briard 2.0
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- checksums.yaml +7 -0
- data/.github/workflows/build.yml +37 -0
- data/.github/workflows/changelog.yml +37 -0
- data/.github/workflows/release.yml +47 -0
- data/.gitignore +59 -0
- data/.rubocop.yml +658 -0
- data/CHANGELOG.md +1 -0
- data/CITATION +16 -0
- data/Gemfile +3 -0
- data/Gemfile.lock +226 -0
- data/LICENSE.md +21 -0
- data/README.md +1030 -0
- data/Rakefile +13 -0
- data/bin/briard +9 -0
- data/bolognese.gemspec +59 -0
- data/lib/briard/.env.example +3 -0
- data/lib/briard/array.rb +13 -0
- data/lib/briard/author_utils.rb +166 -0
- data/lib/briard/cli.rb +58 -0
- data/lib/briard/crossref_utils.rb +336 -0
- data/lib/briard/datacite_utils.rb +395 -0
- data/lib/briard/doi_utils.rb +65 -0
- data/lib/briard/metadata.rb +285 -0
- data/lib/briard/metadata_utils.rb +215 -0
- data/lib/briard/pubmed.rb +36 -0
- data/lib/briard/readers/bibtex_reader.rb +100 -0
- data/lib/briard/readers/citeproc_reader.rb +119 -0
- data/lib/briard/readers/codemeta_reader.rb +108 -0
- data/lib/briard/readers/crosscite_reader.rb +14 -0
- data/lib/briard/readers/crossref_reader.rb +368 -0
- data/lib/briard/readers/datacite_json_reader.rb +14 -0
- data/lib/briard/readers/datacite_reader.rb +341 -0
- data/lib/briard/readers/npm_reader.rb +115 -0
- data/lib/briard/readers/ris_reader.rb +114 -0
- data/lib/briard/readers/schema_org_reader.rb +263 -0
- data/lib/briard/string.rb +7 -0
- data/lib/briard/utils.rb +1369 -0
- data/lib/briard/version.rb +3 -0
- data/lib/briard/whitelist_scrubber.rb +47 -0
- data/lib/briard/writers/bibtex_writer.rb +32 -0
- data/lib/briard/writers/citation_writer.rb +14 -0
- data/lib/briard/writers/citeproc_writer.rb +11 -0
- data/lib/briard/writers/codemeta_writer.rb +29 -0
- data/lib/briard/writers/crosscite_writer.rb +11 -0
- data/lib/briard/writers/crossref_writer.rb +11 -0
- data/lib/briard/writers/csv_writer.rb +26 -0
- data/lib/briard/writers/datacite_json_writer.rb +11 -0
- data/lib/briard/writers/datacite_writer.rb +12 -0
- data/lib/briard/writers/jats_writer.rb +134 -0
- data/lib/briard/writers/rdf_xml_writer.rb +11 -0
- data/lib/briard/writers/ris_writer.rb +29 -0
- data/lib/briard/writers/schema_org_writer.rb +51 -0
- data/lib/briard/writers/turtle_writer.rb +11 -0
- data/lib/briard.rb +31 -0
- data/resources/2008/09/xsd.xsl +997 -0
- data/resources/crossref/AccessIndicators.xsd +47 -0
- data/resources/crossref/JATS-journalpublishing1-3d2-mathml3-elements.xsd +10130 -0
- data/resources/crossref/JATS-journalpublishing1-3d2-mathml3.xsd +48 -0
- data/resources/crossref/JATS-journalpublishing1-elements.xsd +8705 -0
- data/resources/crossref/JATS-journalpublishing1-mathml3-elements.xsd +8608 -0
- data/resources/crossref/JATS-journalpublishing1-mathml3.xsd +49 -0
- data/resources/crossref/JATS-journalpublishing1.xsd +6176 -0
- data/resources/crossref/clinicaltrials.xsd +61 -0
- data/resources/crossref/common5.3.1.xsd +1530 -0
- data/resources/crossref/crossref5.3.1.xsd +1949 -0
- data/resources/crossref/crossref_query_output3.0.xsd +1097 -0
- data/resources/crossref/fundref.xsd +49 -0
- data/resources/crossref/module-ali.xsd +39 -0
- data/resources/crossref/relations.xsd +444 -0
- data/resources/datacite-contributorType-v4.xsd +35 -0
- data/resources/datacite-dateType-v4.xsd +25 -0
- data/resources/datacite-descriptionType-v4.xsd +19 -0
- data/resources/datacite-funderIdentifierType-v4.xsd +15 -0
- data/resources/datacite-nameType-v4.xsd +10 -0
- data/resources/datacite-relatedIdentifierType-v4.xsd +34 -0
- data/resources/datacite-relationType-v4.xsd +49 -0
- data/resources/datacite-resourceType-v4.xsd +28 -0
- data/resources/datacite-titleType-v4.xsd +14 -0
- data/resources/kernel-2.1/include/datacite-contributorType-v1.1.xsd +22 -0
- data/resources/kernel-2.1/include/datacite-contributorType-v2.xsd +3 -0
- data/resources/kernel-2.1/include/datacite-dateType-v1.1.xsd +31 -0
- data/resources/kernel-2.1/include/datacite-dateType-v2.xsd +3 -0
- data/resources/kernel-2.1/include/datacite-descriptionType-v1.1.xsd +14 -0
- data/resources/kernel-2.1/include/datacite-descriptionType-v2.xsd +3 -0
- data/resources/kernel-2.1/include/datacite-relatedIdentifierType-v1.1.xsd +24 -0
- data/resources/kernel-2.1/include/datacite-relatedIdentifierType-v2.xsd +3 -0
- data/resources/kernel-2.1/include/datacite-relationType-v1.1.xsd +29 -0
- data/resources/kernel-2.1/include/datacite-relationType-v2.xsd +3 -0
- data/resources/kernel-2.1/include/datacite-resourceType-v1.1.xsd +22 -0
- data/resources/kernel-2.1/include/datacite-resourceType-v2.xsd +3 -0
- data/resources/kernel-2.1/include/datacite-titleType-v1.1.xsd +11 -0
- data/resources/kernel-2.1/include/datacite-titleType-v2.xsd +3 -0
- data/resources/kernel-2.1/metadata.xsd +315 -0
- data/resources/kernel-2.2/include/datacite-contributorType-v2.xsd +29 -0
- data/resources/kernel-2.2/include/datacite-dateType-v2.xsd +21 -0
- data/resources/kernel-2.2/include/datacite-descriptionType-v2.xsd +15 -0
- data/resources/kernel-2.2/include/datacite-relatedIdentifierType-v2.xsd +25 -0
- data/resources/kernel-2.2/include/datacite-relationType-v2.xsd +29 -0
- data/resources/kernel-2.2/include/datacite-resourceType-v2.xsd +23 -0
- data/resources/kernel-2.2/include/datacite-titleType-v2.xsd +10 -0
- data/resources/kernel-2.2/metadata.xsd +316 -0
- data/resources/kernel-3/include/datacite-contributorType-v3.1.xsd +35 -0
- data/resources/kernel-3/include/datacite-dateType-v3.xsd +21 -0
- data/resources/kernel-3/include/datacite-descriptionType-v3.xsd +17 -0
- data/resources/kernel-3/include/datacite-relatedIdentifierType-v3.1.xsd +30 -0
- data/resources/kernel-3/include/datacite-relationType-v3.1.xsd +38 -0
- data/resources/kernel-3/include/datacite-resourceType-v3.xsd +26 -0
- data/resources/kernel-3/include/datacite-titleType-v3.xsd +12 -0
- data/resources/kernel-3/include/xml.xsd +286 -0
- data/resources/kernel-3/metadata.xsd +380 -0
- data/resources/kernel-3.0/include/datacite-contributorType-v3.xsd +33 -0
- data/resources/kernel-3.0/include/datacite-dateType-v3.xsd +21 -0
- data/resources/kernel-3.0/include/datacite-descriptionType-v3.xsd +17 -0
- data/resources/kernel-3.0/include/datacite-relatedIdentifierType-v3.xsd +27 -0
- data/resources/kernel-3.0/include/datacite-relationType-v3.xsd +33 -0
- data/resources/kernel-3.0/include/datacite-resourceType-v3.xsd +26 -0
- data/resources/kernel-3.0/include/datacite-titleType-v3.xsd +12 -0
- data/resources/kernel-3.0/include/xml.xsd +286 -0
- data/resources/kernel-3.0/metadata.xsd +377 -0
- data/resources/kernel-3.1/include/datacite-contributorType-v3.1.xsd +35 -0
- data/resources/kernel-3.1/include/datacite-dateType-v3.xsd +21 -0
- data/resources/kernel-3.1/include/datacite-descriptionType-v3.xsd +17 -0
- data/resources/kernel-3.1/include/datacite-relatedIdentifierType-v3.1.xsd +30 -0
- data/resources/kernel-3.1/include/datacite-relationType-v3.1.xsd +38 -0
- data/resources/kernel-3.1/include/datacite-resourceType-v3.xsd +26 -0
- data/resources/kernel-3.1/include/datacite-titleType-v3.xsd +12 -0
- data/resources/kernel-3.1/include/xml.xsd +286 -0
- data/resources/kernel-3.1/metadata.xsd +380 -0
- data/resources/kernel-4/include/datacite-contributorType-v4.xsd +35 -0
- data/resources/kernel-4/include/datacite-dateType-v4.xsd +25 -0
- data/resources/kernel-4/include/datacite-descriptionType-v4.xsd +19 -0
- data/resources/kernel-4/include/datacite-funderIdentifierType-v4.xsd +16 -0
- data/resources/kernel-4/include/datacite-nameType-v4.xsd +10 -0
- data/resources/kernel-4/include/datacite-numberType-v4.xsd +12 -0
- data/resources/kernel-4/include/datacite-relatedIdentifierType-v4.xsd +34 -0
- data/resources/kernel-4/include/datacite-relationType-v4.xsd +51 -0
- data/resources/kernel-4/include/datacite-resourceType-v4.xsd +43 -0
- data/resources/kernel-4/include/datacite-titleType-v4.xsd +14 -0
- data/resources/kernel-4/include/xml.xsd +286 -0
- data/resources/kernel-4/metadata.xsd +707 -0
- data/resources/kernel-4.0/include/datacite-contributorType-v4.xsd +35 -0
- data/resources/kernel-4.0/include/datacite-dateType-v4.xsd +21 -0
- data/resources/kernel-4.0/include/datacite-descriptionType-v4.xsd +19 -0
- data/resources/kernel-4.0/include/datacite-funderIdentifierType-v4.xsd +15 -0
- data/resources/kernel-4.0/include/datacite-relatedIdentifierType-v4.xsd +32 -0
- data/resources/kernel-4.0/include/datacite-relationType-v4.xsd +39 -0
- data/resources/kernel-4.0/include/datacite-resourceType-v4.xsd +26 -0
- data/resources/kernel-4.0/include/datacite-titleType-v4.xsd +14 -0
- data/resources/kernel-4.0/include/xml.xsd +286 -0
- data/resources/kernel-4.0/metadata.xsd +470 -0
- data/resources/kernel-4.1/include/datacite-contributorType-v4.xsd +35 -0
- data/resources/kernel-4.1/include/datacite-dateType-v4.1.xsd +23 -0
- data/resources/kernel-4.1/include/datacite-descriptionType-v4.xsd +19 -0
- data/resources/kernel-4.1/include/datacite-funderIdentifierType-v4.xsd +15 -0
- data/resources/kernel-4.1/include/datacite-nameType-v4.1.xsd +10 -0
- data/resources/kernel-4.1/include/datacite-relatedIdentifierType-v4.xsd +32 -0
- data/resources/kernel-4.1/include/datacite-relationType-v4.1.xsd +46 -0
- data/resources/kernel-4.1/include/datacite-resourceType-v4.1.xsd +28 -0
- data/resources/kernel-4.1/include/datacite-titleType-v4.xsd +14 -0
- data/resources/kernel-4.1/include/xml.xsd +286 -0
- data/resources/kernel-4.1/metadata.xsd +483 -0
- data/resources/kernel-4.2/include/datacite-contributorType-v4.xsd +35 -0
- data/resources/kernel-4.2/include/datacite-dateType-v4.xsd +25 -0
- data/resources/kernel-4.2/include/datacite-descriptionType-v4.xsd +19 -0
- data/resources/kernel-4.2/include/datacite-funderIdentifierType-v4.xsd +15 -0
- data/resources/kernel-4.2/include/datacite-nameType-v4.xsd +10 -0
- data/resources/kernel-4.2/include/datacite-relatedIdentifierType-v4.xsd +34 -0
- data/resources/kernel-4.2/include/datacite-relationType-v4.xsd +49 -0
- data/resources/kernel-4.2/include/datacite-resourceType-v4.xsd +28 -0
- data/resources/kernel-4.2/include/datacite-titleType-v4.xsd +14 -0
- data/resources/kernel-4.2/include/xml.xsd +286 -0
- data/resources/kernel-4.2/metadata.xsd +479 -0
- data/resources/kernel-4.3/include/datacite-contributorType-v4.xsd +35 -0
- data/resources/kernel-4.3/include/datacite-dateType-v4.xsd +25 -0
- data/resources/kernel-4.3/include/datacite-descriptionType-v4.xsd +19 -0
- data/resources/kernel-4.3/include/datacite-funderIdentifierType-v4.xsd +16 -0
- data/resources/kernel-4.3/include/datacite-nameType-v4.xsd +10 -0
- data/resources/kernel-4.3/include/datacite-relatedIdentifierType-v4.xsd +34 -0
- data/resources/kernel-4.3/include/datacite-relationType-v4.xsd +49 -0
- data/resources/kernel-4.3/include/datacite-resourceType-v4.xsd +28 -0
- data/resources/kernel-4.3/include/datacite-titleType-v4.xsd +14 -0
- data/resources/kernel-4.3/include/xml.xsd +286 -0
- data/resources/kernel-4.3/metadata.xsd +515 -0
- data/resources/kernel-4.4/include/datacite-contributorType-v4.xsd +35 -0
- data/resources/kernel-4.4/include/datacite-dateType-v4.xsd +25 -0
- data/resources/kernel-4.4/include/datacite-descriptionType-v4.xsd +19 -0
- data/resources/kernel-4.4/include/datacite-funderIdentifierType-v4.xsd +16 -0
- data/resources/kernel-4.4/include/datacite-nameType-v4.xsd +10 -0
- data/resources/kernel-4.4/include/datacite-numberType-v4.xsd +12 -0
- data/resources/kernel-4.4/include/datacite-relatedIdentifierType-v4.xsd +34 -0
- data/resources/kernel-4.4/include/datacite-relationType-v4.xsd +51 -0
- data/resources/kernel-4.4/include/datacite-resourceType-v4.xsd +43 -0
- data/resources/kernel-4.4/include/datacite-titleType-v4.xsd +14 -0
- data/resources/kernel-4.4/include/xml.xsd +286 -0
- data/resources/kernel-4.4/metadata.xsd +707 -0
- data/resources/oecd/dfg-mappings.json +1866 -0
- data/resources/oecd/for-mappings.json +1099 -0
- data/resources/oecd/fos-mappings.json +198 -0
- data/resources/schema_org/jsonldcontext.json +7477 -0
- data/resources/spdx/licenses.json +5297 -0
- data/resources/xml.xsd +286 -0
- data/spec/array_spec.rb +22 -0
- data/spec/author_utils_spec.rb +193 -0
- data/spec/cli_spec.rb +226 -0
- data/spec/datacite_utils_spec.rb +178 -0
- data/spec/doi_utils_spec.rb +314 -0
- data/spec/find_from_format_spec.rb +114 -0
- data/spec/fixtures/aida.json +82 -0
- data/spec/fixtures/cgimp_package.json +18 -0
- data/spec/fixtures/cit_package.json +19 -0
- data/spec/fixtures/citeproc-no-author.json +26 -0
- data/spec/fixtures/citeproc-no-categories.json +21 -0
- data/spec/fixtures/citeproc.json +30 -0
- data/spec/fixtures/codemeta.json +86 -0
- data/spec/fixtures/codemeta_v2.json +86 -0
- data/spec/fixtures/crosscite.json +63 -0
- data/spec/fixtures/crossref.bib +14 -0
- data/spec/fixtures/crossref.ris +15 -0
- data/spec/fixtures/crossref.xml +606 -0
- data/spec/fixtures/datacite-empty-sizes.xml +57 -0
- data/spec/fixtures/datacite-example-affiliation.xml +114 -0
- data/spec/fixtures/datacite-example-ancientdates-v4.3.xml +29 -0
- data/spec/fixtures/datacite-example-complicated-tba.xml +56 -0
- data/spec/fixtures/datacite-example-complicated-v3.0.xml +48 -0
- data/spec/fixtures/datacite-example-complicated-v4.0.xml +54 -0
- data/spec/fixtures/datacite-example-complicated-v4.1.xml +57 -0
- data/spec/fixtures/datacite-example-dissertation-v4.4.xml +56 -0
- data/spec/fixtures/datacite-example-escaped-text.xml +56 -0
- data/spec/fixtures/datacite-example-full-v4.4.xml +114 -0
- data/spec/fixtures/datacite-example-geolocation-2.xml +141 -0
- data/spec/fixtures/datacite-example-geolocation.xml +66 -0
- data/spec/fixtures/datacite-example-polygon-v4.1.xml +163 -0
- data/spec/fixtures/datacite-example-relateditems.xml +61 -0
- data/spec/fixtures/datacite-example-xs-string.xml +28 -0
- data/spec/fixtures/datacite-formats-with-xs.xml +22 -0
- data/spec/fixtures/datacite-funderIdentifier.xml +78 -0
- data/spec/fixtures/datacite-geolocation-empty.xml +159 -0
- data/spec/fixtures/datacite-geolocationpolygons-multiple.xml +76 -0
- data/spec/fixtures/datacite-metadata-sample-complicated-v2.2.xml +52 -0
- data/spec/fixtures/datacite-multiple-language.xml +38 -0
- data/spec/fixtures/datacite-multiple-rights.xml +59 -0
- data/spec/fixtures/datacite-schema-2.2.xml +80 -0
- data/spec/fixtures/datacite-seriesinformation.xml +41 -0
- data/spec/fixtures/datacite-space-in-sizes.xml +52 -0
- data/spec/fixtures/datacite-xml-lang.xml +51 -0
- data/spec/fixtures/datacite.json +83 -0
- data/spec/fixtures/datacite.xml +40 -0
- data/spec/fixtures/datacite_dataset.xml +58 -0
- data/spec/fixtures/datacite_malformed_creator.xml +52 -0
- data/spec/fixtures/datacite_missing_creator.xml +33 -0
- data/spec/fixtures/datacite_schema_3.xml +58 -0
- data/spec/fixtures/datacite_software.json +21 -0
- data/spec/fixtures/datacite_software_missing_comma.json +18 -0
- data/spec/fixtures/datacite_software_overlapping_keys.json +18 -0
- data/spec/fixtures/datacite_software_version.json +74 -0
- data/spec/fixtures/edam_package.json +12 -0
- data/spec/fixtures/funding_reference.xml +53 -0
- data/spec/fixtures/gtex.xml +71 -0
- data/spec/fixtures/maremma/codemeta.json +36 -0
- data/spec/fixtures/nist.xml +35 -0
- data/spec/fixtures/ns0.xml +2 -0
- data/spec/fixtures/pure.bib +14 -0
- data/spec/fixtures/pure.ris +15 -0
- data/spec/fixtures/pure.xml +188 -0
- data/spec/fixtures/ris_bug.ris +9 -0
- data/spec/fixtures/schema_4.0.xml +140 -0
- data/spec/fixtures/schema_org.json +49 -0
- data/spec/fixtures/schema_org_front-matter.json +32 -0
- data/spec/fixtures/schema_org_geolocation.json +82 -0
- data/spec/fixtures/schema_org_geoshape.json +550 -0
- data/spec/fixtures/schema_org_gtex.json +75 -0
- data/spec/fixtures/schema_org_list.json +12623 -0
- data/spec/fixtures/schema_org_tdl_iodp_invalid_authors.json +25 -0
- data/spec/fixtures/schema_org_topmed.json +53 -0
- data/spec/fixtures/schema_org_type_as_array.json +41 -0
- data/spec/fixtures/vcr_cassettes/Briard_CLI/convert_from_id/crossref/default.yml +121 -0
- data/spec/fixtures/vcr_cassettes/Briard_CLI/convert_from_id/crossref/to_bibtex.yml +121 -0
- data/spec/fixtures/vcr_cassettes/Briard_CLI/convert_from_id/crossref/to_citation.yml +121 -0
- data/spec/fixtures/vcr_cassettes/Briard_CLI/convert_from_id/crossref/to_crossref.yml +121 -0
- data/spec/fixtures/vcr_cassettes/Briard_CLI/convert_from_id/crossref/to_datacite.yml +121 -0
- data/spec/fixtures/vcr_cassettes/Briard_CLI/convert_from_id/crossref/to_jats.yml +121 -0
- data/spec/fixtures/vcr_cassettes/Briard_CLI/convert_from_id/crossref/to_schema_org.yml +121 -0
- data/spec/fixtures/vcr_cassettes/Briard_CLI/convert_from_id/datacite/default.yml +110 -0
- data/spec/fixtures/vcr_cassettes/Briard_CLI/convert_from_id/datacite/to_bibtex.yml +110 -0
- data/spec/fixtures/vcr_cassettes/Briard_CLI/convert_from_id/datacite/to_citation.yml +110 -0
- data/spec/fixtures/vcr_cassettes/Briard_CLI/convert_from_id/datacite/to_datacite.yml +110 -0
- data/spec/fixtures/vcr_cassettes/Briard_CLI/convert_from_id/datacite/to_datacite_json.yml +110 -0
- data/spec/fixtures/vcr_cassettes/Briard_CLI/convert_from_id/datacite/to_jats.yml +110 -0
- data/spec/fixtures/vcr_cassettes/Briard_CLI/convert_from_id/datacite/to_schema_org.yml +110 -0
- data/spec/fixtures/vcr_cassettes/Briard_CLI/convert_from_id/schema_org/default.yml +117 -0
- data/spec/fixtures/vcr_cassettes/Briard_CLI/convert_from_id/schema_org/to_datacite.yml +117 -0
- data/spec/fixtures/vcr_cassettes/Briard_CLI/convert_from_id/schema_org/to_schema_org.yml +117 -0
- data/spec/fixtures/vcr_cassettes/Briard_CLI/find_from_format_by_id/crossref.yml +52 -0
- data/spec/fixtures/vcr_cassettes/Briard_CLI/find_from_format_by_id/datacite.yml +52 -0
- data/spec/fixtures/vcr_cassettes/Briard_CLI/find_from_format_by_id/jalc.yml +52 -0
- data/spec/fixtures/vcr_cassettes/Briard_CLI/find_from_format_by_id/kisti.yml +52 -0
- data/spec/fixtures/vcr_cassettes/Briard_CLI/find_from_format_by_id/medra.yml +52 -0
- data/spec/fixtures/vcr_cassettes/Briard_CLI/find_from_format_by_id/op.yml +52 -0
- data/spec/fixtures/vcr_cassettes/Briard_Metadata/authors_as_string/author.yml +65 -0
- data/spec/fixtures/vcr_cassettes/Briard_Metadata/authors_as_string/no_author.yml +65 -0
- data/spec/fixtures/vcr_cassettes/Briard_Metadata/authors_as_string/single_author.yml +65 -0
- data/spec/fixtures/vcr_cassettes/Briard_Metadata/authors_as_string/with_organization.yml +65 -0
- data/spec/fixtures/vcr_cassettes/Briard_Metadata/change_datacite_metadata/change_state.yml +110 -0
- data/spec/fixtures/vcr_cassettes/Briard_Metadata/change_datacite_metadata/change_title.yml +110 -0
- data/spec/fixtures/vcr_cassettes/Briard_Metadata/change_metadata_as_datacite_xml/change_description.yml +72 -0
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- data/spec/fixtures/vcr_cassettes/Briard_Metadata/write_metadata_as_turtle/BlogPosting_schema_org.yml +117 -0
- data/spec/fixtures/vcr_cassettes/Briard_Metadata/write_metadata_as_turtle/Dataset.yml +61 -0
- data/spec/fixtures/vcr_cassettes/Briard_Metadata/write_metadata_as_turtle/journal_article.yml +72 -0
- data/spec/fixtures/vcr_cassettes/Briard_Metadata/write_metadata_as_turtle/with_pages.yml +69 -0
- data/spec/fixtures/vivli.xml +1 -0
- data/spec/metadata_spec.rb +165 -0
- data/spec/readers/bibtex_reader_spec.rb +63 -0
- data/spec/readers/citeproc_reader_spec.rb +61 -0
- data/spec/readers/codemeta_reader_spec.rb +138 -0
- data/spec/readers/crosscite_reader_spec.rb +41 -0
- data/spec/readers/crossref_reader_spec.rb +1117 -0
- data/spec/readers/datacite_json_reader_spec.rb +80 -0
- data/spec/readers/datacite_reader_spec.rb +1655 -0
- data/spec/readers/npm_reader_spec.rb +66 -0
- data/spec/readers/ris_reader_spec.rb +75 -0
- data/spec/readers/schema_org_reader_spec.rb +376 -0
- data/spec/spec_helper.rb +94 -0
- data/spec/utils_spec.rb +617 -0
- data/spec/writers/bibtex_writer_spec.rb +195 -0
- data/spec/writers/citation_writer_spec.rb +52 -0
- data/spec/writers/citeproc_writer_spec.rb +296 -0
- data/spec/writers/codemeta_writer_spec.rb +45 -0
- data/spec/writers/crosscite_writer_spec.rb +122 -0
- data/spec/writers/crossref_writer_spec.rb +88 -0
- data/spec/writers/csv_writer_spec.rb +94 -0
- data/spec/writers/datacite_json_writer_spec.rb +90 -0
- data/spec/writers/datacite_writer_spec.rb +428 -0
- data/spec/writers/jats_writer_spec.rb +193 -0
- data/spec/writers/rdf_xml_writer_spec.rb +86 -0
- data/spec/writers/ris_writer_spec.rb +208 -0
- data/spec/writers/schema_org_writer_spec.rb +369 -0
- data/spec/writers/turtle_writer_spec.rb +84 -0
- metadata +1347 -0
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# frozen_string_literal: true
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require 'spec_helper'
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describe Briard::Metadata, vcr: true do
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context "write metadata as jats xml" do
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it "with data citation" do
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input = "10.7554/eLife.01567"
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subject = Briard::Metadata.new(input: input, from: "crossref")
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jats = Maremma.from_xml(subject.jats).fetch("element_citation", {})
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expect(jats.dig("publication_type")).to eq("journal")
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expect(jats.dig("article_title")).to eq("Automated quantitative histology reveals vascular morphodynamics during Arabidopsis hypocotyl secondary growth")
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expect(jats.dig("source")).to eq("eLife")
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expect(jats.dig("person_group", "name").length).to eq(5)
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expect(jats.dig("person_group", "name").first).to eq("surname"=>"Sankar", "given_names"=>"Martial")
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expect(jats.dig("year")).to eq("iso_8601_date"=>"2014-02-11", "__content__"=>"2014")
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expect(jats.dig("month")).to eq("02")
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expect(jats.dig("day")).to eq("11")
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end
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it "with ORCID ID" do
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input = "https://doi.org/10.1155/2012/291294"
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subject = Briard::Metadata.new(input: input, from: "crossref")
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jats = Maremma.from_xml(subject.jats).fetch("element_citation", {})
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expect(jats.dig("publication_type")).to eq("journal")
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expect(jats.dig("article_title")).to eq("Delineating a Retesting Zone Using Receiver Operating Characteristic Analysis on Serial QuantiFERON Tuberculosis Test Results in US Healthcare Workers")
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expect(jats.dig("source")).to eq("Pulmonary Medicine")
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expect(jats.dig("person_group", "name").length).to eq(7)
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expect(jats.dig("person_group", "name").first).to eq("surname"=>"Thanassi", "given_names"=>"Wendy")
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expect(jats.dig("year")).to eq("iso_8601_date"=>"2012", "__content__"=>"2012")
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end
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it "with editor" do
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input = "https://doi.org/10.1371/journal.pone.0000030"
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subject = Briard::Metadata.new(input: input, from: "crossref")
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jats = Maremma.from_xml(subject.jats).fetch("element_citation", {})
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expect(jats.dig("publication_type")).to eq("journal")
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expect(jats.dig("article_title")).to eq("Triose Phosphate Isomerase Deficiency Is Caused by Altered Dimerization???Not Catalytic Inactivity???of the Mutant Enzymes")
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expect(jats.dig("source")).to eq("PLoS ONE")
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expect(jats.dig("person_group", 0, "name").length).to eq(5)
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expect(jats.dig("person_group", 0, "name").first).to eq("surname"=>"Ralser", "given_names"=>"Markus")
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expect(jats.dig("person_group", 1, "name")).to eq("surname"=>"Janbon", "given_names"=>"Guilhem")
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expect(jats.dig("year")).to eq("iso_8601_date"=>"2006-12-20", "__content__"=>"2006")
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expect(jats.dig("month")).to eq("12")
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expect(jats.dig("day")).to eq("20")
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expect(jats.dig("fpage")).to eq("e30")
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expect(jats.dig("pub_id")).to eq("pub_id_type"=>"doi", "__content__"=>"10.1371/journal.pone.0000030")
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end
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it "book chapter" do
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input = "https://doi.org/10.5005/jp/books/12414_3"
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subject = Briard::Metadata.new(input: input, from: "crossref")
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jats = Maremma.from_xml(subject.jats).fetch("element_citation", {})
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expect(jats.dig("publication_type")).to eq("chapter")
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expect(jats.dig("chapter_title")).to eq("Physical Examinations")
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expect(jats.dig("source")).to eq("Jaypee Brothers Medical Publishing")
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expect(jats.dig("person_group", "name")).to eq("surname"=>"Saha", "given_names"=>"Ashis")
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expect(jats.dig("year")).to eq("iso_8601_date"=>"2015", "__content__"=>"2015")
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expect(jats.dig("fpage")).to eq("27")
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expect(jats.dig("lpage")).to eq("27")
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expect(jats.dig("pub_id")).to eq("pub_id_type"=>"doi", "__content__"=>"10.5005/jp/books/12414_3")
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end
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it "Crossref DOI" do
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input = fixture_path + "crossref.bib"
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subject = Briard::Metadata.new(input: input, from: "bibtex")
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jats = Maremma.from_xml(subject.jats).fetch("element_citation", {})
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expect(jats.dig("publication_type")).to eq("journal")
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expect(jats.dig("article_title")).to eq("Automated quantitative histology reveals vascular morphodynamics during Arabidopsis hypocotyl secondary growth")
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expect(jats.dig("source")).to eq("eLife")
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expect(jats.dig("person_group", "name").length).to eq(5)
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expect(jats.dig("person_group", "name").first).to eq("surname"=>"Sankar", "given_names"=>"Martial")
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expect(jats.dig("year")).to eq("iso_8601_date"=>"2014", "__content__"=>"2014")
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expect(jats.dig("month")).to be_nil
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expect(jats.dig("pub_id")).to eq("pub_id_type"=>"doi", "__content__"=>"10.7554/elife.01567")
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end
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it "BlogPosting Citeproc JSON" do
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input = fixture_path + "citeproc.json"
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subject = Briard::Metadata.new(input: input, from: "citeproc")
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jats = Maremma.from_xml(subject.jats).fetch("element_citation", {})
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expect(jats.dig("publication_type")).to be_nil
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expect(jats.dig("source")).to eq("Eating your own Dog Food")
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expect(jats.dig("publisher_name")).to eq("DataCite")
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expect(jats.dig("person_group", "name")).to eq("surname"=>"Fenner", "given_names"=>"Martin")
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expect(jats.dig("year")).to eq("iso_8601_date"=>"2016-12-20", "__content__"=>"2016")
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expect(jats.dig("month")).to eq("12")
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expect(jats.dig("day")).to eq("20")
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expect(jats.dig("pub_id")).to eq("pub_id_type"=>"doi", "__content__"=>"10.5438/4k3m-nyvg")
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end
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it "rdataone" do
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input = fixture_path + 'codemeta.json'
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subject = Briard::Metadata.new(input: input, from: "codemeta")
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jats = Maremma.from_xml(subject.jats).fetch("element_citation", {})
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expect(jats.dig("publication_type")).to eq("software")
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expect(jats.dig("source")).to eq("R Interface to the DataONE REST API")
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expect(jats.dig("publisher_name")).to eq("https://cran.r-project.org")
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expect(jats.dig("person_group", "name").length).to eq(3)
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expect(jats.dig("person_group", "name").first).to eq("surname"=>"Jones", "given_names"=>"Matt")
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expect(jats.dig("year")).to eq("iso_8601_date"=>"2016-05-27", "__content__"=>"2016")
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expect(jats.dig("month")).to eq("05")
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expect(jats.dig("day")).to eq("27")
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expect(jats.dig("version")).to eq("2.0.0")
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expect(jats.dig("pub_id")).to eq("pub_id_type"=>"doi", "__content__"=>"10.5063/f1m61h5x")
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end
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it "maremma" do
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input = "https://github.com/datacite/maremma"
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subject = Briard::Metadata.new(input: input, from: "codemeta")
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jats = Maremma.from_xml(subject.jats).fetch("element_citation", {})
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expect(jats.dig("publication_type")).to eq("software")
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expect(jats.dig("source")).to eq("Maremma: a Ruby library for simplified network calls")
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expect(jats.dig("publisher_name")).to eq("DataCite")
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expect(jats.dig("person_group", "name")).to eq("surname"=>"Fenner", "given_names"=>"Martin")
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expect(jats.dig("year")).to eq("iso_8601_date"=>"2017-02-24", "__content__"=>"2017")
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expect(jats.dig("month")).to eq("02")
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expect(jats.dig("day")).to eq("24")
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expect(jats.dig("pub_id")).to eq("pub_id_type"=>"doi", "__content__"=>"10.5438/qeg0-3gm3")
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end
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it "Text pass-thru" do
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input = "https://doi.org/10.23640/07243.5153971"
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subject = Briard::Metadata.new(input: input, from: "datacite")
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jats = Maremma.from_xml(subject.jats).fetch("element_citation", {})
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expect(jats.dig("publication_type")).to eq("journal")
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expect(jats.dig("article_title")).to eq("Recommendation of: ORCID Works Metadata Working Group")
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expect(jats.dig("source")).to eq("Figshare")
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expect(jats.dig("person_group", "name").length).to eq(20)
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expect(jats.dig("person_group", "name").first).to eq("surname"=>"Paglione", "given_names"=>"Laura")
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expect(jats.dig("year")).to eq("iso_8601_date"=>"2017", "__content__"=>"2017")
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expect(jats.dig("pub_id")).to eq("pub_id_type"=>"doi", "__content__"=>"10.23640/07243.5153971")
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end
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it "Dataset in schema 4.0" do
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input = "https://doi.org/10.5061/DRYAD.8515"
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subject = Briard::Metadata.new(input: input, from: "datacite", regenerate: true)
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jats = Maremma.from_xml(subject.jats).fetch("element_citation", {})
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expect(jats.dig("publication_type")).to eq("data")
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expect(jats.dig("data_title")).to eq("Data from: A new malaria agent in African hominids.")
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expect(jats.dig("source")).to eq("Dryad")
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expect(jats.dig("person_group", "name").length).to eq(8)
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expect(jats.dig("person_group", "name").first).to eq("surname"=>"Ollomo", "given_names"=>"Benjamin")
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expect(jats.dig("year")).to eq("iso_8601_date"=>"2011", "__content__"=>"2011")
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expect(jats.dig("pub_id")).to eq("pub_id_type"=>"doi", "__content__"=>"10.5061/dryad.8515")
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end
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it "with data citation schema.org" do
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input = "https://blog.datacite.org/eating-your-own-dog-food/"
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subject = Briard::Metadata.new(input: input, from: "schema_org")
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jats = Maremma.from_xml(subject.jats).fetch("element_citation", {})
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expect(jats.dig("publication_type")).to be_nil
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expect(jats.dig("source")).to eq("Eating your own Dog Food")
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expect(jats.dig("publisher_name")).to eq("DataCite")
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expect(jats.dig("person_group", "name")).to eq("surname"=>"Fenner", "given_names"=>"Martin")
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expect(jats.dig("year")).to eq("iso_8601_date"=>"2016-12-20", "__content__"=>"2016")
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expect(jats.dig("month")).to eq("12")
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expect(jats.dig("day")).to eq("20")
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expect(jats.dig("pub_id")).to eq("pub_id_type"=>"doi", "__content__"=>"10.5438/4k3m-nyvg")
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end
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it "interactive resource without dates" do
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input = "https://doi.org/10.34747/g6yb-3412"
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subject = Briard::Metadata.new(input: input, from: "datacite")
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jats = Maremma.from_xml(subject.jats).fetch("element_citation", {})
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expect(jats.dig("publication_type")).to be_nil
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expect(jats.dig("source")).to eq("Exploring the \"Many analysts, one dataset\" project from COS")
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expect(jats.dig("publisher_name")).to eq("Gigantum, Inc.")
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expect(jats.dig("person_group", "name")).to eq("given_names"=>"Dav", "surname"=>"Clark")
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expect(jats.dig("year")).to eq("__content__"=>"2019", "iso_8601_date"=>"2019")
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expect(jats.dig("month")).to be_nil
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expect(jats.dig("day")).to be_nil
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expect(jats.dig("pub_id")).to eq("pub_id_type"=>"doi", "__content__"=>"10.34747/g6yb-3412")
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end
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end
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context "change metadata as datacite xml" do
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it "with data citation" do
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input = "10.7554/eLife.01567"
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subject = Briard::Metadata.new(input: input, from: "crossref")
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jats = Maremma.from_xml(subject.jats).fetch("element_citation", {})
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expect(jats.dig("publication_type")).to eq("journal")
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expect(jats.dig("article_title")).to eq("Automated quantitative histology reveals vascular morphodynamics during Arabidopsis hypocotyl secondary growth")
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expect(jats.dig("source")).to eq("eLife")
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expect(jats.dig("person_group", "name").length).to eq(5)
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expect(jats.dig("person_group", "name").first).to eq("surname"=>"Sankar", "given_names"=>"Martial")
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expect(jats.dig("year")).to eq("iso_8601_date"=>"2014-02-11", "__content__"=>"2014")
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expect(jats.dig("month")).to eq("02")
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expect(jats.dig("day")).to eq("11")
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expect(jats.dig("pub_id")).to eq("pub_id_type"=>"doi", "__content__"=>"10.7554/elife.01567")
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end
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end
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end
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@@ -0,0 +1,86 @@
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# frozen_string_literal: true
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2
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3
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require 'spec_helper'
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4
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5
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describe Briard::Metadata, vcr: true do
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6
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context "write metadata as rdf xml" do
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it "journal article" do
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input = "10.7554/eLife.01567"
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9
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subject = Briard::Metadata.new(input: input, from: "crossref")
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10
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expect(subject.valid?).to be true
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rdf_xml = Maremma.from_xml(subject.rdf_xml).fetch("RDF", {})
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expect(rdf_xml.dig("ScholarlyArticle", "rdf:about")).to eq("https://doi.org/10.7554/elife.01567")
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expect(rdf_xml.dig("ScholarlyArticle", "name")).to eq("Automated quantitative histology reveals vascular morphodynamics during Arabidopsis hypocotyl secondary growth")
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expect(rdf_xml.dig("ScholarlyArticle", "datePublished", "__content__")).to eq("2014-02-11")
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end
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17
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it "with pages" do
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18
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input = "https://doi.org/10.1155/2012/291294"
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19
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subject = Briard::Metadata.new(input: input, from: "crossref")
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20
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expect(subject.valid?).to be true
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21
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rdf_xml = Maremma.from_xml(subject.rdf_xml).fetch("RDF", {})
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expect(rdf_xml.dig("ScholarlyArticle", "rdf:about")).to eq("https://doi.org/10.1155/2012/291294")
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expect(rdf_xml.dig("ScholarlyArticle", "name")).to eq("Delineating a Retesting Zone Using Receiver Operating Characteristic Analysis on Serial QuantiFERON Tuberculosis Test Results in US Healthcare Workers")
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expect(rdf_xml.dig("ScholarlyArticle", "datePublished", "__content__")).to eq("2012")
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expect(rdf_xml.dig("ScholarlyArticle", "pageStart")).to eq("1")
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expect(rdf_xml.dig("ScholarlyArticle", "pageEnd")).to eq("7")
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27
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end
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28
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29
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it "Crossref DOI" do
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30
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input = fixture_path + "crossref.bib"
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subject = Briard::Metadata.new(input: input, from: "bibtex")
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32
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+
expect(subject.valid?).to be true
|
33
|
+
rdf_xml = Maremma.from_xml(subject.rdf_xml).fetch("RDF", {})
|
34
|
+
|
35
|
+
expect(rdf_xml.dig("ScholarlyArticle", "rdf:about")).to eq("https://doi.org/10.7554/elife.01567")
|
36
|
+
expect(rdf_xml.dig("ScholarlyArticle", "name")).to eq("Automated quantitative histology reveals vascular morphodynamics during Arabidopsis hypocotyl secondary growth")
|
37
|
+
expect(rdf_xml.dig("ScholarlyArticle", "datePublished", "__content__")).to eq("2014")
|
38
|
+
expect(rdf_xml.dig("ScholarlyArticle", "periodical", "Journal", "name")).to eq("eLife")
|
39
|
+
end
|
40
|
+
|
41
|
+
it "BlogPosting" do
|
42
|
+
input = "https://doi.org/10.5438/4K3M-NYVG"
|
43
|
+
subject = Briard::Metadata.new(input: input, from: "datacite")
|
44
|
+
expect(subject.valid?).to be true
|
45
|
+
rdf_xml = Maremma.from_xml(subject.rdf_xml).fetch("RDF", {})
|
46
|
+
expect(rdf_xml.dig("ScholarlyArticle", "rdf:about")).to eq("https://doi.org/10.5438/4k3m-nyvg")
|
47
|
+
expect(rdf_xml.dig("ScholarlyArticle", "name")).to eq("Eating your own Dog Food")
|
48
|
+
expect(rdf_xml.dig("ScholarlyArticle", "keywords")).to eq("datacite, doi, metadata, FOS: Computer and information sciences, FOS: Computer and information sciences")
|
49
|
+
expect(rdf_xml.dig("ScholarlyArticle", "datePublished", "__content__")).to eq("2016-12-20")
|
50
|
+
end
|
51
|
+
|
52
|
+
it "BlogPosting Citeproc JSON" do
|
53
|
+
input = fixture_path + "citeproc.json"
|
54
|
+
subject = Briard::Metadata.new(input: input, from: "citeproc")
|
55
|
+
rdf_xml = Maremma.from_xml(subject.rdf_xml).fetch("RDF", {})
|
56
|
+
expect(rdf_xml.dig("BlogPosting", "rdf:about")).to eq("https://doi.org/10.5438/4k3m-nyvg")
|
57
|
+
expect(rdf_xml.dig("BlogPosting", "name")).to eq("Eating your own Dog Food")
|
58
|
+
expect(rdf_xml.dig("BlogPosting", "datePublished", "__content__")).to eq("2016-12-20")
|
59
|
+
end
|
60
|
+
|
61
|
+
it "maremma" do
|
62
|
+
input = "https://github.com/datacite/maremma"
|
63
|
+
subject = Briard::Metadata.new(input: input, from: "codemeta")
|
64
|
+
rdf_xml = Maremma.from_xml(subject.rdf_xml).fetch("RDF", {})
|
65
|
+
expect(rdf_xml.dig("SoftwareSourceCode", "rdf:about")).to eq("https://doi.org/10.5438/qeg0-3gm3")
|
66
|
+
expect(rdf_xml.dig("SoftwareSourceCode", "author", "Person", "rdf:about")).to eq("https://orcid.org/0000-0003-0077-4738")
|
67
|
+
expect(rdf_xml.dig("SoftwareSourceCode", "author", "Person", "name")).to eq("Martin Fenner")
|
68
|
+
expect(rdf_xml.dig("SoftwareSourceCode", "name")).to eq("Maremma: a Ruby library for simplified network calls")
|
69
|
+
expect(rdf_xml.dig("SoftwareSourceCode", "keywords")).to eq("faraday, excon, net/http")
|
70
|
+
expect(rdf_xml.dig("SoftwareSourceCode", "datePublished", "__content__")).to eq("2017-02-24")
|
71
|
+
end
|
72
|
+
|
73
|
+
it "BlogPosting schema.org" do
|
74
|
+
input = "https://blog.datacite.org/eating-your-own-dog-food/"
|
75
|
+
subject = Briard::Metadata.new(input: input, from: "schema_org")
|
76
|
+
expect(subject.valid?).to be true
|
77
|
+
rdf_xml = Maremma.from_xml(subject.rdf_xml).fetch("RDF", {})
|
78
|
+
expect(rdf_xml.dig("BlogPosting", "rdf:about")).to eq("https://doi.org/10.5438/4k3m-nyvg")
|
79
|
+
expect(rdf_xml.dig("BlogPosting", "author", "Person", "rdf:about")).to eq("https://orcid.org/0000-0003-1419-2405")
|
80
|
+
expect(rdf_xml.dig("BlogPosting", "author", "Person", "name")).to eq("Martin Fenner")
|
81
|
+
expect(rdf_xml.dig("BlogPosting", "name")).to eq("Eating your own Dog Food")
|
82
|
+
expect(rdf_xml.dig("BlogPosting", "keywords")).to eq("datacite, doi, metadata, featured")
|
83
|
+
expect(rdf_xml.dig("BlogPosting", "datePublished", "__content__")).to eq("2016-12-20")
|
84
|
+
end
|
85
|
+
end
|
86
|
+
end
|
@@ -0,0 +1,208 @@
|
|
1
|
+
# frozen_string_literal: true
|
2
|
+
|
3
|
+
require 'spec_helper'
|
4
|
+
|
5
|
+
describe Briard::Metadata, vcr: true do
|
6
|
+
context "write metadata as ris" do
|
7
|
+
it "journal article" do
|
8
|
+
input = "10.7554/eLife.01567"
|
9
|
+
subject = Briard::Metadata.new(input: input, from: "crossref")
|
10
|
+
expect(subject.valid?).to be true
|
11
|
+
ris = subject.ris.split("\r\n")
|
12
|
+
expect(ris[0]).to eq("TY - JOUR")
|
13
|
+
expect(ris[1]).to eq("T1 - Automated quantitative histology reveals vascular morphodynamics during Arabidopsis hypocotyl secondary growth")
|
14
|
+
expect(ris[2]).to eq("T2 - eLife")
|
15
|
+
expect(ris[3]).to eq("AU - Sankar, Martial")
|
16
|
+
expect(ris[8]).to eq("DO - 10.7554/elife.01567")
|
17
|
+
expect(ris[9]).to eq("UR - https://elifesciences.org/articles/01567")
|
18
|
+
expect(ris[10]).to start_with("AB - Among various advantages")
|
19
|
+
expect(ris[11]).to eq("PY - 2014")
|
20
|
+
expect(ris[12]).to eq("PB - eLife Sciences Publications, Ltd")
|
21
|
+
expect(ris[13]).to eq("VL - 3")
|
22
|
+
expect(ris[14]).to eq("SP - e01567")
|
23
|
+
expect(ris[15]).to eq("SN - 2050-084X")
|
24
|
+
expect(ris[16]).to eq("ER - ")
|
25
|
+
end
|
26
|
+
|
27
|
+
it "with pages" do
|
28
|
+
input = "https://doi.org/10.1155/2012/291294"
|
29
|
+
subject = Briard::Metadata.new(input: input, from: "crossref")
|
30
|
+
# expect(subject.valid?).to be true
|
31
|
+
ris = subject.ris.split("\r\n")
|
32
|
+
expect(ris[0]).to eq("TY - JOUR")
|
33
|
+
expect(ris[1]).to eq("T1 - Delineating a Retesting Zone Using Receiver Operating Characteristic Analysis on Serial QuantiFERON Tuberculosis Test Results in US Healthcare Workers")
|
34
|
+
expect(ris[2]).to eq("T2 - Pulmonary Medicine")
|
35
|
+
expect(ris[3]).to eq("AU - Thanassi, Wendy")
|
36
|
+
expect(ris[10]).to eq("DO - 10.1155/2012/291294")
|
37
|
+
expect(ris[11]).to eq("UR - http://www.hindawi.com/journals/pm/2012/291294/")
|
38
|
+
expect(ris[12]).to start_with("AB - . To find a statistically significant separation point for the QuantiFERON")
|
39
|
+
expect(ris[13]).to eq("PY - 2012")
|
40
|
+
expect(ris[14]).to eq("PB - Hindawi Limited")
|
41
|
+
expect(ris[15]).to eq("VL - 2012")
|
42
|
+
expect(ris[16]).to eq("SP - 1")
|
43
|
+
expect(ris[17]).to eq("EP - 7")
|
44
|
+
expect(ris[18]).to eq("SN - 2090-1844")
|
45
|
+
expect(ris[19]).to eq("ER - ")
|
46
|
+
end
|
47
|
+
|
48
|
+
it "alternate name" do
|
49
|
+
input = "https://doi.org/10.3205/ZMA001102"
|
50
|
+
subject = Briard::Metadata.new(input: input, from: "datacite")
|
51
|
+
expect(subject.valid?).to be true
|
52
|
+
ris = subject.ris.split("\r\n")
|
53
|
+
expect(ris[0]).to eq("TY - RPRT")
|
54
|
+
expect(ris[1]).to eq("T1 - Visions and reality: the idea of competence-oriented assessment for German medical students is not yet realised in licensing examinations")
|
55
|
+
expect(ris[2]).to eq("T2 - GMS Journal for Medical Education; 34(2):Doc25")
|
56
|
+
expect(ris[3]).to eq("AU - Huber-Lang, Markus")
|
57
|
+
expect(ris[9]).to eq("DO - 10.3205/zma001102")
|
58
|
+
expect(ris[10]).to eq("UR - http://www.egms.de/en/journals/zma/2017-34/zma001102.shtml")
|
59
|
+
expect(ris[11]).to start_with("AB - Objective: Competence orientation")
|
60
|
+
expect(ris[12]).to eq("KW - medical competence")
|
61
|
+
expect(ris[22]).to eq("PY - 2017")
|
62
|
+
expect(ris[23]).to eq("PB - German Medical Science GMS Publishing House")
|
63
|
+
expect(ris[24]).to eq("LA - en")
|
64
|
+
expect(ris[25]).to eq("SN - 2366-5017")
|
65
|
+
expect(ris[26]).to eq("ER - ")
|
66
|
+
end
|
67
|
+
|
68
|
+
it "Crossref DOI" do
|
69
|
+
input = fixture_path + "crossref.bib"
|
70
|
+
subject = Briard::Metadata.new(input: input, from: "bibtex")
|
71
|
+
|
72
|
+
ris = subject.ris.split("\r\n")
|
73
|
+
expect(ris[0]).to eq("TY - JOUR")
|
74
|
+
expect(ris[1]).to eq("T1 - Automated quantitative histology reveals vascular morphodynamics during Arabidopsis hypocotyl secondary growth")
|
75
|
+
expect(ris[2]).to eq("T2 - eLife")
|
76
|
+
expect(ris[3]).to eq("AU - Sankar, Martial")
|
77
|
+
expect(ris[8]).to eq("DO - 10.7554/elife.01567")
|
78
|
+
expect(ris[9]).to eq("UR - http://elifesciences.org/lookup/doi/10.7554/eLife.01567")
|
79
|
+
expect(ris[10]).to eq("AB - Among various advantages, their small size makes model organisms preferred subjects of investigation. Yet, even in model systems detailed analysis of numerous developmental processes at cellular level is severely hampered by their scale.")
|
80
|
+
expect(ris[11]).to eq("PY - 2014")
|
81
|
+
expect(ris[12]).to eq("PB - {eLife} Sciences Organisation, Ltd.")
|
82
|
+
expect(ris[13]).to eq("VL - 3")
|
83
|
+
expect(ris[14]).to eq("SN - 2050-084X")
|
84
|
+
expect(ris[15]).to eq("ER - ")
|
85
|
+
end
|
86
|
+
|
87
|
+
it "BlogPosting" do
|
88
|
+
input = "https://doi.org/10.5438/4K3M-NYVG"
|
89
|
+
subject = Briard::Metadata.new(input: input, from: "datacite")
|
90
|
+
expect(subject.valid?).to be true
|
91
|
+
ris = subject.ris.split("\r\n")
|
92
|
+
expect(ris[0]).to eq("TY - RPRT")
|
93
|
+
expect(ris[1]).to eq("T1 - Eating your own Dog Food")
|
94
|
+
expect(ris[2]).to eq("AU - Fenner, Martin")
|
95
|
+
expect(ris[3]).to eq("DO - 10.5438/4k3m-nyvg")
|
96
|
+
expect(ris[4]).to eq("UR - https://blog.datacite.org/eating-your-own-dog-food/")
|
97
|
+
expect(ris[5]).to eq("AB - Eating your own dog food is a slang term to describe that an organization should itself use the products and services it provides. For DataCite this means that we should use DOIs with appropriate metadata and strategies for long-term preservation for...")
|
98
|
+
expect(ris[6]).to eq("KW - datacite")
|
99
|
+
expect(ris[9]).to eq("KW - FOS: Computer and information sciences")
|
100
|
+
expect(ris[10]).to eq("KW - FOS: Computer and information sciences")
|
101
|
+
expect(ris[11]).to eq("PY - 2016")
|
102
|
+
expect(ris[12]).to eq("PB - DataCite")
|
103
|
+
expect(ris[13]).to eq("LA - en")
|
104
|
+
expect(ris[14]).to eq("SN - 10.5438/0000-00ss")
|
105
|
+
expect(ris[15]).to eq("ER - ")
|
106
|
+
end
|
107
|
+
|
108
|
+
it "BlogPosting Citeproc JSON" do
|
109
|
+
input = fixture_path + "citeproc.json"
|
110
|
+
subject = Briard::Metadata.new(input: input, from: "citeproc")
|
111
|
+
ris = subject.ris.split("\r\n")
|
112
|
+
expect(ris[0]).to eq("TY - GEN")
|
113
|
+
expect(ris[1]).to eq("T1 - Eating your own Dog Food")
|
114
|
+
expect(ris[2]).to eq("T2 - DataCite Blog")
|
115
|
+
expect(ris[3]).to eq("AU - Fenner, Martin")
|
116
|
+
expect(ris[4]).to eq("DO - 10.5438/4k3m-nyvg")
|
117
|
+
expect(ris[5]).to eq("UR - https://blog.datacite.org/eating-your-own-dog-food")
|
118
|
+
expect(ris[6]).to eq("AB - Eating your own dog food is a slang term to describe that an organization should itself use the products and services it provides. For DataCite this means that we should use DOIs with appropriate metadata and strategies for long-term preservation for...")
|
119
|
+
expect(ris[7]).to eq("KW - Phylogeny")
|
120
|
+
expect(ris[14]).to eq("PY - 2016")
|
121
|
+
expect(ris[15]).to eq("PB - DataCite")
|
122
|
+
expect(ris[16]).to eq("ER - ")
|
123
|
+
end
|
124
|
+
|
125
|
+
it "BlogPosting DataCite JSON" do
|
126
|
+
input = fixture_path + "datacite.json"
|
127
|
+
subject = Briard::Metadata.new(input: input, from: "datacite_json")
|
128
|
+
ris = subject.ris.split("\r\n")
|
129
|
+
expect(ris[0]).to eq("TY - RPRT")
|
130
|
+
expect(ris[1]).to eq("T1 - Eating your own Dog Food")
|
131
|
+
expect(ris[2]).to eq("AU - Fenner, Martin")
|
132
|
+
expect(ris[3]).to eq("DO - 10.5438/4k3m-nyvg")
|
133
|
+
expect(ris[4]).to eq("AB - Eating your own dog food is a slang term to describe that an organization should itself use the products and services it provides. For DataCite this means that we should use DOIs with appropriate metadata and strategies for long-term preservation for...")
|
134
|
+
expect(ris[5]).to eq("KW - datacite")
|
135
|
+
expect(ris[8]).to eq("PY - 2016")
|
136
|
+
expect(ris[9]).to eq("PB - DataCite")
|
137
|
+
expect(ris[10]).to eq("SN - 10.5438/0000-00ss")
|
138
|
+
expect(ris[11]).to eq("ER - ")
|
139
|
+
end
|
140
|
+
|
141
|
+
it "BlogPosting schema.org" do
|
142
|
+
input = "https://blog.datacite.org/eating-your-own-dog-food/"
|
143
|
+
subject = Briard::Metadata.new(input: input, from: "schema_org")
|
144
|
+
ris = subject.ris.split("\r\n")
|
145
|
+
expect(ris[0]).to eq("TY - GEN")
|
146
|
+
expect(ris[1]).to eq("T1 - Eating your own Dog Food")
|
147
|
+
expect(ris[2]).to eq("T2 - DataCite Blog")
|
148
|
+
expect(ris[3]).to eq("AU - Fenner, Martin")
|
149
|
+
expect(ris[4]).to eq("DO - 10.5438/4k3m-nyvg")
|
150
|
+
expect(ris[5]).to eq("UR - https://blog.datacite.org/eating-your-own-dog-food")
|
151
|
+
expect(ris[6]).to eq("AB - Eating your own dog food is a slang term to describe that an organization should itself use the products and services it provides. For DataCite this means that we should use DOIs with appropriate metadata and strategies for long-term preservation for...")
|
152
|
+
expect(ris[7]).to eq("KW - datacite")
|
153
|
+
expect(ris[11]).to eq("PY - 2016")
|
154
|
+
expect(ris[12]).to eq("PB - DataCite")
|
155
|
+
expect(ris[13]).to eq("SN - 10.5438/0000-00ss")
|
156
|
+
expect(ris[14]).to eq("ER - ")
|
157
|
+
end
|
158
|
+
|
159
|
+
it "Dataset" do
|
160
|
+
input = "10.5061/DRYAD.8515"
|
161
|
+
subject = Briard::Metadata.new(input: input, from: "datacite")
|
162
|
+
expect(subject.valid?).to be true
|
163
|
+
ris = subject.ris.split("\r\n")
|
164
|
+
expect(ris[0]).to eq("TY - DATA")
|
165
|
+
expect(ris[1]).to eq("T1 - Data from: A new malaria agent in African hominids.")
|
166
|
+
expect(ris[2]).to eq("AU - Ollomo, Benjamin")
|
167
|
+
expect(ris[10]).to eq("DO - 10.5061/dryad.8515")
|
168
|
+
expect(ris[11]).to eq("UR - http://datadryad.org/stash/dataset/doi:10.5061/dryad.8515")
|
169
|
+
expect(ris[13]).to eq("KW - Plasmodium")
|
170
|
+
expect(ris[18]).to eq("PB - Dryad")
|
171
|
+
expect(ris[19]).to eq("LA - en")
|
172
|
+
expect(ris[20]).to eq("ER - ")
|
173
|
+
end
|
174
|
+
|
175
|
+
it "maremma" do
|
176
|
+
input = "https://github.com/datacite/maremma"
|
177
|
+
subject = Briard::Metadata.new(input: input, from: "codemeta")
|
178
|
+
ris = subject.ris.split("\r\n")
|
179
|
+
expect(ris[0]).to eq("TY - COMP")
|
180
|
+
expect(ris[1]).to eq("T1 - Maremma: a Ruby library for simplified network calls")
|
181
|
+
expect(ris[2]).to eq("AU - Fenner, Martin")
|
182
|
+
expect(ris[3]).to eq("DO - 10.5438/qeg0-3gm3")
|
183
|
+
expect(ris[4]).to eq("UR - https://github.com/datacite/maremma")
|
184
|
+
expect(ris[5]).to eq("AB - Ruby utility library for network requests. Based on Faraday and Excon, provides a wrapper for XML/JSON parsing and error handling. All successful responses are returned as hash with key data, all errors in a JSONAPI-friendly hash with key errors.")
|
185
|
+
expect(ris[6]).to eq("KW - faraday")
|
186
|
+
expect(ris[9]).to eq("PY - 2017")
|
187
|
+
expect(ris[10]).to eq("PB - DataCite")
|
188
|
+
expect(ris[11]).to eq("ER - ")
|
189
|
+
end
|
190
|
+
|
191
|
+
it "keywords with subject scheme" do
|
192
|
+
input = "https://doi.org/10.1594/pangaea.721193"
|
193
|
+
subject = Briard::Metadata.new(input: input, from: "datacite")
|
194
|
+
ris = subject.ris.split("\r\n")
|
195
|
+
expect(ris.first).to eq("TY - DATA")
|
196
|
+
expect(ris).to include("T1 - Seawater carbonate chemistry and processes during experiments with Crassostrea gigas, 2007, supplement to: Kurihara, Haruko; Kato, Shoji; Ishimatsu, Atsushi (2007): Effects of increased seawater pCO2 on early development of the oyster Crassostrea gigas. Aquatic Biology, 1(1), 91-98")
|
197
|
+
expect(ris).to include("AU - Kurihara, Haruko")
|
198
|
+
expect(ris).to include("DO - 10.1594/pangaea.721193")
|
199
|
+
expect(ris).to include("UR - https://doi.pangaea.de/10.1594/PANGAEA.721193")
|
200
|
+
expect(ris).to include("KW - Animalia")
|
201
|
+
expect(ris).to include("KW - Bottles or small containers/Aquaria (<20 L)")
|
202
|
+
expect(ris).to include("PY - 2007")
|
203
|
+
expect(ris).to include("PB - PANGAEA - Data Publisher for Earth & Environmental Science")
|
204
|
+
expect(ris).to include("LA - en")
|
205
|
+
expect(ris.last).to eq("ER - ")
|
206
|
+
end
|
207
|
+
end
|
208
|
+
end
|