cheminee 0.0.14 → 0.0.15

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Files changed (73) hide show
  1. checksums.yaml +4 -4
  2. data/Gemfile.lock +8 -8
  3. data/README.md +11 -33
  4. data/cheminee.gemspec +1 -2
  5. data/docs/DefaultApi.md +16 -475
  6. data/lib/cheminee/api/default_api.rb +17 -481
  7. data/lib/cheminee/api_client.rb +21 -23
  8. data/lib/cheminee/api_error.rb +1 -1
  9. data/lib/cheminee/configuration.rb +5 -6
  10. data/lib/cheminee/models/smile.rb +1 -1
  11. data/lib/cheminee/models/standardized_smile.rb +1 -1
  12. data/lib/cheminee/version.rb +2 -2
  13. data/lib/cheminee.rb +3 -18
  14. data/pkg/cheminee-0.0.15.gem +0 -0
  15. data/spec/api_client_spec.rb +1 -1
  16. data/spec/configuration_spec.rb +4 -4
  17. data/spec/spec_helper.rb +1 -1
  18. metadata +3 -75
  19. data/docs/BulkRequest.md +0 -18
  20. data/docs/BulkRequestDoc.md +0 -20
  21. data/docs/CreateIndexError.md +0 -18
  22. data/docs/GetIndexesResponseError.md +0 -18
  23. data/docs/IndexMeta.md +0 -20
  24. data/docs/IndexSchema.md +0 -20
  25. data/docs/ListIndexResponseErr.md +0 -18
  26. data/docs/PostIndexBulkResponseError.md +0 -18
  27. data/docs/PostIndexBulkResponseOk.md +0 -18
  28. data/docs/PostIndexBulkResponseOkStatus.md +0 -20
  29. data/docs/QueryResponseError.md +0 -18
  30. data/docs/QuerySearchHit.md +0 -22
  31. data/docs/Schema.md +0 -20
  32. data/docs/Smiles.md +0 -18
  33. data/docs/StandardizedSmiles.md +0 -20
  34. data/docs/StructureResponseError.md +0 -18
  35. data/docs/StructureSearchHit.md +0 -26
  36. data/docs/SubstructureSearchHit.md +0 -24
  37. data/lib/cheminee/models/bulk_request.rb +0 -223
  38. data/lib/cheminee/models/bulk_request_doc.rb +0 -232
  39. data/lib/cheminee/models/create_index_error.rb +0 -221
  40. data/lib/cheminee/models/get_indexes_response_error.rb +0 -221
  41. data/lib/cheminee/models/index_meta.rb +0 -237
  42. data/lib/cheminee/models/index_schema.rb +0 -233
  43. data/lib/cheminee/models/list_index_response_err.rb +0 -221
  44. data/lib/cheminee/models/post_index_bulk_response_error.rb +0 -221
  45. data/lib/cheminee/models/post_index_bulk_response_ok.rb +0 -223
  46. data/lib/cheminee/models/post_index_bulk_response_ok_status.rb +0 -223
  47. data/lib/cheminee/models/query_response_error.rb +0 -221
  48. data/lib/cheminee/models/query_search_hit.rb +0 -249
  49. data/lib/cheminee/models/schema.rb +0 -233
  50. data/lib/cheminee/models/smiles.rb +0 -221
  51. data/lib/cheminee/models/standardized_smiles.rb +0 -223
  52. data/lib/cheminee/models/structure_response_error.rb +0 -221
  53. data/lib/cheminee/models/structure_search_hit.rb +0 -281
  54. data/lib/cheminee/models/substructure_search_hit.rb +0 -265
  55. data/pkg/cheminee-0.0.14.gem +0 -0
  56. data/spec/models/bulk_request_doc_spec.rb +0 -42
  57. data/spec/models/bulk_request_spec.rb +0 -36
  58. data/spec/models/create_index_error_spec.rb +0 -36
  59. data/spec/models/get_indexes_response_error_spec.rb +0 -36
  60. data/spec/models/index_meta_spec.rb +0 -42
  61. data/spec/models/index_schema_spec.rb +0 -42
  62. data/spec/models/list_index_response_err_spec.rb +0 -36
  63. data/spec/models/post_index_bulk_response_error_spec.rb +0 -36
  64. data/spec/models/post_index_bulk_response_ok_spec.rb +0 -36
  65. data/spec/models/post_index_bulk_response_ok_status_spec.rb +0 -42
  66. data/spec/models/query_response_error_spec.rb +0 -36
  67. data/spec/models/query_search_hit_spec.rb +0 -48
  68. data/spec/models/schema_spec.rb +0 -42
  69. data/spec/models/smiles_spec.rb +0 -36
  70. data/spec/models/standardized_smiles_spec.rb +0 -42
  71. data/spec/models/structure_response_error_spec.rb +0 -36
  72. data/spec/models/structure_search_hit_spec.rb +0 -60
  73. data/spec/models/substructure_search_hit_spec.rb +0 -54
@@ -1,221 +0,0 @@
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- =begin
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- #Cheminée
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-
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- #Cheminée: The Chemical Structure Search Engine
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-
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- The version of the OpenAPI document: 1.0
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-
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- Generated by: https://openapi-generator.tech
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- OpenAPI Generator version: 7.3.0-SNAPSHOT
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-
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- =end
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-
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- require 'date'
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- require 'time'
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-
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- module Cheminee
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- class StructureResponseError
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- attr_accessor :error
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-
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- # Attribute mapping from ruby-style variable name to JSON key.
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- def self.attribute_map
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- {
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- :'error' => :'error'
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- }
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- end
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-
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- # Returns all the JSON keys this model knows about
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- def self.acceptable_attributes
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- attribute_map.values
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- end
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-
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- # Attribute type mapping.
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- def self.openapi_types
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- {
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- :'error' => :'String'
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- }
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- end
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-
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- # List of attributes with nullable: true
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- def self.openapi_nullable
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- Set.new([
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- ])
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- end
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-
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- # Initializes the object
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- # @param [Hash] attributes Model attributes in the form of hash
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- def initialize(attributes = {})
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- if (!attributes.is_a?(Hash))
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- fail ArgumentError, "The input argument (attributes) must be a hash in `Cheminee::StructureResponseError` initialize method"
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- end
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-
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- # check to see if the attribute exists and convert string to symbol for hash key
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- attributes = attributes.each_with_object({}) { |(k, v), h|
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- if (!self.class.attribute_map.key?(k.to_sym))
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- fail ArgumentError, "`#{k}` is not a valid attribute in `Cheminee::StructureResponseError`. Please check the name to make sure it's valid. List of attributes: " + self.class.attribute_map.keys.inspect
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- end
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- h[k.to_sym] = v
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- }
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-
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- if attributes.key?(:'error')
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- self.error = attributes[:'error']
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- else
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- self.error = nil
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- end
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- end
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-
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- # Show invalid properties with the reasons. Usually used together with valid?
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- # @return Array for valid properties with the reasons
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- def list_invalid_properties
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- warn '[DEPRECATED] the `list_invalid_properties` method is obsolete'
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- invalid_properties = Array.new
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- if @error.nil?
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- invalid_properties.push('invalid value for "error", error cannot be nil.')
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- end
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-
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- invalid_properties
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- end
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-
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- # Check to see if the all the properties in the model are valid
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- # @return true if the model is valid
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- def valid?
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- warn '[DEPRECATED] the `valid?` method is obsolete'
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- return false if @error.nil?
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- true
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- end
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-
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- # Checks equality by comparing each attribute.
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- # @param [Object] Object to be compared
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- def ==(o)
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- return true if self.equal?(o)
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- self.class == o.class &&
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- error == o.error
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- end
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-
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- # @see the `==` method
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- # @param [Object] Object to be compared
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- def eql?(o)
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- self == o
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- end
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-
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- # Calculates hash code according to all attributes.
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- # @return [Integer] Hash code
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- def hash
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- [error].hash
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- end
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-
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- # Builds the object from hash
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- # @param [Hash] attributes Model attributes in the form of hash
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- # @return [Object] Returns the model itself
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- def self.build_from_hash(attributes)
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- return nil unless attributes.is_a?(Hash)
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- attributes = attributes.transform_keys(&:to_sym)
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- transformed_hash = {}
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- openapi_types.each_pair do |key, type|
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- if attributes.key?(attribute_map[key]) && attributes[attribute_map[key]].nil?
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- transformed_hash["#{key}"] = nil
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- elsif type =~ /\AArray<(.*)>/i
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- # check to ensure the input is an array given that the attribute
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- # is documented as an array but the input is not
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- if attributes[attribute_map[key]].is_a?(Array)
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- transformed_hash["#{key}"] = attributes[attribute_map[key]].map { |v| _deserialize($1, v) }
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- end
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- elsif !attributes[attribute_map[key]].nil?
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- transformed_hash["#{key}"] = _deserialize(type, attributes[attribute_map[key]])
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- end
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- end
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- new(transformed_hash)
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- end
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-
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- # Deserializes the data based on type
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- # @param string type Data type
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- # @param string value Value to be deserialized
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- # @return [Object] Deserialized data
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- def self._deserialize(type, value)
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- case type.to_sym
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- when :Time
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- Time.parse(value)
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- when :Date
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- Date.parse(value)
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- when :String
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- value.to_s
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- when :Integer
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- value.to_i
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- when :Float
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- value.to_f
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- when :Boolean
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- if value.to_s =~ /\A(true|t|yes|y|1)\z/i
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- true
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- else
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- false
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- end
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- when :Object
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- # generic object (usually a Hash), return directly
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- value
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- when /\AArray<(?<inner_type>.+)>\z/
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- inner_type = Regexp.last_match[:inner_type]
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- value.map { |v| _deserialize(inner_type, v) }
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- when /\AHash<(?<k_type>.+?), (?<v_type>.+)>\z/
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- k_type = Regexp.last_match[:k_type]
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- v_type = Regexp.last_match[:v_type]
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- {}.tap do |hash|
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- value.each do |k, v|
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- hash[_deserialize(k_type, k)] = _deserialize(v_type, v)
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- end
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- end
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- else # model
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- # models (e.g. Pet) or oneOf
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- klass = Cheminee.const_get(type)
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- klass.respond_to?(:openapi_any_of) || klass.respond_to?(:openapi_one_of) ? klass.build(value) : klass.build_from_hash(value)
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- end
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- end
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-
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- # Returns the string representation of the object
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- # @return [String] String presentation of the object
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- def to_s
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- to_hash.to_s
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- end
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-
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- # to_body is an alias to to_hash (backward compatibility)
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- # @return [Hash] Returns the object in the form of hash
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- def to_body
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- to_hash
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- end
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-
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- # Returns the object in the form of hash
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- # @return [Hash] Returns the object in the form of hash
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- def to_hash
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- hash = {}
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- self.class.attribute_map.each_pair do |attr, param|
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- value = self.send(attr)
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- if value.nil?
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- is_nullable = self.class.openapi_nullable.include?(attr)
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- next if !is_nullable || (is_nullable && !instance_variable_defined?(:"@#{attr}"))
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- end
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-
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- hash[param] = _to_hash(value)
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- end
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- hash
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- end
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-
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- # Outputs non-array value in the form of hash
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- # For object, use to_hash. Otherwise, just return the value
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- # @param [Object] value Any valid value
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- # @return [Hash] Returns the value in the form of hash
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- def _to_hash(value)
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- if value.is_a?(Array)
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- value.compact.map { |v| _to_hash(v) }
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- elsif value.is_a?(Hash)
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- {}.tap do |hash|
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- value.each { |k, v| hash[k] = _to_hash(v) }
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- end
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- elsif value.respond_to? :to_hash
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- value.to_hash
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- else
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- value
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- end
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- end
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-
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- end
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-
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- end
@@ -1,281 +0,0 @@
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- =begin
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- #Cheminée
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-
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- #Cheminée: The Chemical Structure Search Engine
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-
6
- The version of the OpenAPI document: 1.0
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-
8
- Generated by: https://openapi-generator.tech
9
- OpenAPI Generator version: 7.3.0-SNAPSHOT
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-
11
- =end
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-
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- require 'date'
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- require 'time'
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-
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- module Cheminee
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- class StructureSearchHit
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- attr_accessor :extra_data
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-
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- attr_accessor :smiles
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-
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- attr_accessor :score
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-
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- attr_accessor :query
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-
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- attr_accessor :used_tautomers
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-
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- # Attribute mapping from ruby-style variable name to JSON key.
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- def self.attribute_map
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- {
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- :'extra_data' => :'extra_data',
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- :'smiles' => :'smiles',
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- :'score' => :'score',
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- :'query' => :'query',
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- :'used_tautomers' => :'used_tautomers'
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- }
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- end
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-
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- # Returns all the JSON keys this model knows about
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- def self.acceptable_attributes
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- attribute_map.values
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- end
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-
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- # Attribute type mapping.
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- def self.openapi_types
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- {
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- :'extra_data' => :'Object',
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- :'smiles' => :'String',
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- :'score' => :'Float',
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- :'query' => :'String',
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- :'used_tautomers' => :'Boolean'
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- }
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- end
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-
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- # List of attributes with nullable: true
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- def self.openapi_nullable
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- Set.new([
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- :'extra_data',
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- ])
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- end
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-
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- # Initializes the object
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- # @param [Hash] attributes Model attributes in the form of hash
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- def initialize(attributes = {})
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- if (!attributes.is_a?(Hash))
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- fail ArgumentError, "The input argument (attributes) must be a hash in `Cheminee::StructureSearchHit` initialize method"
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- end
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-
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- # check to see if the attribute exists and convert string to symbol for hash key
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- attributes = attributes.each_with_object({}) { |(k, v), h|
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- if (!self.class.attribute_map.key?(k.to_sym))
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- fail ArgumentError, "`#{k}` is not a valid attribute in `Cheminee::StructureSearchHit`. Please check the name to make sure it's valid. List of attributes: " + self.class.attribute_map.keys.inspect
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- end
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- h[k.to_sym] = v
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- }
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-
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- if attributes.key?(:'extra_data')
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- self.extra_data = attributes[:'extra_data']
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- else
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- self.extra_data = nil
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- end
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-
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- if attributes.key?(:'smiles')
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- self.smiles = attributes[:'smiles']
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- else
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- self.smiles = nil
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- end
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-
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- if attributes.key?(:'score')
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- self.score = attributes[:'score']
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- else
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- self.score = nil
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- end
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-
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- if attributes.key?(:'query')
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- self.query = attributes[:'query']
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- else
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- self.query = nil
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- end
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-
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- if attributes.key?(:'used_tautomers')
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- self.used_tautomers = attributes[:'used_tautomers']
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- else
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- self.used_tautomers = nil
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- end
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- end
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-
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- # Show invalid properties with the reasons. Usually used together with valid?
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- # @return Array for valid properties with the reasons
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- def list_invalid_properties
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- warn '[DEPRECATED] the `list_invalid_properties` method is obsolete'
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- invalid_properties = Array.new
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- if @smiles.nil?
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- invalid_properties.push('invalid value for "smiles", smiles cannot be nil.')
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- end
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-
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- if @score.nil?
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- invalid_properties.push('invalid value for "score", score cannot be nil.')
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- end
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-
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- if @query.nil?
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- invalid_properties.push('invalid value for "query", query cannot be nil.')
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- end
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-
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- if @used_tautomers.nil?
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- invalid_properties.push('invalid value for "used_tautomers", used_tautomers cannot be nil.')
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- end
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-
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- invalid_properties
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- end
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-
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- # Check to see if the all the properties in the model are valid
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- # @return true if the model is valid
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- def valid?
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- warn '[DEPRECATED] the `valid?` method is obsolete'
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- return false if @smiles.nil?
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- return false if @score.nil?
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- return false if @query.nil?
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- return false if @used_tautomers.nil?
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- true
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- end
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-
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- # Checks equality by comparing each attribute.
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- # @param [Object] Object to be compared
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- def ==(o)
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- return true if self.equal?(o)
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- self.class == o.class &&
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- extra_data == o.extra_data &&
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- smiles == o.smiles &&
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- score == o.score &&
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- query == o.query &&
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- used_tautomers == o.used_tautomers
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- end
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-
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- # @see the `==` method
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- # @param [Object] Object to be compared
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- def eql?(o)
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- self == o
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- end
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-
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- # Calculates hash code according to all attributes.
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- # @return [Integer] Hash code
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- def hash
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- [extra_data, smiles, score, query, used_tautomers].hash
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- end
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-
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- # Builds the object from hash
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- # @param [Hash] attributes Model attributes in the form of hash
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- # @return [Object] Returns the model itself
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- def self.build_from_hash(attributes)
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- return nil unless attributes.is_a?(Hash)
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- attributes = attributes.transform_keys(&:to_sym)
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- transformed_hash = {}
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- openapi_types.each_pair do |key, type|
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- if attributes.key?(attribute_map[key]) && attributes[attribute_map[key]].nil?
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- transformed_hash["#{key}"] = nil
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- elsif type =~ /\AArray<(.*)>/i
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- # check to ensure the input is an array given that the attribute
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- # is documented as an array but the input is not
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- if attributes[attribute_map[key]].is_a?(Array)
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- transformed_hash["#{key}"] = attributes[attribute_map[key]].map { |v| _deserialize($1, v) }
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- end
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- elsif !attributes[attribute_map[key]].nil?
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- transformed_hash["#{key}"] = _deserialize(type, attributes[attribute_map[key]])
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- end
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- end
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- new(transformed_hash)
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- end
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-
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- # Deserializes the data based on type
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- # @param string type Data type
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- # @param string value Value to be deserialized
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- # @return [Object] Deserialized data
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- def self._deserialize(type, value)
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- case type.to_sym
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- when :Time
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- Time.parse(value)
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- when :Date
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- Date.parse(value)
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- when :String
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- value.to_s
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- when :Integer
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- value.to_i
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- when :Float
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- value.to_f
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- when :Boolean
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- if value.to_s =~ /\A(true|t|yes|y|1)\z/i
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- true
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- else
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- false
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- end
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- when :Object
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- # generic object (usually a Hash), return directly
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- value
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- when /\AArray<(?<inner_type>.+)>\z/
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- inner_type = Regexp.last_match[:inner_type]
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- value.map { |v| _deserialize(inner_type, v) }
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- when /\AHash<(?<k_type>.+?), (?<v_type>.+)>\z/
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- k_type = Regexp.last_match[:k_type]
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- v_type = Regexp.last_match[:v_type]
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- {}.tap do |hash|
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- value.each do |k, v|
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- hash[_deserialize(k_type, k)] = _deserialize(v_type, v)
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- end
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- end
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- else # model
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- # models (e.g. Pet) or oneOf
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- klass = Cheminee.const_get(type)
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- klass.respond_to?(:openapi_any_of) || klass.respond_to?(:openapi_one_of) ? klass.build(value) : klass.build_from_hash(value)
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- end
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- end
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-
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- # Returns the string representation of the object
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- # @return [String] String presentation of the object
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- def to_s
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- to_hash.to_s
237
- end
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-
239
- # to_body is an alias to to_hash (backward compatibility)
240
- # @return [Hash] Returns the object in the form of hash
241
- def to_body
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- to_hash
243
- end
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-
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- # Returns the object in the form of hash
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- # @return [Hash] Returns the object in the form of hash
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- def to_hash
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- hash = {}
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- self.class.attribute_map.each_pair do |attr, param|
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- value = self.send(attr)
251
- if value.nil?
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- is_nullable = self.class.openapi_nullable.include?(attr)
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- next if !is_nullable || (is_nullable && !instance_variable_defined?(:"@#{attr}"))
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- end
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-
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- hash[param] = _to_hash(value)
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- end
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- hash
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- end
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-
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- # Outputs non-array value in the form of hash
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- # For object, use to_hash. Otherwise, just return the value
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- # @param [Object] value Any valid value
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- # @return [Hash] Returns the value in the form of hash
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- def _to_hash(value)
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- if value.is_a?(Array)
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- value.compact.map { |v| _to_hash(v) }
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- elsif value.is_a?(Hash)
269
- {}.tap do |hash|
270
- value.each { |k, v| hash[k] = _to_hash(v) }
271
- end
272
- elsif value.respond_to? :to_hash
273
- value.to_hash
274
- else
275
- value
276
- end
277
- end
278
-
279
- end
280
-
281
- end