caruby-tissue 1.2.2 → 1.2.3
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- data/History.txt +4 -0
- data/bin/crtdump +11 -3
- data/bin/{seed → crtseed} +0 -0
- data/conf/annotation/pathology_scg/AdditionalFinding.hbm.xml +19 -0
- data/conf/annotation/pathology_scg/BasePathologyAnnotation.hbm.xml +260 -0
- data/conf/annotation/pathology_scg/BreastMargin.hbm.xml +21 -0
- data/conf/annotation/pathology_scg/BreastMarginInvolved.hbm.xml +15 -0
- data/conf/annotation/pathology_scg/BreastMarginUninvolved.hbm.xml +14 -0
- data/conf/annotation/pathology_scg/CNSMargin.hbm.xml +19 -0
- data/conf/annotation/pathology_scg/CNSMarginLocation.hbm.xml +14 -0
- data/conf/annotation/pathology_scg/CarcinomaInSituStatus.hbm.xml +14 -0
- data/conf/annotation/pathology_scg/ColorectalLocalExcisionMarginUninvolved.hbm.xml +15 -0
- data/conf/annotation/pathology_scg/ColorectalResectedMarginUninvolved.hbm.xml +22 -0
- data/conf/annotation/pathology_scg/Cytogenetics.hbm.xml +15 -0
- data/conf/annotation/pathology_scg/DeepMelanomaMargin.hbm.xml +16 -0
- data/conf/annotation/pathology_scg/Details.hbm.xml +14 -0
- data/conf/annotation/pathology_scg/DirectExtensionOfTumor.hbm.xml +14 -0
- data/conf/annotation/pathology_scg/DistalMargin.hbm.xml +15 -0
- data/conf/annotation/pathology_scg/DistanceFromAnalVerge.hbm.xml +23 -0
- data/conf/annotation/pathology_scg/DistantMetastasis.hbm.xml +19 -0
- data/conf/annotation/pathology_scg/ExcionalBiopsyMarginUninvolved.hbm.xml +15 -0
- data/conf/annotation/pathology_scg/ExcisionalBiopsyColorectalDeepMargin.hbm.xml +15 -0
- data/conf/annotation/pathology_scg/ExcisionalBiopsyColorectalLateralOrMucosalMargin.hbm.xml +15 -0
- data/conf/annotation/pathology_scg/ExtraprostaticExtension.hbm.xml +20 -0
- data/conf/annotation/pathology_scg/ExtraprostaticExtensionTissueSites.hbm.xml +14 -0
- data/conf/annotation/pathology_scg/GleasonScore.hbm.xml +16 -0
- data/conf/annotation/pathology_scg/HistologicGrade.hbm.xml +16 -0
- data/conf/annotation/pathology_scg/HistologicType.hbm.xml +19 -0
- data/conf/annotation/pathology_scg/HistologicVariantType.hbm.xml +14 -0
- data/conf/annotation/pathology_scg/ImmunoPhenotyping.hbm.xml +16 -0
- data/conf/annotation/pathology_scg/Invasion.hbm.xml +16 -0
- data/conf/annotation/pathology_scg/KidneyMarginLocation.hbm.xml +15 -0
- data/conf/annotation/pathology_scg/KidneyNephrectomyMargin.hbm.xml +19 -0
- data/conf/annotation/pathology_scg/LateralMelanomaMargin.hbm.xml +16 -0
- data/conf/annotation/pathology_scg/LocalExcisionColorectalDeepMargin.hbm.xml +15 -0
- data/conf/annotation/pathology_scg/LocalExcisionColorectalLateralMargin.hbm.xml +20 -0
- data/conf/annotation/pathology_scg/LungResectionMargin.hbm.xml +17 -0
- data/conf/annotation/pathology_scg/LungResectionMarginsUninvolved.hbm.xml +14 -0
- data/conf/annotation/pathology_scg/MacroscopicExtentOfTumor.hbm.xml +14 -0
- data/conf/annotation/pathology_scg/MesentricMargin.hbm.xml +15 -0
- data/conf/annotation/pathology_scg/MetastasisTissueSite.hbm.xml +15 -0
- data/conf/annotation/pathology_scg/Microcalcification.hbm.xml +14 -0
- data/conf/annotation/pathology_scg/NottinghamHistologicScore.hbm.xml +17 -0
- data/conf/annotation/pathology_scg/OtherResectedOrgans.hbm.xml +15 -0
- data/conf/annotation/pathology_scg/PancreasMargin.hbm.xml +20 -0
- data/conf/annotation/pathology_scg/PancreasMarginInvolvedByInvasiveCarcinoma.hbm.xml +15 -0
- data/conf/annotation/pathology_scg/PancreasMarginUninvolvedByInvasiveCarcinoma.hbm.xml +20 -0
- data/conf/annotation/pathology_scg/PathologicalStaging.hbm.xml +16 -0
- data/conf/annotation/pathology_scg/PolypConfiguration.hbm.xml +15 -0
- data/conf/annotation/pathology_scg/PrimaryTumorStage.hbm.xml +14 -0
- data/conf/annotation/pathology_scg/ProstateMarginLocation.hbm.xml +15 -0
- data/conf/annotation/pathology_scg/ProximalMargin.hbm.xml +15 -0
- data/conf/annotation/pathology_scg/RadialMargin.hbm.xml +15 -0
- data/conf/annotation/pathology_scg/RadicalProstatectomyMargin.hbm.xml +20 -0
- data/conf/annotation/pathology_scg/RegionalLymphNode.hbm.xml +19 -0
- data/conf/annotation/pathology_scg/SatelliteNodule.hbm.xml +14 -0
- data/conf/annotation/pathology_scg/SpecimenCollectionGroup.hbm.xml +87 -0
- data/conf/annotation/pathology_scg/SpecimenIntegrity.hbm.xml +15 -0
- data/conf/annotation/pathology_scg/SpecimenSize.hbm.xml +17 -0
- data/conf/annotation/pathology_scg/TissueSide.hbm.xml +14 -0
- data/conf/annotation/pathology_scg/TumorSize.hbm.xml +29 -0
- data/conf/annotation/pathology_scg/TumorTissueSite.hbm.xml +20 -0
- data/conf/annotation/pathology_scg/UninvolvedMelanomaMargin.hbm.xml +15 -0
- data/conf/annotation/pathology_specimen/AdditionalFinding.hbm.xml +19 -0
- data/conf/annotation/pathology_specimen/AdditionalPathologicFinding.hbm.xml +18 -0
- data/conf/annotation/pathology_specimen/Details.hbm.xml +15 -0
- data/conf/annotation/pathology_specimen/GleasonScore.hbm.xml +16 -0
- data/conf/annotation/pathology_specimen/HistologicGrade.hbm.xml +16 -0
- data/conf/annotation/pathology_specimen/HistologicType.hbm.xml +19 -0
- data/conf/annotation/pathology_specimen/HistologicVariantType.hbm.xml +14 -0
- data/conf/annotation/pathology_specimen/Invasion.hbm.xml +16 -0
- data/conf/annotation/pathology_specimen/NottinghamHistologicScore.hbm.xml +17 -0
- data/conf/annotation/pathology_specimen/Specimen.hbm.xml +52 -0
- data/conf/annotation/pathology_specimen/SpecimenBaseSolidTissuePathologyAnnotation.hbm.xml +73 -0
- data/examples/galena/lib/galena/cli/seed.rb +0 -21
- data/examples/galena/lib/galena/migration/frozen_shims.rb +6 -5
- data/examples/galena/lib/galena/seed/defaults.rb +0 -5
- data/{lib → examples/galena/lib}/galena.rb +0 -0
- data/lib/catissue/annotation/annotatable.rb +37 -0
- data/lib/catissue/annotation/annotatable_class.rb +255 -0
- data/lib/catissue/annotation/annotation.rb +49 -0
- data/lib/catissue/annotation/annotation_class.rb +277 -0
- data/lib/catissue/annotation/annotation_module.rb +77 -0
- data/lib/catissue/annotation/hibernate_mapping.rb +46 -0
- data/lib/catissue/annotation/proxy.rb +28 -0
- data/lib/catissue/annotation/proxy_class.rb +68 -0
- data/lib/catissue/cli/migrate.rb +2 -2
- data/lib/catissue/cli/smoke.rb +6 -4
- data/lib/catissue/database/annotation/annotation_service.rb +75 -61
- data/lib/catissue/database/annotation/annotator.rb +17 -76
- data/lib/catissue/database/annotation/entity_facade.rb +265 -0
- data/lib/catissue/database/annotation/id_generator.rb +62 -0
- data/lib/catissue/database/annotation/integration_service.rb +105 -59
- data/lib/catissue/database/annotation/reference_writer.rb +150 -0
- data/lib/catissue/database/controlled_values.rb +12 -12
- data/lib/catissue/database.rb +148 -58
- data/lib/catissue/domain/abstract_specimen.rb +40 -14
- data/lib/catissue/domain/abstract_specimen_collection_group.rb +1 -3
- data/lib/catissue/domain/collection_protocol.rb +13 -5
- data/lib/catissue/domain/collection_protocol_event.rb +1 -14
- data/lib/catissue/domain/consent_tier_response.rb +2 -0
- data/lib/catissue/domain/consent_tier_status.rb +5 -3
- data/lib/catissue/domain/container.rb +14 -10
- data/lib/catissue/domain/container_position.rb +8 -0
- data/lib/catissue/domain/container_type.rb +13 -6
- data/lib/catissue/domain/participant.rb +15 -10
- data/lib/catissue/domain/site.rb +9 -3
- data/lib/catissue/domain/specimen.rb +79 -40
- data/lib/catissue/domain/specimen_array.rb +11 -1
- data/lib/catissue/domain/specimen_collection_group.rb +79 -41
- data/lib/catissue/domain/specimen_event_parameters.rb +5 -8
- data/lib/catissue/domain/specimen_position.rb +0 -2
- data/lib/catissue/domain/specimen_requirement.rb +1 -1
- data/lib/catissue/domain/storage_container.rb +109 -48
- data/lib/catissue/domain/storage_type.rb +1 -1
- data/lib/catissue/migration/migrator.rb +6 -14
- data/lib/catissue/resource.rb +18 -8
- data/lib/catissue/util/position.rb +11 -1
- data/lib/catissue/util/storable.rb +18 -11
- data/lib/catissue/util/storage_type_holder.rb +44 -6
- data/lib/catissue/version.rb +1 -1
- metadata +86 -35
- data/bin/migrate.rb +0 -42
- data/bin/seed.rb +0 -43
- data/examples/galena/doc/CaTissue/Participant.html +0 -241
- data/examples/galena/doc/CaTissue/SpecimenCollectionGroup.html +0 -190
- data/examples/galena/doc/CaTissue/StorageContainer.html +0 -179
- data/examples/galena/doc/CaTissue/TissueSpecimen.html +0 -320
- data/examples/galena/doc/CaTissue.html +0 -93
- data/examples/galena/doc/Galena/Seed/Defaults.html +0 -650
- data/examples/galena/doc/Galena/Seed.html +0 -203
- data/examples/galena/doc/Galena.html +0 -172
- data/examples/galena/doc/_index.html +0 -181
- data/examples/galena/doc/class_list.html +0 -36
- data/examples/galena/doc/css/common.css +0 -1
- data/examples/galena/doc/css/full_list.css +0 -53
- data/examples/galena/doc/css/style.css +0 -307
- data/examples/galena/doc/file.README.html +0 -153
- data/examples/galena/doc/file_list.html +0 -38
- data/examples/galena/doc/frames.html +0 -13
- data/examples/galena/doc/index.html +0 -153
- data/examples/galena/doc/js/app.js +0 -202
- data/examples/galena/doc/js/full_list.js +0 -149
- data/examples/galena/doc/js/jquery.js +0 -154
- data/examples/galena/doc/method_list.html +0 -163
- data/examples/galena/doc/top-level-namespace.html +0 -112
- data/lib/README.html +0 -33
- data/lib/catissue/database/annotation/annotatable_service.rb +0 -25
- data/lib/catissue/database/annotation/entity_manager.rb +0 -10
- data/lib/galena/cli/seed.rb +0 -43
- data/lib/galena/migration/filter_shims.rb +0 -43
- data/lib/galena/migration/frozen_shims.rb +0 -53
- data/lib/galena/seed/defaults.rb +0 -109
@@ -0,0 +1,15 @@
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<?xml version="1.0" encoding="UTF-8"?>
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<!DOCTYPE hibernate-mapping PUBLIC "-//Hibernate/Hibernate Mapping DTD 3.0//EN" "http://hibernate.sourceforge.net/hibernate-mapping-3.0.dtd">
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<hibernate-mapping package="pathology_scg">
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<class name="ExcionalBiopsyMarginUninvolved" table="DE_E_1612" lazy="true" polymorphism="explicit">
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<cache usage="read-write" />
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<id name="id" type="java.lang.Long" column="IDENTIFIER">
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<generator class="assigned" />
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</id>
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<property name="closestDistanceToTumor" type="java.lang.Double" column="DE_AT_1614" />
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<many-to-one name="ExcisionalBiopsyColorectalDeepMargin" class="pathology_scg.ExcisionalBiopsyColorectalDeepMargin" column="DE_E_1608_1610_IDENTIFIER" unique="true" lazy="proxy" />
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<many-to-one name="ExcisionalBiopsyColorectalLateralOrMucosalMargin" class="pathology_scg.ExcisionalBiopsyColorectalLateralOrMucosalMargin" column="DE_E_1648_1650_IDENTIFIER" unique="true" lazy="proxy" />
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</class>
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</hibernate-mapping>
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<?xml version="1.0" encoding="UTF-8"?>
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<!DOCTYPE hibernate-mapping PUBLIC "-//Hibernate/Hibernate Mapping DTD 3.0//EN" "http://hibernate.sourceforge.net/hibernate-mapping-3.0.dtd">
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<hibernate-mapping package="pathology_scg">
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<class name="ExcisionalBiopsyColorectalDeepMargin" table="DE_E_1608" lazy="true" polymorphism="explicit">
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<cache usage="read-write" />
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<id name="id" type="java.lang.Long" column="IDENTIFIER">
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<generator class="assigned" />
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</id>
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<property name="MarginStatus" type="java.lang.String" column="DE_AT_1611" />
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<one-to-one name="ExcionalBiopsyMarginUninvolved" class="pathology_scg.ExcionalBiopsyMarginUninvolved" property-ref="ExcisionalBiopsyColorectalDeepMargin" />
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<many-to-one name="excisionalBiopsyBasedColorectalPathologyAnnotation" class="pathology_scg.ExcisionalBiopsyBasedColorectalPathologyAnnotation" column="DE_E_1631_1633_IDENTIFIER" lazy="proxy" />
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</class>
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</hibernate-mapping>
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<?xml version="1.0" encoding="UTF-8"?>
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<!DOCTYPE hibernate-mapping PUBLIC "-//Hibernate/Hibernate Mapping DTD 3.0//EN" "http://hibernate.sourceforge.net/hibernate-mapping-3.0.dtd">
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<hibernate-mapping package="pathology_scg">
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<class name="ExcisionalBiopsyColorectalLateralOrMucosalMargin" table="DE_E_1648" lazy="true" polymorphism="explicit">
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<cache usage="read-write" />
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<id name="id" type="java.lang.Long" column="IDENTIFIER">
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<generator class="assigned" />
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</id>
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<property name="MarginStatus" type="java.lang.String" column="DE_AT_1651" />
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<one-to-one name="ExcionalBiopsyMarginUninvolved" class="pathology_scg.ExcionalBiopsyMarginUninvolved" property-ref="ExcisionalBiopsyColorectalLateralOrMucosalMargin" />
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<many-to-one name="excisionalBiopsyBasedColorectalPathologyAnnotation" class="pathology_scg.ExcisionalBiopsyBasedColorectalPathologyAnnotation" column="DE_E_1631_1634_IDENTIFIER" lazy="proxy" />
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</class>
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</hibernate-mapping>
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<?xml version="1.0" encoding="UTF-8"?>
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<!DOCTYPE hibernate-mapping PUBLIC "-//Hibernate/Hibernate Mapping DTD 3.0//EN" "http://hibernate.sourceforge.net/hibernate-mapping-3.0.dtd">
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<hibernate-mapping package="pathology_scg">
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<class name="ExtraprostaticExtension" table="DE_E_1685" lazy="true" polymorphism="explicit">
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<cache usage="read-write" />
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<id name="id" type="java.lang.Long" column="IDENTIFIER">
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<generator class="assigned" />
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</id>
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<property name="IsFocal" type="java.lang.Boolean" column="DE_AT_1688" />
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<property name="Status" type="java.lang.String" column="DE_AT_1689" />
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<set name="ExtraprostaticExtensionTissueSites" lazy="true" inverse="true">
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<cache usage="read-write" />
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<key column="DE_E_1685_1687_IDENTIFIER" />
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<one-to-many class="pathology_scg.ExtraprostaticExtensionTissueSites" />
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</set>
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<many-to-one name="RadicalProstatectomyPathologyAnnotation" class="pathology_scg.RadicalProstatectomyPathologyAnnotation" column="DE_E_1676_1678_IDENTIFIER" unique="true" lazy="proxy" />
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</class>
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</hibernate-mapping>
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<?xml version="1.0" encoding="UTF-8"?>
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<!DOCTYPE hibernate-mapping PUBLIC "-//Hibernate/Hibernate Mapping DTD 3.0//EN" "http://hibernate.sourceforge.net/hibernate-mapping-3.0.dtd">
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<hibernate-mapping package="pathology_scg">
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<class name="ExtraprostaticExtensionTissueSites" table="DE_E_1690" lazy="true" polymorphism="explicit">
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<cache usage="read-write" />
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<id name="id" type="java.lang.Long" column="IDENTIFIER">
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<generator class="assigned" />
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</id>
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<property name="TissueSite" type="java.lang.String" column="DE_AT_1692" />
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<many-to-one name="ExtraprostaticExtension" class="pathology_scg.ExtraprostaticExtension" column="DE_E_1685_1687_IDENTIFIER" lazy="proxy" />
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</class>
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</hibernate-mapping>
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<?xml version="1.0" encoding="UTF-8"?>
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<!DOCTYPE hibernate-mapping PUBLIC "-//Hibernate/Hibernate Mapping DTD 3.0//EN" "http://hibernate.sourceforge.net/hibernate-mapping-3.0.dtd">
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<hibernate-mapping package="pathology_scg">
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<class name="GleasonScore" table="DE_E_1551" lazy="true" polymorphism="explicit">
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<cache usage="read-write" />
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<id name="id" type="java.lang.Long" column="IDENTIFIER">
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<generator class="assigned" />
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</id>
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<property name="TertiaryPatternScore" type="java.lang.String" column="DE_AT_1553" />
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<property name="SecondaryPatternScore" type="java.lang.String" column="DE_AT_1554" />
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<property name="PrimaryPatternScore" type="java.lang.String" column="DE_AT_1555" />
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<many-to-one name="ProstatePathologyAnnotation" class="pathology_scg.ProstatePathologyAnnotation" column="DE_E_1545_1547_IDENTIFIER" unique="true" lazy="proxy" />
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</class>
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</hibernate-mapping>
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<?xml version="1.0" encoding="UTF-8"?>
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<!DOCTYPE hibernate-mapping PUBLIC "-//Hibernate/Hibernate Mapping DTD 3.0//EN" "http://hibernate.sourceforge.net/hibernate-mapping-3.0.dtd">
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<hibernate-mapping package="pathology_scg">
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<class name="HistologicGrade" table="DE_E_1479" lazy="true" polymorphism="explicit">
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<cache usage="read-write" />
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<id name="id" type="java.lang.Long" column="IDENTIFIER">
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<generator class="assigned" />
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</id>
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<property name="Grade" type="java.lang.String" column="DE_AT_1481" />
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<property name="OtherGradingSystemName" type="java.lang.String" column="DE_AT_1482" />
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<property name="GradingSystemName" type="java.lang.String" column="DE_AT_1483" />
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<many-to-one name="BaseSolidTissuePathologyAnnotation" class="pathology_scg.BaseSolidTissuePathologyAnnotation" column="DE_E_1461_1465_IDENTIFIER" lazy="proxy" />
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</class>
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<!DOCTYPE hibernate-mapping PUBLIC "-//Hibernate/Hibernate Mapping DTD 3.0//EN" "http://hibernate.sourceforge.net/hibernate-mapping-3.0.dtd">
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<hibernate-mapping package="pathology_scg">
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<class name="HistologicType" table="DE_E_1447" lazy="true" polymorphism="explicit">
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<cache usage="read-write" />
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<id name="id" type="java.lang.Long" column="IDENTIFIER">
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<generator class="assigned" />
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</id>
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<property name="Type" type="java.lang.String" column="DE_AT_1450" />
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<many-to-one name="BasePathologyAnnotation" class="pathology_scg.BasePathologyAnnotation" column="DE_E_1440_1443_IDENTIFIER" lazy="proxy" />
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<set name="HistologicVariantType" lazy="true" inverse="true">
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<cache usage="read-write" />
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<key column="DE_E_1447_1449_IDENTIFIER" />
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<one-to-many class="pathology_scg.HistologicVariantType" />
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</set>
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</class>
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<!DOCTYPE hibernate-mapping PUBLIC "-//Hibernate/Hibernate Mapping DTD 3.0//EN" "http://hibernate.sourceforge.net/hibernate-mapping-3.0.dtd">
|
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+
|
4
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<hibernate-mapping package="pathology_scg">
|
5
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<class name="HistologicVariantType" table="DE_E_1451" lazy="true" polymorphism="explicit">
|
6
|
+
<cache usage="read-write" />
|
7
|
+
<id name="id" type="java.lang.Long" column="IDENTIFIER">
|
8
|
+
<generator class="assigned" />
|
9
|
+
</id>
|
10
|
+
<property name="OtherHistologicType" type="java.lang.String" column="DE_AT_1453" />
|
11
|
+
<many-to-one name="HistologicType" class="pathology_scg.HistologicType" column="DE_E_1447_1449_IDENTIFIER" lazy="proxy" />
|
12
|
+
</class>
|
13
|
+
</hibernate-mapping>
|
14
|
+
|
@@ -0,0 +1,16 @@
|
|
1
|
+
<?xml version="1.0" encoding="UTF-8"?>
|
2
|
+
<!DOCTYPE hibernate-mapping PUBLIC "-//Hibernate/Hibernate Mapping DTD 3.0//EN" "http://hibernate.sourceforge.net/hibernate-mapping-3.0.dtd">
|
3
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+
|
4
|
+
<hibernate-mapping package="pathology_scg">
|
5
|
+
<class name="ImmunoPhenotyping" table="DE_E_1584" lazy="true" polymorphism="explicit">
|
6
|
+
<cache usage="read-write" />
|
7
|
+
<id name="id" type="java.lang.Long" column="IDENTIFIER">
|
8
|
+
<generator class="assigned" />
|
9
|
+
</id>
|
10
|
+
<property name="Status" type="java.lang.String" column="DE_AT_1586" />
|
11
|
+
<property name="Result" type="java.lang.String" column="DE_AT_1587" />
|
12
|
+
<property name="MethodUsed" type="java.lang.String" column="DE_AT_1588" />
|
13
|
+
<many-to-one name="baseHaematologyPathologyAnnotation" class="pathology_scg.BaseHaematologyPathologyAnnotation" column="DE_E_1577_1580_IDENTIFIER" unique="true" lazy="proxy" />
|
14
|
+
</class>
|
15
|
+
</hibernate-mapping>
|
16
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+
|
@@ -0,0 +1,16 @@
|
|
1
|
+
<?xml version="1.0" encoding="UTF-8"?>
|
2
|
+
<!DOCTYPE hibernate-mapping PUBLIC "-//Hibernate/Hibernate Mapping DTD 3.0//EN" "http://hibernate.sourceforge.net/hibernate-mapping-3.0.dtd">
|
3
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+
|
4
|
+
<hibernate-mapping package="pathology_scg">
|
5
|
+
<class name="Invasion" table="DE_E_1468" lazy="true" polymorphism="explicit">
|
6
|
+
<cache usage="read-write" />
|
7
|
+
<id name="id" type="java.lang.Long" column="IDENTIFIER">
|
8
|
+
<generator class="assigned" />
|
9
|
+
</id>
|
10
|
+
<property name="PerineuralInvasion" type="java.lang.String" column="DE_AT_1470" />
|
11
|
+
<property name="VenousInvasion" type="java.lang.String" column="DE_AT_1471" />
|
12
|
+
<property name="LymphaticInvasion" type="java.lang.String" column="DE_AT_1472" />
|
13
|
+
<many-to-one name="baseSolidTissuePathologyAnnotation" class="pathology_scg.BaseSolidTissuePathologyAnnotation" column="DE_E_1461_1467_IDENTIFIER" unique="true" lazy="proxy" />
|
14
|
+
</class>
|
15
|
+
</hibernate-mapping>
|
16
|
+
|
@@ -0,0 +1,15 @@
|
|
1
|
+
<?xml version="1.0" encoding="UTF-8"?>
|
2
|
+
<!DOCTYPE hibernate-mapping PUBLIC "-//Hibernate/Hibernate Mapping DTD 3.0//EN" "http://hibernate.sourceforge.net/hibernate-mapping-3.0.dtd">
|
3
|
+
|
4
|
+
<hibernate-mapping package="pathology_scg">
|
5
|
+
<class name="KidneyMarginLocation" table="DE_E_1570" lazy="true" polymorphism="explicit">
|
6
|
+
<cache usage="read-write" />
|
7
|
+
<id name="id" type="java.lang.Long" column="IDENTIFIER">
|
8
|
+
<generator class="assigned" />
|
9
|
+
</id>
|
10
|
+
<property name="OtherLocation" type="java.lang.String" column="DE_AT_1572" />
|
11
|
+
<property name="Location" type="java.lang.String" column="DE_AT_1573" />
|
12
|
+
<many-to-one name="KidneyNephrectomyMargin" class="pathology_scg.KidneyNephrectomyMargin" column="DE_E_1566_1568_IDENTIFIER" lazy="proxy" />
|
13
|
+
</class>
|
14
|
+
</hibernate-mapping>
|
15
|
+
|
@@ -0,0 +1,19 @@
|
|
1
|
+
<?xml version="1.0" encoding="UTF-8"?>
|
2
|
+
<!DOCTYPE hibernate-mapping PUBLIC "-//Hibernate/Hibernate Mapping DTD 3.0//EN" "http://hibernate.sourceforge.net/hibernate-mapping-3.0.dtd">
|
3
|
+
|
4
|
+
<hibernate-mapping package="pathology_scg">
|
5
|
+
<class name="KidneyNephrectomyMargin" table="DE_E_1566" lazy="true" polymorphism="explicit">
|
6
|
+
<cache usage="read-write" />
|
7
|
+
<id name="id" type="java.lang.Long" column="IDENTIFIER">
|
8
|
+
<generator class="assigned" />
|
9
|
+
</id>
|
10
|
+
<property name="MarginStatus" type="java.lang.String" column="DE_AT_1569" />
|
11
|
+
<many-to-one name="KidneyNephrectomyBasedPathologyAnnotation" class="pathology_scg.KidneyNephrectomyBasedPathologyAnnotation" column="DE_E_1797_1799_IDENTIFIER" unique="true" lazy="proxy" />
|
12
|
+
<set name="KidneyMarginLocation" lazy="true" inverse="true">
|
13
|
+
<cache usage="read-write" />
|
14
|
+
<key column="DE_E_1566_1568_IDENTIFIER" />
|
15
|
+
<one-to-many class="pathology_scg.KidneyMarginLocation" />
|
16
|
+
</set>
|
17
|
+
</class>
|
18
|
+
</hibernate-mapping>
|
19
|
+
|
@@ -0,0 +1,16 @@
|
|
1
|
+
<?xml version="1.0" encoding="UTF-8"?>
|
2
|
+
<!DOCTYPE hibernate-mapping PUBLIC "-//Hibernate/Hibernate Mapping DTD 3.0//EN" "http://hibernate.sourceforge.net/hibernate-mapping-3.0.dtd">
|
3
|
+
|
4
|
+
<hibernate-mapping package="pathology_scg">
|
5
|
+
<class name="LateralMelanomaMargin" table="DE_E_1749" lazy="true" polymorphism="explicit">
|
6
|
+
<cache usage="read-write" />
|
7
|
+
<id name="id" type="java.lang.Long" column="IDENTIFIER">
|
8
|
+
<generator class="assigned" />
|
9
|
+
</id>
|
10
|
+
<property name="MarginLocation" type="java.lang.String" column="DE_AT_1752" />
|
11
|
+
<property name="MarginStatus" type="java.lang.String" column="DE_AT_1753" />
|
12
|
+
<one-to-one name="UninvolvedMelanomaMargin" class="pathology_scg.UninvolvedMelanomaMargin" property-ref="LateralMelanomaMargin" />
|
13
|
+
<many-to-one name="melanomaPathologyAnnotation" class="pathology_scg.MelanomaPathologyAnnotation" column="DE_E_1735_1745_IDENTIFIER" lazy="proxy" />
|
14
|
+
</class>
|
15
|
+
</hibernate-mapping>
|
16
|
+
|
@@ -0,0 +1,15 @@
|
|
1
|
+
<?xml version="1.0" encoding="UTF-8"?>
|
2
|
+
<!DOCTYPE hibernate-mapping PUBLIC "-//Hibernate/Hibernate Mapping DTD 3.0//EN" "http://hibernate.sourceforge.net/hibernate-mapping-3.0.dtd">
|
3
|
+
|
4
|
+
<hibernate-mapping package="pathology_scg">
|
5
|
+
<class name="LocalExcisionColorectalDeepMargin" table="DE_E_1784" lazy="true" polymorphism="explicit">
|
6
|
+
<cache usage="read-write" />
|
7
|
+
<id name="id" type="java.lang.Long" column="IDENTIFIER">
|
8
|
+
<generator class="assigned" />
|
9
|
+
</id>
|
10
|
+
<property name="MarginStatus" type="java.lang.String" column="DE_AT_1787" />
|
11
|
+
<one-to-one name="ColorectalLocalExcisionMarginUninvolved" class="pathology_scg.ColorectalLocalExcisionMarginUninvolved" property-ref="LocalExcisionColorectalDeepMargin" />
|
12
|
+
<many-to-one name="localExcisionBasedColorectalPathologyAnnotation" class="pathology_scg.LocalExcisionBasedColorectalPathologyAnnotation" column="DE_E_1788_1791_IDENTIFIER" lazy="proxy" />
|
13
|
+
</class>
|
14
|
+
</hibernate-mapping>
|
15
|
+
|
@@ -0,0 +1,20 @@
|
|
1
|
+
<?xml version="1.0" encoding="UTF-8"?>
|
2
|
+
<!DOCTYPE hibernate-mapping PUBLIC "-//Hibernate/Hibernate Mapping DTD 3.0//EN" "http://hibernate.sourceforge.net/hibernate-mapping-3.0.dtd">
|
3
|
+
|
4
|
+
<hibernate-mapping package="pathology_scg">
|
5
|
+
<class name="LocalExcisionColorectalLateralMargin" table="DE_E_1765" lazy="true" polymorphism="explicit">
|
6
|
+
<cache usage="read-write" />
|
7
|
+
<id name="id" type="java.lang.Long" column="IDENTIFIER">
|
8
|
+
<generator class="assigned" />
|
9
|
+
</id>
|
10
|
+
<property name="MarginLocation" type="java.lang.String" column="DE_AT_1768" />
|
11
|
+
<property name="MarginStatus" type="java.lang.String" column="DE_AT_1769" />
|
12
|
+
<set name="uninvolvedMarginCollection" lazy="true" inverse="true">
|
13
|
+
<cache usage="read-write" />
|
14
|
+
<key column="DE_E_1765_1767_IDENTIFIER" />
|
15
|
+
<one-to-many class="pathology_scg.ColorectalLocalExcisionMarginUninvolved" />
|
16
|
+
</set>
|
17
|
+
<many-to-one name="localExcisionBasedColorectalPathologyAnnotation" class="pathology_scg.LocalExcisionBasedColorectalPathologyAnnotation" column="DE_E_1788_1793_IDENTIFIER" lazy="proxy" />
|
18
|
+
</class>
|
19
|
+
</hibernate-mapping>
|
20
|
+
|
@@ -0,0 +1,17 @@
|
|
1
|
+
<?xml version="1.0" encoding="UTF-8"?>
|
2
|
+
<!DOCTYPE hibernate-mapping PUBLIC "-//Hibernate/Hibernate Mapping DTD 3.0//EN" "http://hibernate.sourceforge.net/hibernate-mapping-3.0.dtd">
|
3
|
+
|
4
|
+
<hibernate-mapping package="pathology_scg">
|
5
|
+
<class name="LungResectionMargin" table="DE_E_1527" lazy="true" polymorphism="explicit">
|
6
|
+
<cache usage="read-write" />
|
7
|
+
<id name="id" type="java.lang.Long" column="IDENTIFIER">
|
8
|
+
<generator class="assigned" />
|
9
|
+
</id>
|
10
|
+
<property name="OtherLocation" type="java.lang.String" column="DE_AT_1530" />
|
11
|
+
<property name="MarginLocation" type="java.lang.String" column="DE_AT_1531" />
|
12
|
+
<property name="MarginStatus" type="java.lang.String" column="DE_AT_1532" />
|
13
|
+
<one-to-one name="LungResectionMarginsUninvolved" class="pathology_scg.LungResectionMarginsUninvolved" property-ref="LungResectionMargin" />
|
14
|
+
<many-to-one name="LungResectionBasedPathologyAnnotation" class="pathology_scg.LungResectionBasedPathologyAnnotation" column="DE_E_1518_1520_IDENTIFIER" lazy="proxy" />
|
15
|
+
</class>
|
16
|
+
</hibernate-mapping>
|
17
|
+
|
@@ -0,0 +1,14 @@
|
|
1
|
+
<?xml version="1.0" encoding="UTF-8"?>
|
2
|
+
<!DOCTYPE hibernate-mapping PUBLIC "-//Hibernate/Hibernate Mapping DTD 3.0//EN" "http://hibernate.sourceforge.net/hibernate-mapping-3.0.dtd">
|
3
|
+
|
4
|
+
<hibernate-mapping package="pathology_scg">
|
5
|
+
<class name="LungResectionMarginsUninvolved" table="DE_E_1533" lazy="true" polymorphism="explicit">
|
6
|
+
<cache usage="read-write" />
|
7
|
+
<id name="id" type="java.lang.Long" column="IDENTIFIER">
|
8
|
+
<generator class="assigned" />
|
9
|
+
</id>
|
10
|
+
<property name="ClosestDistanceToTumor" type="java.lang.Double" column="DE_AT_1535" />
|
11
|
+
<many-to-one name="LungResectionMargin" class="pathology_scg.LungResectionMargin" column="DE_E_1527_1529_IDENTIFIER" unique="true" lazy="proxy" />
|
12
|
+
</class>
|
13
|
+
</hibernate-mapping>
|
14
|
+
|
@@ -0,0 +1,14 @@
|
|
1
|
+
<?xml version="1.0" encoding="UTF-8"?>
|
2
|
+
<!DOCTYPE hibernate-mapping PUBLIC "-//Hibernate/Hibernate Mapping DTD 3.0//EN" "http://hibernate.sourceforge.net/hibernate-mapping-3.0.dtd">
|
3
|
+
|
4
|
+
<hibernate-mapping package="pathology_scg">
|
5
|
+
<class name="MacroscopicExtentOfTumor" table="DE_E_1574" lazy="true" polymorphism="explicit">
|
6
|
+
<cache usage="read-write" />
|
7
|
+
<id name="id" type="java.lang.Long" column="IDENTIFIER">
|
8
|
+
<generator class="assigned" />
|
9
|
+
</id>
|
10
|
+
<property name="ExtentOfTumor" type="java.lang.String" column="DE_AT_1576" />
|
11
|
+
<many-to-one name="KidneyNephrectomyBasedPathologyAnnotation" class="pathology_scg.KidneyNephrectomyBasedPathologyAnnotation" column="DE_E_1797_1800_IDENTIFIER" lazy="proxy" />
|
12
|
+
</class>
|
13
|
+
</hibernate-mapping>
|
14
|
+
|
@@ -0,0 +1,15 @@
|
|
1
|
+
<?xml version="1.0" encoding="UTF-8"?>
|
2
|
+
<!DOCTYPE hibernate-mapping PUBLIC "-//Hibernate/Hibernate Mapping DTD 3.0//EN" "http://hibernate.sourceforge.net/hibernate-mapping-3.0.dtd">
|
3
|
+
|
4
|
+
<hibernate-mapping package="pathology_scg">
|
5
|
+
<class name="MesentricMargin" table="DE_E_1693" lazy="true" polymorphism="explicit">
|
6
|
+
<cache usage="read-write" />
|
7
|
+
<id name="id" type="java.lang.Long" column="IDENTIFIER">
|
8
|
+
<generator class="assigned" />
|
9
|
+
</id>
|
10
|
+
<property name="MarginStatus" type="java.lang.String" column="DE_AT_1696" />
|
11
|
+
<one-to-one name="uninvolvedMargin" class="pathology_scg.ColorectalResectedMarginUninvolved" property-ref="resectionColorectalMesentricMargin" />
|
12
|
+
<many-to-one name="ResectionBasedColorectalPathologyAnnotation" class="pathology_scg.ResectionBasedColorectalPathologyAnnotation" column="DE_E_1715_1718_IDENTIFIER" lazy="proxy" />
|
13
|
+
</class>
|
14
|
+
</hibernate-mapping>
|
15
|
+
|
@@ -0,0 +1,15 @@
|
|
1
|
+
<?xml version="1.0" encoding="UTF-8"?>
|
2
|
+
<!DOCTYPE hibernate-mapping PUBLIC "-//Hibernate/Hibernate Mapping DTD 3.0//EN" "http://hibernate.sourceforge.net/hibernate-mapping-3.0.dtd">
|
3
|
+
|
4
|
+
<hibernate-mapping package="pathology_scg">
|
5
|
+
<class name="MetastasisTissueSite" table="DE_E_1501" lazy="true" polymorphism="explicit">
|
6
|
+
<cache usage="read-write" />
|
7
|
+
<id name="id" type="java.lang.Long" column="IDENTIFIER">
|
8
|
+
<generator class="assigned" />
|
9
|
+
</id>
|
10
|
+
<property name="OtherTissueSite" type="java.lang.String" column="DE_AT_1503" />
|
11
|
+
<property name="TissueSite" type="java.lang.String" column="DE_AT_1504" />
|
12
|
+
<many-to-one name="DistantMetastasis" class="pathology_scg.DistantMetastasis" column="DE_E_1497_1499_IDENTIFIER" lazy="proxy" />
|
13
|
+
</class>
|
14
|
+
</hibernate-mapping>
|
15
|
+
|
@@ -0,0 +1,14 @@
|
|
1
|
+
<?xml version="1.0" encoding="UTF-8"?>
|
2
|
+
<!DOCTYPE hibernate-mapping PUBLIC "-//Hibernate/Hibernate Mapping DTD 3.0//EN" "http://hibernate.sourceforge.net/hibernate-mapping-3.0.dtd">
|
3
|
+
|
4
|
+
<hibernate-mapping package="pathology_scg">
|
5
|
+
<class name="Microcalcification" table="DE_E_1762" lazy="true" polymorphism="explicit">
|
6
|
+
<cache usage="read-write" />
|
7
|
+
<id name="id" type="java.lang.Long" column="IDENTIFIER">
|
8
|
+
<generator class="assigned" />
|
9
|
+
</id>
|
10
|
+
<property name="Value" type="java.lang.String" column="DE_AT_1764" />
|
11
|
+
<many-to-one name="BreastPathologyAnnotation" class="pathology_scg.BreastPathologyAnnotation" column="DE_E_1754_1756_IDENTIFIER" lazy="proxy" />
|
12
|
+
</class>
|
13
|
+
</hibernate-mapping>
|
14
|
+
|
@@ -0,0 +1,17 @@
|
|
1
|
+
<?xml version="1.0" encoding="UTF-8"?>
|
2
|
+
<!DOCTYPE hibernate-mapping PUBLIC "-//Hibernate/Hibernate Mapping DTD 3.0//EN" "http://hibernate.sourceforge.net/hibernate-mapping-3.0.dtd">
|
3
|
+
|
4
|
+
<hibernate-mapping package="pathology_scg">
|
5
|
+
<class name="NottinghamHistologicScore" table="DE_E_1709" lazy="true" polymorphism="explicit">
|
6
|
+
<cache usage="read-write" />
|
7
|
+
<id name="id" type="java.lang.Long" column="IDENTIFIER">
|
8
|
+
<generator class="assigned" />
|
9
|
+
</id>
|
10
|
+
<property name="TotalNottinghamScore" type="java.lang.Long" column="DE_AT_1711" />
|
11
|
+
<property name="MitoticCountScore" type="java.lang.String" column="DE_AT_1712" />
|
12
|
+
<property name="NuclearPleomorphismScore" type="java.lang.String" column="DE_AT_1713" />
|
13
|
+
<property name="TubuleFormationScore" type="java.lang.String" column="DE_AT_1714" />
|
14
|
+
<many-to-one name="BreastPathologyAnnotation" class="pathology_scg.BreastPathologyAnnotation" column="DE_E_1754_1759_IDENTIFIER" unique="true" lazy="proxy" />
|
15
|
+
</class>
|
16
|
+
</hibernate-mapping>
|
17
|
+
|
@@ -0,0 +1,15 @@
|
|
1
|
+
<?xml version="1.0" encoding="UTF-8"?>
|
2
|
+
<!DOCTYPE hibernate-mapping PUBLIC "-//Hibernate/Hibernate Mapping DTD 3.0//EN" "http://hibernate.sourceforge.net/hibernate-mapping-3.0.dtd">
|
3
|
+
|
4
|
+
<hibernate-mapping package="pathology_scg">
|
5
|
+
<class name="OtherResectedOrgans" table="DE_E_1701" lazy="true" polymorphism="explicit">
|
6
|
+
<cache usage="read-write" />
|
7
|
+
<id name="id" type="java.lang.Long" column="IDENTIFIER">
|
8
|
+
<generator class="assigned" />
|
9
|
+
</id>
|
10
|
+
<property name="OtherOtherOrgansResected" type="java.lang.String" column="DE_AT_1703" />
|
11
|
+
<property name="OtherOrgansResected" type="java.lang.String" column="DE_AT_1704" />
|
12
|
+
<many-to-one name="pancreasePathologyAnnotation" class="pathology_scg.PancreasPathologyAnnotation" column="DE_E_1705_1708_IDENTIFIER" lazy="proxy" />
|
13
|
+
</class>
|
14
|
+
</hibernate-mapping>
|
15
|
+
|
@@ -0,0 +1,20 @@
|
|
1
|
+
<?xml version="1.0" encoding="UTF-8"?>
|
2
|
+
<!DOCTYPE hibernate-mapping PUBLIC "-//Hibernate/Hibernate Mapping DTD 3.0//EN" "http://hibernate.sourceforge.net/hibernate-mapping-3.0.dtd">
|
3
|
+
|
4
|
+
<hibernate-mapping package="pathology_scg">
|
5
|
+
<class name="PancreasMargin" table="DE_E_1615" lazy="true" polymorphism="explicit">
|
6
|
+
<cache usage="read-write" />
|
7
|
+
<id name="id" type="java.lang.Long" column="IDENTIFIER">
|
8
|
+
<generator class="assigned" />
|
9
|
+
</id>
|
10
|
+
<property name="MarginStatus" type="java.lang.String" column="DE_AT_1619" />
|
11
|
+
<one-to-one name="PancreasMarginUninvolvedByInvasiveCarcinoma" class="pathology_scg.PancreasMarginUninvolvedByInvasiveCarcinoma" property-ref="PancreasMargin" />
|
12
|
+
<set name="PancreasMarginInvolvedByInvasiveCarcinoma" lazy="true" inverse="true">
|
13
|
+
<cache usage="read-write" />
|
14
|
+
<key column="DE_E_1615_1617_IDENTIFIER" />
|
15
|
+
<one-to-many class="pathology_scg.PancreasMarginInvolvedByInvasiveCarcinoma" />
|
16
|
+
</set>
|
17
|
+
<many-to-one name="pancreasePathologyAnnotation" class="pathology_scg.PancreasPathologyAnnotation" column="DE_E_1705_1707_IDENTIFIER" unique="true" lazy="proxy" />
|
18
|
+
</class>
|
19
|
+
</hibernate-mapping>
|
20
|
+
|
@@ -0,0 +1,15 @@
|
|
1
|
+
<?xml version="1.0" encoding="UTF-8"?>
|
2
|
+
<!DOCTYPE hibernate-mapping PUBLIC "-//Hibernate/Hibernate Mapping DTD 3.0//EN" "http://hibernate.sourceforge.net/hibernate-mapping-3.0.dtd">
|
3
|
+
|
4
|
+
<hibernate-mapping package="pathology_scg">
|
5
|
+
<class name="PancreasMarginInvolvedByInvasiveCarcinoma" table="DE_E_1562" lazy="true" polymorphism="explicit">
|
6
|
+
<cache usage="read-write" />
|
7
|
+
<id name="id" type="java.lang.Long" column="IDENTIFIER">
|
8
|
+
<generator class="assigned" />
|
9
|
+
</id>
|
10
|
+
<property name="OtherMarginLocation" type="java.lang.String" column="DE_AT_1564" />
|
11
|
+
<property name="MarginLocation" type="java.lang.String" column="DE_AT_1565" />
|
12
|
+
<many-to-one name="PancreasMargin" class="pathology_scg.PancreasMargin" column="DE_E_1615_1617_IDENTIFIER" lazy="proxy" />
|
13
|
+
</class>
|
14
|
+
</hibernate-mapping>
|
15
|
+
|
@@ -0,0 +1,20 @@
|
|
1
|
+
<?xml version="1.0" encoding="UTF-8"?>
|
2
|
+
<!DOCTYPE hibernate-mapping PUBLIC "-//Hibernate/Hibernate Mapping DTD 3.0//EN" "http://hibernate.sourceforge.net/hibernate-mapping-3.0.dtd">
|
3
|
+
|
4
|
+
<hibernate-mapping package="pathology_scg">
|
5
|
+
<class name="PancreasMarginUninvolvedByInvasiveCarcinoma" table="DE_E_1620" lazy="true" polymorphism="explicit">
|
6
|
+
<cache usage="read-write" />
|
7
|
+
<id name="id" type="java.lang.Long" column="IDENTIFIER">
|
8
|
+
<generator class="assigned" />
|
9
|
+
</id>
|
10
|
+
<property name="MarginLocation" type="java.lang.String" column="DE_AT_1623" />
|
11
|
+
<property name="ClosestDistanceToTumor" type="java.lang.Double" column="DE_AT_1624" />
|
12
|
+
<many-to-one name="PancreasMargin" class="pathology_scg.PancreasMargin" column="DE_E_1615_1618_IDENTIFIER" unique="true" lazy="proxy" />
|
13
|
+
<set name="CarcinomaInSituStatus" lazy="true" inverse="true">
|
14
|
+
<cache usage="read-write" />
|
15
|
+
<key column="DE_E_1620_1622_IDENTIFIER" />
|
16
|
+
<one-to-many class="pathology_scg.CarcinomaInSituStatus" />
|
17
|
+
</set>
|
18
|
+
</class>
|
19
|
+
</hibernate-mapping>
|
20
|
+
|
@@ -0,0 +1,16 @@
|
|
1
|
+
<?xml version="1.0" encoding="UTF-8"?>
|
2
|
+
<!DOCTYPE hibernate-mapping PUBLIC "-//Hibernate/Hibernate Mapping DTD 3.0//EN" "http://hibernate.sourceforge.net/hibernate-mapping-3.0.dtd">
|
3
|
+
|
4
|
+
<hibernate-mapping package="pathology_scg">
|
5
|
+
<class name="PathologicalStaging" table="DE_E_1484" lazy="true" polymorphism="explicit">
|
6
|
+
<cache usage="read-write" />
|
7
|
+
<id name="id" type="java.lang.Long" column="IDENTIFIER">
|
8
|
+
<generator class="assigned" />
|
9
|
+
</id>
|
10
|
+
<one-to-one name="PrimaryTumorStage" class="pathology_scg.PrimaryTumorStage" property-ref="PathologicalStaging" />
|
11
|
+
<one-to-one name="regionalLymphNode" class="pathology_scg.RegionalLymphNode" property-ref="pathologicStaging" />
|
12
|
+
<one-to-one name="distantMetastasis" class="pathology_scg.DistantMetastasis" property-ref="pathologicStaging" />
|
13
|
+
<many-to-one name="baseSolidTissuePathologyAnnotation" class="pathology_scg.BaseSolidTissuePathologyAnnotation" column="DE_E_1461_1464_IDENTIFIER" unique="true" lazy="proxy" />
|
14
|
+
</class>
|
15
|
+
</hibernate-mapping>
|
16
|
+
|
@@ -0,0 +1,15 @@
|
|
1
|
+
<?xml version="1.0" encoding="UTF-8"?>
|
2
|
+
<!DOCTYPE hibernate-mapping PUBLIC "-//Hibernate/Hibernate Mapping DTD 3.0//EN" "http://hibernate.sourceforge.net/hibernate-mapping-3.0.dtd">
|
3
|
+
|
4
|
+
<hibernate-mapping package="pathology_scg">
|
5
|
+
<class name="PolypConfiguration" table="DE_E_1644" lazy="true" polymorphism="explicit">
|
6
|
+
<cache usage="read-write" />
|
7
|
+
<id name="id" type="java.lang.Long" column="IDENTIFIER">
|
8
|
+
<generator class="assigned" />
|
9
|
+
</id>
|
10
|
+
<property name="StalkLength" type="java.lang.Double" column="DE_AT_1646" />
|
11
|
+
<property name="Configuration" type="java.lang.String" column="DE_AT_1647" />
|
12
|
+
<many-to-one name="ExcisionalBiopsyBasedColorectalPathologyAnnotation" class="pathology_scg.ExcisionalBiopsyBasedColorectalPathologyAnnotation" column="DE_E_1631_1636_IDENTIFIER" unique="true" lazy="proxy" />
|
13
|
+
</class>
|
14
|
+
</hibernate-mapping>
|
15
|
+
|
@@ -0,0 +1,14 @@
|
|
1
|
+
<?xml version="1.0" encoding="UTF-8"?>
|
2
|
+
<!DOCTYPE hibernate-mapping PUBLIC "-//Hibernate/Hibernate Mapping DTD 3.0//EN" "http://hibernate.sourceforge.net/hibernate-mapping-3.0.dtd">
|
3
|
+
|
4
|
+
<hibernate-mapping package="pathology_scg">
|
5
|
+
<class name="PrimaryTumorStage" table="DE_E_1505" lazy="true" polymorphism="explicit">
|
6
|
+
<cache usage="read-write" />
|
7
|
+
<id name="id" type="java.lang.Long" column="IDENTIFIER">
|
8
|
+
<generator class="assigned" />
|
9
|
+
</id>
|
10
|
+
<property name="PrimaryTumorStage" type="java.lang.String" column="DE_AT_1507" />
|
11
|
+
<many-to-one name="PathologicalStaging" class="pathology_scg.PathologicalStaging" column="DE_E_1484_1486_IDENTIFIER" unique="true" lazy="proxy" />
|
12
|
+
</class>
|
13
|
+
</hibernate-mapping>
|
14
|
+
|
@@ -0,0 +1,15 @@
|
|
1
|
+
<?xml version="1.0" encoding="UTF-8"?>
|
2
|
+
<!DOCTYPE hibernate-mapping PUBLIC "-//Hibernate/Hibernate Mapping DTD 3.0//EN" "http://hibernate.sourceforge.net/hibernate-mapping-3.0.dtd">
|
3
|
+
|
4
|
+
<hibernate-mapping package="pathology_scg">
|
5
|
+
<class name="ProstateMarginLocation" table="DE_E_1663" lazy="true" polymorphism="explicit">
|
6
|
+
<cache usage="read-write" />
|
7
|
+
<id name="id" type="java.lang.Long" column="IDENTIFIER">
|
8
|
+
<generator class="assigned" />
|
9
|
+
</id>
|
10
|
+
<property name="OtherLocation" type="java.lang.String" column="DE_AT_1665" />
|
11
|
+
<property name="involvedMarginLocation" type="java.lang.String" column="DE_AT_1666" />
|
12
|
+
<many-to-one name="RadicalProstatectomyMargin" class="pathology_scg.RadicalProstatectomyMargin" column="DE_E_1680_1682_IDENTIFIER" lazy="proxy" />
|
13
|
+
</class>
|
14
|
+
</hibernate-mapping>
|
15
|
+
|
@@ -0,0 +1,15 @@
|
|
1
|
+
<?xml version="1.0" encoding="UTF-8"?>
|
2
|
+
<!DOCTYPE hibernate-mapping PUBLIC "-//Hibernate/Hibernate Mapping DTD 3.0//EN" "http://hibernate.sourceforge.net/hibernate-mapping-3.0.dtd">
|
3
|
+
|
4
|
+
<hibernate-mapping package="pathology_scg">
|
5
|
+
<class name="ProximalMargin" table="DE_E_1723" lazy="true" polymorphism="explicit">
|
6
|
+
<cache usage="read-write" />
|
7
|
+
<id name="id" type="java.lang.Long" column="IDENTIFIER">
|
8
|
+
<generator class="assigned" />
|
9
|
+
</id>
|
10
|
+
<property name="MarginStatus" type="java.lang.String" column="DE_AT_1726" />
|
11
|
+
<one-to-one name="uninvolvedMargin" class="pathology_scg.ColorectalResectedMarginUninvolved" property-ref="resectionColorectalProximalMargin" />
|
12
|
+
<many-to-one name="resectionBasedColorectalPathologyAnnotation" class="pathology_scg.ResectionBasedColorectalPathologyAnnotation" column="DE_E_1715_1720_IDENTIFIER" lazy="proxy" />
|
13
|
+
</class>
|
14
|
+
</hibernate-mapping>
|
15
|
+
|
@@ -0,0 +1,15 @@
|
|
1
|
+
<?xml version="1.0" encoding="UTF-8"?>
|
2
|
+
<!DOCTYPE hibernate-mapping PUBLIC "-//Hibernate/Hibernate Mapping DTD 3.0//EN" "http://hibernate.sourceforge.net/hibernate-mapping-3.0.dtd">
|
3
|
+
|
4
|
+
<hibernate-mapping package="pathology_scg">
|
5
|
+
<class name="RadialMargin" table="DE_E_1731" lazy="true" polymorphism="explicit">
|
6
|
+
<cache usage="read-write" />
|
7
|
+
<id name="id" type="java.lang.Long" column="IDENTIFIER">
|
8
|
+
<generator class="assigned" />
|
9
|
+
</id>
|
10
|
+
<property name="MarginStatus" type="java.lang.String" column="DE_AT_1734" />
|
11
|
+
<many-to-one name="uninvolvedMargin" class="pathology_scg.ColorectalResectedMarginUninvolved" column="DE_E_1697_1733_IDENTIFIER" lazy="proxy" />
|
12
|
+
<many-to-one name="ResectionBasedColorectalPathologyAnnotation" class="pathology_scg.ResectionBasedColorectalPathologyAnnotation" column="DE_E_1715_1717_IDENTIFIER" lazy="proxy" />
|
13
|
+
</class>
|
14
|
+
</hibernate-mapping>
|
15
|
+
|