RubyGems - caruby-tissue - Versions diffs - 1.2.2 → 1.2.3 - Mend

caruby-tissue 1.2.2 → 1.2.3

Files changed (153) hide show

data/examples/galena/doc/CaTissue/TissueSpecimen.html DELETED Viewed

@@ -1,320 +0,0 @@
-<!DOCTYPE html PUBLIC "-//W3C//DTD XHTML 1.0 Transitional//EN"
-  "http://www.w3.org/TR/xhtml1/DTD/xhtml1-transitional.dtd">
-<html xmlns="http://www.w3.org/1999/xhtml" xml:lang="en" lang="en">
-  <head>
-    <meta name="Content-Type" content="text/html; charset=utf-8" />
-<title>Class: CaTissue::TissueSpecimen</title>
-<link rel="stylesheet" href="../css/style.css" type="text/css" media="screen" charset="utf-8" />
-<link rel="stylesheet" href="../css/common.css" type="text/css" media="screen" charset="utf-8" />
-<script type="text/javascript" charset="utf-8">
-  relpath = '..';
-  if (relpath != '') relpath += '/';
-</script>
-<script type="text/javascript" charset="utf-8" src="../js/jquery.js"></script>
-<script type="text/javascript" charset="utf-8" src="../js/app.js"></script>
-  </head>
-  <body>
-    <script type="text/javascript" charset="utf-8">
-      if (window.top.frames.main) document.body.className = 'frames';
-    </script>
-    <div id="header">
-      <div id="menu">
-    <a href="../_index.html">Index (T)</a> &raquo;
-    <span class='title'><span class='object_link'><a href="../CaTissue.html" title="CaTissue (module)">CaTissue</a></span></span>
-     &raquo;
-    <span class="title">TissueSpecimen</span>
-  <div class="noframes"><span class="title">(</span><a href="." target="_top">no frames</a><span class="title">)</span></div>
-</div>
-      <div id="search">
-  <a id="class_list_link" href="#">Class List</a>
-  <a id="method_list_link" href="#">Method List</a>
-  <a id ="file_list_link" href="#">File List</a>
-</div>
-      <div class="clear"></div>
-    </div>
-    <iframe id="search_frame"></iframe>
-    <div id="content"><h1>Class: CaTissue::TissueSpecimen
-</h1>
-<dl class="box">
-    <dt class="r1">Inherits:</dt>
-    <dd class="r1">
-      <span class="inheritName">Object</span>
-        <ul class="fullTree">
-          <li>Object</li>
-            <li class="next">CaTissue::TissueSpecimen</li>
-        </ul>
-        <a href="#" class="inheritanceTree">show all</a>
-      </dd>
-    <dt class="r2 last">Defined in:</dt>
-    <dd class="r2 last">examples/galena/lib/galena/migration/filter_shims.rb<span class="defines">,<br />
-  examples/galena/lib/galena/migration/frozen_shims.rb</span>
-</dd>
-</dl>
-<div class="clear"></div>
-    <h2>
-      Instance Method Summary
-      <small>(<a href="#" class="summary_toggle">collapse</a>)</small>
-    </h2>
-    <ul class="summary">
-        <li class="public ">
-  <span class="summary_signature">
-      <a href="#migrate-instance_method" title="#migrate (instance method)">- (Object) <strong>migrate</strong>(row, migrated) </a>
-  </span>
-    <span class="summary_desc"><div class='inline'><p>
-Sets the specimen type to <tt>Frozen Tissue</tt>.
-</p>
-</div></span>
-</li>
-        <li class="public ">
-  <span class="summary_signature">
-      <a href="#migrate_initial_quantity-instance_method" title="#migrate_initial_quantity (instance method)">- (Object) <strong>migrate_initial_quantity</strong>(value, row) </a>
-  </span>
-    <span class="summary_desc"><div class='inline'><p>
-Parses the source field as a UOM::Measurement if it is a string.
-</p>
-</div></span>
-</li>
-        <li class="public ">
-  <span class="summary_signature">
-      <a href="#migrate_specimen_type-instance_method" title="#migrate_specimen_type (instance method)">- (Object) <strong>migrate_specimen_type</strong>(value, row) </a>
-  </span>
-    <span class="summary_desc"><div class='inline'><p>
-Transforms the <tt>Frozen?</tt> flag input field to the caTissue specimen
-type <tt>Frozen Tissue</tt> value.
-</p>
-</div></span>
-</li>
-    </ul>
-  <div id="instance_method_details" class="method_details_list">
-    <h2>Instance Method Details</h2>
-      <div class="method_details first">
-  <p class="signature first" id="migrate-instance_method">
-    - (<tt>Object</tt>) <strong>migrate</strong>(row, migrated)
-</p><div class="docstring">
-  <div class="discussion">
-    <p>
-Sets the specimen type to <tt>Frozen Tissue</tt>.
-</p>
-  </div>
-</div>
-<div class="tags">
-</div><table class="source_code">
-  <tr>
-    <td>
-      <pre class="lines">
-12
-13
-14
-15</pre>
-    </td>
-    <td>
-      <pre class="code"><span class="info file"># File 'examples/galena/lib/galena/migration/frozen_shims.rb', line 12</span>
-<span class='def def kw'>def</span> <span class='migrate identifier id'>migrate</span><span class='lparen token'>(</span><span class='row identifier id'>row</span><span class='comma token'>,</span> <span class='migrated identifier id'>migrated</span><span class='rparen token'>)</span>
-  <span class='super super kw'>super</span>
-  <span class='self self kw'>self</span><span class='dot token'>.</span><span class='specimen_type identifier id'>specimen_type</span> <span class='assign token'>=</span> <span class='string val'>'Frozen Tissue'</span>
-<span class='end end kw'>end</span>
-</pre>
-    </td>
-  </tr>
-</table>
-</div>
-      <div class="method_details ">
-  <p class="signature " id="migrate_initial_quantity-instance_method">
-    - (<tt>Object</tt>) <strong>migrate_initial_quantity</strong>(value, row)
-</p><div class="docstring">
-  <div class="discussion">
-    <p>
-Parses the source field as a UOM::Measurement if it is a string.
-Otherwises, returns the source value.
-</p>
-  </div>
-</div>
-<div class="tags">
-</div><table class="source_code">
-  <tr>
-    <td>
-      <pre class="lines">
-28
-29
-30
-31
-32
-33
-34</pre>
-    </td>
-    <td>
-      <pre class="code"><span class="info file"># File 'examples/galena/lib/galena/migration/filter_shims.rb', line 28</span>
-<span class='def def kw'>def</span> <span class='migrate_initial_quantity identifier id'>migrate_initial_quantity</span><span class='lparen token'>(</span><span class='value identifier id'>value</span><span class='comma token'>,</span> <span class='row identifier id'>row</span><span class='rparen token'>)</span>
-  <span class='comment val'># if value is not a string, then use it as is</span>
-  <span class='return return kw'>return</span> <span class='value identifier id'>value</span> <span class='unless unless_mod kw'>unless</span> <span class='value identifier id'>value</span><span class='dot token'>.</span><span class='is_a? fid id'>is_a?</span><span class='lparen token'>(</span><span class='String constant id'>String</span><span class='rparen token'>)</span>
-  <span class='comment val'># the value has a unit qualifier; parse the measurement.</span>
-  <span class='comment val'># the unit is normalized to the Specimen standard unit.</span>
-  <span class='value identifier id'>value</span><span class='dot token'>.</span><span class='to_measurement_quantity identifier id'>to_measurement_quantity</span><span class='lparen token'>(</span><span class='standard_unit identifier id'>standard_unit</span><span class='rparen token'>)</span>
-<span class='end end kw'>end</span>
-</pre>
-    </td>
-  </tr>
-</table>
-</div>
-      <div class="method_details ">
-  <p class="signature " id="migrate_specimen_type-instance_method">
-    - (<tt>Object</tt>) <strong>migrate_specimen_type</strong>(value, row)
-</p><div class="docstring">
-  <div class="discussion">
-    <p>
-Transforms the <tt>Frozen?</tt> flag input field to the caTissue specimen
-type <tt>Frozen Tissue</tt> value.
-</p>
-  </div>
-</div>
-<div class="tags">
-</div><table class="source_code">
-  <tr>
-    <td>
-      <pre class="lines">
-22
-23
-24</pre>
-    </td>
-    <td>
-      <pre class="code"><span class="info file"># File 'examples/galena/lib/galena/migration/filter_shims.rb', line 22</span>
-<span class='def def kw'>def</span> <span class='migrate_specimen_type identifier id'>migrate_specimen_type</span><span class='lparen token'>(</span><span class='value identifier id'>value</span><span class='comma token'>,</span> <span class='row identifier id'>row</span><span class='rparen token'>)</span>
-  <span class='string val'>'Frozen Tissue'</span> <span class='if if_mod kw'>if</span> <span class='value identifier id'>value</span> <span class='match op'>=~</span> <span class='regexp val'>/TRUE/i</span>
-<span class='end end kw'>end</span>
-</pre>
-    </td>
-  </tr>
-</table>
-</div>
-  </div>
-</div>
-    <div id="footer">
-  Generated on Tue Nov 30 11:09:43 2010 by
-  <a href="http://yardoc.org" title="Yay! A Ruby Documentation Tool" target="_parent">yard</a>
-  0.6.1 (ruby-1.8.6).
-</div>
-  </body>
-</html>

data/examples/galena/doc/CaTissue.html DELETED Viewed

@@ -1,93 +0,0 @@
-<!DOCTYPE html PUBLIC "-//W3C//DTD XHTML 1.0 Transitional//EN"
-  "http://www.w3.org/TR/xhtml1/DTD/xhtml1-transitional.dtd">
-<html xmlns="http://www.w3.org/1999/xhtml" xml:lang="en" lang="en">
-  <head>
-    <meta name="Content-Type" content="text/html; charset=utf-8" />
-<title>Module: CaTissue</title>
-<link rel="stylesheet" href="css/style.css" type="text/css" media="screen" charset="utf-8" />
-<link rel="stylesheet" href="css/common.css" type="text/css" media="screen" charset="utf-8" />
-<script type="text/javascript" charset="utf-8">
-  relpath = '';
-  if (relpath != '') relpath += '/';
-</script>
-<script type="text/javascript" charset="utf-8" src="js/jquery.js"></script>
-<script type="text/javascript" charset="utf-8" src="js/app.js"></script>
-  </head>
-  <body>
-    <script type="text/javascript" charset="utf-8">
-      if (window.top.frames.main) document.body.className = 'frames';
-    </script>
-    <div id="header">
-      <div id="menu">
-    <a href="_index.html">Index (C)</a> &raquo;
-    <span class="title">CaTissue</span>
-  <div class="noframes"><span class="title">(</span><a href="." target="_top">no frames</a><span class="title">)</span></div>
-</div>
-      <div id="search">
-  <a id="class_list_link" href="#">Class List</a>
-  <a id="method_list_link" href="#">Method List</a>
-  <a id ="file_list_link" href="#">File List</a>
-</div>
-      <div class="clear"></div>
-    </div>
-    <iframe id="search_frame"></iframe>
-    <div id="content"><h1>Module: CaTissue
-</h1>
-<dl class="box">
-    <dt class="r1 last">Defined in:</dt>
-    <dd class="r1 last">examples/galena/lib/galena/migration/filter_shims.rb<span class="defines">,<br />
-  examples/galena/lib/galena/migration/frozen_shims.rb</span>
-</dd>
-</dl>
-<div class="clear"></div>
-<h2>Defined Under Namespace</h2>
-<p class="children">
-      <strong class="classes">Classes:</strong> <span class='object_link'><a href="CaTissue/Participant.html" title="CaTissue::Participant (class)">Participant</a></span>, <span class='object_link'><a href="CaTissue/SpecimenCollectionGroup.html" title="CaTissue::SpecimenCollectionGroup (class)">SpecimenCollectionGroup</a></span>, <span class='object_link'><a href="CaTissue/StorageContainer.html" title="CaTissue::StorageContainer (class)">StorageContainer</a></span>, <span class='object_link'><a href="CaTissue/TissueSpecimen.html" title="CaTissue::TissueSpecimen (class)">TissueSpecimen</a></span>
-</p>
-</div>
-    <div id="footer">
-  Generated on Tue Nov 30 11:09:43 2010 by
-  <a href="http://yardoc.org" title="Yay! A Ruby Documentation Tool" target="_parent">yard</a>
-  0.6.1 (ruby-1.8.6).
-</div>
-  </body>
-</html>