briard 2.0
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- checksums.yaml +7 -0
- data/.github/workflows/build.yml +37 -0
- data/.github/workflows/changelog.yml +37 -0
- data/.github/workflows/release.yml +47 -0
- data/.gitignore +59 -0
- data/.rubocop.yml +658 -0
- data/CHANGELOG.md +1 -0
- data/CITATION +16 -0
- data/Gemfile +3 -0
- data/Gemfile.lock +226 -0
- data/LICENSE.md +21 -0
- data/README.md +1030 -0
- data/Rakefile +13 -0
- data/bin/briard +9 -0
- data/bolognese.gemspec +59 -0
- data/lib/briard/.env.example +3 -0
- data/lib/briard/array.rb +13 -0
- data/lib/briard/author_utils.rb +166 -0
- data/lib/briard/cli.rb +58 -0
- data/lib/briard/crossref_utils.rb +336 -0
- data/lib/briard/datacite_utils.rb +395 -0
- data/lib/briard/doi_utils.rb +65 -0
- data/lib/briard/metadata.rb +285 -0
- data/lib/briard/metadata_utils.rb +215 -0
- data/lib/briard/pubmed.rb +36 -0
- data/lib/briard/readers/bibtex_reader.rb +100 -0
- data/lib/briard/readers/citeproc_reader.rb +119 -0
- data/lib/briard/readers/codemeta_reader.rb +108 -0
- data/lib/briard/readers/crosscite_reader.rb +14 -0
- data/lib/briard/readers/crossref_reader.rb +368 -0
- data/lib/briard/readers/datacite_json_reader.rb +14 -0
- data/lib/briard/readers/datacite_reader.rb +341 -0
- data/lib/briard/readers/npm_reader.rb +115 -0
- data/lib/briard/readers/ris_reader.rb +114 -0
- data/lib/briard/readers/schema_org_reader.rb +263 -0
- data/lib/briard/string.rb +7 -0
- data/lib/briard/utils.rb +1369 -0
- data/lib/briard/version.rb +3 -0
- data/lib/briard/whitelist_scrubber.rb +47 -0
- data/lib/briard/writers/bibtex_writer.rb +32 -0
- data/lib/briard/writers/citation_writer.rb +14 -0
- data/lib/briard/writers/citeproc_writer.rb +11 -0
- data/lib/briard/writers/codemeta_writer.rb +29 -0
- data/lib/briard/writers/crosscite_writer.rb +11 -0
- data/lib/briard/writers/crossref_writer.rb +11 -0
- data/lib/briard/writers/csv_writer.rb +26 -0
- data/lib/briard/writers/datacite_json_writer.rb +11 -0
- data/lib/briard/writers/datacite_writer.rb +12 -0
- data/lib/briard/writers/jats_writer.rb +134 -0
- data/lib/briard/writers/rdf_xml_writer.rb +11 -0
- data/lib/briard/writers/ris_writer.rb +29 -0
- data/lib/briard/writers/schema_org_writer.rb +51 -0
- data/lib/briard/writers/turtle_writer.rb +11 -0
- data/lib/briard.rb +31 -0
- data/resources/2008/09/xsd.xsl +997 -0
- data/resources/crossref/AccessIndicators.xsd +47 -0
- data/resources/crossref/JATS-journalpublishing1-3d2-mathml3-elements.xsd +10130 -0
- data/resources/crossref/JATS-journalpublishing1-3d2-mathml3.xsd +48 -0
- data/resources/crossref/JATS-journalpublishing1-elements.xsd +8705 -0
- data/resources/crossref/JATS-journalpublishing1-mathml3-elements.xsd +8608 -0
- data/resources/crossref/JATS-journalpublishing1-mathml3.xsd +49 -0
- data/resources/crossref/JATS-journalpublishing1.xsd +6176 -0
- data/resources/crossref/clinicaltrials.xsd +61 -0
- data/resources/crossref/common5.3.1.xsd +1530 -0
- data/resources/crossref/crossref5.3.1.xsd +1949 -0
- data/resources/crossref/crossref_query_output3.0.xsd +1097 -0
- data/resources/crossref/fundref.xsd +49 -0
- data/resources/crossref/module-ali.xsd +39 -0
- data/resources/crossref/relations.xsd +444 -0
- data/resources/datacite-contributorType-v4.xsd +35 -0
- data/resources/datacite-dateType-v4.xsd +25 -0
- data/resources/datacite-descriptionType-v4.xsd +19 -0
- data/resources/datacite-funderIdentifierType-v4.xsd +15 -0
- data/resources/datacite-nameType-v4.xsd +10 -0
- data/resources/datacite-relatedIdentifierType-v4.xsd +34 -0
- data/resources/datacite-relationType-v4.xsd +49 -0
- data/resources/datacite-resourceType-v4.xsd +28 -0
- data/resources/datacite-titleType-v4.xsd +14 -0
- data/resources/kernel-2.1/include/datacite-contributorType-v1.1.xsd +22 -0
- data/resources/kernel-2.1/include/datacite-contributorType-v2.xsd +3 -0
- data/resources/kernel-2.1/include/datacite-dateType-v1.1.xsd +31 -0
- data/resources/kernel-2.1/include/datacite-dateType-v2.xsd +3 -0
- data/resources/kernel-2.1/include/datacite-descriptionType-v1.1.xsd +14 -0
- data/resources/kernel-2.1/include/datacite-descriptionType-v2.xsd +3 -0
- data/resources/kernel-2.1/include/datacite-relatedIdentifierType-v1.1.xsd +24 -0
- data/resources/kernel-2.1/include/datacite-relatedIdentifierType-v2.xsd +3 -0
- data/resources/kernel-2.1/include/datacite-relationType-v1.1.xsd +29 -0
- data/resources/kernel-2.1/include/datacite-relationType-v2.xsd +3 -0
- data/resources/kernel-2.1/include/datacite-resourceType-v1.1.xsd +22 -0
- data/resources/kernel-2.1/include/datacite-resourceType-v2.xsd +3 -0
- data/resources/kernel-2.1/include/datacite-titleType-v1.1.xsd +11 -0
- data/resources/kernel-2.1/include/datacite-titleType-v2.xsd +3 -0
- data/resources/kernel-2.1/metadata.xsd +315 -0
- data/resources/kernel-2.2/include/datacite-contributorType-v2.xsd +29 -0
- data/resources/kernel-2.2/include/datacite-dateType-v2.xsd +21 -0
- data/resources/kernel-2.2/include/datacite-descriptionType-v2.xsd +15 -0
- data/resources/kernel-2.2/include/datacite-relatedIdentifierType-v2.xsd +25 -0
- data/resources/kernel-2.2/include/datacite-relationType-v2.xsd +29 -0
- data/resources/kernel-2.2/include/datacite-resourceType-v2.xsd +23 -0
- data/resources/kernel-2.2/include/datacite-titleType-v2.xsd +10 -0
- data/resources/kernel-2.2/metadata.xsd +316 -0
- data/resources/kernel-3/include/datacite-contributorType-v3.1.xsd +35 -0
- data/resources/kernel-3/include/datacite-dateType-v3.xsd +21 -0
- data/resources/kernel-3/include/datacite-descriptionType-v3.xsd +17 -0
- data/resources/kernel-3/include/datacite-relatedIdentifierType-v3.1.xsd +30 -0
- data/resources/kernel-3/include/datacite-relationType-v3.1.xsd +38 -0
- data/resources/kernel-3/include/datacite-resourceType-v3.xsd +26 -0
- data/resources/kernel-3/include/datacite-titleType-v3.xsd +12 -0
- data/resources/kernel-3/include/xml.xsd +286 -0
- data/resources/kernel-3/metadata.xsd +380 -0
- data/resources/kernel-3.0/include/datacite-contributorType-v3.xsd +33 -0
- data/resources/kernel-3.0/include/datacite-dateType-v3.xsd +21 -0
- data/resources/kernel-3.0/include/datacite-descriptionType-v3.xsd +17 -0
- data/resources/kernel-3.0/include/datacite-relatedIdentifierType-v3.xsd +27 -0
- data/resources/kernel-3.0/include/datacite-relationType-v3.xsd +33 -0
- data/resources/kernel-3.0/include/datacite-resourceType-v3.xsd +26 -0
- data/resources/kernel-3.0/include/datacite-titleType-v3.xsd +12 -0
- data/resources/kernel-3.0/include/xml.xsd +286 -0
- data/resources/kernel-3.0/metadata.xsd +377 -0
- data/resources/kernel-3.1/include/datacite-contributorType-v3.1.xsd +35 -0
- data/resources/kernel-3.1/include/datacite-dateType-v3.xsd +21 -0
- data/resources/kernel-3.1/include/datacite-descriptionType-v3.xsd +17 -0
- data/resources/kernel-3.1/include/datacite-relatedIdentifierType-v3.1.xsd +30 -0
- data/resources/kernel-3.1/include/datacite-relationType-v3.1.xsd +38 -0
- data/resources/kernel-3.1/include/datacite-resourceType-v3.xsd +26 -0
- data/resources/kernel-3.1/include/datacite-titleType-v3.xsd +12 -0
- data/resources/kernel-3.1/include/xml.xsd +286 -0
- data/resources/kernel-3.1/metadata.xsd +380 -0
- data/resources/kernel-4/include/datacite-contributorType-v4.xsd +35 -0
- data/resources/kernel-4/include/datacite-dateType-v4.xsd +25 -0
- data/resources/kernel-4/include/datacite-descriptionType-v4.xsd +19 -0
- data/resources/kernel-4/include/datacite-funderIdentifierType-v4.xsd +16 -0
- data/resources/kernel-4/include/datacite-nameType-v4.xsd +10 -0
- data/resources/kernel-4/include/datacite-numberType-v4.xsd +12 -0
- data/resources/kernel-4/include/datacite-relatedIdentifierType-v4.xsd +34 -0
- data/resources/kernel-4/include/datacite-relationType-v4.xsd +51 -0
- data/resources/kernel-4/include/datacite-resourceType-v4.xsd +43 -0
- data/resources/kernel-4/include/datacite-titleType-v4.xsd +14 -0
- data/resources/kernel-4/include/xml.xsd +286 -0
- data/resources/kernel-4/metadata.xsd +707 -0
- data/resources/kernel-4.0/include/datacite-contributorType-v4.xsd +35 -0
- data/resources/kernel-4.0/include/datacite-dateType-v4.xsd +21 -0
- data/resources/kernel-4.0/include/datacite-descriptionType-v4.xsd +19 -0
- data/resources/kernel-4.0/include/datacite-funderIdentifierType-v4.xsd +15 -0
- data/resources/kernel-4.0/include/datacite-relatedIdentifierType-v4.xsd +32 -0
- data/resources/kernel-4.0/include/datacite-relationType-v4.xsd +39 -0
- data/resources/kernel-4.0/include/datacite-resourceType-v4.xsd +26 -0
- data/resources/kernel-4.0/include/datacite-titleType-v4.xsd +14 -0
- data/resources/kernel-4.0/include/xml.xsd +286 -0
- data/resources/kernel-4.0/metadata.xsd +470 -0
- data/resources/kernel-4.1/include/datacite-contributorType-v4.xsd +35 -0
- data/resources/kernel-4.1/include/datacite-dateType-v4.1.xsd +23 -0
- data/resources/kernel-4.1/include/datacite-descriptionType-v4.xsd +19 -0
- data/resources/kernel-4.1/include/datacite-funderIdentifierType-v4.xsd +15 -0
- data/resources/kernel-4.1/include/datacite-nameType-v4.1.xsd +10 -0
- data/resources/kernel-4.1/include/datacite-relatedIdentifierType-v4.xsd +32 -0
- data/resources/kernel-4.1/include/datacite-relationType-v4.1.xsd +46 -0
- data/resources/kernel-4.1/include/datacite-resourceType-v4.1.xsd +28 -0
- data/resources/kernel-4.1/include/datacite-titleType-v4.xsd +14 -0
- data/resources/kernel-4.1/include/xml.xsd +286 -0
- data/resources/kernel-4.1/metadata.xsd +483 -0
- data/resources/kernel-4.2/include/datacite-contributorType-v4.xsd +35 -0
- data/resources/kernel-4.2/include/datacite-dateType-v4.xsd +25 -0
- data/resources/kernel-4.2/include/datacite-descriptionType-v4.xsd +19 -0
- data/resources/kernel-4.2/include/datacite-funderIdentifierType-v4.xsd +15 -0
- data/resources/kernel-4.2/include/datacite-nameType-v4.xsd +10 -0
- data/resources/kernel-4.2/include/datacite-relatedIdentifierType-v4.xsd +34 -0
- data/resources/kernel-4.2/include/datacite-relationType-v4.xsd +49 -0
- data/resources/kernel-4.2/include/datacite-resourceType-v4.xsd +28 -0
- data/resources/kernel-4.2/include/datacite-titleType-v4.xsd +14 -0
- data/resources/kernel-4.2/include/xml.xsd +286 -0
- data/resources/kernel-4.2/metadata.xsd +479 -0
- data/resources/kernel-4.3/include/datacite-contributorType-v4.xsd +35 -0
- data/resources/kernel-4.3/include/datacite-dateType-v4.xsd +25 -0
- data/resources/kernel-4.3/include/datacite-descriptionType-v4.xsd +19 -0
- data/resources/kernel-4.3/include/datacite-funderIdentifierType-v4.xsd +16 -0
- data/resources/kernel-4.3/include/datacite-nameType-v4.xsd +10 -0
- data/resources/kernel-4.3/include/datacite-relatedIdentifierType-v4.xsd +34 -0
- data/resources/kernel-4.3/include/datacite-relationType-v4.xsd +49 -0
- data/resources/kernel-4.3/include/datacite-resourceType-v4.xsd +28 -0
- data/resources/kernel-4.3/include/datacite-titleType-v4.xsd +14 -0
- data/resources/kernel-4.3/include/xml.xsd +286 -0
- data/resources/kernel-4.3/metadata.xsd +515 -0
- data/resources/kernel-4.4/include/datacite-contributorType-v4.xsd +35 -0
- data/resources/kernel-4.4/include/datacite-dateType-v4.xsd +25 -0
- data/resources/kernel-4.4/include/datacite-descriptionType-v4.xsd +19 -0
- data/resources/kernel-4.4/include/datacite-funderIdentifierType-v4.xsd +16 -0
- data/resources/kernel-4.4/include/datacite-nameType-v4.xsd +10 -0
- data/resources/kernel-4.4/include/datacite-numberType-v4.xsd +12 -0
- data/resources/kernel-4.4/include/datacite-relatedIdentifierType-v4.xsd +34 -0
- data/resources/kernel-4.4/include/datacite-relationType-v4.xsd +51 -0
- data/resources/kernel-4.4/include/datacite-resourceType-v4.xsd +43 -0
- data/resources/kernel-4.4/include/datacite-titleType-v4.xsd +14 -0
- data/resources/kernel-4.4/include/xml.xsd +286 -0
- data/resources/kernel-4.4/metadata.xsd +707 -0
- data/resources/oecd/dfg-mappings.json +1866 -0
- data/resources/oecd/for-mappings.json +1099 -0
- data/resources/oecd/fos-mappings.json +198 -0
- data/resources/schema_org/jsonldcontext.json +7477 -0
- data/resources/spdx/licenses.json +5297 -0
- data/resources/xml.xsd +286 -0
- data/spec/array_spec.rb +22 -0
- data/spec/author_utils_spec.rb +193 -0
- data/spec/cli_spec.rb +226 -0
- data/spec/datacite_utils_spec.rb +178 -0
- data/spec/doi_utils_spec.rb +314 -0
- data/spec/find_from_format_spec.rb +114 -0
- data/spec/fixtures/aida.json +82 -0
- data/spec/fixtures/cgimp_package.json +18 -0
- data/spec/fixtures/cit_package.json +19 -0
- data/spec/fixtures/citeproc-no-author.json +26 -0
- data/spec/fixtures/citeproc-no-categories.json +21 -0
- data/spec/fixtures/citeproc.json +30 -0
- data/spec/fixtures/codemeta.json +86 -0
- data/spec/fixtures/codemeta_v2.json +86 -0
- data/spec/fixtures/crosscite.json +63 -0
- data/spec/fixtures/crossref.bib +14 -0
- data/spec/fixtures/crossref.ris +15 -0
- data/spec/fixtures/crossref.xml +606 -0
- data/spec/fixtures/datacite-empty-sizes.xml +57 -0
- data/spec/fixtures/datacite-example-affiliation.xml +114 -0
- data/spec/fixtures/datacite-example-ancientdates-v4.3.xml +29 -0
- data/spec/fixtures/datacite-example-complicated-tba.xml +56 -0
- data/spec/fixtures/datacite-example-complicated-v3.0.xml +48 -0
- data/spec/fixtures/datacite-example-complicated-v4.0.xml +54 -0
- data/spec/fixtures/datacite-example-complicated-v4.1.xml +57 -0
- data/spec/fixtures/datacite-example-dissertation-v4.4.xml +56 -0
- data/spec/fixtures/datacite-example-escaped-text.xml +56 -0
- data/spec/fixtures/datacite-example-full-v4.4.xml +114 -0
- data/spec/fixtures/datacite-example-geolocation-2.xml +141 -0
- data/spec/fixtures/datacite-example-geolocation.xml +66 -0
- data/spec/fixtures/datacite-example-polygon-v4.1.xml +163 -0
- data/spec/fixtures/datacite-example-relateditems.xml +61 -0
- data/spec/fixtures/datacite-example-xs-string.xml +28 -0
- data/spec/fixtures/datacite-formats-with-xs.xml +22 -0
- data/spec/fixtures/datacite-funderIdentifier.xml +78 -0
- data/spec/fixtures/datacite-geolocation-empty.xml +159 -0
- data/spec/fixtures/datacite-geolocationpolygons-multiple.xml +76 -0
- data/spec/fixtures/datacite-metadata-sample-complicated-v2.2.xml +52 -0
- data/spec/fixtures/datacite-multiple-language.xml +38 -0
- data/spec/fixtures/datacite-multiple-rights.xml +59 -0
- data/spec/fixtures/datacite-schema-2.2.xml +80 -0
- data/spec/fixtures/datacite-seriesinformation.xml +41 -0
- data/spec/fixtures/datacite-space-in-sizes.xml +52 -0
- data/spec/fixtures/datacite-xml-lang.xml +51 -0
- data/spec/fixtures/datacite.json +83 -0
- data/spec/fixtures/datacite.xml +40 -0
- data/spec/fixtures/datacite_dataset.xml +58 -0
- data/spec/fixtures/datacite_malformed_creator.xml +52 -0
- data/spec/fixtures/datacite_missing_creator.xml +33 -0
- data/spec/fixtures/datacite_schema_3.xml +58 -0
- data/spec/fixtures/datacite_software.json +21 -0
- data/spec/fixtures/datacite_software_missing_comma.json +18 -0
- data/spec/fixtures/datacite_software_overlapping_keys.json +18 -0
- data/spec/fixtures/datacite_software_version.json +74 -0
- data/spec/fixtures/edam_package.json +12 -0
- data/spec/fixtures/funding_reference.xml +53 -0
- data/spec/fixtures/gtex.xml +71 -0
- data/spec/fixtures/maremma/codemeta.json +36 -0
- data/spec/fixtures/nist.xml +35 -0
- data/spec/fixtures/ns0.xml +2 -0
- data/spec/fixtures/pure.bib +14 -0
- data/spec/fixtures/pure.ris +15 -0
- data/spec/fixtures/pure.xml +188 -0
- data/spec/fixtures/ris_bug.ris +9 -0
- data/spec/fixtures/schema_4.0.xml +140 -0
- data/spec/fixtures/schema_org.json +49 -0
- data/spec/fixtures/schema_org_front-matter.json +32 -0
- data/spec/fixtures/schema_org_geolocation.json +82 -0
- data/spec/fixtures/schema_org_geoshape.json +550 -0
- data/spec/fixtures/schema_org_gtex.json +75 -0
- data/spec/fixtures/schema_org_list.json +12623 -0
- data/spec/fixtures/schema_org_tdl_iodp_invalid_authors.json +25 -0
- data/spec/fixtures/schema_org_topmed.json +53 -0
- data/spec/fixtures/schema_org_type_as_array.json +41 -0
- data/spec/fixtures/vcr_cassettes/Briard_CLI/convert_from_id/crossref/default.yml +121 -0
- data/spec/fixtures/vcr_cassettes/Briard_CLI/convert_from_id/crossref/to_bibtex.yml +121 -0
- data/spec/fixtures/vcr_cassettes/Briard_CLI/convert_from_id/crossref/to_citation.yml +121 -0
- data/spec/fixtures/vcr_cassettes/Briard_CLI/convert_from_id/crossref/to_crossref.yml +121 -0
- data/spec/fixtures/vcr_cassettes/Briard_CLI/convert_from_id/crossref/to_datacite.yml +121 -0
- data/spec/fixtures/vcr_cassettes/Briard_CLI/convert_from_id/crossref/to_jats.yml +121 -0
- data/spec/fixtures/vcr_cassettes/Briard_CLI/convert_from_id/crossref/to_schema_org.yml +121 -0
- data/spec/fixtures/vcr_cassettes/Briard_CLI/convert_from_id/datacite/default.yml +110 -0
- data/spec/fixtures/vcr_cassettes/Briard_CLI/convert_from_id/datacite/to_bibtex.yml +110 -0
- data/spec/fixtures/vcr_cassettes/Briard_CLI/convert_from_id/datacite/to_citation.yml +110 -0
- data/spec/fixtures/vcr_cassettes/Briard_CLI/convert_from_id/datacite/to_datacite.yml +110 -0
- data/spec/fixtures/vcr_cassettes/Briard_CLI/convert_from_id/datacite/to_datacite_json.yml +110 -0
- data/spec/fixtures/vcr_cassettes/Briard_CLI/convert_from_id/datacite/to_jats.yml +110 -0
- data/spec/fixtures/vcr_cassettes/Briard_CLI/convert_from_id/datacite/to_schema_org.yml +110 -0
- data/spec/fixtures/vcr_cassettes/Briard_CLI/convert_from_id/schema_org/default.yml +117 -0
- data/spec/fixtures/vcr_cassettes/Briard_CLI/convert_from_id/schema_org/to_datacite.yml +117 -0
- data/spec/fixtures/vcr_cassettes/Briard_CLI/convert_from_id/schema_org/to_schema_org.yml +117 -0
- data/spec/fixtures/vcr_cassettes/Briard_CLI/find_from_format_by_id/crossref.yml +52 -0
- data/spec/fixtures/vcr_cassettes/Briard_CLI/find_from_format_by_id/datacite.yml +52 -0
- data/spec/fixtures/vcr_cassettes/Briard_CLI/find_from_format_by_id/jalc.yml +52 -0
- data/spec/fixtures/vcr_cassettes/Briard_CLI/find_from_format_by_id/kisti.yml +52 -0
- data/spec/fixtures/vcr_cassettes/Briard_CLI/find_from_format_by_id/medra.yml +52 -0
- data/spec/fixtures/vcr_cassettes/Briard_CLI/find_from_format_by_id/op.yml +52 -0
- data/spec/fixtures/vcr_cassettes/Briard_Metadata/authors_as_string/author.yml +65 -0
- data/spec/fixtures/vcr_cassettes/Briard_Metadata/authors_as_string/no_author.yml +65 -0
- data/spec/fixtures/vcr_cassettes/Briard_Metadata/authors_as_string/single_author.yml +65 -0
- data/spec/fixtures/vcr_cassettes/Briard_Metadata/authors_as_string/with_organization.yml +65 -0
- data/spec/fixtures/vcr_cassettes/Briard_Metadata/change_datacite_metadata/change_state.yml +110 -0
- data/spec/fixtures/vcr_cassettes/Briard_Metadata/change_datacite_metadata/change_title.yml +110 -0
- data/spec/fixtures/vcr_cassettes/Briard_Metadata/change_metadata_as_datacite_xml/change_description.yml +72 -0
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- data/spec/fixtures/vcr_cassettes/Briard_Metadata/write_metadata_as_turtle/BlogPosting_schema_org.yml +117 -0
- data/spec/fixtures/vcr_cassettes/Briard_Metadata/write_metadata_as_turtle/Dataset.yml +61 -0
- data/spec/fixtures/vcr_cassettes/Briard_Metadata/write_metadata_as_turtle/journal_article.yml +72 -0
- data/spec/fixtures/vcr_cassettes/Briard_Metadata/write_metadata_as_turtle/with_pages.yml +69 -0
- data/spec/fixtures/vivli.xml +1 -0
- data/spec/metadata_spec.rb +165 -0
- data/spec/readers/bibtex_reader_spec.rb +63 -0
- data/spec/readers/citeproc_reader_spec.rb +61 -0
- data/spec/readers/codemeta_reader_spec.rb +138 -0
- data/spec/readers/crosscite_reader_spec.rb +41 -0
- data/spec/readers/crossref_reader_spec.rb +1117 -0
- data/spec/readers/datacite_json_reader_spec.rb +80 -0
- data/spec/readers/datacite_reader_spec.rb +1655 -0
- data/spec/readers/npm_reader_spec.rb +66 -0
- data/spec/readers/ris_reader_spec.rb +75 -0
- data/spec/readers/schema_org_reader_spec.rb +376 -0
- data/spec/spec_helper.rb +94 -0
- data/spec/utils_spec.rb +617 -0
- data/spec/writers/bibtex_writer_spec.rb +195 -0
- data/spec/writers/citation_writer_spec.rb +52 -0
- data/spec/writers/citeproc_writer_spec.rb +296 -0
- data/spec/writers/codemeta_writer_spec.rb +45 -0
- data/spec/writers/crosscite_writer_spec.rb +122 -0
- data/spec/writers/crossref_writer_spec.rb +88 -0
- data/spec/writers/csv_writer_spec.rb +94 -0
- data/spec/writers/datacite_json_writer_spec.rb +90 -0
- data/spec/writers/datacite_writer_spec.rb +428 -0
- data/spec/writers/jats_writer_spec.rb +193 -0
- data/spec/writers/rdf_xml_writer_spec.rb +86 -0
- data/spec/writers/ris_writer_spec.rb +208 -0
- data/spec/writers/schema_org_writer_spec.rb +369 -0
- data/spec/writers/turtle_writer_spec.rb +84 -0
- metadata +1347 -0
@@ -0,0 +1,119 @@
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# frozen_string_literal: true
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module Briard
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module Readers
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module CiteprocReader
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CP_TO_SO_TRANSLATIONS = {
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"song" => "AudioObject",
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"post-weblog" => "BlogPosting",
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"dataset" => "Dataset",
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"graphic" => "ImageObject",
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"motion_picture" => "Movie",
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"article-journal" => "ScholarlyArticle",
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"broadcast" => "VideoObject",
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"webpage" => "WebPage"
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}
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CP_TO_RIS_TRANSLATIONS = {
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"post-weblog" => "BLOG",
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"dataset" => "DATA",
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"graphic" => "FIGURE",
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"book" => "BOOK",
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"motion_picture" => "MPCT",
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"article-journal" => "JOUR",
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"broadcast" => "MPCT",
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"webpage" => "ELEC"
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}
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def read_citeproc(string: nil, **options)
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if string.present?
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errors = jsonlint(string)
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return { "errors" => errors } if errors.present?
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end
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read_options = ActiveSupport::HashWithIndifferentAccess.new(options.except(:doi, :id, :url, :sandbox, :validate, :ra))
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meta = string.present? ? Maremma.from_json(string) : {}
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citeproc_type = meta.fetch("type", nil)
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schema_org = CP_TO_SO_TRANSLATIONS[citeproc_type] || "CreativeWork"
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types = {
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"resourceTypeGeneral" => Briard::Utils::CP_TO_DC_TRANSLATIONS[citeproc_type],
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"reourceType" => meta.fetch("additionalType", nil),
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"schemaOrg" => schema_org,
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"citeproc" => citeproc_type,
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"bibtex" => Briard::Utils::SO_TO_BIB_TRANSLATIONS[schema_org] || "misc",
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"ris" => CP_TO_RIS_TRANSLATIONS[schema_org] || "GEN"
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}.compact
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creators = if meta.fetch("author", nil).present?
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get_authors(from_citeproc(Array.wrap(meta.fetch("author", nil))))
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else
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[{ "nameType" => "Organizational", "name" => ":(unav)" }]
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end
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contributors = get_authors(from_citeproc(Array.wrap(meta.fetch("editor", nil))))
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dates = if date = get_date_from_date_parts(meta.fetch("issued", nil))
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if Date.edtf(date).present?
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[{ "date" => date,
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"dateType" => "Issued" }]
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end
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end
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publication_year = get_date_from_date_parts(meta.fetch("issued", nil)).to_s[0..3]
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rights_list = if meta.fetch("copyright", nil)
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[hsh_to_spdx("rightsURI" => meta.fetch("copyright"))]
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end
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related_identifiers = if meta.fetch("container-title", nil).present? && meta.fetch("ISSN", nil).present?
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[{ "type" => "Periodical",
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"relationType" => "IsPartOf",
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"relatedIdentifierType" => "ISSN",
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"title" => meta.fetch("container-title", nil),
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"relatedIdentifier" => meta.fetch("ISSN", nil) }.compact]
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end
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container = if meta.fetch("container-title", nil).present?
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first_page = meta.fetch("page", nil).present? ? meta.fetch("page").split("-").map(&:strip)[0] : nil
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last_page = meta.fetch("page", nil).present? ? meta.fetch("page").split("-").map(&:strip)[1] : nil
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{ "type" => "Periodical",
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"title" => meta.fetch("container-title", nil),
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"identifier" => meta.fetch("ISSN", nil),
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"identifierType" => meta.fetch("ISSN", nil).present? ? "ISSN" : nil,
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"volume" => meta.fetch("volume", nil),
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"issue" => meta.fetch("issue", nil),
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"firstPage" => first_page,
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"lastPage" => last_page
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}.compact
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else
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nil
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end
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id = normalize_id(meta.fetch("id", nil) || meta.fetch("DOI", nil))
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state = id.present? || read_options.present? ? "findable" : "not_found"
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subjects = Array.wrap(meta.fetch("categories", nil)).reduce([]) do |sum, subject|
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sum += name_to_fos(subject)
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sum
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end
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{ "id" => id,
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"types" => types,
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"doi" => doi_from_url(id),
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"url" => normalize_id(meta.fetch("URL", nil)),
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"titles" => [{ "title" => meta.fetch("title", nil) }],
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"creators" => creators,
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"contributors" => contributors,
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"container" => container,
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"publisher" => meta.fetch("publisher", nil),
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"related_identifiers" => related_identifiers,
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"dates" => dates,
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"publication_year" => publication_year,
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"descriptions" => meta.fetch("abstract", nil).present? ? [{ "description" => sanitize(meta.fetch("abstract")), "descriptionType" => "Abstract" }] : [],
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"rights_list" => rights_list,
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"version_info" => meta.fetch("version", nil),
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"subjects" => subjects,
|
114
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"state" => state
|
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}.merge(read_options)
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end
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end
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end
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end
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# frozen_string_literal: true
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module Briard
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module Readers
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5
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module CodemetaReader
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def get_codemeta(id: nil, **options)
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7
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return { "string" => nil, "state" => "not_found" } unless id.present?
|
8
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id = normalize_id(id)
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9
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response = Maremma.get(github_as_codemeta_url(id), accept: "json", raw: true)
|
10
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string = response.body.fetch("data", nil)
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|
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{ "string" => string }
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13
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end
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15
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def read_codemeta(string: nil, **options)
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if string.present?
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errors = jsonlint(string)
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18
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return { "errors" => errors } if errors.present?
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19
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end
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|
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read_options = ActiveSupport::HashWithIndifferentAccess.new(options.except(:doi, :id, :url, :sandbox, :validate, :ra))
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22
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|
23
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meta = string.present? ? Maremma.from_json(string) : {}
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24
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|
25
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identifiers = Array.wrap(meta.fetch("identifier", nil)).map do |r|
|
26
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r = normalize_id(r) if r.is_a?(String)
|
27
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if r.is_a?(String) && !r.start_with?("https://doi.org")
|
28
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{ "identifierType" => "URL", "identifier" => r }
|
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elsif r.is_a?(Hash)
|
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{ "identifierType" => get_identifier_type(r["propertyID"]), "identifier" => r["value"] }
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31
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end
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32
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end.compact.uniq
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|
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id = normalize_id(options[:doi] || meta.fetch("@id", nil) || meta.fetch("identifier", nil))
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35
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36
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has_agents = meta.fetch("agents", nil)
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authors = has_agents.nil? ? meta.fetch("authors", nil) : has_agents
|
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creators = get_authors(from_schema_org_creators(Array.wrap(authors)))
|
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+
|
40
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contributors = get_authors(from_schema_org_contributors(Array.wrap(meta.fetch("editor", nil))))
|
41
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dates = []
|
42
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dates << { "date" => meta.fetch("datePublished"), "dateType" => "Issued" } if meta.fetch("datePublished", nil).present?
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dates << { "date" => meta.fetch("dateCreated"), "dateType" => "Created" } if meta.fetch("dateCreated", nil).present?
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dates << { "date" => meta.fetch("dateModified"), "dateType" => "Updated" } if meta.fetch("dateModified", nil).present?
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publication_year = meta.fetch("datePublished")[0..3] if meta.fetch("datePublished", nil).present?
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publisher = meta.fetch("publisher", nil)
|
47
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state = meta.present? || read_options.present? ? "findable" : "not_found"
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schema_org = meta.fetch("@type", nil)
|
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types = {
|
50
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"resourceTypeGeneral" => Briard::Utils::SO_TO_DC_TRANSLATIONS[schema_org],
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51
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"resourceType" => meta.fetch("additionalType", nil),
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52
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"schemaOrg" => schema_org,
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53
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"citeproc" => Briard::Utils::SO_TO_CP_TRANSLATIONS[schema_org] || "article-journal",
|
54
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"bibtex" => Briard::Utils::SO_TO_BIB_TRANSLATIONS[schema_org] || "misc",
|
55
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"ris" => Briard::Utils::SO_TO_RIS_TRANSLATIONS[schema_org] || "GEN"
|
56
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}.compact
|
57
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subjects = Array.wrap(meta.fetch("tags", nil)).reduce([]) do |sum, subject|
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58
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sum += name_to_fos(subject)
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|
60
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sum
|
61
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end
|
62
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+
|
63
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has_title = meta.fetch("title", nil)
|
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titles = has_title.nil? ? [{ "title" => meta.fetch("name", nil) }] : [{ "title" => has_title }]
|
65
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rights_list = meta.fetch("licenseId", nil).present? ? [hsh_to_spdx("rightsIdentifier" => meta.fetch("licenseId"))] : nil
|
66
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+
|
67
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{ "id" => id,
|
68
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+
"types" => types,
|
69
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+
"identifiers" => identifiers,
|
70
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"doi" => doi_from_url(id),
|
71
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"url" => normalize_id(meta.fetch("codeRepository", nil)),
|
72
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+
"titles" => titles,
|
73
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"creators" => creators,
|
74
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"contributors" => contributors,
|
75
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"publisher" => publisher,
|
76
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#{}"is_part_of" => is_part_of,
|
77
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"dates" => dates,
|
78
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"publication_year" => publication_year,
|
79
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"descriptions" => meta.fetch("description", nil).present? ? [{ "description" => sanitize(meta.fetch("description")), "descriptionType" => "Abstract" }] : nil,
|
80
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"rights_list" => rights_list,
|
81
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"version_info" => meta.fetch("version", nil),
|
82
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"subjects" => subjects,
|
83
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+
"state" => state
|
84
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+
}.merge(read_options)
|
85
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+
end
|
86
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+
|
87
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+
# def related_identifiers(relation_type)
|
88
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+
# normalize_ids(ids: metadata.fetch(relation_type, nil), relation_type: relation_type)
|
89
|
+
# end
|
90
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+
#
|
91
|
+
# def same_as
|
92
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+
# related_identifiers("isIdenticalTo")
|
93
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+
# end
|
94
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+
#
|
95
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+
# def is_part_of
|
96
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+
# related_identifiers("isPartOf")
|
97
|
+
# end
|
98
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+
#
|
99
|
+
# def has_part
|
100
|
+
# related_identifiers("hasPart")
|
101
|
+
# end
|
102
|
+
#
|
103
|
+
# def citation
|
104
|
+
# related_identifiers("citation")
|
105
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+
# end
|
106
|
+
end
|
107
|
+
end
|
108
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+
end
|
@@ -0,0 +1,14 @@
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1
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# frozen_string_literal: true
|
2
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+
|
3
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+
module Briard
|
4
|
+
module Readers
|
5
|
+
module CrossciteReader
|
6
|
+
def read_crosscite(string: nil, **options)
|
7
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+
errors = jsonlint(string)
|
8
|
+
return { "errors" => errors } if errors.present?
|
9
|
+
|
10
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+
string.present? ? Maremma.from_json(string) : {}
|
11
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+
end
|
12
|
+
end
|
13
|
+
end
|
14
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+
end
|
@@ -0,0 +1,368 @@
|
|
1
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+
# frozen_string_literal: true
|
2
|
+
|
3
|
+
module Briard
|
4
|
+
module Readers
|
5
|
+
module CrossrefReader
|
6
|
+
# CrossRef types from https://api.crossref.org/types
|
7
|
+
def get_crossref(id: nil, **options)
|
8
|
+
return { "string" => nil, "state" => "not_found" } unless id.present?
|
9
|
+
|
10
|
+
doi = doi_from_url(id)
|
11
|
+
url = "https://api.crossref.org/works/#{doi}/transform/application/vnd.crossref.unixsd+xml"
|
12
|
+
response = Maremma.get(url, accept: "text/xml;charset=utf-8", raw: true)
|
13
|
+
string = response.body.fetch("data", nil)
|
14
|
+
string = Nokogiri::XML(string, nil, 'UTF-8', &:noblanks).to_s if string.present?
|
15
|
+
|
16
|
+
{ "string" => string }
|
17
|
+
end
|
18
|
+
|
19
|
+
def read_crossref(string: nil, **options)
|
20
|
+
read_options = ActiveSupport::HashWithIndifferentAccess.new(options.except(:doi, :id, :url, :sandbox, :validate, :ra))
|
21
|
+
|
22
|
+
if string.present?
|
23
|
+
m = Maremma.from_xml(string).dig("crossref_result", "query_result", "body", "query", "doi_record") || {}
|
24
|
+
meta = m.dig("doi_record", "crossref", "error").nil? ? m : {}
|
25
|
+
|
26
|
+
# query contains information from outside metadata schema, e.g. publisher name
|
27
|
+
query = Maremma.from_xml(string).dig("crossref_result", "query_result", "body", "query") || {}
|
28
|
+
else
|
29
|
+
meta = {}
|
30
|
+
query = {}
|
31
|
+
end
|
32
|
+
|
33
|
+
# model should be one of book, conference, database, dissertation, journal, peer_review, posted_content,
|
34
|
+
# report_paper, sa_component, standard
|
35
|
+
model = meta.dig("crossref").to_h.keys.last
|
36
|
+
|
37
|
+
resource_type = nil
|
38
|
+
bibliographic_metadata = {}
|
39
|
+
program_metadata = {}
|
40
|
+
journal_metadata = nil
|
41
|
+
journal_issue = {}
|
42
|
+
journal_metadata = nil
|
43
|
+
publisher = query.dig("crm_item", 0)
|
44
|
+
publisher = nil unless publisher.is_a?(String)
|
45
|
+
|
46
|
+
case model
|
47
|
+
when "book"
|
48
|
+
book_metadata = meta.dig("crossref", "book", "book_metadata")
|
49
|
+
book_series_metadata = meta.dig("crossref", "book", "book_series_metadata")
|
50
|
+
book_set_metadata = meta.dig("crossref", "book", "book_set_metadata")
|
51
|
+
bibliographic_metadata = meta.dig("crossref", "book", "content_item") || book_metadata || book_series_metadata || book_set_metadata
|
52
|
+
resource_type = bibliographic_metadata.fetch("component_type", nil) ? "book-" + bibliographic_metadata.fetch("component_type") : "book"
|
53
|
+
# publisher = if book_metadata.present?
|
54
|
+
# book_metadata.dig("publisher", "publisher_name")
|
55
|
+
# elsif book_series_metadata.present?
|
56
|
+
# book_series_metadata.dig("publisher", "publisher_name")
|
57
|
+
# end
|
58
|
+
when "conference"
|
59
|
+
event_metadata = meta.dig("crossref", "conference", "event_metadata") || {}
|
60
|
+
bibliographic_metadata = meta.dig("crossref", "conference", "conference_paper").to_h
|
61
|
+
when "journal"
|
62
|
+
journal_metadata = meta.dig("crossref", "journal", "journal_metadata") || {}
|
63
|
+
journal_issue = meta.dig("crossref", "journal", "journal_issue") || {}
|
64
|
+
journal_article = meta.dig("crossref", "journal", "journal_article") || {}
|
65
|
+
bibliographic_metadata = journal_article.presence || journal_issue.presence || journal_metadata
|
66
|
+
program_metadata = bibliographic_metadata.dig("crossmark", "custom_metadata", "program") || bibliographic_metadata.dig("program")
|
67
|
+
resource_type = if journal_article.present?
|
68
|
+
"journal_article"
|
69
|
+
elsif journal_issue.present?
|
70
|
+
"journal_issue"
|
71
|
+
else
|
72
|
+
"journal"
|
73
|
+
end
|
74
|
+
when "posted_content"
|
75
|
+
bibliographic_metadata = meta.dig("crossref", "posted_content").to_h
|
76
|
+
publisher ||= bibliographic_metadata.dig("institution", "institution_name")
|
77
|
+
when "sa_component"
|
78
|
+
bibliographic_metadata = meta.dig("crossref", "sa_component", "component_list", "component").to_h
|
79
|
+
related_identifier = Array.wrap(query.to_h["crm_item"]).find { |cr| cr["name"] == "relation" }
|
80
|
+
journal_metadata = { "relatedIdentifier" => related_identifier.to_h.fetch("__content", nil) }
|
81
|
+
when "database"
|
82
|
+
bibliographic_metadata = meta.dig("crossref", "database", "dataset").to_h
|
83
|
+
resource_type = "dataset"
|
84
|
+
when "report_paper"
|
85
|
+
bibliographic_metadata = meta.dig("crossref", "report_paper", "report_paper_metadata").to_h
|
86
|
+
resource_type = "report"
|
87
|
+
when "peer_review"
|
88
|
+
bibliographic_metadata = meta.dig("crossref", "peer_review")
|
89
|
+
when "dissertation"
|
90
|
+
bibliographic_metadata = meta.dig("crossref", "dissertation")
|
91
|
+
end
|
92
|
+
|
93
|
+
resource_type = (resource_type || model).to_s.underscore.camelcase.presence
|
94
|
+
schema_org = Briard::Utils::CR_TO_SO_TRANSLATIONS[resource_type] || "ScholarlyArticle"
|
95
|
+
types = {
|
96
|
+
"resourceTypeGeneral" => Briard::Utils::CR_TO_DC_TRANSLATIONS[resource_type],
|
97
|
+
"resourceType" => resource_type,
|
98
|
+
"schemaOrg" => schema_org,
|
99
|
+
"citeproc" => Briard::Utils::CR_TO_CP_TRANSLATIONS[resource_type] || "article-journal",
|
100
|
+
"bibtex" => Briard::Utils::CR_TO_BIB_TRANSLATIONS[resource_type] || "misc",
|
101
|
+
"ris" => Briard::Utils::CR_TO_RIS_TRANSLATIONS[resource_type] || "JOUR"
|
102
|
+
}.compact
|
103
|
+
|
104
|
+
titles = if bibliographic_metadata.dig("titles").present?
|
105
|
+
Array.wrap(bibliographic_metadata.dig("titles")).map do |r|
|
106
|
+
if r.blank? || (r["title"].blank? && r["original_language_title"].blank?)
|
107
|
+
nil
|
108
|
+
elsif r["title"].is_a?(String)
|
109
|
+
{ "title" => sanitize(r["title"]) }
|
110
|
+
elsif r["original_language_title"].present?
|
111
|
+
{ "title" => sanitize(r.dig("original_language_title", "__content__")), "lang" => r.dig("original_language_title", "language") }
|
112
|
+
else
|
113
|
+
{ "title" => sanitize(r.dig("title", "__content__")) }.compact
|
114
|
+
end
|
115
|
+
end.compact
|
116
|
+
else
|
117
|
+
[{ "title" => ":(unav)" }]
|
118
|
+
end
|
119
|
+
|
120
|
+
date_published = crossref_date_published(bibliographic_metadata)
|
121
|
+
if date_published.present?
|
122
|
+
date_published = { "date" => date_published, "dateType" => "Issued" }
|
123
|
+
else
|
124
|
+
date_published = Array.wrap(query.to_h["crm_item"]).find { |cr| cr["name"] == "created" }
|
125
|
+
date_published = { "date" => date_published.fetch("__content__", "")[0..9], "dateType" => "Issued" } if date_published.present?
|
126
|
+
end
|
127
|
+
date_updated = Array.wrap(query.to_h["crm_item"]).find { |cr| cr["name"] == "last-update" }
|
128
|
+
date_updated = { "date" => date_updated.fetch("__content__", nil), "dateType" => "Updated" } if date_updated.present?
|
129
|
+
|
130
|
+
date_registered = Array.wrap(query.to_h["crm_item"]).find { |cr| cr["name"] == "deposit-timestamp" }
|
131
|
+
date_registered = get_datetime_from_time(date_registered.fetch("__content__", nil)) if date_registered.present?
|
132
|
+
|
133
|
+
# check that date is valid iso8601 date
|
134
|
+
date_published = nil unless Date.edtf(date_published.to_h["date"]).present?
|
135
|
+
date_updated = nil unless Date.edtf(date_updated.to_h["date"]).present?
|
136
|
+
|
137
|
+
dates = [date_published, date_updated].compact
|
138
|
+
publication_year = date_published.to_h.fetch("date", "")[0..3].presence
|
139
|
+
|
140
|
+
state = meta.present? || read_options.present? ? "findable" : "not_found"
|
141
|
+
|
142
|
+
related_identifiers = Array.wrap(crossref_is_part_of(journal_metadata)) + Array.wrap(crossref_references(bibliographic_metadata))
|
143
|
+
|
144
|
+
container = if journal_metadata.present?
|
145
|
+
issn = normalize_issn(journal_metadata.to_h.fetch("issn", nil))
|
146
|
+
|
147
|
+
{ "type" => "Journal",
|
148
|
+
"identifier" => issn,
|
149
|
+
"identifierType" => issn.present? ? "ISSN" : nil,
|
150
|
+
"title" => parse_attributes(journal_metadata.to_h["full_title"]),
|
151
|
+
"volume" => parse_attributes(journal_issue.dig("journal_volume", "volume")),
|
152
|
+
"issue" => parse_attributes(journal_issue.dig("issue")),
|
153
|
+
"firstPage" => bibliographic_metadata.dig("pages", "first_page") || parse_attributes(journal_article.to_h.dig("publisher_item", "item_number"), first: true),
|
154
|
+
"lastPage" => bibliographic_metadata.dig("pages", "last_page") }.compact
|
155
|
+
|
156
|
+
# By using book_metadata, we can account for where resource_type is `BookChapter` and not assume its a whole book
|
157
|
+
elsif book_metadata.present?
|
158
|
+
identifiers = crossref_alternate_identifiers(book_metadata)
|
159
|
+
|
160
|
+
{
|
161
|
+
"type" => "Book",
|
162
|
+
"title" => book_metadata.dig("titles", "title"),
|
163
|
+
"firstPage" => bibliographic_metadata.dig("pages", "first_page"),
|
164
|
+
"lastPage" => bibliographic_metadata.dig("pages", "last_page"),
|
165
|
+
"identifiers" => identifiers,
|
166
|
+
}.compact
|
167
|
+
|
168
|
+
elsif book_series_metadata.to_h.fetch("series_metadata", nil).present?
|
169
|
+
issn = normalize_issn(book_series_metadata.dig("series_metadata", "issn"))
|
170
|
+
|
171
|
+
{ "type" => "Book Series",
|
172
|
+
"identifier" => issn,
|
173
|
+
"identifierType" => issn.present? ? "ISSN" : nil,
|
174
|
+
"title" => book_series_metadata.dig("series_metadata", "titles", "title"),
|
175
|
+
"volume" => bibliographic_metadata.fetch("volume", nil) }.compact
|
176
|
+
end
|
177
|
+
|
178
|
+
id = normalize_doi(options[:doi] || options[:id] || bibliographic_metadata.dig("doi_data", "doi"))
|
179
|
+
|
180
|
+
# Let sections override this in case of alternative metadata structures, such as book chapters, which
|
181
|
+
# have their meta inside `content_item`, but the main book indentifers inside of `book_metadata`
|
182
|
+
identifiers ||= crossref_alternate_identifiers(bibliographic_metadata)
|
183
|
+
|
184
|
+
{ "id" => id,
|
185
|
+
"types" => types,
|
186
|
+
"doi" => doi_from_url(id),
|
187
|
+
"url" => parse_attributes(bibliographic_metadata.dig("doi_data", "resource"), first: true),
|
188
|
+
"titles" => titles,
|
189
|
+
"identifiers" => identifiers,
|
190
|
+
"creators" => crossref_people(bibliographic_metadata, "author"),
|
191
|
+
"contributors" => crossref_people(bibliographic_metadata, "editor"),
|
192
|
+
"funding_references" => crossref_funding_reference(program_metadata),
|
193
|
+
"publisher" => publisher,
|
194
|
+
"container" => container,
|
195
|
+
"agency" => agency = options[:ra] || "crossref",
|
196
|
+
"related_identifiers" => related_identifiers,
|
197
|
+
"dates" => dates,
|
198
|
+
"publication_year" => publication_year,
|
199
|
+
"descriptions" => crossref_description(bibliographic_metadata),
|
200
|
+
"rights_list" => crossref_license(program_metadata),
|
201
|
+
"version_info" => nil,
|
202
|
+
"subjects" => nil,
|
203
|
+
"language" => nil,
|
204
|
+
"sizes" => nil,
|
205
|
+
"schema_version" => "http://datacite.org/schema/kernel-4",
|
206
|
+
"state" => state,
|
207
|
+
"date_registered" => date_registered
|
208
|
+
}.merge(read_options)
|
209
|
+
end
|
210
|
+
|
211
|
+
def crossref_alternate_identifiers(bibliographic_metadata)
|
212
|
+
if bibliographic_metadata.dig("publisher_item", "item_number").present?
|
213
|
+
Array.wrap(bibliographic_metadata.dig("publisher_item", "item_number")).map do |item|
|
214
|
+
if item.is_a?(String)
|
215
|
+
{ "identifier" => item,
|
216
|
+
"identifierType" => "Publisher ID" }
|
217
|
+
else
|
218
|
+
{ "identifier" => item.fetch("__content__", nil),
|
219
|
+
"identifierType" => item.fetch("item_number_type", nil) || "Publisher ID" }
|
220
|
+
end
|
221
|
+
end
|
222
|
+
elsif parse_attributes(bibliographic_metadata.fetch("item_number", nil)).present?
|
223
|
+
[{ "identifier" => parse_attributes(bibliographic_metadata.fetch("item_number", nil)),
|
224
|
+
"identifierType" => parse_attributes(bibliographic_metadata.dig("item_number", "item_number_type")) || "Publisher ID" }]
|
225
|
+
elsif parse_attributes(bibliographic_metadata.fetch("isbn", nil)).present?
|
226
|
+
[{ "identifier" => parse_attributes(bibliographic_metadata.fetch("isbn", nil), first: true),
|
227
|
+
"identifierType" => "ISBN" }]
|
228
|
+
else
|
229
|
+
[]
|
230
|
+
end
|
231
|
+
end
|
232
|
+
|
233
|
+
def crossref_description(bibliographic_metadata)
|
234
|
+
abstract = Array.wrap(bibliographic_metadata.dig("abstract")).map do |r|
|
235
|
+
{ "descriptionType" => "Abstract", "description" => sanitize(parse_attributes(r, content: 'p')) }.compact
|
236
|
+
end
|
237
|
+
|
238
|
+
description = Array.wrap(bibliographic_metadata.dig("description")).map do |r|
|
239
|
+
{ "descriptionType" => "Other", "description" => sanitize(parse_attributes(r)) }.compact
|
240
|
+
end
|
241
|
+
|
242
|
+
(abstract + description)
|
243
|
+
end
|
244
|
+
|
245
|
+
def crossref_license(program_metadata)
|
246
|
+
access_indicator = Array.wrap(program_metadata).find { |m| m["name"] == "AccessIndicators" }
|
247
|
+
if access_indicator.present?
|
248
|
+
Array.wrap(access_indicator["license_ref"]).map do |license|
|
249
|
+
hsh_to_spdx("rightsURI" => parse_attributes(license))
|
250
|
+
end.uniq
|
251
|
+
else
|
252
|
+
[]
|
253
|
+
end
|
254
|
+
end
|
255
|
+
|
256
|
+
def crossref_people(bibliographic_metadata, contributor_role)
|
257
|
+
person = bibliographic_metadata.dig("contributors", "person_name") || bibliographic_metadata.dig("person_name")
|
258
|
+
organization = Array.wrap(bibliographic_metadata.dig("contributors", "organization"))
|
259
|
+
person = [{ "name" => ":(unav)", "contributor_role"=>"author" }] if contributor_role == "author" && Array.wrap(person).select { |a| a["contributor_role"] == "author" }.blank? && Array.wrap(organization).select { |a| a["contributor_role"] == "author" }.blank?
|
260
|
+
|
261
|
+
(Array.wrap(person) + Array.wrap(organization)).select { |a| a["contributor_role"] == contributor_role }.map do |a|
|
262
|
+
name_identifiers = normalize_orcid(parse_attributes(a["ORCID"])).present? ? [{ "nameIdentifier" => normalize_orcid(parse_attributes(a["ORCID"])), "nameIdentifierScheme" => "ORCID", "schemeUri"=>"https://orcid.org" }] : nil
|
263
|
+
if a["surname"].present? || a["given_name"].present? || name_identifiers.present?
|
264
|
+
given_name = parse_attributes(a["given_name"])
|
265
|
+
family_name = parse_attributes(a["surname"])
|
266
|
+
affiliation = Array.wrap(a["affiliation"]).map do |a|
|
267
|
+
if a.is_a?(Hash) && a.key?("__content__") && a["__content__"].strip.blank?
|
268
|
+
nil
|
269
|
+
elsif a.is_a?(Hash) && a.key?("__content__")
|
270
|
+
{ "name" => a["__content__"] }
|
271
|
+
elsif a.is_a?(Hash)
|
272
|
+
a
|
273
|
+
elsif a.strip.blank?
|
274
|
+
nil
|
275
|
+
elsif a.is_a?(String)
|
276
|
+
{ "name" => a }
|
277
|
+
end
|
278
|
+
end.compact
|
279
|
+
|
280
|
+
{ "nameType" => "Personal",
|
281
|
+
"nameIdentifiers" => name_identifiers,
|
282
|
+
"name" => [family_name, given_name].compact.join(", "),
|
283
|
+
"givenName" => given_name,
|
284
|
+
"familyName" => family_name,
|
285
|
+
"affiliation" => affiliation.presence,
|
286
|
+
"contributorType" => contributor_role == "editor" ? "Editor" : nil }.compact
|
287
|
+
else
|
288
|
+
{ "nameType" => "Organizational",
|
289
|
+
"name" => a["name"] || a["__content__"] }
|
290
|
+
end
|
291
|
+
end
|
292
|
+
end
|
293
|
+
|
294
|
+
def crossref_funding_reference(program_metadata)
|
295
|
+
fundref = Array.wrap(program_metadata).find { |a| a["name"] == "fundref" } || {}
|
296
|
+
Array.wrap(fundref.fetch("assertion", [])).select { |a| a["name"] == "fundgroup" && a["assertion"].present? }.map do |f|
|
297
|
+
funder_identifier = nil
|
298
|
+
funder_identifier_type = nil
|
299
|
+
funder_name = nil
|
300
|
+
award_title = nil
|
301
|
+
award_number = nil
|
302
|
+
award_uri = nil
|
303
|
+
|
304
|
+
Array.wrap(f.fetch("assertion")).each do |a|
|
305
|
+
if a.fetch("name") == "award_number"
|
306
|
+
award_number = a.fetch("__content__", nil)
|
307
|
+
award_uri = a.fetch("awardURI", nil)
|
308
|
+
elsif a.fetch("name") == "funder_name"
|
309
|
+
funder_name = a.fetch("__content__", nil).to_s.squish.presence
|
310
|
+
funder_identifier = validate_funder_doi(a.dig("assertion", "__content__"))
|
311
|
+
funder_identifier_type = "Crossref Funder ID" if funder_identifier.present?
|
312
|
+
end
|
313
|
+
end
|
314
|
+
|
315
|
+
# funder_name is required in DataCite
|
316
|
+
if funder_name.present?
|
317
|
+
{ "funderIdentifier" => funder_identifier,
|
318
|
+
"funderIdentifierType" => funder_identifier_type,
|
319
|
+
"funderName" => funder_name,
|
320
|
+
"awardTitle" => award_title,
|
321
|
+
"awardNumber" => award_number,
|
322
|
+
"awardUri" => award_uri }.compact
|
323
|
+
else
|
324
|
+
nil
|
325
|
+
end
|
326
|
+
end.compact
|
327
|
+
end
|
328
|
+
|
329
|
+
def crossref_date_published(bibliographic_metadata)
|
330
|
+
pub_date = Array.wrap(bibliographic_metadata.fetch("publication_date", nil)).presence ||
|
331
|
+
Array.wrap(bibliographic_metadata.fetch("acceptance_date", nil))
|
332
|
+
if pub_date.present?
|
333
|
+
get_date_from_parts(pub_date.first["year"], pub_date.first["month"], pub_date.first["day"])
|
334
|
+
else
|
335
|
+
nil
|
336
|
+
end
|
337
|
+
end
|
338
|
+
|
339
|
+
def crossref_is_part_of(model_metadata)
|
340
|
+
if model_metadata.present? && model_metadata.fetch("issn", nil).present?
|
341
|
+
{ "relatedIdentifier" => normalize_issn(model_metadata.fetch("issn", nil)),
|
342
|
+
"relationType" => "IsPartOf",
|
343
|
+
"relatedIdentifierType" => "ISSN",
|
344
|
+
"resourceTypeGeneral" => "Collection" }.compact
|
345
|
+
elsif model_metadata.present? && model_metadata.fetch("relatedIdentifier", nil).present?
|
346
|
+
{ "relatedIdentifier" => model_metadata.fetch("relatedIdentifier", nil),
|
347
|
+
"relationType" => "IsPartOf",
|
348
|
+
"relatedIdentifierType" => "DOI" }.compact
|
349
|
+
else
|
350
|
+
nil
|
351
|
+
end
|
352
|
+
end
|
353
|
+
|
354
|
+
def crossref_references(bibliographic_metadata)
|
355
|
+
refs = bibliographic_metadata.dig("citation_list", "citation")
|
356
|
+
Array.wrap(refs).select { |a| a["doi"].present? }.map do |c|
|
357
|
+
if c["doi"].present?
|
358
|
+
{ "relatedIdentifier" => parse_attributes(c["doi"]).downcase,
|
359
|
+
"relationType" => "References",
|
360
|
+
"relatedIdentifierType" => "DOI" }.compact
|
361
|
+
else
|
362
|
+
nil
|
363
|
+
end
|
364
|
+
end.compact.unwrap
|
365
|
+
end
|
366
|
+
end
|
367
|
+
end
|
368
|
+
end
|
@@ -0,0 +1,14 @@
|
|
1
|
+
# frozen_string_literal: true
|
2
|
+
|
3
|
+
module Briard
|
4
|
+
module Readers
|
5
|
+
module DataciteJsonReader
|
6
|
+
def read_datacite_json(string: nil, **options)
|
7
|
+
errors = jsonlint(string)
|
8
|
+
return { "errors" => errors } if errors.present?
|
9
|
+
|
10
|
+
string.present? ? Maremma.from_json(string).transform_keys! { |key| key.underscore } : {}
|
11
|
+
end
|
12
|
+
end
|
13
|
+
end
|
14
|
+
end
|