cheminee 0.0.14 → 0.0.15
This diff represents the content of publicly available package versions that have been released to one of the supported registries. The information contained in this diff is provided for informational purposes only and reflects changes between package versions as they appear in their respective public registries.
- checksums.yaml +4 -4
- data/Gemfile.lock +8 -8
- data/README.md +11 -33
- data/cheminee.gemspec +1 -2
- data/docs/DefaultApi.md +16 -475
- data/lib/cheminee/api/default_api.rb +17 -481
- data/lib/cheminee/api_client.rb +21 -23
- data/lib/cheminee/api_error.rb +1 -1
- data/lib/cheminee/configuration.rb +5 -6
- data/lib/cheminee/models/smile.rb +1 -1
- data/lib/cheminee/models/standardized_smile.rb +1 -1
- data/lib/cheminee/version.rb +2 -2
- data/lib/cheminee.rb +3 -18
- data/pkg/cheminee-0.0.15.gem +0 -0
- data/spec/api_client_spec.rb +1 -1
- data/spec/configuration_spec.rb +4 -4
- data/spec/spec_helper.rb +1 -1
- metadata +3 -75
- data/docs/BulkRequest.md +0 -18
- data/docs/BulkRequestDoc.md +0 -20
- data/docs/CreateIndexError.md +0 -18
- data/docs/GetIndexesResponseError.md +0 -18
- data/docs/IndexMeta.md +0 -20
- data/docs/IndexSchema.md +0 -20
- data/docs/ListIndexResponseErr.md +0 -18
- data/docs/PostIndexBulkResponseError.md +0 -18
- data/docs/PostIndexBulkResponseOk.md +0 -18
- data/docs/PostIndexBulkResponseOkStatus.md +0 -20
- data/docs/QueryResponseError.md +0 -18
- data/docs/QuerySearchHit.md +0 -22
- data/docs/Schema.md +0 -20
- data/docs/Smiles.md +0 -18
- data/docs/StandardizedSmiles.md +0 -20
- data/docs/StructureResponseError.md +0 -18
- data/docs/StructureSearchHit.md +0 -26
- data/docs/SubstructureSearchHit.md +0 -24
- data/lib/cheminee/models/bulk_request.rb +0 -223
- data/lib/cheminee/models/bulk_request_doc.rb +0 -232
- data/lib/cheminee/models/create_index_error.rb +0 -221
- data/lib/cheminee/models/get_indexes_response_error.rb +0 -221
- data/lib/cheminee/models/index_meta.rb +0 -237
- data/lib/cheminee/models/index_schema.rb +0 -233
- data/lib/cheminee/models/list_index_response_err.rb +0 -221
- data/lib/cheminee/models/post_index_bulk_response_error.rb +0 -221
- data/lib/cheminee/models/post_index_bulk_response_ok.rb +0 -223
- data/lib/cheminee/models/post_index_bulk_response_ok_status.rb +0 -223
- data/lib/cheminee/models/query_response_error.rb +0 -221
- data/lib/cheminee/models/query_search_hit.rb +0 -249
- data/lib/cheminee/models/schema.rb +0 -233
- data/lib/cheminee/models/smiles.rb +0 -221
- data/lib/cheminee/models/standardized_smiles.rb +0 -223
- data/lib/cheminee/models/structure_response_error.rb +0 -221
- data/lib/cheminee/models/structure_search_hit.rb +0 -281
- data/lib/cheminee/models/substructure_search_hit.rb +0 -265
- data/pkg/cheminee-0.0.14.gem +0 -0
- data/spec/models/bulk_request_doc_spec.rb +0 -42
- data/spec/models/bulk_request_spec.rb +0 -36
- data/spec/models/create_index_error_spec.rb +0 -36
- data/spec/models/get_indexes_response_error_spec.rb +0 -36
- data/spec/models/index_meta_spec.rb +0 -42
- data/spec/models/index_schema_spec.rb +0 -42
- data/spec/models/list_index_response_err_spec.rb +0 -36
- data/spec/models/post_index_bulk_response_error_spec.rb +0 -36
- data/spec/models/post_index_bulk_response_ok_spec.rb +0 -36
- data/spec/models/post_index_bulk_response_ok_status_spec.rb +0 -42
- data/spec/models/query_response_error_spec.rb +0 -36
- data/spec/models/query_search_hit_spec.rb +0 -48
- data/spec/models/schema_spec.rb +0 -42
- data/spec/models/smiles_spec.rb +0 -36
- data/spec/models/standardized_smiles_spec.rb +0 -42
- data/spec/models/structure_response_error_spec.rb +0 -36
- data/spec/models/structure_search_hit_spec.rb +0 -60
- data/spec/models/substructure_search_hit_spec.rb +0 -54
@@ -6,7 +6,7 @@
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The version of the OpenAPI document: 1.0
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Generated by: https://openapi-generator.tech
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OpenAPI Generator version: 7.
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OpenAPI Generator version: 7.0.0-SNAPSHOT
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=end
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@@ -19,491 +19,27 @@ module Cheminee
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def initialize(api_client = ApiClient.default)
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@api_client = api_client
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end
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#
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# @param smile [Array<Smile>]
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# @param [Hash] opts the optional parameters
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# @return [Array<
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def
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data, _status_code, _headers =
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# @return [Array<StandardizedSmile>]
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def standardize_post(smile, opts = {})
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data, _status_code, _headers = standardize_post_with_http_info(smile, opts)
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data
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end
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#
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# @param smile [Array<Smile>]
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# @param [Hash] opts the optional parameters
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# @return [Array<(Array<
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def
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# @return [Array<(Array<StandardizedSmile>, Integer, Hash)>] Array<StandardizedSmile> data, response status code and response headers
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def standardize_post_with_http_info(smile, opts = {})
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if @api_client.config.debugging
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@api_client.config.logger.debug 'Calling API: DefaultApi.
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@api_client.config.logger.debug 'Calling API: DefaultApi.standardize_post ...'
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end
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#
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# query parameters
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query_params = opts[:query_params] || {}
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# header parameters
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header_params = opts[:header_params] || {}
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# HTTP header 'Accept' (if needed)
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header_params['Accept'] = @api_client.select_header_accept(['application/json; charset=utf-8'])
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# form parameters
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form_params = opts[:form_params] || {}
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# http body (model)
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post_body = opts[:debug_body]
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# return_type
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return_type = opts[:debug_return_type] || 'Array<IndexMeta>'
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# auth_names
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auth_names = opts[:debug_auth_names] || []
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new_options = opts.merge(
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:operation => :"DefaultApi.v1_indexes_get",
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:header_params => header_params,
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:query_params => query_params,
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:form_params => form_params,
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:body => post_body,
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:auth_names => auth_names,
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:return_type => return_type
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)
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data, status_code, headers = @api_client.call_api(:GET, local_var_path, new_options)
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if @api_client.config.debugging
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@api_client.config.logger.debug "API called: DefaultApi#v1_indexes_get\nData: #{data.inspect}\nStatus code: #{status_code}\nHeaders: #{headers}"
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end
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return data, status_code, headers
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end
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# Index a list of SMILES and associated, free-form JSON attributes which are indexed and searchable
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# @param index [String]
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# @param bulk_request [BulkRequest]
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# @param [Hash] opts the optional parameters
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# @return [PostIndexBulkResponseOk]
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def v1_indexes_index_bulk_index_post(index, bulk_request, opts = {})
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data, _status_code, _headers = v1_indexes_index_bulk_index_post_with_http_info(index, bulk_request, opts)
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data
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end
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# Index a list of SMILES and associated, free-form JSON attributes which are indexed and searchable
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# @param index [String]
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# @param bulk_request [BulkRequest]
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# @param [Hash] opts the optional parameters
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# @return [Array<(PostIndexBulkResponseOk, Integer, Hash)>] PostIndexBulkResponseOk data, response status code and response headers
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def v1_indexes_index_bulk_index_post_with_http_info(index, bulk_request, opts = {})
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if @api_client.config.debugging
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@api_client.config.logger.debug 'Calling API: DefaultApi.v1_indexes_index_bulk_index_post ...'
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end
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# verify the required parameter 'index' is set
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if @api_client.config.client_side_validation && index.nil?
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fail ArgumentError, "Missing the required parameter 'index' when calling DefaultApi.v1_indexes_index_bulk_index_post"
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end
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# verify the required parameter 'bulk_request' is set
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if @api_client.config.client_side_validation && bulk_request.nil?
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fail ArgumentError, "Missing the required parameter 'bulk_request' when calling DefaultApi.v1_indexes_index_bulk_index_post"
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end
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# resource path
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local_var_path = '/v1/indexes/{index}/bulk_index'.sub('{' + 'index' + '}', CGI.escape(index.to_s))
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# query parameters
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query_params = opts[:query_params] || {}
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# header parameters
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header_params = opts[:header_params] || {}
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# HTTP header 'Accept' (if needed)
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header_params['Accept'] = @api_client.select_header_accept(['application/json; charset=utf-8'])
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# HTTP header 'Content-Type'
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content_type = @api_client.select_header_content_type(['application/json; charset=utf-8'])
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if !content_type.nil?
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header_params['Content-Type'] = content_type
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end
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# form parameters
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form_params = opts[:form_params] || {}
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# http body (model)
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post_body = opts[:debug_body] || @api_client.object_to_http_body(bulk_request)
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# return_type
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return_type = opts[:debug_return_type] || 'PostIndexBulkResponseOk'
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# auth_names
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auth_names = opts[:debug_auth_names] || []
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new_options = opts.merge(
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:operation => :"DefaultApi.v1_indexes_index_bulk_index_post",
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:header_params => header_params,
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:query_params => query_params,
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:form_params => form_params,
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:body => post_body,
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:auth_names => auth_names,
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:return_type => return_type
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)
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data, status_code, headers = @api_client.call_api(:POST, local_var_path, new_options)
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if @api_client.config.debugging
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@api_client.config.logger.debug "API called: DefaultApi#v1_indexes_index_bulk_index_post\nData: #{data.inspect}\nStatus code: #{status_code}\nHeaders: #{headers}"
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end
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return data, status_code, headers
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end
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# Get extended information about an index
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# @param index [String]
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# @param [Hash] opts the optional parameters
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# @return [IndexSchema]
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def v1_indexes_index_get(index, opts = {})
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data, _status_code, _headers = v1_indexes_index_get_with_http_info(index, opts)
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end
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# Get extended information about an index
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# @return [Array<(IndexSchema, Integer, Hash)>] IndexSchema data, response status code and response headers
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def v1_indexes_index_get_with_http_info(index, opts = {})
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@api_client.config.logger.debug 'Calling API: DefaultApi.v1_indexes_index_get ...'
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end
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# verify the required parameter 'index' is set
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if @api_client.config.client_side_validation && index.nil?
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fail ArgumentError, "Missing the required parameter 'index' when calling DefaultApi.v1_indexes_index_get"
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end
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# resource path
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local_var_path = '/v1/indexes/{index}'.sub('{' + 'index' + '}', CGI.escape(index.to_s))
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# query parameters
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header_params = opts[:header_params] || {}
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header_params['Accept'] = @api_client.select_header_accept(['application/json; charset=utf-8'])
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# form parameters
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form_params = opts[:form_params] || {}
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# http body (model)
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post_body = opts[:debug_body]
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# return_type
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return_type = opts[:debug_return_type] || 'IndexSchema'
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# auth_names
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new_options = opts.merge(
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:operation => :"DefaultApi.v1_indexes_index_get",
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:header_params => header_params,
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:query_params => query_params,
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:form_params => form_params,
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data, status_code, headers = @api_client.call_api(:GET, local_var_path, new_options)
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@api_client.config.logger.debug "API called: DefaultApi#v1_indexes_index_get\nData: #{data.inspect}\nStatus code: #{status_code}\nHeaders: #{headers}"
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end
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return data, status_code, headers
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end
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def v1_indexes_index_post(index, schema, opts = {})
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data, _status_code, _headers = v1_indexes_index_post_with_http_info(index, schema, opts)
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end
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def v1_indexes_index_post_with_http_info(index, schema, opts = {})
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@api_client.config.logger.debug 'Calling API: DefaultApi.v1_indexes_index_post ...'
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end
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fail ArgumentError, "Missing the required parameter 'index' when calling DefaultApi.v1_indexes_index_post"
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end
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fail ArgumentError, "Missing the required parameter 'schema' when calling DefaultApi.v1_indexes_index_post"
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end
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# resource path
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# header parameters
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end
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end
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# Perform basic query search against index
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|
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# @param query [String]
|
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# @param [Hash] opts the optional parameters
|
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# @option opts [Integer] :limit
|
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# @return [Array<QuerySearchHit>]
|
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-
def v1_indexes_index_search_basic_get(index, query, opts = {})
|
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|
-
data, _status_code, _headers = v1_indexes_index_search_basic_get_with_http_info(index, query, opts)
|
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|
-
data
|
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|
-
end
|
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|
-
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# Perform basic query search against index
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# @param query [String]
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# @param [Hash] opts the optional parameters
|
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# @option opts [Integer] :limit
|
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|
-
# @return [Array<(Array<QuerySearchHit>, Integer, Hash)>] Array<QuerySearchHit> data, response status code and response headers
|
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|
-
def v1_indexes_index_search_basic_get_with_http_info(index, query, opts = {})
|
299
|
-
if @api_client.config.debugging
|
300
|
-
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|
301
|
-
end
|
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# verify the required parameter 'index' is set
|
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-
if @api_client.config.client_side_validation && index.nil?
|
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-
fail ArgumentError, "Missing the required parameter 'index' when calling DefaultApi.v1_indexes_index_search_basic_get"
|
305
|
-
end
|
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# verify the required parameter 'query' is set
|
307
|
-
if @api_client.config.client_side_validation && query.nil?
|
308
|
-
fail ArgumentError, "Missing the required parameter 'query' when calling DefaultApi.v1_indexes_index_search_basic_get"
|
309
|
-
end
|
310
|
-
# resource path
|
311
|
-
local_var_path = '/v1/indexes/{index}/search/basic'.sub('{' + 'index' + '}', CGI.escape(index.to_s))
|
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-
|
313
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# query parameters
|
314
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-
query_params = opts[:query_params] || {}
|
315
|
-
query_params[:'query'] = query
|
316
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-
query_params[:'limit'] = opts[:'limit'] if !opts[:'limit'].nil?
|
317
|
-
|
318
|
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# header parameters
|
319
|
-
header_params = opts[:header_params] || {}
|
320
|
-
# HTTP header 'Accept' (if needed)
|
321
|
-
header_params['Accept'] = @api_client.select_header_accept(['application/json; charset=utf-8'])
|
322
|
-
|
323
|
-
# form parameters
|
324
|
-
form_params = opts[:form_params] || {}
|
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-
|
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-
# http body (model)
|
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-
post_body = opts[:debug_body]
|
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|
-
|
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|
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# return_type
|
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|
-
return_type = opts[:debug_return_type] || 'Array<QuerySearchHit>'
|
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|
-
|
332
|
-
# auth_names
|
333
|
-
auth_names = opts[:debug_auth_names] || []
|
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-
|
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-
new_options = opts.merge(
|
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:operation => :"DefaultApi.v1_indexes_index_search_basic_get",
|
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:header_params => header_params,
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:query_params => query_params,
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:form_params => form_params,
|
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-
:body => post_body,
|
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-
:auth_names => auth_names,
|
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-
:return_type => return_type
|
343
|
-
)
|
344
|
-
|
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|
-
data, status_code, headers = @api_client.call_api(:GET, local_var_path, new_options)
|
346
|
-
if @api_client.config.debugging
|
347
|
-
@api_client.config.logger.debug "API called: DefaultApi#v1_indexes_index_search_basic_get\nData: #{data.inspect}\nStatus code: #{status_code}\nHeaders: #{headers}"
|
348
|
-
end
|
349
|
-
return data, status_code, headers
|
350
|
-
end
|
351
|
-
|
352
|
-
# Perform substructure search against index
|
353
|
-
# @param index [String]
|
354
|
-
# @param smiles [String]
|
355
|
-
# @param [Hash] opts the optional parameters
|
356
|
-
# @option opts [Integer] :result_limit
|
357
|
-
# @option opts [Integer] :tautomer_limit
|
358
|
-
# @option opts [String] :extra_query
|
359
|
-
# @return [Array<StructureSearchHit>]
|
360
|
-
def v1_indexes_index_search_substructure_get(index, smiles, opts = {})
|
361
|
-
data, _status_code, _headers = v1_indexes_index_search_substructure_get_with_http_info(index, smiles, opts)
|
362
|
-
data
|
363
|
-
end
|
364
|
-
|
365
|
-
# Perform substructure search against index
|
366
|
-
# @param index [String]
|
367
|
-
# @param smiles [String]
|
368
|
-
# @param [Hash] opts the optional parameters
|
369
|
-
# @option opts [Integer] :result_limit
|
370
|
-
# @option opts [Integer] :tautomer_limit
|
371
|
-
# @option opts [String] :extra_query
|
372
|
-
# @return [Array<(Array<StructureSearchHit>, Integer, Hash)>] Array<StructureSearchHit> data, response status code and response headers
|
373
|
-
def v1_indexes_index_search_substructure_get_with_http_info(index, smiles, opts = {})
|
374
|
-
if @api_client.config.debugging
|
375
|
-
@api_client.config.logger.debug 'Calling API: DefaultApi.v1_indexes_index_search_substructure_get ...'
|
376
|
-
end
|
377
|
-
# verify the required parameter 'index' is set
|
378
|
-
if @api_client.config.client_side_validation && index.nil?
|
379
|
-
fail ArgumentError, "Missing the required parameter 'index' when calling DefaultApi.v1_indexes_index_search_substructure_get"
|
380
|
-
end
|
381
|
-
# verify the required parameter 'smiles' is set
|
382
|
-
if @api_client.config.client_side_validation && smiles.nil?
|
383
|
-
fail ArgumentError, "Missing the required parameter 'smiles' when calling DefaultApi.v1_indexes_index_search_substructure_get"
|
384
|
-
end
|
385
|
-
# resource path
|
386
|
-
local_var_path = '/v1/indexes/{index}/search/substructure'.sub('{' + 'index' + '}', CGI.escape(index.to_s))
|
387
|
-
|
388
|
-
# query parameters
|
389
|
-
query_params = opts[:query_params] || {}
|
390
|
-
query_params[:'smiles'] = smiles
|
391
|
-
query_params[:'result_limit'] = opts[:'result_limit'] if !opts[:'result_limit'].nil?
|
392
|
-
query_params[:'tautomer_limit'] = opts[:'tautomer_limit'] if !opts[:'tautomer_limit'].nil?
|
393
|
-
query_params[:'extra_query'] = opts[:'extra_query'] if !opts[:'extra_query'].nil?
|
394
|
-
|
395
|
-
# header parameters
|
396
|
-
header_params = opts[:header_params] || {}
|
397
|
-
# HTTP header 'Accept' (if needed)
|
398
|
-
header_params['Accept'] = @api_client.select_header_accept(['application/json; charset=utf-8'])
|
399
|
-
|
400
|
-
# form parameters
|
401
|
-
form_params = opts[:form_params] || {}
|
402
|
-
|
403
|
-
# http body (model)
|
404
|
-
post_body = opts[:debug_body]
|
405
|
-
|
406
|
-
# return_type
|
407
|
-
return_type = opts[:debug_return_type] || 'Array<StructureSearchHit>'
|
408
|
-
|
409
|
-
# auth_names
|
410
|
-
auth_names = opts[:debug_auth_names] || []
|
411
|
-
|
412
|
-
new_options = opts.merge(
|
413
|
-
:operation => :"DefaultApi.v1_indexes_index_search_substructure_get",
|
414
|
-
:header_params => header_params,
|
415
|
-
:query_params => query_params,
|
416
|
-
:form_params => form_params,
|
417
|
-
:body => post_body,
|
418
|
-
:auth_names => auth_names,
|
419
|
-
:return_type => return_type
|
420
|
-
)
|
421
|
-
|
422
|
-
data, status_code, headers = @api_client.call_api(:GET, local_var_path, new_options)
|
423
|
-
if @api_client.config.debugging
|
424
|
-
@api_client.config.logger.debug "API called: DefaultApi#v1_indexes_index_search_substructure_get\nData: #{data.inspect}\nStatus code: #{status_code}\nHeaders: #{headers}"
|
425
|
-
end
|
426
|
-
return data, status_code, headers
|
427
|
-
end
|
428
|
-
|
429
|
-
# List schemas available for creating indexes
|
430
|
-
# @param [Hash] opts the optional parameters
|
431
|
-
# @return [Array<Schema>]
|
432
|
-
def v1_schemas_get(opts = {})
|
433
|
-
data, _status_code, _headers = v1_schemas_get_with_http_info(opts)
|
434
|
-
data
|
435
|
-
end
|
436
|
-
|
437
|
-
# List schemas available for creating indexes
|
438
|
-
# @param [Hash] opts the optional parameters
|
439
|
-
# @return [Array<(Array<Schema>, Integer, Hash)>] Array<Schema> data, response status code and response headers
|
440
|
-
def v1_schemas_get_with_http_info(opts = {})
|
441
|
-
if @api_client.config.debugging
|
442
|
-
@api_client.config.logger.debug 'Calling API: DefaultApi.v1_schemas_get ...'
|
443
|
-
end
|
444
|
-
# resource path
|
445
|
-
local_var_path = '/v1/schemas'
|
446
|
-
|
447
|
-
# query parameters
|
448
|
-
query_params = opts[:query_params] || {}
|
449
|
-
|
450
|
-
# header parameters
|
451
|
-
header_params = opts[:header_params] || {}
|
452
|
-
# HTTP header 'Accept' (if needed)
|
453
|
-
header_params['Accept'] = @api_client.select_header_accept(['application/json; charset=utf-8'])
|
454
|
-
|
455
|
-
# form parameters
|
456
|
-
form_params = opts[:form_params] || {}
|
457
|
-
|
458
|
-
# http body (model)
|
459
|
-
post_body = opts[:debug_body]
|
460
|
-
|
461
|
-
# return_type
|
462
|
-
return_type = opts[:debug_return_type] || 'Array<Schema>'
|
463
|
-
|
464
|
-
# auth_names
|
465
|
-
auth_names = opts[:debug_auth_names] || []
|
466
|
-
|
467
|
-
new_options = opts.merge(
|
468
|
-
:operation => :"DefaultApi.v1_schemas_get",
|
469
|
-
:header_params => header_params,
|
470
|
-
:query_params => query_params,
|
471
|
-
:form_params => form_params,
|
472
|
-
:body => post_body,
|
473
|
-
:auth_names => auth_names,
|
474
|
-
:return_type => return_type
|
475
|
-
)
|
476
|
-
|
477
|
-
data, status_code, headers = @api_client.call_api(:GET, local_var_path, new_options)
|
478
|
-
if @api_client.config.debugging
|
479
|
-
@api_client.config.logger.debug "API called: DefaultApi#v1_schemas_get\nData: #{data.inspect}\nStatus code: #{status_code}\nHeaders: #{headers}"
|
480
|
-
end
|
481
|
-
return data, status_code, headers
|
482
|
-
end
|
483
|
-
|
484
|
-
# Pass a list of SMILES through fragment_parent, uncharger, and canonicalization routines
|
485
|
-
# @param smiles [Array<Smiles>]
|
486
|
-
# @param [Hash] opts the optional parameters
|
487
|
-
# @return [Array<StandardizedSmiles>]
|
488
|
-
def v1_standardize_post(smiles, opts = {})
|
489
|
-
data, _status_code, _headers = v1_standardize_post_with_http_info(smiles, opts)
|
490
|
-
data
|
491
|
-
end
|
492
|
-
|
493
|
-
# Pass a list of SMILES through fragment_parent, uncharger, and canonicalization routines
|
494
|
-
# @param smiles [Array<Smiles>]
|
495
|
-
# @param [Hash] opts the optional parameters
|
496
|
-
# @return [Array<(Array<StandardizedSmiles>, Integer, Hash)>] Array<StandardizedSmiles> data, response status code and response headers
|
497
|
-
def v1_standardize_post_with_http_info(smiles, opts = {})
|
498
|
-
if @api_client.config.debugging
|
499
|
-
@api_client.config.logger.debug 'Calling API: DefaultApi.v1_standardize_post ...'
|
500
|
-
end
|
501
|
-
# verify the required parameter 'smiles' is set
|
502
|
-
if @api_client.config.client_side_validation && smiles.nil?
|
503
|
-
fail ArgumentError, "Missing the required parameter 'smiles' when calling DefaultApi.v1_standardize_post"
|
37
|
+
# verify the required parameter 'smile' is set
|
38
|
+
if @api_client.config.client_side_validation && smile.nil?
|
39
|
+
fail ArgumentError, "Missing the required parameter 'smile' when calling DefaultApi.standardize_post"
|
504
40
|
end
|
505
41
|
# resource path
|
506
|
-
local_var_path = '/
|
42
|
+
local_var_path = '/standardize'
|
507
43
|
|
508
44
|
# query parameters
|
509
45
|
query_params = opts[:query_params] || {}
|
@@ -522,16 +58,16 @@ module Cheminee
|
|
522
58
|
form_params = opts[:form_params] || {}
|
523
59
|
|
524
60
|
# http body (model)
|
525
|
-
post_body = opts[:debug_body] || @api_client.object_to_http_body(
|
61
|
+
post_body = opts[:debug_body] || @api_client.object_to_http_body(smile)
|
526
62
|
|
527
63
|
# return_type
|
528
|
-
return_type = opts[:debug_return_type] || 'Array<
|
64
|
+
return_type = opts[:debug_return_type] || 'Array<StandardizedSmile>'
|
529
65
|
|
530
66
|
# auth_names
|
531
67
|
auth_names = opts[:debug_auth_names] || []
|
532
68
|
|
533
69
|
new_options = opts.merge(
|
534
|
-
:operation => :"DefaultApi.
|
70
|
+
:operation => :"DefaultApi.standardize_post",
|
535
71
|
:header_params => header_params,
|
536
72
|
:query_params => query_params,
|
537
73
|
:form_params => form_params,
|
@@ -542,7 +78,7 @@ module Cheminee
|
|
542
78
|
|
543
79
|
data, status_code, headers = @api_client.call_api(:POST, local_var_path, new_options)
|
544
80
|
if @api_client.config.debugging
|
545
|
-
@api_client.config.logger.debug "API called: DefaultApi#
|
81
|
+
@api_client.config.logger.debug "API called: DefaultApi#standardize_post\nData: #{data.inspect}\nStatus code: #{status_code}\nHeaders: #{headers}"
|
546
82
|
end
|
547
83
|
return data, status_code, headers
|
548
84
|
end
|
data/lib/cheminee/api_client.rb
CHANGED
@@ -6,7 +6,7 @@
|
|
6
6
|
The version of the OpenAPI document: 1.0
|
7
7
|
|
8
8
|
Generated by: https://openapi-generator.tech
|
9
|
-
OpenAPI Generator version: 7.
|
9
|
+
OpenAPI Generator version: 7.0.0-SNAPSHOT
|
10
10
|
|
11
11
|
=end
|
12
12
|
|
@@ -17,7 +17,6 @@ require 'tempfile'
|
|
17
17
|
require 'time'
|
18
18
|
require 'typhoeus'
|
19
19
|
|
20
|
-
|
21
20
|
module Cheminee
|
22
21
|
class ApiClient
|
23
22
|
# The Configuration object holding settings to be used in the API client.
|
@@ -46,10 +45,9 @@ module Cheminee
|
|
46
45
|
# Call an API with given options.
|
47
46
|
#
|
48
47
|
# @return [Array<(Object, Integer, Hash)>] an array of 3 elements:
|
49
|
-
# the data deserialized from response body (
|
48
|
+
# the data deserialized from response body (could be nil), response status code and response headers.
|
50
49
|
def call_api(http_method, path, opts = {})
|
51
50
|
request = build_request(http_method, path, opts)
|
52
|
-
tempfile = download_file(request) if opts[:return_type] == 'File'
|
53
51
|
response = request.run
|
54
52
|
|
55
53
|
if @config.debugging
|
@@ -71,9 +69,7 @@ module Cheminee
|
|
71
69
|
end
|
72
70
|
end
|
73
71
|
|
74
|
-
if opts[:return_type]
|
75
|
-
data = tempfile
|
76
|
-
elsif opts[:return_type]
|
72
|
+
if opts[:return_type]
|
77
73
|
data = deserialize(response, opts[:return_type])
|
78
74
|
else
|
79
75
|
data = nil
|
@@ -128,7 +124,9 @@ module Cheminee
|
|
128
124
|
end
|
129
125
|
end
|
130
126
|
|
131
|
-
Typhoeus::Request.new(url, req_opts)
|
127
|
+
request = Typhoeus::Request.new(url, req_opts)
|
128
|
+
download_file(request) if opts[:return_type] == 'File'
|
129
|
+
request
|
132
130
|
end
|
133
131
|
|
134
132
|
# Builds the HTTP request body
|
@@ -166,8 +164,6 @@ module Cheminee
|
|
166
164
|
# process can use.
|
167
165
|
#
|
168
166
|
# @see Configuration#temp_folder_path
|
169
|
-
#
|
170
|
-
# @return [Tempfile] the tempfile generated
|
171
167
|
def download_file(request)
|
172
168
|
tempfile = nil
|
173
169
|
encoding = nil
|
@@ -182,24 +178,21 @@ module Cheminee
|
|
182
178
|
prefix = prefix + '-' unless prefix.end_with?('-')
|
183
179
|
encoding = response.body.encoding
|
184
180
|
tempfile = Tempfile.open(prefix, @config.temp_folder_path, encoding: encoding)
|
181
|
+
@tempfile = tempfile
|
185
182
|
end
|
186
183
|
request.on_body do |chunk|
|
187
184
|
chunk.force_encoding(encoding)
|
188
185
|
tempfile.write(chunk)
|
189
186
|
end
|
190
|
-
|
191
|
-
|
192
|
-
|
193
|
-
|
194
|
-
|
195
|
-
|
196
|
-
|
197
|
-
|
198
|
-
else
|
199
|
-
fail ApiError.new("Failed to create the tempfile based on the HTTP response from the server: #{request.inspect}")
|
187
|
+
request.on_complete do |response|
|
188
|
+
if tempfile
|
189
|
+
tempfile.close
|
190
|
+
@config.logger.info "Temp file written to #{tempfile.path}, please copy the file to a proper folder "\
|
191
|
+
"with e.g. `FileUtils.cp(tempfile.path, '/new/file/path')` otherwise the temp file "\
|
192
|
+
"will be deleted automatically with GC. It's also recommended to delete the temp file "\
|
193
|
+
"explicitly with `tempfile.delete`"
|
194
|
+
end
|
200
195
|
end
|
201
|
-
|
202
|
-
tempfile
|
203
196
|
end
|
204
197
|
|
205
198
|
# Check if the given MIME is a JSON MIME.
|
@@ -220,10 +213,15 @@ module Cheminee
|
|
220
213
|
# @param [String] return_type some examples: "User", "Array<User>", "Hash<String, Integer>"
|
221
214
|
def deserialize(response, return_type)
|
222
215
|
body = response.body
|
216
|
+
|
217
|
+
# handle file downloading - return the File instance processed in request callbacks
|
218
|
+
# note that response body is empty when the file is written in chunks in request on_body callback
|
219
|
+
return @tempfile if return_type == 'File'
|
220
|
+
|
223
221
|
return nil if body.nil? || body.empty?
|
224
222
|
|
225
223
|
# return response body directly for String return type
|
226
|
-
return body
|
224
|
+
return body if return_type == 'String'
|
227
225
|
|
228
226
|
# ensuring a default content type
|
229
227
|
content_type = response.headers['Content-Type'] || 'application/json'
|