RubyGems - caruby-tissue - Versions diffs - 1.2.2 → 1.2.3 - Mend

caruby-tissue 1.2.2 → 1.2.3

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data/examples/galena/doc/Galena/Seed.html DELETED Viewed

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-<!DOCTYPE html PUBLIC "-//W3C//DTD XHTML 1.0 Transitional//EN"
-  "http://www.w3.org/TR/xhtml1/DTD/xhtml1-transitional.dtd">
-<html xmlns="http://www.w3.org/1999/xhtml" xml:lang="en" lang="en">
-  <head>
-    <meta name="Content-Type" content="text/html; charset=utf-8" />
-<title>Module: Galena::Seed</title>
-<link rel="stylesheet" href="../css/style.css" type="text/css" media="screen" charset="utf-8" />
-<link rel="stylesheet" href="../css/common.css" type="text/css" media="screen" charset="utf-8" />
-<script type="text/javascript" charset="utf-8">
-  relpath = '..';
-  if (relpath != '') relpath += '/';
-</script>
-<script type="text/javascript" charset="utf-8" src="../js/jquery.js"></script>
-<script type="text/javascript" charset="utf-8" src="../js/app.js"></script>
-  </head>
-  <body>
-    <script type="text/javascript" charset="utf-8">
-      if (window.top.frames.main) document.body.className = 'frames';
-    </script>
-    <div id="header">
-      <div id="menu">
-    <a href="../_index.html">Index (S)</a> &raquo;
-    <span class='title'><span class='object_link'><a href="../Galena.html" title="Galena (module)">Galena</a></span></span>
-     &raquo;
-    <span class="title">Seed</span>
-  <div class="noframes"><span class="title">(</span><a href="." target="_top">no frames</a><span class="title">)</span></div>
-</div>
-      <div id="search">
-  <a id="class_list_link" href="#">Class List</a>
-  <a id="method_list_link" href="#">Method List</a>
-  <a id ="file_list_link" href="#">File List</a>
-</div>
-      <div class="clear"></div>
-    </div>
-    <iframe id="search_frame"></iframe>
-    <div id="content"><h1>Module: Galena::Seed
-</h1>
-<dl class="box">
-    <dt class="r1 last">Defined in:</dt>
-    <dd class="r1 last">examples/galena/lib/galena/seed/defaults.rb</dd>
-</dl>
-<div class="clear"></div>
-<h2>Overview</h2><div class="docstring">
-  <div class="discussion">
-    <p>
-Galena example utility module to populate the database with pre-defined
-administrative objects.
-</p>
-  </div>
-</div>
-<div class="tags">
-</div><h2>Defined Under Namespace</h2>
-<p class="children">
-      <strong class="classes">Classes:</strong> <span class='object_link'><a href="Seed/Defaults.html" title="Galena::Seed::Defaults (class)">Defaults</a></span>
-</p>
-    <h2>
-      Class Method Summary
-      <small>(<a href="#" class="summary_toggle">collapse</a>)</small>
-    </h2>
-    <ul class="summary">
-        <li class="public ">
-  <span class="summary_signature">
-      <a href="#defaults-class_method" title="defaults (class method)">+ (Defaults) <strong>defaults</strong> </a>
-  </span>
-    <span class="summary_desc"><div class='inline'><p>
-The defaults instance.
-</p>
-</div></span>
-</li>
-    </ul>
-  <div id="class_method_details" class="method_details_list">
-    <h2>Class Method Details</h2>
-      <div class="method_details first">
-  <p class="signature first" id="defaults-class_method">
-    + (<tt><span class='object_link'><a href="Seed/Defaults.html" title="Galena::Seed::Defaults (class)">Defaults</a></span></tt>) <strong>defaults</strong>
-</p><div class="docstring">
-  <div class="discussion">
-    <p>
-The defaults instance
-</p>
-  </div>
-</div>
-<div class="tags">
-  <h3>Returns:</h3>
-<ul class="return">
-    <li>
-        <span class='type'>(<tt><span class='object_link'><a href="Seed/Defaults.html" title="Galena::Seed::Defaults (class)">Defaults</a></span></tt>)</span>
-        &mdash;
-        <div class='inline'><p>
-the defaults instance
-</p>
-</div>
-    </li>
-</ul>
-</div><table class="source_code">
-  <tr>
-    <td>
-      <pre class="lines">
-13
-14
-15</pre>
-    </td>
-    <td>
-      <pre class="code"><span class="info file"># File 'examples/galena/lib/galena/seed/defaults.rb', line 13</span>
-<span class='def def kw'>def</span> <span class='self self kw'>self</span><span class='dot token'>.</span><span class='defaults identifier id'>defaults</span>
-  <span class='Defaults constant id'>Defaults</span><span class='dot token'>.</span><span class='instance identifier id'>instance</span>
-<span class='end end kw'>end</span>
-</pre>
-    </td>
-  </tr>
-</table>
-</div>
-  </div>
-</div>
-    <div id="footer">
-  Generated on Tue Nov 30 11:09:43 2010 by
-  <a href="http://yardoc.org" title="Yay! A Ruby Documentation Tool" target="_parent">yard</a>
-  0.6.1 (ruby-1.8.6).
-</div>
-  </body>
-</html>

data/examples/galena/doc/Galena.html DELETED Viewed

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-<!DOCTYPE html PUBLIC "-//W3C//DTD XHTML 1.0 Transitional//EN"
-  "http://www.w3.org/TR/xhtml1/DTD/xhtml1-transitional.dtd">
-<html xmlns="http://www.w3.org/1999/xhtml" xml:lang="en" lang="en">
-  <head>
-    <meta name="Content-Type" content="text/html; charset=utf-8" />
-<title>Module: Galena</title>
-<link rel="stylesheet" href="css/style.css" type="text/css" media="screen" charset="utf-8" />
-<link rel="stylesheet" href="css/common.css" type="text/css" media="screen" charset="utf-8" />
-<script type="text/javascript" charset="utf-8">
-  relpath = '';
-  if (relpath != '') relpath += '/';
-</script>
-<script type="text/javascript" charset="utf-8" src="js/jquery.js"></script>
-<script type="text/javascript" charset="utf-8" src="js/app.js"></script>
-  </head>
-  <body>
-    <script type="text/javascript" charset="utf-8">
-      if (window.top.frames.main) document.body.className = 'frames';
-    </script>
-    <div id="header">
-      <div id="menu">
-    <a href="_index.html">Index (G)</a> &raquo;
-    <span class="title">Galena</span>
-  <div class="noframes"><span class="title">(</span><a href="." target="_top">no frames</a><span class="title">)</span></div>
-</div>
-      <div id="search">
-  <a id="class_list_link" href="#">Class List</a>
-  <a id="method_list_link" href="#">Method List</a>
-  <a id ="file_list_link" href="#">File List</a>
-</div>
-      <div class="clear"></div>
-    </div>
-    <iframe id="search_frame"></iframe>
-    <div id="content"><h1>Module: Galena
-</h1>
-<dl class="box">
-    <dt class="r1 last">Defined in:</dt>
-    <dd class="r1 last">examples/galena/lib/galena/seed/defaults.rb</dd>
-</dl>
-<div class="clear"></div>
-<h2>Defined Under Namespace</h2>
-<p class="children">
-      <strong class="modules">Modules:</strong> <span class='object_link'><a href="Galena/Seed.html" title="Galena::Seed (module)">Seed</a></span>
-</p>
-    <h2>
-      Class Method Summary
-      <small>(<a href="#" class="summary_toggle">collapse</a>)</small>
-    </h2>
-    <ul class="summary">
-        <li class="public ">
-  <span class="summary_signature">
-      <a href="#seed-class_method" title="seed (class method)">+ (Object) <strong>seed</strong> </a>
-  </span>
-    <span class="summary_desc"><div class='inline'><p>
-Creates the <span class='object_link'><a href="Galena/Seed/Defaults.html" title="Galena::Seed::Defaults (class)">Seed::Defaults</a></span> administrative objects as necessary.
-</p>
-</div></span>
-</li>
-    </ul>
-  <div id="class_method_details" class="method_details_list">
-    <h2>Class Method Details</h2>
-      <div class="method_details first">
-  <p class="signature first" id="seed-class_method">
-    + (<tt>Object</tt>) <strong>seed</strong>
-</p><div class="docstring">
-  <div class="discussion">
-    <p>
-Creates the <span class='object_link'><a href="Galena/Seed/Defaults.html" title="Galena::Seed::Defaults (class)">Seed::Defaults</a></span> administrative objects as necessary.
-</p>
-  </div>
-</div>
-<div class="tags">
-</div><table class="source_code">
-  <tr>
-    <td>
-      <pre class="lines">
-6
-7
-8</pre>
-    </td>
-    <td>
-      <pre class="code"><span class="info file"># File 'examples/galena/lib/galena/seed/defaults.rb', line 6</span>
-<span class='def def kw'>def</span> <span class='self self kw'>self</span><span class='dot token'>.</span><span class='seed identifier id'>seed</span>
-  <span class='Seed constant id'>Seed</span><span class='dot token'>.</span><span class='defaults identifier id'>defaults</span><span class='dot token'>.</span><span class='ensure_exists identifier id'>ensure_exists</span>
-<span class='end end kw'>end</span>
-</pre>
-    </td>
-  </tr>
-</table>
-</div>
-  </div>
-</div>
-    <div id="footer">
-  Generated on Tue Nov 30 11:09:42 2010 by
-  <a href="http://yardoc.org" title="Yay! A Ruby Documentation Tool" target="_parent">yard</a>
-  0.6.1 (ruby-1.8.6).
-</div>
-  </body>
-</html>

data/examples/galena/doc/_index.html DELETED Viewed

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-<!DOCTYPE html PUBLIC "-//W3C//DTD XHTML 1.0 Transitional//EN"
-  "http://www.w3.org/TR/xhtml1/DTD/xhtml1-transitional.dtd">
-<html xmlns="http://www.w3.org/1999/xhtml" xml:lang="en" lang="en">
-  <head>
-    <meta name="Content-Type" content="text/html; charset=utf-8" />
-<title>Documentation by YARD 0.6.1</title>
-<link rel="stylesheet" href="css/style.css" type="text/css" media="screen" charset="utf-8" />
-<link rel="stylesheet" href="css/common.css" type="text/css" media="screen" charset="utf-8" />
-<script type="text/javascript" charset="utf-8">
-  relpath = '';
-  if (relpath != '') relpath += '/';
-</script>
-<script type="text/javascript" charset="utf-8" src="js/jquery.js"></script>
-<script type="text/javascript" charset="utf-8" src="js/app.js"></script>
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-    <script type="text/javascript" charset="utf-8">
-      if (window.top.frames.main) document.body.className = 'frames';
-    </script>
-    <div id="header">
-      <div id="menu">
-    <span class="title"></span>
-  <div class="noframes"><span class="title">(</span><a href="." target="_top">no frames</a><span class="title">)</span></div>
-</div>
-      <div id="search">
-  <a id="class_list_link" href="#">Class List</a>
-  <a id="method_list_link" href="#">Method List</a>
-  <a id ="file_list_link" href="#">File List</a>
-</div>
-      <div class="clear"></div>
-    </div>
-    <iframe id="search_frame"></iframe>
-    <div id="content"><div id="listing">
-  <h1 class="noborder title">Documentation by YARD 0.6.1</h1>
-  <h1 class="alphaindex">Alphabetic Index</h1>
-    <h2>File Listing</h2>
-    <ul id="files">
-      <li class="r1"><a href="index.html" title="README">README</a></li>
-    </ul>
-  <div class="clear"></div>
-  <h2>Namespace Listing A-Z</h2>
-  <table>
-    <tr>
-      <td valign='top' width="33%">
-          <ul id="alpha_C" class="alpha">
-            <li class="letter">C</li>
-            <ul>
-                <li>
-                  <span class='object_link'><a href="CaTissue.html" title="CaTissue (module)">CaTissue</a></span>
-                </li>
-            </ul>
-          </ul>
-          <ul id="alpha_D" class="alpha">
-            <li class="letter">D</li>
-            <ul>
-                <li>
-                  <span class='object_link'><a href="Galena/Seed/Defaults.html" title="Galena::Seed::Defaults (class)">Defaults</a></span>
-                    <small>(Galena::Seed)</small>
-                </li>
-            </ul>
-          </ul>
-          <ul id="alpha_G" class="alpha">
-            <li class="letter">G</li>
-            <ul>
-                <li>
-                  <span class='object_link'><a href="Galena.html" title="Galena (module)">Galena</a></span>
-                </li>
-            </ul>
-          </ul>
-          <ul id="alpha_P" class="alpha">
-            <li class="letter">P</li>
-            <ul>
-                <li>
-                  <span class='object_link'><a href="CaTissue/Participant.html" title="CaTissue::Participant (class)">Participant</a></span>
-                    <small>(CaTissue)</small>
-                </li>
-            </ul>
-          </ul>
-          <ul id="alpha_S" class="alpha">
-            <li class="letter">S</li>
-            <ul>
-                <li>
-                  <span class='object_link'><a href="Galena/Seed.html" title="Galena::Seed (module)">Seed</a></span>
-                    <small>(Galena)</small>
-                </li>
-                <li>
-                  <span class='object_link'><a href="CaTissue/SpecimenCollectionGroup.html" title="CaTissue::SpecimenCollectionGroup (class)">SpecimenCollectionGroup</a></span>
-                    <small>(CaTissue)</small>
-                </li>
-                <li>
-                  <span class='object_link'><a href="CaTissue/StorageContainer.html" title="CaTissue::StorageContainer (class)">StorageContainer</a></span>
-                    <small>(CaTissue)</small>
-                </li>
-            </ul>
-          </ul>
-          <ul id="alpha_T" class="alpha">
-            <li class="letter">T</li>
-            <ul>
-                <li>
-                  <span class='object_link'><a href="CaTissue/TissueSpecimen.html" title="CaTissue::TissueSpecimen (class)">TissueSpecimen</a></span>
-                    <small>(CaTissue)</small>
-                </li>
-            </ul>
-          </ul>
-      </td>
-    </tr>
-  </table>
-</div></div>
-    <div id="footer">
-  Generated on Tue Nov 30 11:09:42 2010 by
-  <a href="http://yardoc.org" title="Yay! A Ruby Documentation Tool" target="_parent">yard</a>
-  0.6.1 (ruby-1.8.6).
-</div>
-  </body>
-</html>

data/examples/galena/doc/class_list.html DELETED Viewed

@@ -1,36 +0,0 @@
-<!DOCTYPE html PUBLIC "-//W3C//DTD XHTML 1.0 Transitional//EN"
-  "http://www.w3.org/TR/xhtml1/DTD/xhtml1-transitional.dtd">
-<html>
-  <head>
-    <meta name="Content-Type" content="text/html; charset=utf-8" />
-    <link rel="stylesheet" href="css/full_list.css" type="text/css" media="screen" charset="utf-8" />
-    <link rel="stylesheet" href="css/common.css" type="text/css" media="screen" charset="utf-8" />
-    <script type="text/javascript" charset="utf-8" src="js/jquery.js"></script>
-    <script type="text/javascript" charset="utf-8" src="js/full_list.js"></script>
-    <base id="base_target" target="_parent" />
-  </head>
-  <body>
-    <script type="text/javascript" charset="utf-8">
-      if (window.top.frames.main) {
-        document.getElementById('base_target').target = 'main';
-        document.body.className = 'frames';
-      }
-    </script>
-    <div id="content">
-      <h1 id="full_list_header">Class List</h1>
-      <div id="nav">
-        <a target="_self" href="class_list.html">Classes</a> |
-        <a target="_self" href="method_list.html">Methods</a> |
-        <a target="_self" href="file_list.html">Files</a>
-      </div>
-      <div id="search">Search: <input type="text" /></div>
-      <ul id="full_list" class="class">
-        <li><span class='object_link'><a href="top-level-namespace.html" title=" (root)">Top Level Namespace</a></span></li>
-<li><a class='toggle'></a> <span class='object_link'><a href="CaTissue.html" title="CaTissue (module)">CaTissue</a></span><small class='search_info'>Top Level Namespace</small></li><ul><li><span class='object_link'><a href="CaTissue/Participant.html" title="CaTissue::Participant (class)">Participant</a></span> &lt; Object<small class='search_info'>CaTissue</small></li><li><span class='object_link'><a href="CaTissue/SpecimenCollectionGroup.html" title="CaTissue::SpecimenCollectionGroup (class)">SpecimenCollectionGroup</a></span> &lt; Object<small class='search_info'>CaTissue</small></li><li><span class='object_link'><a href="CaTissue/StorageContainer.html" title="CaTissue::StorageContainer (class)">StorageContainer</a></span> &lt; Object<small class='search_info'>CaTissue</small></li><li><span class='object_link'><a href="CaTissue/TissueSpecimen.html" title="CaTissue::TissueSpecimen (class)">TissueSpecimen</a></span> &lt; Object<small class='search_info'>CaTissue</small></li></ul><li><a class='toggle'></a> <span class='object_link'><a href="Galena.html" title="Galena (module)">Galena</a></span><small class='search_info'>Top Level Namespace</small></li><ul><li><a class='toggle'></a> <span class='object_link'><a href="Galena/Seed.html" title="Galena::Seed (module)">Seed</a></span><small class='search_info'>Galena</small></li><ul><li><span class='object_link'><a href="Galena/Seed/Defaults.html" title="Galena::Seed::Defaults (class)">Defaults</a></span> &lt; Object<small class='search_info'>Galena::Seed</small></li></ul></ul>
-      </ul>
-    </div>
-  </body>
-</html>

data/examples/galena/doc/css/common.css DELETED Viewed

	@@ -1 +0,0 @@
1	- /* Override this file with custom rules */

data/examples/galena/doc/css/full_list.css DELETED Viewed

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-#content.insearch #noresults { margin-left: 7px; }
-ul.collapsed ul, ul.collapsed li { display: none; }
-li a.toggle { cursor: default; position: relative; left: -5px; top: 4px; text-indent: -999px; width: 10px; height: 9px; margin-left: -10px; display: block; float: left; background: url(data:image/png;base64,iVBORw0KGgoAAAANSUhEUgAAABQAAAASCAYAAABb0P4QAAAABHNCSVQICAgIfAhkiAAAAAlwSFlzAAAK8AAACvABQqw0mAAAABx0RVh0U29mdHdhcmUAQWRvYmUgRmlyZXdvcmtzIENTM5jWRgMAAAAVdEVYdENyZWF0aW9uIFRpbWUAMy8xNC8wOeNZPpQAAAE2SURBVDiNrZTBccIwEEXfelIAHUA6CZ24BGaWO+FuzZAK4k6gg5QAdGAq+Bxs2Yqx7BzyL7Llp/VfzZeQhCTc/ezuGzKKnKSzpCxXJM8fwNXda3df5RZETlIt6YUzSQDs93sl8w3wBZxCCE10GM1OcWbWjB2mWgEH4Mfdyxm3PSepBHibgQE2wLe7r4HjEidpnXMYdQPKEMJcsZ4zs2POYQOcaPfwMVOo58zsAdMt18BuoVDPxUJRacELbXv3hUIX2vYmOUvi8C8ydz/ThjXrqKqqLbDIAdsCKBd+Wo7GWa7o9qzOQHVVVXeAbs+yHHCH4aTsaCOQqunmUy1yBUAXkdMIfMlgF5EXLo2OpV/c/Up7jG4hhHcYLgWzAZXUc2b2ixsfvc/RmNNfOXD3Q/oeL9axJE1yT9IOoUu6MGUkAAAAAElFTkSuQmCC) no-repeat bottom left; }
-li.collapsed a.toggle { opacity: 0.5; cursor: default; background-position: top left; }
-li { color: #888; cursor: pointer; }
-li.deprecated { text-decoration: line-through; font-style: italic; }
-li.r1 { background: #f0f0f0; }
-li.r2 { background: #fafafa; }
-li:hover { background: #ddd; }
-li small:before { content: "("; }
-li small:after { content: ")"; }
-li small.search_info { display: none; }
-a:link, a:visited { text-decoration: none; color: #05a; }
-li.clicked { background: #05a; color: #ccc; }
-li.clicked a:link, li.clicked a:visited { color: #eee; }
-li.clicked a.toggle { opacity: 0.5; background-position: bottom right; }
-li.collapsed.clicked a.toggle { background-position: top right; }
-#search input { border: 1px solid #bbb; -moz-border-radius: 3px; -webkit-border-radius: 3px; }
-#nav { margin-left: 10px; font-size: 0.9em; display: none; color: #aaa; }
-#nav a:link, #nav a:visited { color: #358; }
-#nav a:hover { background: transparent; color: #5af; }
-.frames #content h1 { margin-top: 0; }
-.frames li { white-space: nowrap; cursor: normal; }
-.frames li small { display: block; font-size: 0.8em; }
-.frames li small:before { content: ""; }
-.frames li small:after { content: ""; }
-.frames li small.search_info { display: none; }
-.frames #search { width: 170px; position: static; margin: 3px; margin-left: 10px; font-size: 0.9em; color: #888; padding-left: 0; padding-right: 24px; }
-.frames #content.insearch #search { background-position: center right; }
-.frames #search input { width: 110px; }
-.frames #nav { display: block; }
-#full_list.insearch li { display: none; }
-#full_list.insearch li.found { display: list-item; padding-left: 10px; }
-#full_list.insearch li a.toggle { display: none; }
-#full_list.insearch li small.search_info { display: block; }