briard 2.4.1 → 2.6.0

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Files changed (81) hide show
  1. checksums.yaml +4 -4
  2. data/.github/workflows/codeql-analysis.yml +72 -0
  3. data/.github/workflows/rubocop.yml +50 -0
  4. data/.rubocop.yml +144 -620
  5. data/.rubocop_todo.yml +76 -0
  6. data/CHANGELOG.md +22 -0
  7. data/Gemfile +2 -0
  8. data/Gemfile.lock +43 -6
  9. data/Rakefile +1 -1
  10. data/{bolognese.gemspec → briard.gemspec} +46 -38
  11. data/lib/briard/array.rb +2 -2
  12. data/lib/briard/author_utils.rb +79 -71
  13. data/lib/briard/cli.rb +12 -13
  14. data/lib/briard/crossref_utils.rb +73 -61
  15. data/lib/briard/datacite_utils.rb +132 -106
  16. data/lib/briard/doi_utils.rb +10 -10
  17. data/lib/briard/metadata.rb +96 -106
  18. data/lib/briard/metadata_utils.rb +87 -78
  19. data/lib/briard/readers/bibtex_reader.rb +65 -65
  20. data/lib/briard/readers/cff_reader.rb +88 -70
  21. data/lib/briard/readers/citeproc_reader.rb +90 -84
  22. data/lib/briard/readers/codemeta_reader.rb +68 -50
  23. data/lib/briard/readers/crosscite_reader.rb +2 -2
  24. data/lib/briard/readers/crossref_reader.rb +249 -210
  25. data/lib/briard/readers/datacite_json_reader.rb +3 -3
  26. data/lib/briard/readers/datacite_reader.rb +225 -189
  27. data/lib/briard/readers/npm_reader.rb +49 -42
  28. data/lib/briard/readers/ris_reader.rb +82 -80
  29. data/lib/briard/readers/schema_org_reader.rb +182 -159
  30. data/lib/briard/string.rb +1 -1
  31. data/lib/briard/utils.rb +4 -4
  32. data/lib/briard/version.rb +3 -1
  33. data/lib/briard/whitelist_scrubber.rb +11 -4
  34. data/lib/briard/writers/bibtex_writer.rb +14 -8
  35. data/lib/briard/writers/cff_writer.rb +33 -26
  36. data/lib/briard/writers/codemeta_writer.rb +19 -15
  37. data/lib/briard/writers/csv_writer.rb +6 -4
  38. data/lib/briard/writers/datacite_json_writer.rb +8 -2
  39. data/lib/briard/writers/jats_writer.rb +33 -28
  40. data/lib/briard/writers/rdf_xml_writer.rb +1 -1
  41. data/lib/briard/writers/ris_writer.rb +30 -18
  42. data/lib/briard/writers/turtle_writer.rb +1 -1
  43. data/lib/briard.rb +6 -6
  44. data/rubocop.sarif +0 -0
  45. data/spec/array_spec.rb +5 -5
  46. data/spec/author_utils_spec.rb +151 -132
  47. data/spec/datacite_utils_spec.rb +135 -83
  48. data/spec/doi_utils_spec.rb +168 -164
  49. data/spec/find_from_format_spec.rb +69 -69
  50. data/spec/fixtures/vcr_cassettes/Briard_Metadata/sanitize/onlies_keep_specific_tags.yml +65 -0
  51. data/spec/fixtures/vcr_cassettes/Briard_Metadata/sanitize/removes_a_tags.yml +65 -0
  52. data/spec/metadata_spec.rb +91 -90
  53. data/spec/readers/bibtex_reader_spec.rb +43 -38
  54. data/spec/readers/cff_reader_spec.rb +165 -153
  55. data/spec/readers/citeproc_reader_spec.rb +45 -40
  56. data/spec/readers/codemeta_reader_spec.rb +128 -115
  57. data/spec/readers/crosscite_reader_spec.rb +34 -24
  58. data/spec/readers/crossref_reader_spec.rb +1098 -939
  59. data/spec/readers/datacite_json_reader_spec.rb +53 -40
  60. data/spec/readers/datacite_reader_spec.rb +1541 -1337
  61. data/spec/readers/npm_reader_spec.rb +48 -43
  62. data/spec/readers/ris_reader_spec.rb +53 -47
  63. data/spec/readers/schema_org_reader_spec.rb +329 -267
  64. data/spec/spec_helper.rb +6 -5
  65. data/spec/utils_spec.rb +371 -347
  66. data/spec/writers/bibtex_writer_spec.rb +143 -143
  67. data/spec/writers/cff_writer_spec.rb +96 -90
  68. data/spec/writers/citation_writer_spec.rb +34 -33
  69. data/spec/writers/citeproc_writer_spec.rb +226 -224
  70. data/spec/writers/codemeta_writer_spec.rb +18 -16
  71. data/spec/writers/crosscite_writer_spec.rb +91 -73
  72. data/spec/writers/crossref_writer_spec.rb +99 -91
  73. data/spec/writers/csv_writer_spec.rb +70 -70
  74. data/spec/writers/datacite_json_writer_spec.rb +78 -68
  75. data/spec/writers/datacite_writer_spec.rb +417 -322
  76. data/spec/writers/jats_writer_spec.rb +177 -161
  77. data/spec/writers/rdf_xml_writer_spec.rb +68 -63
  78. data/spec/writers/ris_writer_spec.rb +162 -162
  79. data/spec/writers/turtle_writer_spec.rb +47 -47
  80. metadata +250 -160
  81. data/.github/workflows/release.yml +0 -47
data/spec/spec_helper.rb CHANGED
@@ -34,7 +34,7 @@ RSpec.configure do |config|
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  end
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  def fixture_path
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- File.expand_path("../fixtures", __FILE__) + '/'
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+ "#{File.expand_path('fixtures', __dir__)}/"
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  end
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  # This code was adapted from Thor, available under MIT-LICENSE
@@ -52,7 +52,7 @@ def capture(stream)
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  result
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  end
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- def capture_stdout(&block)
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+ def capture_stdout
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  original_stdout = $stdout
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  $stdout = fake = StringIO.new
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  begin
@@ -63,7 +63,7 @@ def capture_stdout(&block)
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  fake.string
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  end
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- def capture_stderr(&block)
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+ def capture_stderr
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  original_stderr = $stderr
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  $stderr = fake = StringIO.new
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  begin
@@ -77,7 +77,8 @@ end
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  # This code was adapted from Ruby on Rails, available under MIT-LICENSE
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  # Copyright (c) 2004-2013 David Heinemeier Hansson
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  def silence_warnings
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- old_verbose, $VERBOSE = $VERBOSE, nil
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+ old_verbose = $VERBOSE
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+ $VERBOSE = nil
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  yield
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  ensure
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  $VERBOSE = old_verbose
@@ -86,7 +87,7 @@ end
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  alias silence capture
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  VCR.configure do |c|
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- c.cassette_library_dir = "spec/fixtures/vcr_cassettes"
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+ c.cassette_library_dir = 'spec/fixtures/vcr_cassettes'
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  c.hook_into :webmock
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  c.ignore_localhost = true
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  c.ignore_hosts 'codeclimate.com'