cheminee 0.0.14 → 0.0.15

This diff represents the content of publicly available package versions that have been released to one of the supported registries. The information contained in this diff is provided for informational purposes only and reflects changes between package versions as they appear in their respective public registries.
Files changed (73) hide show
  1. checksums.yaml +4 -4
  2. data/Gemfile.lock +8 -8
  3. data/README.md +11 -33
  4. data/cheminee.gemspec +1 -2
  5. data/docs/DefaultApi.md +16 -475
  6. data/lib/cheminee/api/default_api.rb +17 -481
  7. data/lib/cheminee/api_client.rb +21 -23
  8. data/lib/cheminee/api_error.rb +1 -1
  9. data/lib/cheminee/configuration.rb +5 -6
  10. data/lib/cheminee/models/smile.rb +1 -1
  11. data/lib/cheminee/models/standardized_smile.rb +1 -1
  12. data/lib/cheminee/version.rb +2 -2
  13. data/lib/cheminee.rb +3 -18
  14. data/pkg/cheminee-0.0.15.gem +0 -0
  15. data/spec/api_client_spec.rb +1 -1
  16. data/spec/configuration_spec.rb +4 -4
  17. data/spec/spec_helper.rb +1 -1
  18. metadata +3 -75
  19. data/docs/BulkRequest.md +0 -18
  20. data/docs/BulkRequestDoc.md +0 -20
  21. data/docs/CreateIndexError.md +0 -18
  22. data/docs/GetIndexesResponseError.md +0 -18
  23. data/docs/IndexMeta.md +0 -20
  24. data/docs/IndexSchema.md +0 -20
  25. data/docs/ListIndexResponseErr.md +0 -18
  26. data/docs/PostIndexBulkResponseError.md +0 -18
  27. data/docs/PostIndexBulkResponseOk.md +0 -18
  28. data/docs/PostIndexBulkResponseOkStatus.md +0 -20
  29. data/docs/QueryResponseError.md +0 -18
  30. data/docs/QuerySearchHit.md +0 -22
  31. data/docs/Schema.md +0 -20
  32. data/docs/Smiles.md +0 -18
  33. data/docs/StandardizedSmiles.md +0 -20
  34. data/docs/StructureResponseError.md +0 -18
  35. data/docs/StructureSearchHit.md +0 -26
  36. data/docs/SubstructureSearchHit.md +0 -24
  37. data/lib/cheminee/models/bulk_request.rb +0 -223
  38. data/lib/cheminee/models/bulk_request_doc.rb +0 -232
  39. data/lib/cheminee/models/create_index_error.rb +0 -221
  40. data/lib/cheminee/models/get_indexes_response_error.rb +0 -221
  41. data/lib/cheminee/models/index_meta.rb +0 -237
  42. data/lib/cheminee/models/index_schema.rb +0 -233
  43. data/lib/cheminee/models/list_index_response_err.rb +0 -221
  44. data/lib/cheminee/models/post_index_bulk_response_error.rb +0 -221
  45. data/lib/cheminee/models/post_index_bulk_response_ok.rb +0 -223
  46. data/lib/cheminee/models/post_index_bulk_response_ok_status.rb +0 -223
  47. data/lib/cheminee/models/query_response_error.rb +0 -221
  48. data/lib/cheminee/models/query_search_hit.rb +0 -249
  49. data/lib/cheminee/models/schema.rb +0 -233
  50. data/lib/cheminee/models/smiles.rb +0 -221
  51. data/lib/cheminee/models/standardized_smiles.rb +0 -223
  52. data/lib/cheminee/models/structure_response_error.rb +0 -221
  53. data/lib/cheminee/models/structure_search_hit.rb +0 -281
  54. data/lib/cheminee/models/substructure_search_hit.rb +0 -265
  55. data/pkg/cheminee-0.0.14.gem +0 -0
  56. data/spec/models/bulk_request_doc_spec.rb +0 -42
  57. data/spec/models/bulk_request_spec.rb +0 -36
  58. data/spec/models/create_index_error_spec.rb +0 -36
  59. data/spec/models/get_indexes_response_error_spec.rb +0 -36
  60. data/spec/models/index_meta_spec.rb +0 -42
  61. data/spec/models/index_schema_spec.rb +0 -42
  62. data/spec/models/list_index_response_err_spec.rb +0 -36
  63. data/spec/models/post_index_bulk_response_error_spec.rb +0 -36
  64. data/spec/models/post_index_bulk_response_ok_spec.rb +0 -36
  65. data/spec/models/post_index_bulk_response_ok_status_spec.rb +0 -42
  66. data/spec/models/query_response_error_spec.rb +0 -36
  67. data/spec/models/query_search_hit_spec.rb +0 -48
  68. data/spec/models/schema_spec.rb +0 -42
  69. data/spec/models/smiles_spec.rb +0 -36
  70. data/spec/models/standardized_smiles_spec.rb +0 -42
  71. data/spec/models/structure_response_error_spec.rb +0 -36
  72. data/spec/models/structure_search_hit_spec.rb +0 -60
  73. data/spec/models/substructure_search_hit_spec.rb +0 -54
@@ -1,265 +0,0 @@
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- =begin
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- #Cheminée
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-
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- #Cheminée: The Chemical Structure Search Engine
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-
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- The version of the OpenAPI document: 1.0
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-
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- Generated by: https://openapi-generator.tech
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- OpenAPI Generator version: 7.1.0-SNAPSHOT
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-
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- =end
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-
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- require 'date'
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- require 'time'
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-
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- module Cheminee
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- class SubstructureSearchHit
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- attr_accessor :extra_data
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-
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- attr_accessor :smiles
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-
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- attr_accessor :score
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-
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- attr_accessor :query
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-
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- # Attribute mapping from ruby-style variable name to JSON key.
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- def self.attribute_map
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- {
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- :'extra_data' => :'extra_data',
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- :'smiles' => :'smiles',
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- :'score' => :'score',
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- :'query' => :'query'
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- }
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- end
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-
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- # Returns all the JSON keys this model knows about
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- def self.acceptable_attributes
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- attribute_map.values
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- end
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-
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- # Attribute type mapping.
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- def self.openapi_types
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- {
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- :'extra_data' => :'Object',
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- :'smiles' => :'String',
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- :'score' => :'Float',
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- :'query' => :'String'
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- }
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- end
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-
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- # List of attributes with nullable: true
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- def self.openapi_nullable
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- Set.new([
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- :'extra_data',
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- ])
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- end
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-
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- # Initializes the object
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- # @param [Hash] attributes Model attributes in the form of hash
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- def initialize(attributes = {})
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- if (!attributes.is_a?(Hash))
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- fail ArgumentError, "The input argument (attributes) must be a hash in `Cheminee::SubstructureSearchHit` initialize method"
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- end
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-
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- # check to see if the attribute exists and convert string to symbol for hash key
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- attributes = attributes.each_with_object({}) { |(k, v), h|
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- if (!self.class.attribute_map.key?(k.to_sym))
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- fail ArgumentError, "`#{k}` is not a valid attribute in `Cheminee::SubstructureSearchHit`. Please check the name to make sure it's valid. List of attributes: " + self.class.attribute_map.keys.inspect
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- end
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- h[k.to_sym] = v
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- }
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-
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- if attributes.key?(:'extra_data')
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- self.extra_data = attributes[:'extra_data']
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- else
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- self.extra_data = nil
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- end
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-
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- if attributes.key?(:'smiles')
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- self.smiles = attributes[:'smiles']
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- else
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- self.smiles = nil
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- end
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-
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- if attributes.key?(:'score')
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- self.score = attributes[:'score']
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- else
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- self.score = nil
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- end
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-
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- if attributes.key?(:'query')
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- self.query = attributes[:'query']
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- else
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- self.query = nil
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- end
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- end
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-
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- # Show invalid properties with the reasons. Usually used together with valid?
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- # @return Array for valid properties with the reasons
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- def list_invalid_properties
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- warn '[DEPRECATED] the `list_invalid_properties` method is obsolete'
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- invalid_properties = Array.new
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- if @smiles.nil?
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- invalid_properties.push('invalid value for "smiles", smiles cannot be nil.')
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- end
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-
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- if @score.nil?
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- invalid_properties.push('invalid value for "score", score cannot be nil.')
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- end
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-
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- if @query.nil?
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- invalid_properties.push('invalid value for "query", query cannot be nil.')
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- end
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-
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- invalid_properties
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- end
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-
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- # Check to see if the all the properties in the model are valid
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- # @return true if the model is valid
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- def valid?
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- warn '[DEPRECATED] the `valid?` method is obsolete'
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- return false if @smiles.nil?
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- return false if @score.nil?
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- return false if @query.nil?
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- true
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- end
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-
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- # Checks equality by comparing each attribute.
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- # @param [Object] Object to be compared
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- def ==(o)
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- return true if self.equal?(o)
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- self.class == o.class &&
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- extra_data == o.extra_data &&
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- smiles == o.smiles &&
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- score == o.score &&
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- query == o.query
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- end
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-
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- # @see the `==` method
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- # @param [Object] Object to be compared
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- def eql?(o)
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- self == o
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- end
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-
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- # Calculates hash code according to all attributes.
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- # @return [Integer] Hash code
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- def hash
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- [extra_data, smiles, score, query].hash
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- end
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-
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- # Builds the object from hash
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- # @param [Hash] attributes Model attributes in the form of hash
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- # @return [Object] Returns the model itself
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- def self.build_from_hash(attributes)
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- return nil unless attributes.is_a?(Hash)
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- attributes = attributes.transform_keys(&:to_sym)
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- transformed_hash = {}
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- openapi_types.each_pair do |key, type|
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- if attributes.key?(attribute_map[key]) && attributes[attribute_map[key]].nil?
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- transformed_hash["#{key}"] = nil
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- elsif type =~ /\AArray<(.*)>/i
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- # check to ensure the input is an array given that the attribute
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- # is documented as an array but the input is not
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- if attributes[attribute_map[key]].is_a?(Array)
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- transformed_hash["#{key}"] = attributes[attribute_map[key]].map { |v| _deserialize($1, v) }
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- end
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- elsif !attributes[attribute_map[key]].nil?
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- transformed_hash["#{key}"] = _deserialize(type, attributes[attribute_map[key]])
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- end
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- end
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- new(transformed_hash)
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- end
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-
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- # Deserializes the data based on type
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- # @param string type Data type
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- # @param string value Value to be deserialized
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- # @return [Object] Deserialized data
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- def self._deserialize(type, value)
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- case type.to_sym
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- when :Time
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- Time.parse(value)
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- when :Date
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- Date.parse(value)
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- when :String
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- value.to_s
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- when :Integer
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- value.to_i
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- when :Float
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- value.to_f
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- when :Boolean
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- if value.to_s =~ /\A(true|t|yes|y|1)\z/i
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- true
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- else
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- false
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- end
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- when :Object
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- # generic object (usually a Hash), return directly
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- value
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- when /\AArray<(?<inner_type>.+)>\z/
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- inner_type = Regexp.last_match[:inner_type]
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- value.map { |v| _deserialize(inner_type, v) }
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- when /\AHash<(?<k_type>.+?), (?<v_type>.+)>\z/
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- k_type = Regexp.last_match[:k_type]
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- v_type = Regexp.last_match[:v_type]
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- {}.tap do |hash|
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- value.each do |k, v|
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- hash[_deserialize(k_type, k)] = _deserialize(v_type, v)
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- end
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- end
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- else # model
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- # models (e.g. Pet) or oneOf
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- klass = Cheminee.const_get(type)
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- klass.respond_to?(:openapi_one_of) ? klass.build(value) : klass.build_from_hash(value)
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- end
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- end
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-
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- # Returns the string representation of the object
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- # @return [String] String presentation of the object
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- def to_s
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- to_hash.to_s
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- end
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-
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- # to_body is an alias to to_hash (backward compatibility)
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- # @return [Hash] Returns the object in the form of hash
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- def to_body
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- to_hash
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- end
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-
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- # Returns the object in the form of hash
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- # @return [Hash] Returns the object in the form of hash
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- def to_hash
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- hash = {}
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- self.class.attribute_map.each_pair do |attr, param|
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- value = self.send(attr)
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- if value.nil?
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- is_nullable = self.class.openapi_nullable.include?(attr)
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- next if !is_nullable || (is_nullable && !instance_variable_defined?(:"@#{attr}"))
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- end
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-
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- hash[param] = _to_hash(value)
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- end
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- hash
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- end
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-
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- # Outputs non-array value in the form of hash
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- # For object, use to_hash. Otherwise, just return the value
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- # @param [Object] value Any valid value
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- # @return [Hash] Returns the value in the form of hash
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- def _to_hash(value)
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- if value.is_a?(Array)
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- value.compact.map { |v| _to_hash(v) }
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- elsif value.is_a?(Hash)
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- {}.tap do |hash|
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- value.each { |k, v| hash[k] = _to_hash(v) }
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- end
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- elsif value.respond_to? :to_hash
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- value.to_hash
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- else
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- value
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- end
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- end
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-
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- end
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-
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- end
Binary file
@@ -1,42 +0,0 @@
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- =begin
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- #Cheminée
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-
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- #Cheminée: The Chemical Structure Search Engine
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-
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- The version of the OpenAPI document: 1.0
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-
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- Generated by: https://openapi-generator.tech
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- OpenAPI Generator version: 7.1.0-SNAPSHOT
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-
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- =end
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-
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- require 'spec_helper'
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- require 'json'
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- require 'date'
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-
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- # Unit tests for Cheminee::BulkRequestDoc
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- # Automatically generated by openapi-generator (https://openapi-generator.tech)
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- # Please update as you see appropriate
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- describe Cheminee::BulkRequestDoc do
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- let(:instance) { Cheminee::BulkRequestDoc.new }
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-
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- describe 'test an instance of BulkRequestDoc' do
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- it 'should create an instance of BulkRequestDoc' do
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- # uncomment below to test the instance creation
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- #expect(instance).to be_instance_of(Cheminee::BulkRequestDoc)
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- end
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- end
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-
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- describe 'test attribute "smile"' do
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- it 'should work' do
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- # assertion here. ref: https://rspec.info/features/3-12/rspec-expectations/built-in-matchers/
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- end
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- end
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-
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- describe 'test attribute "extra_data"' do
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- it 'should work' do
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- # assertion here. ref: https://rspec.info/features/3-12/rspec-expectations/built-in-matchers/
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- end
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- end
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-
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- end
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- =begin
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- #Cheminée
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-
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- #Cheminée: The Chemical Structure Search Engine
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-
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- The version of the OpenAPI document: 1.0
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-
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- Generated by: https://openapi-generator.tech
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- OpenAPI Generator version: 7.1.0-SNAPSHOT
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-
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- =end
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-
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- require 'spec_helper'
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- require 'json'
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- require 'date'
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-
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- # Unit tests for Cheminee::BulkRequest
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- # Automatically generated by openapi-generator (https://openapi-generator.tech)
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- # Please update as you see appropriate
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- describe Cheminee::BulkRequest do
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- let(:instance) { Cheminee::BulkRequest.new }
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-
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- describe 'test an instance of BulkRequest' do
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- it 'should create an instance of BulkRequest' do
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- # uncomment below to test the instance creation
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- #expect(instance).to be_instance_of(Cheminee::BulkRequest)
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- end
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- end
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-
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- describe 'test attribute "docs"' do
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- it 'should work' do
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- # assertion here. ref: https://rspec.info/features/3-12/rspec-expectations/built-in-matchers/
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- end
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- end
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-
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- end
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- =begin
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- #Cheminée
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-
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- #Cheminée: The Chemical Structure Search Engine
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-
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- The version of the OpenAPI document: 1.0
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-
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- Generated by: https://openapi-generator.tech
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- OpenAPI Generator version: 7.1.0-SNAPSHOT
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-
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- =end
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-
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- require 'spec_helper'
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- require 'json'
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- require 'date'
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-
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- # Unit tests for Cheminee::CreateIndexError
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- # Automatically generated by openapi-generator (https://openapi-generator.tech)
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- # Please update as you see appropriate
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- describe Cheminee::CreateIndexError do
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- let(:instance) { Cheminee::CreateIndexError.new }
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-
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- describe 'test an instance of CreateIndexError' do
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- it 'should create an instance of CreateIndexError' do
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- # uncomment below to test the instance creation
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- #expect(instance).to be_instance_of(Cheminee::CreateIndexError)
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- end
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- end
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-
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- describe 'test attribute "error"' do
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- it 'should work' do
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- # assertion here. ref: https://rspec.info/features/3-12/rspec-expectations/built-in-matchers/
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- end
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- end
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-
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- end
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- =begin
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- #Cheminée
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-
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- #Cheminée: The Chemical Structure Search Engine
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-
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- The version of the OpenAPI document: 1.0
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-
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- Generated by: https://openapi-generator.tech
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- OpenAPI Generator version: 7.1.0-SNAPSHOT
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-
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- =end
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-
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- require 'spec_helper'
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- require 'json'
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- require 'date'
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-
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- # Unit tests for Cheminee::GetIndexesResponseError
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- # Automatically generated by openapi-generator (https://openapi-generator.tech)
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- # Please update as you see appropriate
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- describe Cheminee::GetIndexesResponseError do
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- let(:instance) { Cheminee::GetIndexesResponseError.new }
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-
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- describe 'test an instance of GetIndexesResponseError' do
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- it 'should create an instance of GetIndexesResponseError' do
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- # uncomment below to test the instance creation
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- #expect(instance).to be_instance_of(Cheminee::GetIndexesResponseError)
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- end
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- end
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-
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- describe 'test attribute "error"' do
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- it 'should work' do
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- # assertion here. ref: https://rspec.info/features/3-12/rspec-expectations/built-in-matchers/
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- end
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- end
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-
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- end
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- =begin
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- #Cheminée
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-
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- #Cheminée: The Chemical Structure Search Engine
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-
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- The version of the OpenAPI document: 1.0
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-
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- Generated by: https://openapi-generator.tech
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- OpenAPI Generator version: 7.1.0-SNAPSHOT
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-
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- =end
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-
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- require 'spec_helper'
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- require 'json'
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- require 'date'
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-
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- # Unit tests for Cheminee::IndexMeta
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- # Automatically generated by openapi-generator (https://openapi-generator.tech)
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- # Please update as you see appropriate
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- describe Cheminee::IndexMeta do
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- let(:instance) { Cheminee::IndexMeta.new }
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-
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- describe 'test an instance of IndexMeta' do
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- it 'should create an instance of IndexMeta' do
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- # uncomment below to test the instance creation
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- #expect(instance).to be_instance_of(Cheminee::IndexMeta)
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- end
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- end
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-
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- describe 'test attribute "name"' do
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- it 'should work' do
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- # assertion here. ref: https://rspec.info/features/3-12/rspec-expectations/built-in-matchers/
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- end
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- end
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-
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- describe 'test attribute "schema"' do
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- it 'should work' do
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- # assertion here. ref: https://rspec.info/features/3-12/rspec-expectations/built-in-matchers/
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- end
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- end
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-
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- end
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- =begin
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- #Cheminée
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-
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- #Cheminée: The Chemical Structure Search Engine
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-
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- The version of the OpenAPI document: 1.0
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-
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- Generated by: https://openapi-generator.tech
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- OpenAPI Generator version: 7.3.0-SNAPSHOT
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-
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- =end
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-
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- require 'spec_helper'
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- require 'json'
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- require 'date'
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-
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- # Unit tests for Cheminee::IndexSchema
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- # Automatically generated by openapi-generator (https://openapi-generator.tech)
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- # Please update as you see appropriate
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- describe Cheminee::IndexSchema do
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- let(:instance) { Cheminee::IndexSchema.new }
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-
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- describe 'test an instance of IndexSchema' do
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- it 'should create an instance of IndexSchema' do
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- # uncomment below to test the instance creation
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- #expect(instance).to be_instance_of(Cheminee::IndexSchema)
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- end
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- end
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-
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- describe 'test attribute "index"' do
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- it 'should work' do
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- # assertion here. ref: https://rspec.info/features/3-12/rspec-expectations/built-in-matchers/
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- end
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- end
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-
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- describe 'test attribute "schema"' do
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- it 'should work' do
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- # assertion here. ref: https://rspec.info/features/3-12/rspec-expectations/built-in-matchers/
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- end
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- end
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-
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- end
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- =begin
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- #Cheminée
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-
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- #Cheminée: The Chemical Structure Search Engine
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-
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- The version of the OpenAPI document: 1.0
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-
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- Generated by: https://openapi-generator.tech
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- OpenAPI Generator version: 7.1.0-SNAPSHOT
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-
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- =end
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-
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- require 'spec_helper'
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- require 'json'
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- require 'date'
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-
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- # Unit tests for Cheminee::ListIndexResponseErr
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- # Automatically generated by openapi-generator (https://openapi-generator.tech)
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- # Please update as you see appropriate
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- describe Cheminee::ListIndexResponseErr do
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- let(:instance) { Cheminee::ListIndexResponseErr.new }
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-
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- describe 'test an instance of ListIndexResponseErr' do
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- it 'should create an instance of ListIndexResponseErr' do
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- # uncomment below to test the instance creation
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- #expect(instance).to be_instance_of(Cheminee::ListIndexResponseErr)
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- end
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- end
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-
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- describe 'test attribute "error"' do
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- it 'should work' do
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- # assertion here. ref: https://rspec.info/features/3-12/rspec-expectations/built-in-matchers/
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- end
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- end
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-
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- end
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- =begin
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- #Cheminée
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-
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- #Cheminée: The Chemical Structure Search Engine
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-
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- The version of the OpenAPI document: 1.0
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-
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- Generated by: https://openapi-generator.tech
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- OpenAPI Generator version: 7.1.0-SNAPSHOT
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-
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- =end
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-
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- require 'spec_helper'
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- require 'json'
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- require 'date'
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-
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- # Unit tests for Cheminee::PostIndexBulkResponseError
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- # Automatically generated by openapi-generator (https://openapi-generator.tech)
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- # Please update as you see appropriate
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- describe Cheminee::PostIndexBulkResponseError do
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- let(:instance) { Cheminee::PostIndexBulkResponseError.new }
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-
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- describe 'test an instance of PostIndexBulkResponseError' do
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- it 'should create an instance of PostIndexBulkResponseError' do
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- # uncomment below to test the instance creation
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- #expect(instance).to be_instance_of(Cheminee::PostIndexBulkResponseError)
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- end
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- end
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-
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- describe 'test attribute "error"' do
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- it 'should work' do
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- # assertion here. ref: https://rspec.info/features/3-12/rspec-expectations/built-in-matchers/
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- end
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- end
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-
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- end
@@ -1,36 +0,0 @@
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- =begin
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- #Cheminée
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-
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- #Cheminée: The Chemical Structure Search Engine
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-
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- The version of the OpenAPI document: 1.0
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-
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- Generated by: https://openapi-generator.tech
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- OpenAPI Generator version: 7.1.0-SNAPSHOT
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-
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- =end
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-
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- require 'spec_helper'
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- require 'json'
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- require 'date'
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-
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- # Unit tests for Cheminee::PostIndexBulkResponseOk
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- # Automatically generated by openapi-generator (https://openapi-generator.tech)
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- # Please update as you see appropriate
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- describe Cheminee::PostIndexBulkResponseOk do
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- let(:instance) { Cheminee::PostIndexBulkResponseOk.new }
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-
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- describe 'test an instance of PostIndexBulkResponseOk' do
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- it 'should create an instance of PostIndexBulkResponseOk' do
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- # uncomment below to test the instance creation
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- #expect(instance).to be_instance_of(Cheminee::PostIndexBulkResponseOk)
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- end
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- end
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-
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- describe 'test attribute "statuses"' do
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- it 'should work' do
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- # assertion here. ref: https://rspec.info/features/3-12/rspec-expectations/built-in-matchers/
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- end
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- end
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-
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- end
@@ -1,42 +0,0 @@
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- =begin
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- #Cheminée
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-
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- #Cheminée: The Chemical Structure Search Engine
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-
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- The version of the OpenAPI document: 1.0
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-
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- Generated by: https://openapi-generator.tech
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- OpenAPI Generator version: 7.1.0-SNAPSHOT
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-
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- =end
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-
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- require 'spec_helper'
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- require 'json'
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- require 'date'
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-
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- # Unit tests for Cheminee::PostIndexBulkResponseOkStatus
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- # Automatically generated by openapi-generator (https://openapi-generator.tech)
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- # Please update as you see appropriate
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- describe Cheminee::PostIndexBulkResponseOkStatus do
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- let(:instance) { Cheminee::PostIndexBulkResponseOkStatus.new }
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-
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- describe 'test an instance of PostIndexBulkResponseOkStatus' do
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- it 'should create an instance of PostIndexBulkResponseOkStatus' do
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- # uncomment below to test the instance creation
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- #expect(instance).to be_instance_of(Cheminee::PostIndexBulkResponseOkStatus)
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- end
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- end
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-
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- describe 'test attribute "opcode"' do
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- it 'should work' do
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- # assertion here. ref: https://rspec.info/features/3-12/rspec-expectations/built-in-matchers/
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- end
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- end
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-
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- describe 'test attribute "error"' do
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- it 'should work' do
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- # assertion here. ref: https://rspec.info/features/3-12/rspec-expectations/built-in-matchers/
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- end
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- end
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-
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- end
@@ -1,36 +0,0 @@
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- =begin
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- #Cheminée
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-
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- #Cheminée: The Chemical Structure Search Engine
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-
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- The version of the OpenAPI document: 1.0
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-
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- Generated by: https://openapi-generator.tech
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- OpenAPI Generator version: 7.3.0-SNAPSHOT
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-
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- =end
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-
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- require 'spec_helper'
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- require 'json'
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- require 'date'
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-
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- # Unit tests for Cheminee::QueryResponseError
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- # Automatically generated by openapi-generator (https://openapi-generator.tech)
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- # Please update as you see appropriate
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- describe Cheminee::QueryResponseError do
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- let(:instance) { Cheminee::QueryResponseError.new }
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-
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- describe 'test an instance of QueryResponseError' do
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- it 'should create an instance of QueryResponseError' do
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- # uncomment below to test the instance creation
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- #expect(instance).to be_instance_of(Cheminee::QueryResponseError)
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- end
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- end
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-
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- describe 'test attribute "error"' do
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- it 'should work' do
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- # assertion here. ref: https://rspec.info/features/3-12/rspec-expectations/built-in-matchers/
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- end
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- end
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-
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- end