commonmeta-ruby 3.3.15 → 3.3.17
This diff represents the content of publicly available package versions that have been released to one of the supported registries. The information contained in this diff is provided for informational purposes only and reflects changes between package versions as they appear in their respective public registries.
- checksums.yaml +4 -4
- data/Gemfile.lock +1 -1
- data/lib/commonmeta/readers/json_feed_reader.rb +8 -8
- data/lib/commonmeta/utils.rb +14 -0
- data/lib/commonmeta/version.rb +1 -1
- data/spec/cli_spec.rb +2 -2
- data/spec/fixtures/vcr_cassettes/Commonmeta_CLI/json_feed/json_feed_by_blog.yml +189 -1704
- data/spec/fixtures/vcr_cassettes/Commonmeta_CLI/json_feed/json_feed_unregistered.yml +54 -1969
- data/spec/fixtures/vcr_cassettes/Commonmeta_Metadata/get_json_feed/by_blog_id.yml +210 -518
- data/spec/fixtures/vcr_cassettes/Commonmeta_Metadata/get_json_feed/not_indexed_posts.yml +6 -1450
- data/spec/fixtures/vcr_cassettes/Commonmeta_Metadata/get_json_feed/unregistered_posts.yml +54 -8
- data/spec/fixtures/vcr_cassettes/Commonmeta_Metadata/get_json_feed_item_metadata/blog_post_with_non-url_id.yml +18 -88
- data/spec/fixtures/vcr_cassettes/Commonmeta_Metadata/get_json_feed_item_metadata/blogger_post.yml +11 -50
- data/spec/fixtures/vcr_cassettes/Commonmeta_Metadata/get_json_feed_item_metadata/ghost_post_with_author_name_suffix.yml +64 -173
- data/spec/fixtures/vcr_cassettes/Commonmeta_Metadata/get_json_feed_item_metadata/ghost_post_with_doi.yml +13 -75
- data/spec/fixtures/vcr_cassettes/Commonmeta_Metadata/get_json_feed_item_metadata/ghost_post_with_institutional_author.yml +15 -11
- data/spec/fixtures/vcr_cassettes/Commonmeta_Metadata/get_json_feed_item_metadata/ghost_post_with_organizational_author.yml +15 -46
- data/spec/fixtures/vcr_cassettes/Commonmeta_Metadata/get_json_feed_item_metadata/ghost_post_without_doi.yml +17 -155
- data/spec/fixtures/vcr_cassettes/Commonmeta_Metadata/get_json_feed_item_metadata/jekyll_post.yml +14 -45
- data/spec/fixtures/vcr_cassettes/Commonmeta_Metadata/get_json_feed_item_metadata/jekyll_post_with_anonymous_author.yml +13 -16
- data/spec/fixtures/vcr_cassettes/Commonmeta_Metadata/get_json_feed_item_metadata/substack_post_with_broken_reference.yml +938 -1865
- data/spec/fixtures/vcr_cassettes/Commonmeta_Metadata/get_json_feed_item_metadata/syldavia_gazette_post_with_references.yml +128 -267
- data/spec/fixtures/vcr_cassettes/Commonmeta_Metadata/get_json_feed_item_metadata/upstream_post_with_references.yml +570 -1279
- data/spec/fixtures/vcr_cassettes/Commonmeta_Metadata/get_json_feed_item_metadata/wordpress_post.yml +12 -119
- data/spec/fixtures/vcr_cassettes/Commonmeta_Metadata/get_json_feed_item_metadata/wordpress_post_with_many_references.yml +4095 -5759
- data/spec/fixtures/vcr_cassettes/Commonmeta_Metadata/get_json_feed_item_metadata/wordpress_post_with_references.yml +24 -220
- data/spec/fixtures/vcr_cassettes/Commonmeta_Metadata/get_json_feed_item_metadata/wordpress_post_with_tracking_code_on_url.yml +13 -12
- data/spec/fixtures/vcr_cassettes/Commonmeta_Metadata/write_metadata_as_crossref/json_feed_item_from_rogue_scholar_with_anonymous_author.yml +13 -16
- data/spec/fixtures/vcr_cassettes/Commonmeta_Metadata/write_metadata_as_crossref/json_feed_item_from_rogue_scholar_with_doi.yml +12 -119
- data/spec/fixtures/vcr_cassettes/Commonmeta_Metadata/write_metadata_as_crossref/json_feed_item_from_rogue_scholar_with_organizational_author.yml +15 -46
- data/spec/fixtures/vcr_cassettes/Commonmeta_Metadata/write_metadata_as_crossref/json_feed_item_from_upstream_blog.yml +13 -201
- data/spec/fixtures/vcr_cassettes/Commonmeta_Metadata/write_metadata_as_crossref/json_feed_item_with_references.yml +104 -813
- data/spec/readers/json_feed_reader_spec.rb +22 -24
- data/spec/utils_spec.rb +40 -0
- data/spec/writers/crossref_xml_writer_spec.rb +4 -4
- metadata +2 -5
- data/spec/fixtures/vcr_cassettes/Commonmeta_CLI/json_feed/blog_post.yml +0 -360
- data/spec/fixtures/vcr_cassettes/Commonmeta_CLI/json_feed/blog_post_uuid.yml +0 -980
- data/spec/fixtures/vcr_cassettes/Commonmeta_CLI/json_feed_unregistered/blog_post_uuid.yml +0 -49
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Scholar full-text search improvements\",\"summary\":\"Two weeks ago I added
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a first version of full-text search to the Rogue Scholar blog archive. This
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was a good start, as blogs typically only have the timeline, tags, and metadata
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like titles and authors to help readers find relevant content. Today I launched
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an improved version of full-text search with these improvements: Sorting of
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search results by relevanceSupport for fuzzy search or approximate string
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matchingAdded the backend for an updated search interface supporting faceted
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search and/or...\",\"published_at\":1688994653,\"updated_at\":1689001959,\"indexed_at\":1689007007,\"authors\":[{\"url\":\"https://orcid.org/0000-0003-1419-2405\",\"name\":\"Martin
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Fenner\"}],\"image\":\"https://images.unsplash.com/photo-1472512946974-cc09a294e210?crop=entropy&cs=tinysrgb&fit=max&fm=jpg&ixid=M3wxMTc3M3wwfDF8c2VhcmNofDI3fHxzZWFyY2h8ZW58MHx8fHwxNjg4OTkyNDk1fDA&ixlib=rb-4.0.3&q=80&w=2000\",\"tags\":[\"News\"],\"language\":\"en\",\"reference\":[{\"doi\":\"https://doi.org/10.53731/80awr-zcc48\",\"key\":\"ref1\"},{\"doi\":\"https://doi.org/10.1136/bmj.c181\",\"key\":\"ref2\"}],\"blog_id\":\"f0m0e38\",\"blog_name\":\"Front
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the OA.Report for libraries pilot to simplify compliance checking for your
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institutional & funder’s OA policies.\",\"summary\":\"Today, we’re happy to
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announce that you can join the OA.Report for libraries pilot! If you’re interested
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in joining: read on and get in touch!Get in touch\U0001F4A1About OA.ReportOA.Report
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is an open-source tool that identifies research outputs organizations have
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supported, analyzes their openness (including OA policy compliance), and then
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streamlines taking action to make results more open.Getting an OA.Report takes
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just seconds!OA.Report has been in use at major foundations for...\",\"published_at\":1688994400,\"updated_at\":1688994400,\"indexed_at\":0,\"authors\":[{\"url\":null,\"name\":\"OA.Works\"}],\"image\":\"https://blog.oa.works/content/images/2023/07/OA.Report-for-libraries-pilot.png\",\"tags\":[\"OA.Report\"],\"language\":\"en\",\"reference\":[],\"blog_id\":\"h7bpg11\",\"blog_name\":\"OA.Works
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Blog\",\"blog\":{\"id\":\"h7bpg11\",\"title\":\"OA.Works Blog\",\"description\":\"OA.Works
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Blog\",\"language\":\"en\",\"favicon\":\"https://blog.oa.works/favicon.png\",\"feed_url\":\"https://blog.oa.works/rss/\",\"home_page_url\":\"https://blog.oa.works/\",\"user_id\":\"8498eaf6-8c58-4b58-bc15-27eda292b1aa\",\"created_at\":\"2023-05-31T14:11:14+00:00\",\"indexed_at\":\"2023-01-04\",\"feed_format\":\"application/rss+xml\",\"license\":\"https://creativecommons.org/licenses/by/4.0/legalcode\",\"generator\":\"Ghost
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Assembly #11\",\"summary\":\"On June 28th, we assembled our supporting community
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to decide next steps, together (see our original agenda). In this post, we
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report some key points for those who were unable to attend.Business developmentThe
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business is progressing steadily, but our revenue is not growing fast enough
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to cover costs as they are. We had a great quarter, where we covered around
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44% of our expenses with our own income. This continues the upward trend as
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you can see specified in the slides below.Slides capturing...\",\"published_at\":1688986812,\"updated_at\":1688986812,\"indexed_at\":0,\"authors\":[{\"url\":null,\"name\":\"Chris
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Hartgerink\"}],\"image\":\"https://images.unsplash.com/photo-1688841903329-62edd2ea6cb1?crop=entropy&cs=tinysrgb&fit=max&fm=jpg&ixid=M3wxMTc3M3wwfDF8YWxsfDN8fHx8fHwyfHwxNjg4OTcwNzk5fA&ixlib=rb-4.0.3&q=80&w=2000\",\"tags\":[],\"language\":\"en\",\"reference\":[],\"blog_id\":\"h49ct36\",\"blog_name\":\"Liberate
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Science\",\"blog\":{\"id\":\"h49ct36\",\"title\":\"Liberate Science\",\"description\":\"Research
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as a commons\",\"language\":\"en\",\"favicon\":\"https://libscie.org/favicon.png\",\"feed_url\":\"https://libscie.org/rss/\",\"home_page_url\":\"https://libscie.org/\",\"user_id\":\"8498eaf6-8c58-4b58-bc15-27eda292b1aa\",\"created_at\":\"2023-05-31T14:08:03+00:00\",\"indexed_at\":\"2023-01-04\",\"feed_format\":\"application/rss+xml\",\"license\":\"https://creativecommons.org/licenses/by/4.0/legalcode\",\"generator\":\"Ghost
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5.49\",\"category\":\"Social Sciences\",\"prefix\":\"10.59350\",\"modified_at\":\"2023-07-04T06:30:20+00:00\",\"version\":\"https://jsonfeed.org/version/1.1\",\"backlog\":true,\"current_feed_url\":null,\"expired\":null}},{\"id\":\"e58803df-87a2-4e85-95de-c2b4a35d6c9a\",\"doi\":null,\"url\":\"https://blog.oa.works/oa-report-now-freely-available-for-hundreds-of-research-funders-to-analyze-and-increase-their-openness\",\"title\":\"OA.Report
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now free for thousands of funders to analyze and increase their impact using
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open research\",\"summary\":\"Today, we’re releasing free public OA.Reports
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for thousands of major research funders to help discover publications they’ve
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funded, understand how open their research is, and increase the impact of
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their investments. This release is an important milestone for OA.Report, which
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was developed in partnership with the Gates Foundation and is currently in
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use at the Robert Wood Johnson Foundation, Wellcome, the Michael J. Fox Foundation,
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and other major foundations.Find your...\",\"published_at\":1688994571,\"updated_at\":1688994571,\"indexed_at\":0,\"authors\":[{\"url\":null,\"name\":\"OA.Works\"}],\"image\":\"https://blog.oa.works/content/images/2023/07/oareport-short-optim-looping.gif\",\"tags\":[\"OA.Report\"],\"language\":\"en\",\"reference\":[],\"blog_id\":\"h7bpg11\",\"blog_name\":\"OA.Works
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to start writing here at Quintessence of Dust, after another long hiatus.
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Here are some of my reasons.1. I like to write, and I have things to say,
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to say, and I self-identify as an author. For eight years, I have co-organized
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and taught in the <a href=\"https://meetings.cshl.edu/courses.aspx?course=C-WRITE&year=23\"
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target=\"_blank\">Scientific Writing Retreat at Cold Spring Harbor Laboratory</a>.
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I''m a writer and I need to write, if only for myself.</div><div><br /></div><div>2.
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I have an idea for a book, along with some introductory work (but no sample
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chapters yet) and writing here will help me develop those thoughts. The idea
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is over twelve years old and has never faded away, which I take to mean that
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I need to get it out of my system somehow.</div><div><br /></div><div>3. I
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have other ideas kicking around in my head and most of them are worth writing
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about. I have one new intellectual passion that is totally worth writing about:
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<a href=\"https://skyislandalliance.org/the-sky-islands/\" target=\"_blank\">the
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Sky Islands</a> that nearly surround us here in Tucson.</div><div><br
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/></div><div>4. I have an exciting new job with great new people at <a href=\"https://plos.org/\"
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target=\"_blank\">an organization</a> that''s all in for <a href=\"https://plos.org/open-science/\"
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target=\"_blank\">open science</a>. I recently turned over the tens digit
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on my age-o-meter. My kids will very soon be all out of college. (One is about
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to start a postdoc!) All of this led, predictably, to a spasm of reflection
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on projects and vision. One clear result is that I''m feeling more inspired.<span><a
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name=''more''></a></span></div><div><br /></div><div>5. The demise of Twitter
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has led to a lot of <a href=\"https://www.theatlantic.com/technology/archive/2022/11/twitter-facebook-social-media-decline/672074/\"
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I left Facebook two years ago and all but left Twitter two months ago. I''m
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on a <a href=\"https://fediscience.org/explore\" target=\"_blank\">good
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server at Mastodon</a> and I like it; maybe microblogging there can satisfy
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my desire for conversation and connection. But <a href=\"https://www.theverge.com/23513418/bring-back-personal-blogging\"
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target=\"_blank\">this recent piece</a> at <i>The Verge</i> by <a href=\"https://moniquejudge.com/\"
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target=\"_blank\">Monique Judge</a> convinced me that blogging could (again)
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have a place in the future.</div><div><br /><div>Here''s her summary, emphasis
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mine:</div><div><blockquote>At the end of the day, we don’t know what is going
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to happen next with Twitter or any of these platforms. We don’t know what
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changes <a href=\"https://www.techtarget.com/whatis/definition/Web-30\" target=\"_blank\">Web
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3.0</a> is going to bring to the internet. We do know that <b>we will all
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still be here, wanting to share our thoughts, talk about anything and everything,
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and commune with our people</b>. Personal blogging is the simplest and fastest
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way to do all of that. </blockquote></div><div>That''s what I want! A
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place to write, and (if I''m lucky) a place to discuss and \"commune\" with
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people. That used to happen a lot at <i>Quintessence of Dust</i>.<span></span></div></div></div><div><br
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/></div><div>Okay, but why here? This blog is over 15 years old and was started
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when I was a Christian believer. <a href=\"https://sfmatheson.blogspot.com/2007/08/kicking-off-my-blog.html\"
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target=\"_blank\">Its founding themes</a> were anchored in a desire to help
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Christians understand and enjoy biology, to help them shake free of misinformation
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and dishonesty. It has twice languished through long hiatuses and was <a href=\"https://sfmatheson.blogspot.com/p/about.html\"
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target=\"_blank\">remodeled</a> back in 2017 a few years after I deconverted.
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Maybe it''s time to start anew? I think not, for many of those same reasons:
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I''m still a biologist who loves science, still worried about misinformation,
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and still rooted in the power of scientific explanation. I''m still a bardolator
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and a Red Sox fan. <a href=\"https://sfmatheson.blogspot.com/p/about.html\">I''m
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still me</a>, and <i>Quintessence of Dust</i> is still my blog. The new <a
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href=\"https://sfmatheson.blogspot.com/p/about.html\" target=\"_blank\">About
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page</a> is slightly remodeled from 2017, and hints at the next post, which
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will outline some new goals and ongoing projects.</div><div><br /></div><div>A
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final note on inspiration, from Imani Perry, writing in her newsletter (<a
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href=\"https://newsletters.theatlantic.com/unsettled-territory/\" target=\"_blank\">Unsettled
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Territory</a>) at <i>The Atlantic</i>. The piece is \"<a href=\"https://newsletters.theatlantic.com/unsettled-territory/63af3facace609003751bacc/becoming-writer-habit-journalism/\"
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target=\"_blank\">Writing is a Democratic Art</a>.\" It''s for subscribers
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only but here is her challenge:</div><div><blockquote>Thinking and writing
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at a faster pace stretched me and gave me greater confidence. Sometimes I
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changed my mind about what I’d written a day later. But that was okay; a newsletter
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is a moment in time. Writing it each week gave me a lovely rhythm in what
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has otherwise been a difficult and disorienting season in history. Feeling
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stuck can get you stuck. But writing can, and should, inspire deeds.</blockquote></div>","tags":["Introduction"],"language":"en","references":[],"blog_id":"5764g49","blog":{"id":"5764g49","title":"Quintessence
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influences on scientific literacy. Additional topics: philosophy, baseball,
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scientific culture, and Shakespeare. My main theme is <b><u>scientific explanation</u></b>.","language":"en","favicon":null,"feed_url":"http://sfmatheson.blogspot.com/feeds/posts/default","home_page_url":"http://sfmatheson.blogspot.com/","user_id":"8498eaf6-8c58-4b58-bc15-27eda292b1aa","created_at":"2023-05-31T14:21:27+00:00","indexed_at":"2023-04-18","feed_format":"application/atom+xml","license":"https://creativecommons.org/licenses/by/4.0/legalcode","generator":"Blogger
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years and a million links","summary":"As trailed on a Twitter thread last
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names to their original descriptions in the taxonomic literature. Putting
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basically “um, what, exactly, have you been doing all these years?”. TL;DR
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Across fungi, plants, and animals approx 1.3 million names have been linked
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25, 2023</a></blockquote> \n<p>The preprint is on bioRxiv <a href=\"https://doi.org/10.1101/2023.05.29.542697\">doi:10.1101/2023.05.29.542697</a></p>\n<blockquote>\n<p>A
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major gap in the biodiversity knowledge graph is a connection between taxonomic
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across three large taxonomic databases: Index Fungorum, International Plant
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Names Index (IPNI), and the Index of Organism Names (ION). Over a million
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names have been matched to DOIs or other persistent identifiers for taxonomic
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publications. This represents approximately 36% of names for which publication
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data is available. The mappings between LSIDs and publication PIDs are made
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available through ChecklistBank. Applications of this mapping are discussed,
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and publications to authors of those names.</p>\n</blockquote>\n<p>Much of
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the work has been linking taxa to names, which still has huge gaps. There
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are also interesting differences in coverage between plants, animals, and
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fungi (see preprint for details).</p>\n\n<div class=\"separator\" style=\"clear:
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both;\"><a href=\"https://blogger.googleusercontent.com/img/b/R29vZ2xl/AVvXsEhdWsSQhqi1DErXMIHm28g37-fiALNIsI5eQZmvoX_Fe03ZSwtKHbYt-LCsCCAUop0AGcwy_w7NpIjylVH1hNrM9oW-6j9e6tHASha49TTqFvDg2_tEx3r74RRFsjUo4M_Qat8NmKaZSChOt2hI3LsMjTVLrEVirEckU-9Ei7ug-7OHQlR4LA/s2276/animals-coverage.png\"
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class=\"separator\" style=\"clear: both;\"><a href=\"https://blogger.googleusercontent.com/img/b/R29vZ2xl/AVvXsEgf0YBuvNSXWAJTfQ1jk4XSocMzCYHP7t6IPUqhjQ3mftgM_850igWaD2copgNH6Xk6T62xBU641wvwOvXgCCDY3m2xC_gaILXO9RGx8H3Gpy5OOncsLb9smpT2LIgtYOExVBVdDRWqA0AZ8-mQjWL7dL5TiG7MqVu8spT8ACoGOPR_T36hRA/s2276/plants-coverage.png\"
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is also a simple app to demonstrate these links, see <a href=\"https://species-cite.herokuapp.com\">https://species-cite.herokuapp.com</a>.\n\n\n\n<blockquote>\n<p>Written
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with <a href=\"https://stackedit.io/\">StackEdit</a>.</p>\n</blockquote>","tags":[],"language":"en","references":[],"blog_id":"tyfqw20","blog":{"id":"tyfqw20","title":"iPhylo","description":"Rants,
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and biodiversity informatics. For more ranty and less considered opinions,
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see my <a href=\"https://twitter.com/rdmpage\">Twitter feed</a>.<br>ISSN 2051-8188.
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networks, and learn about the work being done at peer institutions and the
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limited metric to evaluate an overall institution''s research power –
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especially as it relates to trainees.</p><p>In order to understand how to
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build a successful research program, we wanted to understand who had already
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done so. Conceivably, by finding successful examples, we can conduct interviews
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and focus groups among key stakeholders at these programs to understand what
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they did, and how these actions can be replicated. We were particularly interested
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in seeing which programs demonstrated a high number of accepted abstracts
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and which programs were able to improve their abstract performance from year
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to year. </p><p>The <a href=\"https://www.academicsurgicalcongress.org/?ref=ideasurg.pub\">Academic
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Surgical Congress</a> (ASC) is a joint surgical meeting co-hosted by the <a
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href=\"https://www.aasurg.org/?ref=ideasurg.pub\">Association for Academic
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Surgery</a> (AAS) and the <a href=\"https://www.susweb.org/?ref=ideasurg.pub\">Society
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for University Surgeons</a> (SUS) and held annually in February. Anecdotally,
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it is a popular conference for students and residents to attend. The ASC maintains
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a public archive of all abstracts dating from 2015-2020. We obtained a machine
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readable version of this public database through the webmaster (this version
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of the data spans 2016 to 2023).</p><p>For each abstract, we looked at the
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year and primary institution at which the work was conducted. In order to
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intuit the primary institution, we searched the institution block string for
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the first presence of \"university\", \"hospital\", \"institute\", or \"medical
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center\" or the first expression to occur before a comma. This method was
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chosen as institutions’ names are written variably (Department of Surgery,
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University Hospital, New York, NY vs. University Hospital, Division of Colorectal
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Surgery, Department of Surgery, New York, NY). Unfortunately, our code is
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unable to merge slight variations in the resultant institution name (University
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of Michigan vs. University of Michigan Ann Arbor). </p><p>In order to do a
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primary survey of institutional trends in this dataset, we conducted the following
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analyses. First, we measured the number of abstracts accepted each year from
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2016 to 2023. Second, we looked at the number of accepted abstracts by institution
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over the entire study period. Then, we looked at the number of abstract institutions
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by institution and year to study changes in institutional trends over time.
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Finally, we did a subset analysis on post-COVID data (2021 to 2023) to look
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at absolute and per cent year-over-year changes in accepted abstracts to see
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which institutions were able to significantly increase their abstract performance
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in one year. </p><h3 id=\"accepted-abstracts-are-increasing-but-down-from-peak\">Accepted
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Abstracts are increasing but down from peak</h3><p>We plotted the total number
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of abstracts accepted by year. The number of accepted abstracts increased
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from 1125 in 2016 to an all-time high of 1742 in 2020 before declining to
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922 and 848 in 2021 and 2022, respectively. Accepted abstracts have since
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rebounded to 1469 in 2023, or roughly 84% of the maximum amount. Of note,
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the 2021 and 2022 meetings were held virtually due to the COVID-19 pandemic.
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Conversely the 2020 meeting was held immediately prior to the institution
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of lockdowns and other social distancing policies.</p><figure class=\"kg-card
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kg-image-card kg-width-wide\"><img src=\"https://www.ideasurg.pub/content/images/2023/06/newplot--1-.png\"
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class=\"kg-image\" alt loading=\"lazy\" width=\"1400\" height=\"800\" srcset=\"https://www.ideasurg.pub/content/images/size/w600/2023/06/newplot--1-.png
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600w, https://www.ideasurg.pub/content/images/size/w1000/2023/06/newplot--1-.png
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1000w, https://www.ideasurg.pub/content/images/2023/06/newplot--1-.png 1400w\"
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sizes=\"(min-width: 1200px) 1200px\"></figure><h3 id=\"alabama-michigan-lead-abstract-acceptances-during-study-period\">Alabama,
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Michigan lead abstract acceptances during study period</h3><p>Next, we plotted
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the total number of accepted abstracts by institution. The graph shows data
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for the twenty leading institutions. The University of Alabama and the University
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of Michigan lead in abstract acceptances during the study period (477 and
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348, respectively). Given an eight year time-range, the top twenty institutions
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reflect an average annual abstract acceptance ranging from roughly thirteen
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to 60.</p><figure class=\"kg-card kg-image-card kg-width-wide\"><img src=\"https://www.ideasurg.pub/content/images/2023/06/newplot--2-.png\"
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class=\"kg-image\" alt loading=\"lazy\" width=\"1400\" height=\"800\" srcset=\"https://www.ideasurg.pub/content/images/size/w600/2023/06/newplot--2-.png
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600w, https://www.ideasurg.pub/content/images/size/w1000/2023/06/newplot--2-.png
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1000w, https://www.ideasurg.pub/content/images/2023/06/newplot--2-.png 1400w\"
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sizes=\"(min-width: 1200px) 1200px\"></figure><p>We also plotted the number
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of accepted abstracts by year using a separate line plot for each individual.
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While Michigan has maintained between 30 and 60 abstracts for each year, Alabama
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went from 6 to 48 abstracts between 2016 and 2017 and has maintained greater
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than 60 accepted abstracts each year. There is a notable dip in the number
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of accepted abstracts from 2021 to 2022, consistent with a similar trend in
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the total yearly acceptance data. </p><figure class=\"kg-card kg-image-card
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kg-width-wide\"><img src=\"https://www.ideasurg.pub/content/images/2023/06/newplot--8-.png\"
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class=\"kg-image\" alt loading=\"lazy\" width=\"1400\" height=\"800\" srcset=\"https://www.ideasurg.pub/content/images/size/w600/2023/06/newplot--8-.png
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600w, https://www.ideasurg.pub/content/images/size/w1000/2023/06/newplot--8-.png
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1000w, https://www.ideasurg.pub/content/images/2023/06/newplot--8-.png 1400w\"
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sizes=\"(min-width: 1200px) 1200px\"></figure><p>Overall, there appears to
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be a general clustering of the other eighteen institutions in the top twenty,
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a trend seen in both the aggregate and the year-to-year data.</p><h3 id=\"mgh-brigham-lead-absolute-and-per-cent-increase-in-abstracts-in-2023\">MGH,
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Brigham lead absolute and per cent increase in abstracts in 2023</h3><p>Next,
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we measured the absolute and percent change between accepted abstracts in
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consecutive years for the top twenty institutions. We restricted our analysis
|
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to 2021, 2022, and 2023. The greatest absolute increases in accepted abstracts
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came from Massachusetts General Hospital in 2023 (27), Brigham and Women''s
|
140
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Hospital in 2023 (16), and UCLA in 2022 (16). The greatest percentage increases
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in accepted abstracts came from Brigham and Women''s Hospital in 2023 (800%),
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Johns Hopkins in 2023 (500%), and Massachusetts General Hospital in 2023 (386%).
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Of note, Johns Hopkins and Brigham and Women''s Hospital also had the largest
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absolute and percentage decrease in accepted abstracts in 2022. Interestingly,
|
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University of Alabama (+4 in 2022, +3 in 2023) and University of Michigan
|
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(+11 in 2023)  - which rank at the top in all time and yearly abstracts
|
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- experienced less extreme swings during the 2021-2023 time period.</p><figure
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class=\"kg-card kg-image-card kg-width-wide\"><img src=\"https://www.ideasurg.pub/content/images/2023/06/newplot--7-.png\"
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class=\"kg-image\" alt loading=\"lazy\" width=\"1400\" height=\"800\" srcset=\"https://www.ideasurg.pub/content/images/size/w600/2023/06/newplot--7-.png
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600w, https://www.ideasurg.pub/content/images/size/w1000/2023/06/newplot--7-.png
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1000w, https://www.ideasurg.pub/content/images/2023/06/newplot--7-.png 1400w\"
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sizes=\"(min-width: 1200px) 1200px\"></figure><figure class=\"kg-card kg-image-card
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kg-width-wide\"><img src=\"https://www.ideasurg.pub/content/images/2023/06/newplot--4-.png\"
|
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class=\"kg-image\" alt loading=\"lazy\" width=\"1400\" height=\"800\" srcset=\"https://www.ideasurg.pub/content/images/size/w600/2023/06/newplot--4-.png
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600w, https://www.ideasurg.pub/content/images/size/w1000/2023/06/newplot--4-.png
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1000w, https://www.ideasurg.pub/content/images/2023/06/newplot--4-.png 1400w\"
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sizes=\"(min-width: 1200px) 1200px\"></figure><h3 id=\"conclusions\">Conclusions</h3><p>In
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this data exploration, we analyzed abstract acceptance data for the Academic
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Surgical Congress between 2016 and 2023. We showed that the number of abstracts
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increased from 2016 to 2020, dipped in 2021 and 2022, and is recovering in
|
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2023 - likely reflecting the variability forced by COVID19 and the transition
|
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to virtual conferences in 2021 and 2022. We also showed that the University
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of Alabama and the University of Michigan have significantly led accepted
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abstracts throughout the study period with University of Alabama maintaining
|
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a top position following an impressive 700 percent increase in abstracts between
|
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2016 and 2017. In 2023, Massachusetts General Hospital and Brigham and Women''s
|
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Hospital have led absolute and percent increases in abstract submissions,
|
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though this may reflect some degree of reversion following drops in abstract
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acceptances in 2022.</p><h3 id=\"limitations-and-future-directions\">Limitations
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and Future Directions</h3><p>This data exploration has several limitations.
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First, our study is limited to one conference and conferences themselves are
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only a limited component of academic productivity. However, the Academic Surgical
|
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Congress is an international meeting that is well regarded, popular among
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trainees, and has consistent multi-year data. Another limitation of our study
|
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is our assumption that the first institution listed in the author block is
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the primary institution–a method which does not take into account multi-institutional
|
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abstracts. However, we suspect this reflects the minority of the abstracts.
|
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Finally, we have not fully optimized name-matching to correctly combine terms
|
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like \"University of Michigan\" and \"University of Michigan Ann Arbor\".
|
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However, given that most of the data currently is only for the top 20 institutions,
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we believe the overall trends will be preserved.</p><p>In the future, we can
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attempt to obtain more granular data on authors and institutions and optimize
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the capture of this data for aggregated analysis. We are also researching
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different techniques to perform string matching to fix the institution name
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issue. We can improve the generalizability of our findings by bringing in
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similar data from other large meetings – such as the American College
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of Surgeons Clinical Congress and the Society of American Gastrointestinal
|
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and Endoscopic Surgeons (SAGES). We can also use the PubMed API to perform
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similar analyses in top surgical journals such as JAMA Surgery or the Annals
|
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of Surgery.</p><p>With regards to the data we have obtained, we can conduct
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survey-based studies or focus groups with key stakeholders from institutions
|
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that have demonstrated strong abstract performance during the study period
|
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as well as those who have shown significant improvement. By talking to department
|
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chairs, program directors, and research and education leaders we can understand
|
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what steps each institution took to improve abstract acceptance (e.g. hiring
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a new research faculty, creating a mentorship program, providing administrative
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support for IRBs/stats etc.). Following this, we can map individual interventions
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to improvements to understand the contribution that each can have on increased
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academic productivity.</p><p>We have also not yet mined the abstract body
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for themes. Using natural language processing, we can understand how themes
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and trends of emergent research change from year to year, and even develop
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models to predict which topics will be of interest in future works. This will
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likely be the subject of a future data exploration.</p><p>Overall, we hope
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to demonstrate that abstract acceptance data from a single international meeting
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can provide interesting, meaningful data on which programs have strong research
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infrastructure and which programs are making strides to achieve it. By studying
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this data and improving the inputs, we can better understand whose example
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to follow and ultimately develop a playbook that all institutions can employ
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to maximize the academic opportunities of students and trainees.</p><h3 id=\"see-the-data\">See
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the Data</h3><p>You can see the raw data as well as all of our code here,
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and use this for your own studies with appropriate attribution.</p><p><a href=\"https://deepnote.com/@tejas-sathe-a73f/ASC-Data-Exploration-948ca211-bfc7-459b-9d6d-ef952a5baf32?ref=ideasurg.pub\">https://deepnote.com/@tejas-sathe-a73f/ASC-Data-Exploration-948ca211-bfc7-459b-9d6d-ef952a5baf32</a></p>","tags":["Pre-Print"],"language":"en","references":[],"blog_id":"3cxcm20","blog":{"id":"3cxcm20","title":"I.D.E.A.S.","description":"Innovation
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string: '{"id":"153d65e1-f0e4-49a6-a969-33d2129800ba","doi":"https://doi.org/10.59350/ytvy2-59450","url":"https://www.ideasurg.pub/academic-powerhouse","title":"How
|
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|
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to Build an Academic Powerhouse: Let''s Study Who''s Doing it","summary":"Students
|
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and residents aspiring for a career in academic surgery are looking for training
|
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programs that will help jumpstart their careers by exposing them to mentorship
|
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and opportunities to conduct research. While the gold standard of academic
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productivity (for the time being) remains peer-reviewed publications, conference
|
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posters and presentations are an important secondary metric. In addition to
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feeding eventual papers, conference talks allow trainees to practice presentation
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+
skills, build...","published_at":1685768070,"updated_at":1685768070,"indexed_at":1689006804,"authors":[{"url":null,"name":"Tejas
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S. Sathe, MD"}],"image":null,"tags":["Pre-Print"],"language":"en","reference":[],"blog_id":"3cxcm20","blog_name":"I.D.E.A.S.","blog":{"id":"3cxcm20","title":"I.D.E.A.S.","description":"Innovation
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and Design Experiments in Academic Surgery (I.D.E.A.S.)","language":"en","favicon":"https://www.ideasurg.pub/favicon.png","feed_url":"https://www.ideasurg.pub/rss/","home_page_url":"https://www.ideasurg.pub/","user_id":"8498eaf6-8c58-4b58-bc15-27eda292b1aa","created_at":"2023-05-31T13:44:29+00:00","indexed_at":"2023-01-04","feed_format":"application/rss+xml","license":"https://creativecommons.org/licenses/by/4.0/legalcode","generator":"Ghost
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5.
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recorded_at:
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recorded_with: VCR 6.
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5.53","category":"Medical and Health Sciences","prefix":"10.59350","modified_at":"2023-06-03T04:54:30+00:00","version":"https://jsonfeed.org/version/1.1","backlog":false,"current_feed_url":null,"expired":null}}'
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recorded_at: Tue, 11 Jul 2023 05:58:11 GMT
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recorded_with: VCR 6.2.0
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