briard 2.0

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Files changed (730) hide show
  1. checksums.yaml +7 -0
  2. data/.github/workflows/build.yml +37 -0
  3. data/.github/workflows/changelog.yml +37 -0
  4. data/.github/workflows/release.yml +47 -0
  5. data/.gitignore +59 -0
  6. data/.rubocop.yml +658 -0
  7. data/CHANGELOG.md +1 -0
  8. data/CITATION +16 -0
  9. data/Gemfile +3 -0
  10. data/Gemfile.lock +226 -0
  11. data/LICENSE.md +21 -0
  12. data/README.md +1030 -0
  13. data/Rakefile +13 -0
  14. data/bin/briard +9 -0
  15. data/bolognese.gemspec +59 -0
  16. data/lib/briard/.env.example +3 -0
  17. data/lib/briard/array.rb +13 -0
  18. data/lib/briard/author_utils.rb +166 -0
  19. data/lib/briard/cli.rb +58 -0
  20. data/lib/briard/crossref_utils.rb +336 -0
  21. data/lib/briard/datacite_utils.rb +395 -0
  22. data/lib/briard/doi_utils.rb +65 -0
  23. data/lib/briard/metadata.rb +285 -0
  24. data/lib/briard/metadata_utils.rb +215 -0
  25. data/lib/briard/pubmed.rb +36 -0
  26. data/lib/briard/readers/bibtex_reader.rb +100 -0
  27. data/lib/briard/readers/citeproc_reader.rb +119 -0
  28. data/lib/briard/readers/codemeta_reader.rb +108 -0
  29. data/lib/briard/readers/crosscite_reader.rb +14 -0
  30. data/lib/briard/readers/crossref_reader.rb +368 -0
  31. data/lib/briard/readers/datacite_json_reader.rb +14 -0
  32. data/lib/briard/readers/datacite_reader.rb +341 -0
  33. data/lib/briard/readers/npm_reader.rb +115 -0
  34. data/lib/briard/readers/ris_reader.rb +114 -0
  35. data/lib/briard/readers/schema_org_reader.rb +263 -0
  36. data/lib/briard/string.rb +7 -0
  37. data/lib/briard/utils.rb +1369 -0
  38. data/lib/briard/version.rb +3 -0
  39. data/lib/briard/whitelist_scrubber.rb +47 -0
  40. data/lib/briard/writers/bibtex_writer.rb +32 -0
  41. data/lib/briard/writers/citation_writer.rb +14 -0
  42. data/lib/briard/writers/citeproc_writer.rb +11 -0
  43. data/lib/briard/writers/codemeta_writer.rb +29 -0
  44. data/lib/briard/writers/crosscite_writer.rb +11 -0
  45. data/lib/briard/writers/crossref_writer.rb +11 -0
  46. data/lib/briard/writers/csv_writer.rb +26 -0
  47. data/lib/briard/writers/datacite_json_writer.rb +11 -0
  48. data/lib/briard/writers/datacite_writer.rb +12 -0
  49. data/lib/briard/writers/jats_writer.rb +134 -0
  50. data/lib/briard/writers/rdf_xml_writer.rb +11 -0
  51. data/lib/briard/writers/ris_writer.rb +29 -0
  52. data/lib/briard/writers/schema_org_writer.rb +51 -0
  53. data/lib/briard/writers/turtle_writer.rb +11 -0
  54. data/lib/briard.rb +31 -0
  55. data/resources/2008/09/xsd.xsl +997 -0
  56. data/resources/crossref/AccessIndicators.xsd +47 -0
  57. data/resources/crossref/JATS-journalpublishing1-3d2-mathml3-elements.xsd +10130 -0
  58. data/resources/crossref/JATS-journalpublishing1-3d2-mathml3.xsd +48 -0
  59. data/resources/crossref/JATS-journalpublishing1-elements.xsd +8705 -0
  60. data/resources/crossref/JATS-journalpublishing1-mathml3-elements.xsd +8608 -0
  61. data/resources/crossref/JATS-journalpublishing1-mathml3.xsd +49 -0
  62. data/resources/crossref/JATS-journalpublishing1.xsd +6176 -0
  63. data/resources/crossref/clinicaltrials.xsd +61 -0
  64. data/resources/crossref/common5.3.1.xsd +1530 -0
  65. data/resources/crossref/crossref5.3.1.xsd +1949 -0
  66. data/resources/crossref/crossref_query_output3.0.xsd +1097 -0
  67. data/resources/crossref/fundref.xsd +49 -0
  68. data/resources/crossref/module-ali.xsd +39 -0
  69. data/resources/crossref/relations.xsd +444 -0
  70. data/resources/datacite-contributorType-v4.xsd +35 -0
  71. data/resources/datacite-dateType-v4.xsd +25 -0
  72. data/resources/datacite-descriptionType-v4.xsd +19 -0
  73. data/resources/datacite-funderIdentifierType-v4.xsd +15 -0
  74. data/resources/datacite-nameType-v4.xsd +10 -0
  75. data/resources/datacite-relatedIdentifierType-v4.xsd +34 -0
  76. data/resources/datacite-relationType-v4.xsd +49 -0
  77. data/resources/datacite-resourceType-v4.xsd +28 -0
  78. data/resources/datacite-titleType-v4.xsd +14 -0
  79. data/resources/kernel-2.1/include/datacite-contributorType-v1.1.xsd +22 -0
  80. data/resources/kernel-2.1/include/datacite-contributorType-v2.xsd +3 -0
  81. data/resources/kernel-2.1/include/datacite-dateType-v1.1.xsd +31 -0
  82. data/resources/kernel-2.1/include/datacite-dateType-v2.xsd +3 -0
  83. data/resources/kernel-2.1/include/datacite-descriptionType-v1.1.xsd +14 -0
  84. data/resources/kernel-2.1/include/datacite-descriptionType-v2.xsd +3 -0
  85. data/resources/kernel-2.1/include/datacite-relatedIdentifierType-v1.1.xsd +24 -0
  86. data/resources/kernel-2.1/include/datacite-relatedIdentifierType-v2.xsd +3 -0
  87. data/resources/kernel-2.1/include/datacite-relationType-v1.1.xsd +29 -0
  88. data/resources/kernel-2.1/include/datacite-relationType-v2.xsd +3 -0
  89. data/resources/kernel-2.1/include/datacite-resourceType-v1.1.xsd +22 -0
  90. data/resources/kernel-2.1/include/datacite-resourceType-v2.xsd +3 -0
  91. data/resources/kernel-2.1/include/datacite-titleType-v1.1.xsd +11 -0
  92. data/resources/kernel-2.1/include/datacite-titleType-v2.xsd +3 -0
  93. data/resources/kernel-2.1/metadata.xsd +315 -0
  94. data/resources/kernel-2.2/include/datacite-contributorType-v2.xsd +29 -0
  95. data/resources/kernel-2.2/include/datacite-dateType-v2.xsd +21 -0
  96. data/resources/kernel-2.2/include/datacite-descriptionType-v2.xsd +15 -0
  97. data/resources/kernel-2.2/include/datacite-relatedIdentifierType-v2.xsd +25 -0
  98. data/resources/kernel-2.2/include/datacite-relationType-v2.xsd +29 -0
  99. data/resources/kernel-2.2/include/datacite-resourceType-v2.xsd +23 -0
  100. data/resources/kernel-2.2/include/datacite-titleType-v2.xsd +10 -0
  101. data/resources/kernel-2.2/metadata.xsd +316 -0
  102. data/resources/kernel-3/include/datacite-contributorType-v3.1.xsd +35 -0
  103. data/resources/kernel-3/include/datacite-dateType-v3.xsd +21 -0
  104. data/resources/kernel-3/include/datacite-descriptionType-v3.xsd +17 -0
  105. data/resources/kernel-3/include/datacite-relatedIdentifierType-v3.1.xsd +30 -0
  106. data/resources/kernel-3/include/datacite-relationType-v3.1.xsd +38 -0
  107. data/resources/kernel-3/include/datacite-resourceType-v3.xsd +26 -0
  108. data/resources/kernel-3/include/datacite-titleType-v3.xsd +12 -0
  109. data/resources/kernel-3/include/xml.xsd +286 -0
  110. data/resources/kernel-3/metadata.xsd +380 -0
  111. data/resources/kernel-3.0/include/datacite-contributorType-v3.xsd +33 -0
  112. data/resources/kernel-3.0/include/datacite-dateType-v3.xsd +21 -0
  113. data/resources/kernel-3.0/include/datacite-descriptionType-v3.xsd +17 -0
  114. data/resources/kernel-3.0/include/datacite-relatedIdentifierType-v3.xsd +27 -0
  115. data/resources/kernel-3.0/include/datacite-relationType-v3.xsd +33 -0
  116. data/resources/kernel-3.0/include/datacite-resourceType-v3.xsd +26 -0
  117. data/resources/kernel-3.0/include/datacite-titleType-v3.xsd +12 -0
  118. data/resources/kernel-3.0/include/xml.xsd +286 -0
  119. data/resources/kernel-3.0/metadata.xsd +377 -0
  120. data/resources/kernel-3.1/include/datacite-contributorType-v3.1.xsd +35 -0
  121. data/resources/kernel-3.1/include/datacite-dateType-v3.xsd +21 -0
  122. data/resources/kernel-3.1/include/datacite-descriptionType-v3.xsd +17 -0
  123. data/resources/kernel-3.1/include/datacite-relatedIdentifierType-v3.1.xsd +30 -0
  124. data/resources/kernel-3.1/include/datacite-relationType-v3.1.xsd +38 -0
  125. data/resources/kernel-3.1/include/datacite-resourceType-v3.xsd +26 -0
  126. data/resources/kernel-3.1/include/datacite-titleType-v3.xsd +12 -0
  127. data/resources/kernel-3.1/include/xml.xsd +286 -0
  128. data/resources/kernel-3.1/metadata.xsd +380 -0
  129. data/resources/kernel-4/include/datacite-contributorType-v4.xsd +35 -0
  130. data/resources/kernel-4/include/datacite-dateType-v4.xsd +25 -0
  131. data/resources/kernel-4/include/datacite-descriptionType-v4.xsd +19 -0
  132. data/resources/kernel-4/include/datacite-funderIdentifierType-v4.xsd +16 -0
  133. data/resources/kernel-4/include/datacite-nameType-v4.xsd +10 -0
  134. data/resources/kernel-4/include/datacite-numberType-v4.xsd +12 -0
  135. data/resources/kernel-4/include/datacite-relatedIdentifierType-v4.xsd +34 -0
  136. data/resources/kernel-4/include/datacite-relationType-v4.xsd +51 -0
  137. data/resources/kernel-4/include/datacite-resourceType-v4.xsd +43 -0
  138. data/resources/kernel-4/include/datacite-titleType-v4.xsd +14 -0
  139. data/resources/kernel-4/include/xml.xsd +286 -0
  140. data/resources/kernel-4/metadata.xsd +707 -0
  141. data/resources/kernel-4.0/include/datacite-contributorType-v4.xsd +35 -0
  142. data/resources/kernel-4.0/include/datacite-dateType-v4.xsd +21 -0
  143. data/resources/kernel-4.0/include/datacite-descriptionType-v4.xsd +19 -0
  144. data/resources/kernel-4.0/include/datacite-funderIdentifierType-v4.xsd +15 -0
  145. data/resources/kernel-4.0/include/datacite-relatedIdentifierType-v4.xsd +32 -0
  146. data/resources/kernel-4.0/include/datacite-relationType-v4.xsd +39 -0
  147. data/resources/kernel-4.0/include/datacite-resourceType-v4.xsd +26 -0
  148. data/resources/kernel-4.0/include/datacite-titleType-v4.xsd +14 -0
  149. data/resources/kernel-4.0/include/xml.xsd +286 -0
  150. data/resources/kernel-4.0/metadata.xsd +470 -0
  151. data/resources/kernel-4.1/include/datacite-contributorType-v4.xsd +35 -0
  152. data/resources/kernel-4.1/include/datacite-dateType-v4.1.xsd +23 -0
  153. data/resources/kernel-4.1/include/datacite-descriptionType-v4.xsd +19 -0
  154. data/resources/kernel-4.1/include/datacite-funderIdentifierType-v4.xsd +15 -0
  155. data/resources/kernel-4.1/include/datacite-nameType-v4.1.xsd +10 -0
  156. data/resources/kernel-4.1/include/datacite-relatedIdentifierType-v4.xsd +32 -0
  157. data/resources/kernel-4.1/include/datacite-relationType-v4.1.xsd +46 -0
  158. data/resources/kernel-4.1/include/datacite-resourceType-v4.1.xsd +28 -0
  159. data/resources/kernel-4.1/include/datacite-titleType-v4.xsd +14 -0
  160. data/resources/kernel-4.1/include/xml.xsd +286 -0
  161. data/resources/kernel-4.1/metadata.xsd +483 -0
  162. data/resources/kernel-4.2/include/datacite-contributorType-v4.xsd +35 -0
  163. data/resources/kernel-4.2/include/datacite-dateType-v4.xsd +25 -0
  164. data/resources/kernel-4.2/include/datacite-descriptionType-v4.xsd +19 -0
  165. data/resources/kernel-4.2/include/datacite-funderIdentifierType-v4.xsd +15 -0
  166. data/resources/kernel-4.2/include/datacite-nameType-v4.xsd +10 -0
  167. data/resources/kernel-4.2/include/datacite-relatedIdentifierType-v4.xsd +34 -0
  168. data/resources/kernel-4.2/include/datacite-relationType-v4.xsd +49 -0
  169. data/resources/kernel-4.2/include/datacite-resourceType-v4.xsd +28 -0
  170. data/resources/kernel-4.2/include/datacite-titleType-v4.xsd +14 -0
  171. data/resources/kernel-4.2/include/xml.xsd +286 -0
  172. data/resources/kernel-4.2/metadata.xsd +479 -0
  173. data/resources/kernel-4.3/include/datacite-contributorType-v4.xsd +35 -0
  174. data/resources/kernel-4.3/include/datacite-dateType-v4.xsd +25 -0
  175. data/resources/kernel-4.3/include/datacite-descriptionType-v4.xsd +19 -0
  176. data/resources/kernel-4.3/include/datacite-funderIdentifierType-v4.xsd +16 -0
  177. data/resources/kernel-4.3/include/datacite-nameType-v4.xsd +10 -0
  178. data/resources/kernel-4.3/include/datacite-relatedIdentifierType-v4.xsd +34 -0
  179. data/resources/kernel-4.3/include/datacite-relationType-v4.xsd +49 -0
  180. data/resources/kernel-4.3/include/datacite-resourceType-v4.xsd +28 -0
  181. data/resources/kernel-4.3/include/datacite-titleType-v4.xsd +14 -0
  182. data/resources/kernel-4.3/include/xml.xsd +286 -0
  183. data/resources/kernel-4.3/metadata.xsd +515 -0
  184. data/resources/kernel-4.4/include/datacite-contributorType-v4.xsd +35 -0
  185. data/resources/kernel-4.4/include/datacite-dateType-v4.xsd +25 -0
  186. data/resources/kernel-4.4/include/datacite-descriptionType-v4.xsd +19 -0
  187. data/resources/kernel-4.4/include/datacite-funderIdentifierType-v4.xsd +16 -0
  188. data/resources/kernel-4.4/include/datacite-nameType-v4.xsd +10 -0
  189. data/resources/kernel-4.4/include/datacite-numberType-v4.xsd +12 -0
  190. data/resources/kernel-4.4/include/datacite-relatedIdentifierType-v4.xsd +34 -0
  191. data/resources/kernel-4.4/include/datacite-relationType-v4.xsd +51 -0
  192. data/resources/kernel-4.4/include/datacite-resourceType-v4.xsd +43 -0
  193. data/resources/kernel-4.4/include/datacite-titleType-v4.xsd +14 -0
  194. data/resources/kernel-4.4/include/xml.xsd +286 -0
  195. data/resources/kernel-4.4/metadata.xsd +707 -0
  196. data/resources/oecd/dfg-mappings.json +1866 -0
  197. data/resources/oecd/for-mappings.json +1099 -0
  198. data/resources/oecd/fos-mappings.json +198 -0
  199. data/resources/schema_org/jsonldcontext.json +7477 -0
  200. data/resources/spdx/licenses.json +5297 -0
  201. data/resources/xml.xsd +286 -0
  202. data/spec/array_spec.rb +22 -0
  203. data/spec/author_utils_spec.rb +193 -0
  204. data/spec/cli_spec.rb +226 -0
  205. data/spec/datacite_utils_spec.rb +178 -0
  206. data/spec/doi_utils_spec.rb +314 -0
  207. data/spec/find_from_format_spec.rb +114 -0
  208. data/spec/fixtures/aida.json +82 -0
  209. data/spec/fixtures/cgimp_package.json +18 -0
  210. data/spec/fixtures/cit_package.json +19 -0
  211. data/spec/fixtures/citeproc-no-author.json +26 -0
  212. data/spec/fixtures/citeproc-no-categories.json +21 -0
  213. data/spec/fixtures/citeproc.json +30 -0
  214. data/spec/fixtures/codemeta.json +86 -0
  215. data/spec/fixtures/codemeta_v2.json +86 -0
  216. data/spec/fixtures/crosscite.json +63 -0
  217. data/spec/fixtures/crossref.bib +14 -0
  218. data/spec/fixtures/crossref.ris +15 -0
  219. data/spec/fixtures/crossref.xml +606 -0
  220. data/spec/fixtures/datacite-empty-sizes.xml +57 -0
  221. data/spec/fixtures/datacite-example-affiliation.xml +114 -0
  222. data/spec/fixtures/datacite-example-ancientdates-v4.3.xml +29 -0
  223. data/spec/fixtures/datacite-example-complicated-tba.xml +56 -0
  224. data/spec/fixtures/datacite-example-complicated-v3.0.xml +48 -0
  225. data/spec/fixtures/datacite-example-complicated-v4.0.xml +54 -0
  226. data/spec/fixtures/datacite-example-complicated-v4.1.xml +57 -0
  227. data/spec/fixtures/datacite-example-dissertation-v4.4.xml +56 -0
  228. data/spec/fixtures/datacite-example-escaped-text.xml +56 -0
  229. data/spec/fixtures/datacite-example-full-v4.4.xml +114 -0
  230. data/spec/fixtures/datacite-example-geolocation-2.xml +141 -0
  231. data/spec/fixtures/datacite-example-geolocation.xml +66 -0
  232. data/spec/fixtures/datacite-example-polygon-v4.1.xml +163 -0
  233. data/spec/fixtures/datacite-example-relateditems.xml +61 -0
  234. data/spec/fixtures/datacite-example-xs-string.xml +28 -0
  235. data/spec/fixtures/datacite-formats-with-xs.xml +22 -0
  236. data/spec/fixtures/datacite-funderIdentifier.xml +78 -0
  237. data/spec/fixtures/datacite-geolocation-empty.xml +159 -0
  238. data/spec/fixtures/datacite-geolocationpolygons-multiple.xml +76 -0
  239. data/spec/fixtures/datacite-metadata-sample-complicated-v2.2.xml +52 -0
  240. data/spec/fixtures/datacite-multiple-language.xml +38 -0
  241. data/spec/fixtures/datacite-multiple-rights.xml +59 -0
  242. data/spec/fixtures/datacite-schema-2.2.xml +80 -0
  243. data/spec/fixtures/datacite-seriesinformation.xml +41 -0
  244. data/spec/fixtures/datacite-space-in-sizes.xml +52 -0
  245. data/spec/fixtures/datacite-xml-lang.xml +51 -0
  246. data/spec/fixtures/datacite.json +83 -0
  247. data/spec/fixtures/datacite.xml +40 -0
  248. data/spec/fixtures/datacite_dataset.xml +58 -0
  249. data/spec/fixtures/datacite_malformed_creator.xml +52 -0
  250. data/spec/fixtures/datacite_missing_creator.xml +33 -0
  251. data/spec/fixtures/datacite_schema_3.xml +58 -0
  252. data/spec/fixtures/datacite_software.json +21 -0
  253. data/spec/fixtures/datacite_software_missing_comma.json +18 -0
  254. data/spec/fixtures/datacite_software_overlapping_keys.json +18 -0
  255. data/spec/fixtures/datacite_software_version.json +74 -0
  256. data/spec/fixtures/edam_package.json +12 -0
  257. data/spec/fixtures/funding_reference.xml +53 -0
  258. data/spec/fixtures/gtex.xml +71 -0
  259. data/spec/fixtures/maremma/codemeta.json +36 -0
  260. data/spec/fixtures/nist.xml +35 -0
  261. data/spec/fixtures/ns0.xml +2 -0
  262. data/spec/fixtures/pure.bib +14 -0
  263. data/spec/fixtures/pure.ris +15 -0
  264. data/spec/fixtures/pure.xml +188 -0
  265. data/spec/fixtures/ris_bug.ris +9 -0
  266. data/spec/fixtures/schema_4.0.xml +140 -0
  267. data/spec/fixtures/schema_org.json +49 -0
  268. data/spec/fixtures/schema_org_front-matter.json +32 -0
  269. data/spec/fixtures/schema_org_geolocation.json +82 -0
  270. data/spec/fixtures/schema_org_geoshape.json +550 -0
  271. data/spec/fixtures/schema_org_gtex.json +75 -0
  272. data/spec/fixtures/schema_org_list.json +12623 -0
  273. data/spec/fixtures/schema_org_tdl_iodp_invalid_authors.json +25 -0
  274. data/spec/fixtures/schema_org_topmed.json +53 -0
  275. data/spec/fixtures/schema_org_type_as_array.json +41 -0
  276. data/spec/fixtures/vcr_cassettes/Briard_CLI/convert_from_id/crossref/default.yml +121 -0
  277. data/spec/fixtures/vcr_cassettes/Briard_CLI/convert_from_id/crossref/to_bibtex.yml +121 -0
  278. data/spec/fixtures/vcr_cassettes/Briard_CLI/convert_from_id/crossref/to_citation.yml +121 -0
  279. data/spec/fixtures/vcr_cassettes/Briard_CLI/convert_from_id/crossref/to_crossref.yml +121 -0
  280. data/spec/fixtures/vcr_cassettes/Briard_CLI/convert_from_id/crossref/to_datacite.yml +121 -0
  281. data/spec/fixtures/vcr_cassettes/Briard_CLI/convert_from_id/crossref/to_jats.yml +121 -0
  282. data/spec/fixtures/vcr_cassettes/Briard_CLI/convert_from_id/crossref/to_schema_org.yml +121 -0
  283. data/spec/fixtures/vcr_cassettes/Briard_CLI/convert_from_id/datacite/default.yml +110 -0
  284. data/spec/fixtures/vcr_cassettes/Briard_CLI/convert_from_id/datacite/to_bibtex.yml +110 -0
  285. data/spec/fixtures/vcr_cassettes/Briard_CLI/convert_from_id/datacite/to_citation.yml +110 -0
  286. data/spec/fixtures/vcr_cassettes/Briard_CLI/convert_from_id/datacite/to_datacite.yml +110 -0
  287. data/spec/fixtures/vcr_cassettes/Briard_CLI/convert_from_id/datacite/to_datacite_json.yml +110 -0
  288. data/spec/fixtures/vcr_cassettes/Briard_CLI/convert_from_id/datacite/to_jats.yml +110 -0
  289. data/spec/fixtures/vcr_cassettes/Briard_CLI/convert_from_id/datacite/to_schema_org.yml +110 -0
  290. data/spec/fixtures/vcr_cassettes/Briard_CLI/convert_from_id/schema_org/default.yml +117 -0
  291. data/spec/fixtures/vcr_cassettes/Briard_CLI/convert_from_id/schema_org/to_datacite.yml +117 -0
  292. data/spec/fixtures/vcr_cassettes/Briard_CLI/convert_from_id/schema_org/to_schema_org.yml +117 -0
  293. data/spec/fixtures/vcr_cassettes/Briard_CLI/find_from_format_by_id/crossref.yml +52 -0
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  667. data/spec/fixtures/vcr_cassettes/Briard_Metadata/write_metadata_as_jats_xml/with_data_citation_schema_org.yml +117 -0
  668. data/spec/fixtures/vcr_cassettes/Briard_Metadata/write_metadata_as_jats_xml/with_editor.yml +66 -0
  669. data/spec/fixtures/vcr_cassettes/Briard_Metadata/write_metadata_as_rdf_xml/BlogPosting.yml +61 -0
  670. data/spec/fixtures/vcr_cassettes/Briard_Metadata/write_metadata_as_rdf_xml/BlogPosting_schema_org.yml +117 -0
  671. data/spec/fixtures/vcr_cassettes/Briard_Metadata/write_metadata_as_rdf_xml/journal_article.yml +72 -0
  672. data/spec/fixtures/vcr_cassettes/Briard_Metadata/write_metadata_as_rdf_xml/maremma.yml +75 -0
  673. data/spec/fixtures/vcr_cassettes/Briard_Metadata/write_metadata_as_rdf_xml/with_pages.yml +69 -0
  674. data/spec/fixtures/vcr_cassettes/Briard_Metadata/write_metadata_as_ris/BlogPosting.yml +61 -0
  675. data/spec/fixtures/vcr_cassettes/Briard_Metadata/write_metadata_as_ris/BlogPosting_schema_org.yml +117 -0
  676. data/spec/fixtures/vcr_cassettes/Briard_Metadata/write_metadata_as_ris/Dataset.yml +61 -0
  677. data/spec/fixtures/vcr_cassettes/Briard_Metadata/write_metadata_as_ris/alternate_name.yml +61 -0
  678. data/spec/fixtures/vcr_cassettes/Briard_Metadata/write_metadata_as_ris/journal_article.yml +72 -0
  679. data/spec/fixtures/vcr_cassettes/Briard_Metadata/write_metadata_as_ris/keywords_with_subject_scheme.yml +61 -0
  680. data/spec/fixtures/vcr_cassettes/Briard_Metadata/write_metadata_as_ris/maremma.yml +75 -0
  681. data/spec/fixtures/vcr_cassettes/Briard_Metadata/write_metadata_as_ris/with_pages.yml +69 -0
  682. data/spec/fixtures/vcr_cassettes/Briard_Metadata/write_metadata_as_schema_org/Funding.yml +110 -0
  683. data/spec/fixtures/vcr_cassettes/Briard_Metadata/write_metadata_as_schema_org/Funding_OpenAIRE.yml +110 -0
  684. data/spec/fixtures/vcr_cassettes/Briard_Metadata/write_metadata_as_schema_org/Schema_org_JSON.yml +61 -0
  685. data/spec/fixtures/vcr_cassettes/Briard_Metadata/write_metadata_as_schema_org/Schema_org_JSON_Cyark.yml +110 -0
  686. data/spec/fixtures/vcr_cassettes/Briard_Metadata/write_metadata_as_schema_org/Schema_org_JSON_IsSupplementTo.yml +110 -0
  687. data/spec/fixtures/vcr_cassettes/Briard_Metadata/write_metadata_as_schema_org/Schema_org_JSON_isReferencedBy.yml +61 -0
  688. data/spec/fixtures/vcr_cassettes/Briard_Metadata/write_metadata_as_schema_org/alternate_identifiers.yml +61 -0
  689. data/spec/fixtures/vcr_cassettes/Briard_Metadata/write_metadata_as_schema_org/data_catalog.yml +61 -0
  690. data/spec/fixtures/vcr_cassettes/Briard_Metadata/write_metadata_as_schema_org/geo_location_box.yml +61 -0
  691. data/spec/fixtures/vcr_cassettes/Briard_Metadata/write_metadata_as_schema_org/interactive_resource_without_dates.yml +61 -0
  692. data/spec/fixtures/vcr_cassettes/Briard_Metadata/write_metadata_as_schema_org/journal_article.yml +72 -0
  693. data/spec/fixtures/vcr_cassettes/Briard_Metadata/write_metadata_as_schema_org/maremma_schema_org_JSON.yml +75 -0
  694. data/spec/fixtures/vcr_cassettes/Briard_Metadata/write_metadata_as_schema_org/series_information.yml +61 -0
  695. data/spec/fixtures/vcr_cassettes/Briard_Metadata/write_metadata_as_schema_org/subject_scheme.yml +61 -0
  696. data/spec/fixtures/vcr_cassettes/Briard_Metadata/write_metadata_as_schema_org/subject_scheme_multiple_keywords.yml +61 -0
  697. data/spec/fixtures/vcr_cassettes/Briard_Metadata/write_metadata_as_turtle/BlogPosting.yml +61 -0
  698. data/spec/fixtures/vcr_cassettes/Briard_Metadata/write_metadata_as_turtle/BlogPosting_schema_org.yml +117 -0
  699. data/spec/fixtures/vcr_cassettes/Briard_Metadata/write_metadata_as_turtle/Dataset.yml +61 -0
  700. data/spec/fixtures/vcr_cassettes/Briard_Metadata/write_metadata_as_turtle/journal_article.yml +72 -0
  701. data/spec/fixtures/vcr_cassettes/Briard_Metadata/write_metadata_as_turtle/with_pages.yml +69 -0
  702. data/spec/fixtures/vivli.xml +1 -0
  703. data/spec/metadata_spec.rb +165 -0
  704. data/spec/readers/bibtex_reader_spec.rb +63 -0
  705. data/spec/readers/citeproc_reader_spec.rb +61 -0
  706. data/spec/readers/codemeta_reader_spec.rb +138 -0
  707. data/spec/readers/crosscite_reader_spec.rb +41 -0
  708. data/spec/readers/crossref_reader_spec.rb +1117 -0
  709. data/spec/readers/datacite_json_reader_spec.rb +80 -0
  710. data/spec/readers/datacite_reader_spec.rb +1655 -0
  711. data/spec/readers/npm_reader_spec.rb +66 -0
  712. data/spec/readers/ris_reader_spec.rb +75 -0
  713. data/spec/readers/schema_org_reader_spec.rb +376 -0
  714. data/spec/spec_helper.rb +94 -0
  715. data/spec/utils_spec.rb +617 -0
  716. data/spec/writers/bibtex_writer_spec.rb +195 -0
  717. data/spec/writers/citation_writer_spec.rb +52 -0
  718. data/spec/writers/citeproc_writer_spec.rb +296 -0
  719. data/spec/writers/codemeta_writer_spec.rb +45 -0
  720. data/spec/writers/crosscite_writer_spec.rb +122 -0
  721. data/spec/writers/crossref_writer_spec.rb +88 -0
  722. data/spec/writers/csv_writer_spec.rb +94 -0
  723. data/spec/writers/datacite_json_writer_spec.rb +90 -0
  724. data/spec/writers/datacite_writer_spec.rb +428 -0
  725. data/spec/writers/jats_writer_spec.rb +193 -0
  726. data/spec/writers/rdf_xml_writer_spec.rb +86 -0
  727. data/spec/writers/ris_writer_spec.rb +208 -0
  728. data/spec/writers/schema_org_writer_spec.rb +369 -0
  729. data/spec/writers/turtle_writer_spec.rb +84 -0
  730. metadata +1347 -0
@@ -0,0 +1,193 @@
1
+ # frozen_string_literal: true
2
+
3
+ require 'spec_helper'
4
+
5
+ describe Briard::Metadata, vcr: true do
6
+ context "write metadata as jats xml" do
7
+ it "with data citation" do
8
+ input = "10.7554/eLife.01567"
9
+ subject = Briard::Metadata.new(input: input, from: "crossref")
10
+ jats = Maremma.from_xml(subject.jats).fetch("element_citation", {})
11
+ expect(jats.dig("publication_type")).to eq("journal")
12
+ expect(jats.dig("article_title")).to eq("Automated quantitative histology reveals vascular morphodynamics during Arabidopsis hypocotyl secondary growth")
13
+ expect(jats.dig("source")).to eq("eLife")
14
+ expect(jats.dig("person_group", "name").length).to eq(5)
15
+ expect(jats.dig("person_group", "name").first).to eq("surname"=>"Sankar", "given_names"=>"Martial")
16
+ expect(jats.dig("year")).to eq("iso_8601_date"=>"2014-02-11", "__content__"=>"2014")
17
+ expect(jats.dig("month")).to eq("02")
18
+ expect(jats.dig("day")).to eq("11")
19
+ end
20
+
21
+ it "with ORCID ID" do
22
+ input = "https://doi.org/10.1155/2012/291294"
23
+ subject = Briard::Metadata.new(input: input, from: "crossref")
24
+ jats = Maremma.from_xml(subject.jats).fetch("element_citation", {})
25
+ expect(jats.dig("publication_type")).to eq("journal")
26
+ expect(jats.dig("article_title")).to eq("Delineating a Retesting Zone Using Receiver Operating Characteristic Analysis on Serial QuantiFERON Tuberculosis Test Results in US Healthcare Workers")
27
+ expect(jats.dig("source")).to eq("Pulmonary Medicine")
28
+ expect(jats.dig("person_group", "name").length).to eq(7)
29
+ expect(jats.dig("person_group", "name").first).to eq("surname"=>"Thanassi", "given_names"=>"Wendy")
30
+ expect(jats.dig("year")).to eq("iso_8601_date"=>"2012", "__content__"=>"2012")
31
+ end
32
+
33
+ it "with editor" do
34
+ input = "https://doi.org/10.1371/journal.pone.0000030"
35
+ subject = Briard::Metadata.new(input: input, from: "crossref")
36
+ jats = Maremma.from_xml(subject.jats).fetch("element_citation", {})
37
+ expect(jats.dig("publication_type")).to eq("journal")
38
+ expect(jats.dig("article_title")).to eq("Triose Phosphate Isomerase Deficiency Is Caused by Altered Dimerization???Not Catalytic Inactivity???of the Mutant Enzymes")
39
+ expect(jats.dig("source")).to eq("PLoS ONE")
40
+ expect(jats.dig("person_group", 0, "name").length).to eq(5)
41
+ expect(jats.dig("person_group", 0, "name").first).to eq("surname"=>"Ralser", "given_names"=>"Markus")
42
+ expect(jats.dig("person_group", 1, "name")).to eq("surname"=>"Janbon", "given_names"=>"Guilhem")
43
+ expect(jats.dig("year")).to eq("iso_8601_date"=>"2006-12-20", "__content__"=>"2006")
44
+ expect(jats.dig("month")).to eq("12")
45
+ expect(jats.dig("day")).to eq("20")
46
+ expect(jats.dig("fpage")).to eq("e30")
47
+ expect(jats.dig("pub_id")).to eq("pub_id_type"=>"doi", "__content__"=>"10.1371/journal.pone.0000030")
48
+ end
49
+
50
+ it "book chapter" do
51
+ input = "https://doi.org/10.5005/jp/books/12414_3"
52
+ subject = Briard::Metadata.new(input: input, from: "crossref")
53
+ jats = Maremma.from_xml(subject.jats).fetch("element_citation", {})
54
+ expect(jats.dig("publication_type")).to eq("chapter")
55
+ expect(jats.dig("chapter_title")).to eq("Physical Examinations")
56
+ expect(jats.dig("source")).to eq("Jaypee Brothers Medical Publishing")
57
+ expect(jats.dig("person_group", "name")).to eq("surname"=>"Saha", "given_names"=>"Ashis")
58
+ expect(jats.dig("year")).to eq("iso_8601_date"=>"2015", "__content__"=>"2015")
59
+ expect(jats.dig("fpage")).to eq("27")
60
+ expect(jats.dig("lpage")).to eq("27")
61
+ expect(jats.dig("pub_id")).to eq("pub_id_type"=>"doi", "__content__"=>"10.5005/jp/books/12414_3")
62
+ end
63
+
64
+ it "Crossref DOI" do
65
+ input = fixture_path + "crossref.bib"
66
+ subject = Briard::Metadata.new(input: input, from: "bibtex")
67
+ jats = Maremma.from_xml(subject.jats).fetch("element_citation", {})
68
+ expect(jats.dig("publication_type")).to eq("journal")
69
+ expect(jats.dig("article_title")).to eq("Automated quantitative histology reveals vascular morphodynamics during Arabidopsis hypocotyl secondary growth")
70
+ expect(jats.dig("source")).to eq("eLife")
71
+ expect(jats.dig("person_group", "name").length).to eq(5)
72
+ expect(jats.dig("person_group", "name").first).to eq("surname"=>"Sankar", "given_names"=>"Martial")
73
+ expect(jats.dig("year")).to eq("iso_8601_date"=>"2014", "__content__"=>"2014")
74
+ expect(jats.dig("month")).to be_nil
75
+ expect(jats.dig("pub_id")).to eq("pub_id_type"=>"doi", "__content__"=>"10.7554/elife.01567")
76
+ end
77
+
78
+ it "BlogPosting Citeproc JSON" do
79
+ input = fixture_path + "citeproc.json"
80
+ subject = Briard::Metadata.new(input: input, from: "citeproc")
81
+ jats = Maremma.from_xml(subject.jats).fetch("element_citation", {})
82
+ expect(jats.dig("publication_type")).to be_nil
83
+ expect(jats.dig("source")).to eq("Eating your own Dog Food")
84
+ expect(jats.dig("publisher_name")).to eq("DataCite")
85
+ expect(jats.dig("person_group", "name")).to eq("surname"=>"Fenner", "given_names"=>"Martin")
86
+ expect(jats.dig("year")).to eq("iso_8601_date"=>"2016-12-20", "__content__"=>"2016")
87
+ expect(jats.dig("month")).to eq("12")
88
+ expect(jats.dig("day")).to eq("20")
89
+ expect(jats.dig("pub_id")).to eq("pub_id_type"=>"doi", "__content__"=>"10.5438/4k3m-nyvg")
90
+ end
91
+
92
+ it "rdataone" do
93
+ input = fixture_path + 'codemeta.json'
94
+ subject = Briard::Metadata.new(input: input, from: "codemeta")
95
+ jats = Maremma.from_xml(subject.jats).fetch("element_citation", {})
96
+ expect(jats.dig("publication_type")).to eq("software")
97
+ expect(jats.dig("source")).to eq("R Interface to the DataONE REST API")
98
+ expect(jats.dig("publisher_name")).to eq("https://cran.r-project.org")
99
+ expect(jats.dig("person_group", "name").length).to eq(3)
100
+ expect(jats.dig("person_group", "name").first).to eq("surname"=>"Jones", "given_names"=>"Matt")
101
+ expect(jats.dig("year")).to eq("iso_8601_date"=>"2016-05-27", "__content__"=>"2016")
102
+ expect(jats.dig("month")).to eq("05")
103
+ expect(jats.dig("day")).to eq("27")
104
+ expect(jats.dig("version")).to eq("2.0.0")
105
+ expect(jats.dig("pub_id")).to eq("pub_id_type"=>"doi", "__content__"=>"10.5063/f1m61h5x")
106
+ end
107
+
108
+ it "maremma" do
109
+ input = "https://github.com/datacite/maremma"
110
+ subject = Briard::Metadata.new(input: input, from: "codemeta")
111
+ jats = Maremma.from_xml(subject.jats).fetch("element_citation", {})
112
+ expect(jats.dig("publication_type")).to eq("software")
113
+ expect(jats.dig("source")).to eq("Maremma: a Ruby library for simplified network calls")
114
+ expect(jats.dig("publisher_name")).to eq("DataCite")
115
+ expect(jats.dig("person_group", "name")).to eq("surname"=>"Fenner", "given_names"=>"Martin")
116
+ expect(jats.dig("year")).to eq("iso_8601_date"=>"2017-02-24", "__content__"=>"2017")
117
+ expect(jats.dig("month")).to eq("02")
118
+ expect(jats.dig("day")).to eq("24")
119
+ expect(jats.dig("pub_id")).to eq("pub_id_type"=>"doi", "__content__"=>"10.5438/qeg0-3gm3")
120
+ end
121
+
122
+ it "Text pass-thru" do
123
+ input = "https://doi.org/10.23640/07243.5153971"
124
+ subject = Briard::Metadata.new(input: input, from: "datacite")
125
+ jats = Maremma.from_xml(subject.jats).fetch("element_citation", {})
126
+ expect(jats.dig("publication_type")).to eq("journal")
127
+ expect(jats.dig("article_title")).to eq("Recommendation of: ORCID Works Metadata Working Group")
128
+ expect(jats.dig("source")).to eq("Figshare")
129
+ expect(jats.dig("person_group", "name").length).to eq(20)
130
+ expect(jats.dig("person_group", "name").first).to eq("surname"=>"Paglione", "given_names"=>"Laura")
131
+ expect(jats.dig("year")).to eq("iso_8601_date"=>"2017", "__content__"=>"2017")
132
+ expect(jats.dig("pub_id")).to eq("pub_id_type"=>"doi", "__content__"=>"10.23640/07243.5153971")
133
+ end
134
+
135
+ it "Dataset in schema 4.0" do
136
+ input = "https://doi.org/10.5061/DRYAD.8515"
137
+ subject = Briard::Metadata.new(input: input, from: "datacite", regenerate: true)
138
+ jats = Maremma.from_xml(subject.jats).fetch("element_citation", {})
139
+ expect(jats.dig("publication_type")).to eq("data")
140
+ expect(jats.dig("data_title")).to eq("Data from: A new malaria agent in African hominids.")
141
+ expect(jats.dig("source")).to eq("Dryad")
142
+ expect(jats.dig("person_group", "name").length).to eq(8)
143
+ expect(jats.dig("person_group", "name").first).to eq("surname"=>"Ollomo", "given_names"=>"Benjamin")
144
+ expect(jats.dig("year")).to eq("iso_8601_date"=>"2011", "__content__"=>"2011")
145
+ expect(jats.dig("pub_id")).to eq("pub_id_type"=>"doi", "__content__"=>"10.5061/dryad.8515")
146
+ end
147
+
148
+ it "with data citation schema.org" do
149
+ input = "https://blog.datacite.org/eating-your-own-dog-food/"
150
+ subject = Briard::Metadata.new(input: input, from: "schema_org")
151
+ jats = Maremma.from_xml(subject.jats).fetch("element_citation", {})
152
+ expect(jats.dig("publication_type")).to be_nil
153
+ expect(jats.dig("source")).to eq("Eating your own Dog Food")
154
+ expect(jats.dig("publisher_name")).to eq("DataCite")
155
+ expect(jats.dig("person_group", "name")).to eq("surname"=>"Fenner", "given_names"=>"Martin")
156
+ expect(jats.dig("year")).to eq("iso_8601_date"=>"2016-12-20", "__content__"=>"2016")
157
+ expect(jats.dig("month")).to eq("12")
158
+ expect(jats.dig("day")).to eq("20")
159
+ expect(jats.dig("pub_id")).to eq("pub_id_type"=>"doi", "__content__"=>"10.5438/4k3m-nyvg")
160
+ end
161
+
162
+ it "interactive resource without dates" do
163
+ input = "https://doi.org/10.34747/g6yb-3412"
164
+ subject = Briard::Metadata.new(input: input, from: "datacite")
165
+ jats = Maremma.from_xml(subject.jats).fetch("element_citation", {})
166
+ expect(jats.dig("publication_type")).to be_nil
167
+ expect(jats.dig("source")).to eq("Exploring the \"Many analysts, one dataset\" project from COS")
168
+ expect(jats.dig("publisher_name")).to eq("Gigantum, Inc.")
169
+ expect(jats.dig("person_group", "name")).to eq("given_names"=>"Dav", "surname"=>"Clark")
170
+ expect(jats.dig("year")).to eq("__content__"=>"2019", "iso_8601_date"=>"2019")
171
+ expect(jats.dig("month")).to be_nil
172
+ expect(jats.dig("day")).to be_nil
173
+ expect(jats.dig("pub_id")).to eq("pub_id_type"=>"doi", "__content__"=>"10.34747/g6yb-3412")
174
+ end
175
+ end
176
+
177
+ context "change metadata as datacite xml" do
178
+ it "with data citation" do
179
+ input = "10.7554/eLife.01567"
180
+ subject = Briard::Metadata.new(input: input, from: "crossref")
181
+ jats = Maremma.from_xml(subject.jats).fetch("element_citation", {})
182
+ expect(jats.dig("publication_type")).to eq("journal")
183
+ expect(jats.dig("article_title")).to eq("Automated quantitative histology reveals vascular morphodynamics during Arabidopsis hypocotyl secondary growth")
184
+ expect(jats.dig("source")).to eq("eLife")
185
+ expect(jats.dig("person_group", "name").length).to eq(5)
186
+ expect(jats.dig("person_group", "name").first).to eq("surname"=>"Sankar", "given_names"=>"Martial")
187
+ expect(jats.dig("year")).to eq("iso_8601_date"=>"2014-02-11", "__content__"=>"2014")
188
+ expect(jats.dig("month")).to eq("02")
189
+ expect(jats.dig("day")).to eq("11")
190
+ expect(jats.dig("pub_id")).to eq("pub_id_type"=>"doi", "__content__"=>"10.7554/elife.01567")
191
+ end
192
+ end
193
+ end
@@ -0,0 +1,86 @@
1
+ # frozen_string_literal: true
2
+
3
+ require 'spec_helper'
4
+
5
+ describe Briard::Metadata, vcr: true do
6
+ context "write metadata as rdf xml" do
7
+ it "journal article" do
8
+ input = "10.7554/eLife.01567"
9
+ subject = Briard::Metadata.new(input: input, from: "crossref")
10
+ expect(subject.valid?).to be true
11
+ rdf_xml = Maremma.from_xml(subject.rdf_xml).fetch("RDF", {})
12
+ expect(rdf_xml.dig("ScholarlyArticle", "rdf:about")).to eq("https://doi.org/10.7554/elife.01567")
13
+ expect(rdf_xml.dig("ScholarlyArticle", "name")).to eq("Automated quantitative histology reveals vascular morphodynamics during Arabidopsis hypocotyl secondary growth")
14
+ expect(rdf_xml.dig("ScholarlyArticle", "datePublished", "__content__")).to eq("2014-02-11")
15
+ end
16
+
17
+ it "with pages" do
18
+ input = "https://doi.org/10.1155/2012/291294"
19
+ subject = Briard::Metadata.new(input: input, from: "crossref")
20
+ expect(subject.valid?).to be true
21
+ rdf_xml = Maremma.from_xml(subject.rdf_xml).fetch("RDF", {})
22
+ expect(rdf_xml.dig("ScholarlyArticle", "rdf:about")).to eq("https://doi.org/10.1155/2012/291294")
23
+ expect(rdf_xml.dig("ScholarlyArticle", "name")).to eq("Delineating a Retesting Zone Using Receiver Operating Characteristic Analysis on Serial QuantiFERON Tuberculosis Test Results in US Healthcare Workers")
24
+ expect(rdf_xml.dig("ScholarlyArticle", "datePublished", "__content__")).to eq("2012")
25
+ expect(rdf_xml.dig("ScholarlyArticle", "pageStart")).to eq("1")
26
+ expect(rdf_xml.dig("ScholarlyArticle", "pageEnd")).to eq("7")
27
+ end
28
+
29
+ it "Crossref DOI" do
30
+ input = fixture_path + "crossref.bib"
31
+ subject = Briard::Metadata.new(input: input, from: "bibtex")
32
+ expect(subject.valid?).to be true
33
+ rdf_xml = Maremma.from_xml(subject.rdf_xml).fetch("RDF", {})
34
+
35
+ expect(rdf_xml.dig("ScholarlyArticle", "rdf:about")).to eq("https://doi.org/10.7554/elife.01567")
36
+ expect(rdf_xml.dig("ScholarlyArticle", "name")).to eq("Automated quantitative histology reveals vascular morphodynamics during Arabidopsis hypocotyl secondary growth")
37
+ expect(rdf_xml.dig("ScholarlyArticle", "datePublished", "__content__")).to eq("2014")
38
+ expect(rdf_xml.dig("ScholarlyArticle", "periodical", "Journal", "name")).to eq("eLife")
39
+ end
40
+
41
+ it "BlogPosting" do
42
+ input = "https://doi.org/10.5438/4K3M-NYVG"
43
+ subject = Briard::Metadata.new(input: input, from: "datacite")
44
+ expect(subject.valid?).to be true
45
+ rdf_xml = Maremma.from_xml(subject.rdf_xml).fetch("RDF", {})
46
+ expect(rdf_xml.dig("ScholarlyArticle", "rdf:about")).to eq("https://doi.org/10.5438/4k3m-nyvg")
47
+ expect(rdf_xml.dig("ScholarlyArticle", "name")).to eq("Eating your own Dog Food")
48
+ expect(rdf_xml.dig("ScholarlyArticle", "keywords")).to eq("datacite, doi, metadata, FOS: Computer and information sciences, FOS: Computer and information sciences")
49
+ expect(rdf_xml.dig("ScholarlyArticle", "datePublished", "__content__")).to eq("2016-12-20")
50
+ end
51
+
52
+ it "BlogPosting Citeproc JSON" do
53
+ input = fixture_path + "citeproc.json"
54
+ subject = Briard::Metadata.new(input: input, from: "citeproc")
55
+ rdf_xml = Maremma.from_xml(subject.rdf_xml).fetch("RDF", {})
56
+ expect(rdf_xml.dig("BlogPosting", "rdf:about")).to eq("https://doi.org/10.5438/4k3m-nyvg")
57
+ expect(rdf_xml.dig("BlogPosting", "name")).to eq("Eating your own Dog Food")
58
+ expect(rdf_xml.dig("BlogPosting", "datePublished", "__content__")).to eq("2016-12-20")
59
+ end
60
+
61
+ it "maremma" do
62
+ input = "https://github.com/datacite/maremma"
63
+ subject = Briard::Metadata.new(input: input, from: "codemeta")
64
+ rdf_xml = Maremma.from_xml(subject.rdf_xml).fetch("RDF", {})
65
+ expect(rdf_xml.dig("SoftwareSourceCode", "rdf:about")).to eq("https://doi.org/10.5438/qeg0-3gm3")
66
+ expect(rdf_xml.dig("SoftwareSourceCode", "author", "Person", "rdf:about")).to eq("https://orcid.org/0000-0003-0077-4738")
67
+ expect(rdf_xml.dig("SoftwareSourceCode", "author", "Person", "name")).to eq("Martin Fenner")
68
+ expect(rdf_xml.dig("SoftwareSourceCode", "name")).to eq("Maremma: a Ruby library for simplified network calls")
69
+ expect(rdf_xml.dig("SoftwareSourceCode", "keywords")).to eq("faraday, excon, net/http")
70
+ expect(rdf_xml.dig("SoftwareSourceCode", "datePublished", "__content__")).to eq("2017-02-24")
71
+ end
72
+
73
+ it "BlogPosting schema.org" do
74
+ input = "https://blog.datacite.org/eating-your-own-dog-food/"
75
+ subject = Briard::Metadata.new(input: input, from: "schema_org")
76
+ expect(subject.valid?).to be true
77
+ rdf_xml = Maremma.from_xml(subject.rdf_xml).fetch("RDF", {})
78
+ expect(rdf_xml.dig("BlogPosting", "rdf:about")).to eq("https://doi.org/10.5438/4k3m-nyvg")
79
+ expect(rdf_xml.dig("BlogPosting", "author", "Person", "rdf:about")).to eq("https://orcid.org/0000-0003-1419-2405")
80
+ expect(rdf_xml.dig("BlogPosting", "author", "Person", "name")).to eq("Martin Fenner")
81
+ expect(rdf_xml.dig("BlogPosting", "name")).to eq("Eating your own Dog Food")
82
+ expect(rdf_xml.dig("BlogPosting", "keywords")).to eq("datacite, doi, metadata, featured")
83
+ expect(rdf_xml.dig("BlogPosting", "datePublished", "__content__")).to eq("2016-12-20")
84
+ end
85
+ end
86
+ end
@@ -0,0 +1,208 @@
1
+ # frozen_string_literal: true
2
+
3
+ require 'spec_helper'
4
+
5
+ describe Briard::Metadata, vcr: true do
6
+ context "write metadata as ris" do
7
+ it "journal article" do
8
+ input = "10.7554/eLife.01567"
9
+ subject = Briard::Metadata.new(input: input, from: "crossref")
10
+ expect(subject.valid?).to be true
11
+ ris = subject.ris.split("\r\n")
12
+ expect(ris[0]).to eq("TY - JOUR")
13
+ expect(ris[1]).to eq("T1 - Automated quantitative histology reveals vascular morphodynamics during Arabidopsis hypocotyl secondary growth")
14
+ expect(ris[2]).to eq("T2 - eLife")
15
+ expect(ris[3]).to eq("AU - Sankar, Martial")
16
+ expect(ris[8]).to eq("DO - 10.7554/elife.01567")
17
+ expect(ris[9]).to eq("UR - https://elifesciences.org/articles/01567")
18
+ expect(ris[10]).to start_with("AB - Among various advantages")
19
+ expect(ris[11]).to eq("PY - 2014")
20
+ expect(ris[12]).to eq("PB - eLife Sciences Publications, Ltd")
21
+ expect(ris[13]).to eq("VL - 3")
22
+ expect(ris[14]).to eq("SP - e01567")
23
+ expect(ris[15]).to eq("SN - 2050-084X")
24
+ expect(ris[16]).to eq("ER - ")
25
+ end
26
+
27
+ it "with pages" do
28
+ input = "https://doi.org/10.1155/2012/291294"
29
+ subject = Briard::Metadata.new(input: input, from: "crossref")
30
+ # expect(subject.valid?).to be true
31
+ ris = subject.ris.split("\r\n")
32
+ expect(ris[0]).to eq("TY - JOUR")
33
+ expect(ris[1]).to eq("T1 - Delineating a Retesting Zone Using Receiver Operating Characteristic Analysis on Serial QuantiFERON Tuberculosis Test Results in US Healthcare Workers")
34
+ expect(ris[2]).to eq("T2 - Pulmonary Medicine")
35
+ expect(ris[3]).to eq("AU - Thanassi, Wendy")
36
+ expect(ris[10]).to eq("DO - 10.1155/2012/291294")
37
+ expect(ris[11]).to eq("UR - http://www.hindawi.com/journals/pm/2012/291294/")
38
+ expect(ris[12]).to start_with("AB - . To find a statistically significant separation point for the QuantiFERON")
39
+ expect(ris[13]).to eq("PY - 2012")
40
+ expect(ris[14]).to eq("PB - Hindawi Limited")
41
+ expect(ris[15]).to eq("VL - 2012")
42
+ expect(ris[16]).to eq("SP - 1")
43
+ expect(ris[17]).to eq("EP - 7")
44
+ expect(ris[18]).to eq("SN - 2090-1844")
45
+ expect(ris[19]).to eq("ER - ")
46
+ end
47
+
48
+ it "alternate name" do
49
+ input = "https://doi.org/10.3205/ZMA001102"
50
+ subject = Briard::Metadata.new(input: input, from: "datacite")
51
+ expect(subject.valid?).to be true
52
+ ris = subject.ris.split("\r\n")
53
+ expect(ris[0]).to eq("TY - RPRT")
54
+ expect(ris[1]).to eq("T1 - Visions and reality: the idea of competence-oriented assessment for German medical students is not yet realised in licensing examinations")
55
+ expect(ris[2]).to eq("T2 - GMS Journal for Medical Education; 34(2):Doc25")
56
+ expect(ris[3]).to eq("AU - Huber-Lang, Markus")
57
+ expect(ris[9]).to eq("DO - 10.3205/zma001102")
58
+ expect(ris[10]).to eq("UR - http://www.egms.de/en/journals/zma/2017-34/zma001102.shtml")
59
+ expect(ris[11]).to start_with("AB - Objective: Competence orientation")
60
+ expect(ris[12]).to eq("KW - medical competence")
61
+ expect(ris[22]).to eq("PY - 2017")
62
+ expect(ris[23]).to eq("PB - German Medical Science GMS Publishing House")
63
+ expect(ris[24]).to eq("LA - en")
64
+ expect(ris[25]).to eq("SN - 2366-5017")
65
+ expect(ris[26]).to eq("ER - ")
66
+ end
67
+
68
+ it "Crossref DOI" do
69
+ input = fixture_path + "crossref.bib"
70
+ subject = Briard::Metadata.new(input: input, from: "bibtex")
71
+
72
+ ris = subject.ris.split("\r\n")
73
+ expect(ris[0]).to eq("TY - JOUR")
74
+ expect(ris[1]).to eq("T1 - Automated quantitative histology reveals vascular morphodynamics during Arabidopsis hypocotyl secondary growth")
75
+ expect(ris[2]).to eq("T2 - eLife")
76
+ expect(ris[3]).to eq("AU - Sankar, Martial")
77
+ expect(ris[8]).to eq("DO - 10.7554/elife.01567")
78
+ expect(ris[9]).to eq("UR - http://elifesciences.org/lookup/doi/10.7554/eLife.01567")
79
+ expect(ris[10]).to eq("AB - Among various advantages, their small size makes model organisms preferred subjects of investigation. Yet, even in model systems detailed analysis of numerous developmental processes at cellular level is severely hampered by their scale.")
80
+ expect(ris[11]).to eq("PY - 2014")
81
+ expect(ris[12]).to eq("PB - {eLife} Sciences Organisation, Ltd.")
82
+ expect(ris[13]).to eq("VL - 3")
83
+ expect(ris[14]).to eq("SN - 2050-084X")
84
+ expect(ris[15]).to eq("ER - ")
85
+ end
86
+
87
+ it "BlogPosting" do
88
+ input = "https://doi.org/10.5438/4K3M-NYVG"
89
+ subject = Briard::Metadata.new(input: input, from: "datacite")
90
+ expect(subject.valid?).to be true
91
+ ris = subject.ris.split("\r\n")
92
+ expect(ris[0]).to eq("TY - RPRT")
93
+ expect(ris[1]).to eq("T1 - Eating your own Dog Food")
94
+ expect(ris[2]).to eq("AU - Fenner, Martin")
95
+ expect(ris[3]).to eq("DO - 10.5438/4k3m-nyvg")
96
+ expect(ris[4]).to eq("UR - https://blog.datacite.org/eating-your-own-dog-food/")
97
+ expect(ris[5]).to eq("AB - Eating your own dog food is a slang term to describe that an organization should itself use the products and services it provides. For DataCite this means that we should use DOIs with appropriate metadata and strategies for long-term preservation for...")
98
+ expect(ris[6]).to eq("KW - datacite")
99
+ expect(ris[9]).to eq("KW - FOS: Computer and information sciences")
100
+ expect(ris[10]).to eq("KW - FOS: Computer and information sciences")
101
+ expect(ris[11]).to eq("PY - 2016")
102
+ expect(ris[12]).to eq("PB - DataCite")
103
+ expect(ris[13]).to eq("LA - en")
104
+ expect(ris[14]).to eq("SN - 10.5438/0000-00ss")
105
+ expect(ris[15]).to eq("ER - ")
106
+ end
107
+
108
+ it "BlogPosting Citeproc JSON" do
109
+ input = fixture_path + "citeproc.json"
110
+ subject = Briard::Metadata.new(input: input, from: "citeproc")
111
+ ris = subject.ris.split("\r\n")
112
+ expect(ris[0]).to eq("TY - GEN")
113
+ expect(ris[1]).to eq("T1 - Eating your own Dog Food")
114
+ expect(ris[2]).to eq("T2 - DataCite Blog")
115
+ expect(ris[3]).to eq("AU - Fenner, Martin")
116
+ expect(ris[4]).to eq("DO - 10.5438/4k3m-nyvg")
117
+ expect(ris[5]).to eq("UR - https://blog.datacite.org/eating-your-own-dog-food")
118
+ expect(ris[6]).to eq("AB - Eating your own dog food is a slang term to describe that an organization should itself use the products and services it provides. For DataCite this means that we should use DOIs with appropriate metadata and strategies for long-term preservation for...")
119
+ expect(ris[7]).to eq("KW - Phylogeny")
120
+ expect(ris[14]).to eq("PY - 2016")
121
+ expect(ris[15]).to eq("PB - DataCite")
122
+ expect(ris[16]).to eq("ER - ")
123
+ end
124
+
125
+ it "BlogPosting DataCite JSON" do
126
+ input = fixture_path + "datacite.json"
127
+ subject = Briard::Metadata.new(input: input, from: "datacite_json")
128
+ ris = subject.ris.split("\r\n")
129
+ expect(ris[0]).to eq("TY - RPRT")
130
+ expect(ris[1]).to eq("T1 - Eating your own Dog Food")
131
+ expect(ris[2]).to eq("AU - Fenner, Martin")
132
+ expect(ris[3]).to eq("DO - 10.5438/4k3m-nyvg")
133
+ expect(ris[4]).to eq("AB - Eating your own dog food is a slang term to describe that an organization should itself use the products and services it provides. For DataCite this means that we should use DOIs with appropriate metadata and strategies for long-term preservation for...")
134
+ expect(ris[5]).to eq("KW - datacite")
135
+ expect(ris[8]).to eq("PY - 2016")
136
+ expect(ris[9]).to eq("PB - DataCite")
137
+ expect(ris[10]).to eq("SN - 10.5438/0000-00ss")
138
+ expect(ris[11]).to eq("ER - ")
139
+ end
140
+
141
+ it "BlogPosting schema.org" do
142
+ input = "https://blog.datacite.org/eating-your-own-dog-food/"
143
+ subject = Briard::Metadata.new(input: input, from: "schema_org")
144
+ ris = subject.ris.split("\r\n")
145
+ expect(ris[0]).to eq("TY - GEN")
146
+ expect(ris[1]).to eq("T1 - Eating your own Dog Food")
147
+ expect(ris[2]).to eq("T2 - DataCite Blog")
148
+ expect(ris[3]).to eq("AU - Fenner, Martin")
149
+ expect(ris[4]).to eq("DO - 10.5438/4k3m-nyvg")
150
+ expect(ris[5]).to eq("UR - https://blog.datacite.org/eating-your-own-dog-food")
151
+ expect(ris[6]).to eq("AB - Eating your own dog food is a slang term to describe that an organization should itself use the products and services it provides. For DataCite this means that we should use DOIs with appropriate metadata and strategies for long-term preservation for...")
152
+ expect(ris[7]).to eq("KW - datacite")
153
+ expect(ris[11]).to eq("PY - 2016")
154
+ expect(ris[12]).to eq("PB - DataCite")
155
+ expect(ris[13]).to eq("SN - 10.5438/0000-00ss")
156
+ expect(ris[14]).to eq("ER - ")
157
+ end
158
+
159
+ it "Dataset" do
160
+ input = "10.5061/DRYAD.8515"
161
+ subject = Briard::Metadata.new(input: input, from: "datacite")
162
+ expect(subject.valid?).to be true
163
+ ris = subject.ris.split("\r\n")
164
+ expect(ris[0]).to eq("TY - DATA")
165
+ expect(ris[1]).to eq("T1 - Data from: A new malaria agent in African hominids.")
166
+ expect(ris[2]).to eq("AU - Ollomo, Benjamin")
167
+ expect(ris[10]).to eq("DO - 10.5061/dryad.8515")
168
+ expect(ris[11]).to eq("UR - http://datadryad.org/stash/dataset/doi:10.5061/dryad.8515")
169
+ expect(ris[13]).to eq("KW - Plasmodium")
170
+ expect(ris[18]).to eq("PB - Dryad")
171
+ expect(ris[19]).to eq("LA - en")
172
+ expect(ris[20]).to eq("ER - ")
173
+ end
174
+
175
+ it "maremma" do
176
+ input = "https://github.com/datacite/maremma"
177
+ subject = Briard::Metadata.new(input: input, from: "codemeta")
178
+ ris = subject.ris.split("\r\n")
179
+ expect(ris[0]).to eq("TY - COMP")
180
+ expect(ris[1]).to eq("T1 - Maremma: a Ruby library for simplified network calls")
181
+ expect(ris[2]).to eq("AU - Fenner, Martin")
182
+ expect(ris[3]).to eq("DO - 10.5438/qeg0-3gm3")
183
+ expect(ris[4]).to eq("UR - https://github.com/datacite/maremma")
184
+ expect(ris[5]).to eq("AB - Ruby utility library for network requests. Based on Faraday and Excon, provides a wrapper for XML/JSON parsing and error handling. All successful responses are returned as hash with key data, all errors in a JSONAPI-friendly hash with key errors.")
185
+ expect(ris[6]).to eq("KW - faraday")
186
+ expect(ris[9]).to eq("PY - 2017")
187
+ expect(ris[10]).to eq("PB - DataCite")
188
+ expect(ris[11]).to eq("ER - ")
189
+ end
190
+
191
+ it "keywords with subject scheme" do
192
+ input = "https://doi.org/10.1594/pangaea.721193"
193
+ subject = Briard::Metadata.new(input: input, from: "datacite")
194
+ ris = subject.ris.split("\r\n")
195
+ expect(ris.first).to eq("TY - DATA")
196
+ expect(ris).to include("T1 - Seawater carbonate chemistry and processes during experiments with Crassostrea gigas, 2007, supplement to: Kurihara, Haruko; Kato, Shoji; Ishimatsu, Atsushi (2007): Effects of increased seawater pCO2 on early development of the oyster Crassostrea gigas. Aquatic Biology, 1(1), 91-98")
197
+ expect(ris).to include("AU - Kurihara, Haruko")
198
+ expect(ris).to include("DO - 10.1594/pangaea.721193")
199
+ expect(ris).to include("UR - https://doi.pangaea.de/10.1594/PANGAEA.721193")
200
+ expect(ris).to include("KW - Animalia")
201
+ expect(ris).to include("KW - Bottles or small containers/Aquaria (<20 L)")
202
+ expect(ris).to include("PY - 2007")
203
+ expect(ris).to include("PB - PANGAEA - Data Publisher for Earth & Environmental Science")
204
+ expect(ris).to include("LA - en")
205
+ expect(ris.last).to eq("ER - ")
206
+ end
207
+ end
208
+ end