "$@" && exit 0
307
+ ;;
308
+ esac
309
+ case "$firstarg" in
310
+ *h*)
311
+ firstarg=`echo "$firstarg" | sed s/h//`
312
+ tar "$firstarg" "$@" && exit 0
313
+ ;;
314
+ esac
315
+ fi
316
+
317
+ echo 1>&2 "\
318
+ WARNING: I can't seem to be able to run \`tar' with the given arguments.
319
+ You may want to install GNU tar or Free paxutils, or check the
320
+ command line arguments."
321
+ exit 1
322
+ ;;
323
+
324
+ *)
325
+ echo 1>&2 "\
326
+ WARNING: \`$1' is needed, and you do not seem to have it handy on your
327
+ system. You might have modified some files without having the
328
+ proper tools for further handling them. Check the \`README' file,
329
+ it often tells you about the needed prerequisites for installing
330
+ this package. You may also peek at any GNU archive site, in case
331
+ some other package would contain this missing \`$1' program."
332
+ exit 1
333
+ ;;
334
+ esac
335
+
336
+ exit 0