briard 2.0

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Files changed (730) hide show
  1. checksums.yaml +7 -0
  2. data/.github/workflows/build.yml +37 -0
  3. data/.github/workflows/changelog.yml +37 -0
  4. data/.github/workflows/release.yml +47 -0
  5. data/.gitignore +59 -0
  6. data/.rubocop.yml +658 -0
  7. data/CHANGELOG.md +1 -0
  8. data/CITATION +16 -0
  9. data/Gemfile +3 -0
  10. data/Gemfile.lock +226 -0
  11. data/LICENSE.md +21 -0
  12. data/README.md +1030 -0
  13. data/Rakefile +13 -0
  14. data/bin/briard +9 -0
  15. data/bolognese.gemspec +59 -0
  16. data/lib/briard/.env.example +3 -0
  17. data/lib/briard/array.rb +13 -0
  18. data/lib/briard/author_utils.rb +166 -0
  19. data/lib/briard/cli.rb +58 -0
  20. data/lib/briard/crossref_utils.rb +336 -0
  21. data/lib/briard/datacite_utils.rb +395 -0
  22. data/lib/briard/doi_utils.rb +65 -0
  23. data/lib/briard/metadata.rb +285 -0
  24. data/lib/briard/metadata_utils.rb +215 -0
  25. data/lib/briard/pubmed.rb +36 -0
  26. data/lib/briard/readers/bibtex_reader.rb +100 -0
  27. data/lib/briard/readers/citeproc_reader.rb +119 -0
  28. data/lib/briard/readers/codemeta_reader.rb +108 -0
  29. data/lib/briard/readers/crosscite_reader.rb +14 -0
  30. data/lib/briard/readers/crossref_reader.rb +368 -0
  31. data/lib/briard/readers/datacite_json_reader.rb +14 -0
  32. data/lib/briard/readers/datacite_reader.rb +341 -0
  33. data/lib/briard/readers/npm_reader.rb +115 -0
  34. data/lib/briard/readers/ris_reader.rb +114 -0
  35. data/lib/briard/readers/schema_org_reader.rb +263 -0
  36. data/lib/briard/string.rb +7 -0
  37. data/lib/briard/utils.rb +1369 -0
  38. data/lib/briard/version.rb +3 -0
  39. data/lib/briard/whitelist_scrubber.rb +47 -0
  40. data/lib/briard/writers/bibtex_writer.rb +32 -0
  41. data/lib/briard/writers/citation_writer.rb +14 -0
  42. data/lib/briard/writers/citeproc_writer.rb +11 -0
  43. data/lib/briard/writers/codemeta_writer.rb +29 -0
  44. data/lib/briard/writers/crosscite_writer.rb +11 -0
  45. data/lib/briard/writers/crossref_writer.rb +11 -0
  46. data/lib/briard/writers/csv_writer.rb +26 -0
  47. data/lib/briard/writers/datacite_json_writer.rb +11 -0
  48. data/lib/briard/writers/datacite_writer.rb +12 -0
  49. data/lib/briard/writers/jats_writer.rb +134 -0
  50. data/lib/briard/writers/rdf_xml_writer.rb +11 -0
  51. data/lib/briard/writers/ris_writer.rb +29 -0
  52. data/lib/briard/writers/schema_org_writer.rb +51 -0
  53. data/lib/briard/writers/turtle_writer.rb +11 -0
  54. data/lib/briard.rb +31 -0
  55. data/resources/2008/09/xsd.xsl +997 -0
  56. data/resources/crossref/AccessIndicators.xsd +47 -0
  57. data/resources/crossref/JATS-journalpublishing1-3d2-mathml3-elements.xsd +10130 -0
  58. data/resources/crossref/JATS-journalpublishing1-3d2-mathml3.xsd +48 -0
  59. data/resources/crossref/JATS-journalpublishing1-elements.xsd +8705 -0
  60. data/resources/crossref/JATS-journalpublishing1-mathml3-elements.xsd +8608 -0
  61. data/resources/crossref/JATS-journalpublishing1-mathml3.xsd +49 -0
  62. data/resources/crossref/JATS-journalpublishing1.xsd +6176 -0
  63. data/resources/crossref/clinicaltrials.xsd +61 -0
  64. data/resources/crossref/common5.3.1.xsd +1530 -0
  65. data/resources/crossref/crossref5.3.1.xsd +1949 -0
  66. data/resources/crossref/crossref_query_output3.0.xsd +1097 -0
  67. data/resources/crossref/fundref.xsd +49 -0
  68. data/resources/crossref/module-ali.xsd +39 -0
  69. data/resources/crossref/relations.xsd +444 -0
  70. data/resources/datacite-contributorType-v4.xsd +35 -0
  71. data/resources/datacite-dateType-v4.xsd +25 -0
  72. data/resources/datacite-descriptionType-v4.xsd +19 -0
  73. data/resources/datacite-funderIdentifierType-v4.xsd +15 -0
  74. data/resources/datacite-nameType-v4.xsd +10 -0
  75. data/resources/datacite-relatedIdentifierType-v4.xsd +34 -0
  76. data/resources/datacite-relationType-v4.xsd +49 -0
  77. data/resources/datacite-resourceType-v4.xsd +28 -0
  78. data/resources/datacite-titleType-v4.xsd +14 -0
  79. data/resources/kernel-2.1/include/datacite-contributorType-v1.1.xsd +22 -0
  80. data/resources/kernel-2.1/include/datacite-contributorType-v2.xsd +3 -0
  81. data/resources/kernel-2.1/include/datacite-dateType-v1.1.xsd +31 -0
  82. data/resources/kernel-2.1/include/datacite-dateType-v2.xsd +3 -0
  83. data/resources/kernel-2.1/include/datacite-descriptionType-v1.1.xsd +14 -0
  84. data/resources/kernel-2.1/include/datacite-descriptionType-v2.xsd +3 -0
  85. data/resources/kernel-2.1/include/datacite-relatedIdentifierType-v1.1.xsd +24 -0
  86. data/resources/kernel-2.1/include/datacite-relatedIdentifierType-v2.xsd +3 -0
  87. data/resources/kernel-2.1/include/datacite-relationType-v1.1.xsd +29 -0
  88. data/resources/kernel-2.1/include/datacite-relationType-v2.xsd +3 -0
  89. data/resources/kernel-2.1/include/datacite-resourceType-v1.1.xsd +22 -0
  90. data/resources/kernel-2.1/include/datacite-resourceType-v2.xsd +3 -0
  91. data/resources/kernel-2.1/include/datacite-titleType-v1.1.xsd +11 -0
  92. data/resources/kernel-2.1/include/datacite-titleType-v2.xsd +3 -0
  93. data/resources/kernel-2.1/metadata.xsd +315 -0
  94. data/resources/kernel-2.2/include/datacite-contributorType-v2.xsd +29 -0
  95. data/resources/kernel-2.2/include/datacite-dateType-v2.xsd +21 -0
  96. data/resources/kernel-2.2/include/datacite-descriptionType-v2.xsd +15 -0
  97. data/resources/kernel-2.2/include/datacite-relatedIdentifierType-v2.xsd +25 -0
  98. data/resources/kernel-2.2/include/datacite-relationType-v2.xsd +29 -0
  99. data/resources/kernel-2.2/include/datacite-resourceType-v2.xsd +23 -0
  100. data/resources/kernel-2.2/include/datacite-titleType-v2.xsd +10 -0
  101. data/resources/kernel-2.2/metadata.xsd +316 -0
  102. data/resources/kernel-3/include/datacite-contributorType-v3.1.xsd +35 -0
  103. data/resources/kernel-3/include/datacite-dateType-v3.xsd +21 -0
  104. data/resources/kernel-3/include/datacite-descriptionType-v3.xsd +17 -0
  105. data/resources/kernel-3/include/datacite-relatedIdentifierType-v3.1.xsd +30 -0
  106. data/resources/kernel-3/include/datacite-relationType-v3.1.xsd +38 -0
  107. data/resources/kernel-3/include/datacite-resourceType-v3.xsd +26 -0
  108. data/resources/kernel-3/include/datacite-titleType-v3.xsd +12 -0
  109. data/resources/kernel-3/include/xml.xsd +286 -0
  110. data/resources/kernel-3/metadata.xsd +380 -0
  111. data/resources/kernel-3.0/include/datacite-contributorType-v3.xsd +33 -0
  112. data/resources/kernel-3.0/include/datacite-dateType-v3.xsd +21 -0
  113. data/resources/kernel-3.0/include/datacite-descriptionType-v3.xsd +17 -0
  114. data/resources/kernel-3.0/include/datacite-relatedIdentifierType-v3.xsd +27 -0
  115. data/resources/kernel-3.0/include/datacite-relationType-v3.xsd +33 -0
  116. data/resources/kernel-3.0/include/datacite-resourceType-v3.xsd +26 -0
  117. data/resources/kernel-3.0/include/datacite-titleType-v3.xsd +12 -0
  118. data/resources/kernel-3.0/include/xml.xsd +286 -0
  119. data/resources/kernel-3.0/metadata.xsd +377 -0
  120. data/resources/kernel-3.1/include/datacite-contributorType-v3.1.xsd +35 -0
  121. data/resources/kernel-3.1/include/datacite-dateType-v3.xsd +21 -0
  122. data/resources/kernel-3.1/include/datacite-descriptionType-v3.xsd +17 -0
  123. data/resources/kernel-3.1/include/datacite-relatedIdentifierType-v3.1.xsd +30 -0
  124. data/resources/kernel-3.1/include/datacite-relationType-v3.1.xsd +38 -0
  125. data/resources/kernel-3.1/include/datacite-resourceType-v3.xsd +26 -0
  126. data/resources/kernel-3.1/include/datacite-titleType-v3.xsd +12 -0
  127. data/resources/kernel-3.1/include/xml.xsd +286 -0
  128. data/resources/kernel-3.1/metadata.xsd +380 -0
  129. data/resources/kernel-4/include/datacite-contributorType-v4.xsd +35 -0
  130. data/resources/kernel-4/include/datacite-dateType-v4.xsd +25 -0
  131. data/resources/kernel-4/include/datacite-descriptionType-v4.xsd +19 -0
  132. data/resources/kernel-4/include/datacite-funderIdentifierType-v4.xsd +16 -0
  133. data/resources/kernel-4/include/datacite-nameType-v4.xsd +10 -0
  134. data/resources/kernel-4/include/datacite-numberType-v4.xsd +12 -0
  135. data/resources/kernel-4/include/datacite-relatedIdentifierType-v4.xsd +34 -0
  136. data/resources/kernel-4/include/datacite-relationType-v4.xsd +51 -0
  137. data/resources/kernel-4/include/datacite-resourceType-v4.xsd +43 -0
  138. data/resources/kernel-4/include/datacite-titleType-v4.xsd +14 -0
  139. data/resources/kernel-4/include/xml.xsd +286 -0
  140. data/resources/kernel-4/metadata.xsd +707 -0
  141. data/resources/kernel-4.0/include/datacite-contributorType-v4.xsd +35 -0
  142. data/resources/kernel-4.0/include/datacite-dateType-v4.xsd +21 -0
  143. data/resources/kernel-4.0/include/datacite-descriptionType-v4.xsd +19 -0
  144. data/resources/kernel-4.0/include/datacite-funderIdentifierType-v4.xsd +15 -0
  145. data/resources/kernel-4.0/include/datacite-relatedIdentifierType-v4.xsd +32 -0
  146. data/resources/kernel-4.0/include/datacite-relationType-v4.xsd +39 -0
  147. data/resources/kernel-4.0/include/datacite-resourceType-v4.xsd +26 -0
  148. data/resources/kernel-4.0/include/datacite-titleType-v4.xsd +14 -0
  149. data/resources/kernel-4.0/include/xml.xsd +286 -0
  150. data/resources/kernel-4.0/metadata.xsd +470 -0
  151. data/resources/kernel-4.1/include/datacite-contributorType-v4.xsd +35 -0
  152. data/resources/kernel-4.1/include/datacite-dateType-v4.1.xsd +23 -0
  153. data/resources/kernel-4.1/include/datacite-descriptionType-v4.xsd +19 -0
  154. data/resources/kernel-4.1/include/datacite-funderIdentifierType-v4.xsd +15 -0
  155. data/resources/kernel-4.1/include/datacite-nameType-v4.1.xsd +10 -0
  156. data/resources/kernel-4.1/include/datacite-relatedIdentifierType-v4.xsd +32 -0
  157. data/resources/kernel-4.1/include/datacite-relationType-v4.1.xsd +46 -0
  158. data/resources/kernel-4.1/include/datacite-resourceType-v4.1.xsd +28 -0
  159. data/resources/kernel-4.1/include/datacite-titleType-v4.xsd +14 -0
  160. data/resources/kernel-4.1/include/xml.xsd +286 -0
  161. data/resources/kernel-4.1/metadata.xsd +483 -0
  162. data/resources/kernel-4.2/include/datacite-contributorType-v4.xsd +35 -0
  163. data/resources/kernel-4.2/include/datacite-dateType-v4.xsd +25 -0
  164. data/resources/kernel-4.2/include/datacite-descriptionType-v4.xsd +19 -0
  165. data/resources/kernel-4.2/include/datacite-funderIdentifierType-v4.xsd +15 -0
  166. data/resources/kernel-4.2/include/datacite-nameType-v4.xsd +10 -0
  167. data/resources/kernel-4.2/include/datacite-relatedIdentifierType-v4.xsd +34 -0
  168. data/resources/kernel-4.2/include/datacite-relationType-v4.xsd +49 -0
  169. data/resources/kernel-4.2/include/datacite-resourceType-v4.xsd +28 -0
  170. data/resources/kernel-4.2/include/datacite-titleType-v4.xsd +14 -0
  171. data/resources/kernel-4.2/include/xml.xsd +286 -0
  172. data/resources/kernel-4.2/metadata.xsd +479 -0
  173. data/resources/kernel-4.3/include/datacite-contributorType-v4.xsd +35 -0
  174. data/resources/kernel-4.3/include/datacite-dateType-v4.xsd +25 -0
  175. data/resources/kernel-4.3/include/datacite-descriptionType-v4.xsd +19 -0
  176. data/resources/kernel-4.3/include/datacite-funderIdentifierType-v4.xsd +16 -0
  177. data/resources/kernel-4.3/include/datacite-nameType-v4.xsd +10 -0
  178. data/resources/kernel-4.3/include/datacite-relatedIdentifierType-v4.xsd +34 -0
  179. data/resources/kernel-4.3/include/datacite-relationType-v4.xsd +49 -0
  180. data/resources/kernel-4.3/include/datacite-resourceType-v4.xsd +28 -0
  181. data/resources/kernel-4.3/include/datacite-titleType-v4.xsd +14 -0
  182. data/resources/kernel-4.3/include/xml.xsd +286 -0
  183. data/resources/kernel-4.3/metadata.xsd +515 -0
  184. data/resources/kernel-4.4/include/datacite-contributorType-v4.xsd +35 -0
  185. data/resources/kernel-4.4/include/datacite-dateType-v4.xsd +25 -0
  186. data/resources/kernel-4.4/include/datacite-descriptionType-v4.xsd +19 -0
  187. data/resources/kernel-4.4/include/datacite-funderIdentifierType-v4.xsd +16 -0
  188. data/resources/kernel-4.4/include/datacite-nameType-v4.xsd +10 -0
  189. data/resources/kernel-4.4/include/datacite-numberType-v4.xsd +12 -0
  190. data/resources/kernel-4.4/include/datacite-relatedIdentifierType-v4.xsd +34 -0
  191. data/resources/kernel-4.4/include/datacite-relationType-v4.xsd +51 -0
  192. data/resources/kernel-4.4/include/datacite-resourceType-v4.xsd +43 -0
  193. data/resources/kernel-4.4/include/datacite-titleType-v4.xsd +14 -0
  194. data/resources/kernel-4.4/include/xml.xsd +286 -0
  195. data/resources/kernel-4.4/metadata.xsd +707 -0
  196. data/resources/oecd/dfg-mappings.json +1866 -0
  197. data/resources/oecd/for-mappings.json +1099 -0
  198. data/resources/oecd/fos-mappings.json +198 -0
  199. data/resources/schema_org/jsonldcontext.json +7477 -0
  200. data/resources/spdx/licenses.json +5297 -0
  201. data/resources/xml.xsd +286 -0
  202. data/spec/array_spec.rb +22 -0
  203. data/spec/author_utils_spec.rb +193 -0
  204. data/spec/cli_spec.rb +226 -0
  205. data/spec/datacite_utils_spec.rb +178 -0
  206. data/spec/doi_utils_spec.rb +314 -0
  207. data/spec/find_from_format_spec.rb +114 -0
  208. data/spec/fixtures/aida.json +82 -0
  209. data/spec/fixtures/cgimp_package.json +18 -0
  210. data/spec/fixtures/cit_package.json +19 -0
  211. data/spec/fixtures/citeproc-no-author.json +26 -0
  212. data/spec/fixtures/citeproc-no-categories.json +21 -0
  213. data/spec/fixtures/citeproc.json +30 -0
  214. data/spec/fixtures/codemeta.json +86 -0
  215. data/spec/fixtures/codemeta_v2.json +86 -0
  216. data/spec/fixtures/crosscite.json +63 -0
  217. data/spec/fixtures/crossref.bib +14 -0
  218. data/spec/fixtures/crossref.ris +15 -0
  219. data/spec/fixtures/crossref.xml +606 -0
  220. data/spec/fixtures/datacite-empty-sizes.xml +57 -0
  221. data/spec/fixtures/datacite-example-affiliation.xml +114 -0
  222. data/spec/fixtures/datacite-example-ancientdates-v4.3.xml +29 -0
  223. data/spec/fixtures/datacite-example-complicated-tba.xml +56 -0
  224. data/spec/fixtures/datacite-example-complicated-v3.0.xml +48 -0
  225. data/spec/fixtures/datacite-example-complicated-v4.0.xml +54 -0
  226. data/spec/fixtures/datacite-example-complicated-v4.1.xml +57 -0
  227. data/spec/fixtures/datacite-example-dissertation-v4.4.xml +56 -0
  228. data/spec/fixtures/datacite-example-escaped-text.xml +56 -0
  229. data/spec/fixtures/datacite-example-full-v4.4.xml +114 -0
  230. data/spec/fixtures/datacite-example-geolocation-2.xml +141 -0
  231. data/spec/fixtures/datacite-example-geolocation.xml +66 -0
  232. data/spec/fixtures/datacite-example-polygon-v4.1.xml +163 -0
  233. data/spec/fixtures/datacite-example-relateditems.xml +61 -0
  234. data/spec/fixtures/datacite-example-xs-string.xml +28 -0
  235. data/spec/fixtures/datacite-formats-with-xs.xml +22 -0
  236. data/spec/fixtures/datacite-funderIdentifier.xml +78 -0
  237. data/spec/fixtures/datacite-geolocation-empty.xml +159 -0
  238. data/spec/fixtures/datacite-geolocationpolygons-multiple.xml +76 -0
  239. data/spec/fixtures/datacite-metadata-sample-complicated-v2.2.xml +52 -0
  240. data/spec/fixtures/datacite-multiple-language.xml +38 -0
  241. data/spec/fixtures/datacite-multiple-rights.xml +59 -0
  242. data/spec/fixtures/datacite-schema-2.2.xml +80 -0
  243. data/spec/fixtures/datacite-seriesinformation.xml +41 -0
  244. data/spec/fixtures/datacite-space-in-sizes.xml +52 -0
  245. data/spec/fixtures/datacite-xml-lang.xml +51 -0
  246. data/spec/fixtures/datacite.json +83 -0
  247. data/spec/fixtures/datacite.xml +40 -0
  248. data/spec/fixtures/datacite_dataset.xml +58 -0
  249. data/spec/fixtures/datacite_malformed_creator.xml +52 -0
  250. data/spec/fixtures/datacite_missing_creator.xml +33 -0
  251. data/spec/fixtures/datacite_schema_3.xml +58 -0
  252. data/spec/fixtures/datacite_software.json +21 -0
  253. data/spec/fixtures/datacite_software_missing_comma.json +18 -0
  254. data/spec/fixtures/datacite_software_overlapping_keys.json +18 -0
  255. data/spec/fixtures/datacite_software_version.json +74 -0
  256. data/spec/fixtures/edam_package.json +12 -0
  257. data/spec/fixtures/funding_reference.xml +53 -0
  258. data/spec/fixtures/gtex.xml +71 -0
  259. data/spec/fixtures/maremma/codemeta.json +36 -0
  260. data/spec/fixtures/nist.xml +35 -0
  261. data/spec/fixtures/ns0.xml +2 -0
  262. data/spec/fixtures/pure.bib +14 -0
  263. data/spec/fixtures/pure.ris +15 -0
  264. data/spec/fixtures/pure.xml +188 -0
  265. data/spec/fixtures/ris_bug.ris +9 -0
  266. data/spec/fixtures/schema_4.0.xml +140 -0
  267. data/spec/fixtures/schema_org.json +49 -0
  268. data/spec/fixtures/schema_org_front-matter.json +32 -0
  269. data/spec/fixtures/schema_org_geolocation.json +82 -0
  270. data/spec/fixtures/schema_org_geoshape.json +550 -0
  271. data/spec/fixtures/schema_org_gtex.json +75 -0
  272. data/spec/fixtures/schema_org_list.json +12623 -0
  273. data/spec/fixtures/schema_org_tdl_iodp_invalid_authors.json +25 -0
  274. data/spec/fixtures/schema_org_topmed.json +53 -0
  275. data/spec/fixtures/schema_org_type_as_array.json +41 -0
  276. data/spec/fixtures/vcr_cassettes/Briard_CLI/convert_from_id/crossref/default.yml +121 -0
  277. data/spec/fixtures/vcr_cassettes/Briard_CLI/convert_from_id/crossref/to_bibtex.yml +121 -0
  278. data/spec/fixtures/vcr_cassettes/Briard_CLI/convert_from_id/crossref/to_citation.yml +121 -0
  279. data/spec/fixtures/vcr_cassettes/Briard_CLI/convert_from_id/crossref/to_crossref.yml +121 -0
  280. data/spec/fixtures/vcr_cassettes/Briard_CLI/convert_from_id/crossref/to_datacite.yml +121 -0
  281. data/spec/fixtures/vcr_cassettes/Briard_CLI/convert_from_id/crossref/to_jats.yml +121 -0
  282. data/spec/fixtures/vcr_cassettes/Briard_CLI/convert_from_id/crossref/to_schema_org.yml +121 -0
  283. data/spec/fixtures/vcr_cassettes/Briard_CLI/convert_from_id/datacite/default.yml +110 -0
  284. data/spec/fixtures/vcr_cassettes/Briard_CLI/convert_from_id/datacite/to_bibtex.yml +110 -0
  285. data/spec/fixtures/vcr_cassettes/Briard_CLI/convert_from_id/datacite/to_citation.yml +110 -0
  286. data/spec/fixtures/vcr_cassettes/Briard_CLI/convert_from_id/datacite/to_datacite.yml +110 -0
  287. data/spec/fixtures/vcr_cassettes/Briard_CLI/convert_from_id/datacite/to_datacite_json.yml +110 -0
  288. data/spec/fixtures/vcr_cassettes/Briard_CLI/convert_from_id/datacite/to_jats.yml +110 -0
  289. data/spec/fixtures/vcr_cassettes/Briard_CLI/convert_from_id/datacite/to_schema_org.yml +110 -0
  290. data/spec/fixtures/vcr_cassettes/Briard_CLI/convert_from_id/schema_org/default.yml +117 -0
  291. data/spec/fixtures/vcr_cassettes/Briard_CLI/convert_from_id/schema_org/to_datacite.yml +117 -0
  292. data/spec/fixtures/vcr_cassettes/Briard_CLI/convert_from_id/schema_org/to_schema_org.yml +117 -0
  293. data/spec/fixtures/vcr_cassettes/Briard_CLI/find_from_format_by_id/crossref.yml +52 -0
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  667. data/spec/fixtures/vcr_cassettes/Briard_Metadata/write_metadata_as_jats_xml/with_data_citation_schema_org.yml +117 -0
  668. data/spec/fixtures/vcr_cassettes/Briard_Metadata/write_metadata_as_jats_xml/with_editor.yml +66 -0
  669. data/spec/fixtures/vcr_cassettes/Briard_Metadata/write_metadata_as_rdf_xml/BlogPosting.yml +61 -0
  670. data/spec/fixtures/vcr_cassettes/Briard_Metadata/write_metadata_as_rdf_xml/BlogPosting_schema_org.yml +117 -0
  671. data/spec/fixtures/vcr_cassettes/Briard_Metadata/write_metadata_as_rdf_xml/journal_article.yml +72 -0
  672. data/spec/fixtures/vcr_cassettes/Briard_Metadata/write_metadata_as_rdf_xml/maremma.yml +75 -0
  673. data/spec/fixtures/vcr_cassettes/Briard_Metadata/write_metadata_as_rdf_xml/with_pages.yml +69 -0
  674. data/spec/fixtures/vcr_cassettes/Briard_Metadata/write_metadata_as_ris/BlogPosting.yml +61 -0
  675. data/spec/fixtures/vcr_cassettes/Briard_Metadata/write_metadata_as_ris/BlogPosting_schema_org.yml +117 -0
  676. data/spec/fixtures/vcr_cassettes/Briard_Metadata/write_metadata_as_ris/Dataset.yml +61 -0
  677. data/spec/fixtures/vcr_cassettes/Briard_Metadata/write_metadata_as_ris/alternate_name.yml +61 -0
  678. data/spec/fixtures/vcr_cassettes/Briard_Metadata/write_metadata_as_ris/journal_article.yml +72 -0
  679. data/spec/fixtures/vcr_cassettes/Briard_Metadata/write_metadata_as_ris/keywords_with_subject_scheme.yml +61 -0
  680. data/spec/fixtures/vcr_cassettes/Briard_Metadata/write_metadata_as_ris/maremma.yml +75 -0
  681. data/spec/fixtures/vcr_cassettes/Briard_Metadata/write_metadata_as_ris/with_pages.yml +69 -0
  682. data/spec/fixtures/vcr_cassettes/Briard_Metadata/write_metadata_as_schema_org/Funding.yml +110 -0
  683. data/spec/fixtures/vcr_cassettes/Briard_Metadata/write_metadata_as_schema_org/Funding_OpenAIRE.yml +110 -0
  684. data/spec/fixtures/vcr_cassettes/Briard_Metadata/write_metadata_as_schema_org/Schema_org_JSON.yml +61 -0
  685. data/spec/fixtures/vcr_cassettes/Briard_Metadata/write_metadata_as_schema_org/Schema_org_JSON_Cyark.yml +110 -0
  686. data/spec/fixtures/vcr_cassettes/Briard_Metadata/write_metadata_as_schema_org/Schema_org_JSON_IsSupplementTo.yml +110 -0
  687. data/spec/fixtures/vcr_cassettes/Briard_Metadata/write_metadata_as_schema_org/Schema_org_JSON_isReferencedBy.yml +61 -0
  688. data/spec/fixtures/vcr_cassettes/Briard_Metadata/write_metadata_as_schema_org/alternate_identifiers.yml +61 -0
  689. data/spec/fixtures/vcr_cassettes/Briard_Metadata/write_metadata_as_schema_org/data_catalog.yml +61 -0
  690. data/spec/fixtures/vcr_cassettes/Briard_Metadata/write_metadata_as_schema_org/geo_location_box.yml +61 -0
  691. data/spec/fixtures/vcr_cassettes/Briard_Metadata/write_metadata_as_schema_org/interactive_resource_without_dates.yml +61 -0
  692. data/spec/fixtures/vcr_cassettes/Briard_Metadata/write_metadata_as_schema_org/journal_article.yml +72 -0
  693. data/spec/fixtures/vcr_cassettes/Briard_Metadata/write_metadata_as_schema_org/maremma_schema_org_JSON.yml +75 -0
  694. data/spec/fixtures/vcr_cassettes/Briard_Metadata/write_metadata_as_schema_org/series_information.yml +61 -0
  695. data/spec/fixtures/vcr_cassettes/Briard_Metadata/write_metadata_as_schema_org/subject_scheme.yml +61 -0
  696. data/spec/fixtures/vcr_cassettes/Briard_Metadata/write_metadata_as_schema_org/subject_scheme_multiple_keywords.yml +61 -0
  697. data/spec/fixtures/vcr_cassettes/Briard_Metadata/write_metadata_as_turtle/BlogPosting.yml +61 -0
  698. data/spec/fixtures/vcr_cassettes/Briard_Metadata/write_metadata_as_turtle/BlogPosting_schema_org.yml +117 -0
  699. data/spec/fixtures/vcr_cassettes/Briard_Metadata/write_metadata_as_turtle/Dataset.yml +61 -0
  700. data/spec/fixtures/vcr_cassettes/Briard_Metadata/write_metadata_as_turtle/journal_article.yml +72 -0
  701. data/spec/fixtures/vcr_cassettes/Briard_Metadata/write_metadata_as_turtle/with_pages.yml +69 -0
  702. data/spec/fixtures/vivli.xml +1 -0
  703. data/spec/metadata_spec.rb +165 -0
  704. data/spec/readers/bibtex_reader_spec.rb +63 -0
  705. data/spec/readers/citeproc_reader_spec.rb +61 -0
  706. data/spec/readers/codemeta_reader_spec.rb +138 -0
  707. data/spec/readers/crosscite_reader_spec.rb +41 -0
  708. data/spec/readers/crossref_reader_spec.rb +1117 -0
  709. data/spec/readers/datacite_json_reader_spec.rb +80 -0
  710. data/spec/readers/datacite_reader_spec.rb +1655 -0
  711. data/spec/readers/npm_reader_spec.rb +66 -0
  712. data/spec/readers/ris_reader_spec.rb +75 -0
  713. data/spec/readers/schema_org_reader_spec.rb +376 -0
  714. data/spec/spec_helper.rb +94 -0
  715. data/spec/utils_spec.rb +617 -0
  716. data/spec/writers/bibtex_writer_spec.rb +195 -0
  717. data/spec/writers/citation_writer_spec.rb +52 -0
  718. data/spec/writers/citeproc_writer_spec.rb +296 -0
  719. data/spec/writers/codemeta_writer_spec.rb +45 -0
  720. data/spec/writers/crosscite_writer_spec.rb +122 -0
  721. data/spec/writers/crossref_writer_spec.rb +88 -0
  722. data/spec/writers/csv_writer_spec.rb +94 -0
  723. data/spec/writers/datacite_json_writer_spec.rb +90 -0
  724. data/spec/writers/datacite_writer_spec.rb +428 -0
  725. data/spec/writers/jats_writer_spec.rb +193 -0
  726. data/spec/writers/rdf_xml_writer_spec.rb +86 -0
  727. data/spec/writers/ris_writer_spec.rb +208 -0
  728. data/spec/writers/schema_org_writer_spec.rb +369 -0
  729. data/spec/writers/turtle_writer_spec.rb +84 -0
  730. metadata +1347 -0
@@ -0,0 +1,1369 @@
1
+ # frozen_string_literal: true
2
+
3
+ module Briard
4
+ module Utils
5
+ NORMALIZED_LICENSES = {
6
+ "https://creativecommons.org/licenses/by/1.0" => "https://creativecommons.org/licenses/by/1.0/legalcode",
7
+ "https://creativecommons.org/licenses/by/2.0" => "https://creativecommons.org/licenses/by/2.0/legalcode",
8
+ "https://creativecommons.org/licenses/by/2.5" => "https://creativecommons.org/licenses/by/2.5/legalcode",
9
+ "https://creativecommons.org/licenses/by/3.0" => "https://creativecommons.org/licenses/by/3.0/legalcode",
10
+ "https://creativecommons.org/licenses/by/3.0/us" => "https://creativecommons.org/licenses/by/3.0/legalcode",
11
+ "https://creativecommons.org/licenses/by/4.0" => "https://creativecommons.org/licenses/by/4.0/legalcode",
12
+ "https://creativecommons.org/licenses/by-nc/1.0" => "https://creativecommons.org/licenses/by-nc/1.0/legalcode",
13
+ "https://creativecommons.org/licenses/by-nc/2.0" => "https://creativecommons.org/licenses/by-nc/2.0/legalcode",
14
+ "https://creativecommons.org/licenses/by-nc/2.5" => "https://creativecommons.org/licenses/by-nc/2.5/legalcode",
15
+ "https://creativecommons.org/licenses/by-nc/3.0" => "https://creativecommons.org/licenses/by-nc/3.0/legalcode",
16
+ "https://creativecommons.org/licenses/by-nc/4.0" => "https://creativecommons.org/licenses/by-nc/4.0/legalcode",
17
+ "https://creativecommons.org/licenses/by-nd-nc/1.0" => "https://creativecommons.org/licenses/by-nd-nc/1.0/legalcode",
18
+ "https://creativecommons.org/licenses/by-nd-nc/2.0" => "https://creativecommons.org/licenses/by-nd-nc/2.0/legalcode",
19
+ "https://creativecommons.org/licenses/by-nd-nc/2.5" => "https://creativecommons.org/licenses/by-nd-nc/2.5/legalcode",
20
+ "https://creativecommons.org/licenses/by-nd-nc/3.0" => "https://creativecommons.org/licenses/by-nd-nc/3.0/legalcode",
21
+ "https://creativecommons.org/licenses/by-nd-nc/4.0" => "https://creativecommons.org/licenses/by-nd-nc/4.0/legalcode",
22
+ "https://creativecommons.org/licenses/by-nc-sa/1.0" => "https://creativecommons.org/licenses/by-nc-sa/1.0/legalcode",
23
+ "https://creativecommons.org/licenses/by-nc-sa/2.0" => "https://creativecommons.org/licenses/by-nc-sa/2.0/legalcode",
24
+ "https://creativecommons.org/licenses/by-nc-sa/2.5" => "https://creativecommons.org/licenses/by-nc-sa/2.5/legalcode",
25
+ "https://creativecommons.org/licenses/by-nc-sa/3.0" => "https://creativecommons.org/licenses/by-nc-sa/3.0/legalcode",
26
+ "https://creativecommons.org/licenses/by-nc-sa/4.0" => "https://creativecommons.org/licenses/by-nc-sa/4.0/legalcode",
27
+ "https://creativecommons.org/licenses/by-nd/1.0" => "https://creativecommons.org/licenses/by-nd/1.0/legalcode",
28
+ "https://creativecommons.org/licenses/by-nd/2.0" => "https://creativecommons.org/licenses/by-nd/2.0/legalcode",
29
+ "https://creativecommons.org/licenses/by-nd/2.5" => "https://creativecommons.org/licenses/by-nd/2.5/legalcode",
30
+ "https://creativecommons.org/licenses/by-nd/3.0" => "https://creativecommons.org/licenses/by-nd/3.0/legalcode",
31
+ "https://creativecommons.org/licenses/by-nd/4.0" => "https://creativecommons.org/licenses/by-nd/2.0/legalcode",
32
+ "https://creativecommons.org/licenses/by-sa/1.0" => "https://creativecommons.org/licenses/by-sa/1.0/legalcode",
33
+ "https://creativecommons.org/licenses/by-sa/2.0" => "https://creativecommons.org/licenses/by-sa/2.0/legalcode",
34
+ "https://creativecommons.org/licenses/by-sa/2.5" => "https://creativecommons.org/licenses/by-sa/2.5/legalcode",
35
+ "https://creativecommons.org/licenses/by-sa/3.0" => "https://creativecommons.org/licenses/by-sa/3.0/legalcode",
36
+ "https://creativecommons.org/licenses/by-sa/4.0" => "https://creativecommons.org/licenses/by-sa/4.0/legalcode",
37
+ "https://creativecommons.org/licenses/by-nc-nd/1.0" => "https://creativecommons.org/licenses/by-nc-nd/1.0/legalcode",
38
+ "https://creativecommons.org/licenses/by-nc-nd/2.0" => "https://creativecommons.org/licenses/by-nc-nd/2.0/legalcode",
39
+ "https://creativecommons.org/licenses/by-nc-nd/2.5" => "https://creativecommons.org/licenses/by-nc-nd/2.5/legalcode",
40
+ "https://creativecommons.org/licenses/by-nc-nd/3.0" => "https://creativecommons.org/licenses/by-nc-nd/3.0/legalcode",
41
+ "https://creativecommons.org/licenses/by-nc-nd/4.0" => "https://creativecommons.org/licenses/by-nc-nd/4.0/legalcode",
42
+ "https://creativecommons.org/licenses/publicdomain" => "https://creativecommons.org/licenses/publicdomain/",
43
+ "https://creativecommons.org/publicdomain/zero/1.0" => "https://creativecommons.org/publicdomain/zero/1.0/legalcode",
44
+ }
45
+
46
+ DC_TO_SO_TRANSLATIONS = {
47
+ "Audiovisual" => "MediaObject",
48
+ "Book" => "Book",
49
+ "BookChapter" => "Chapter",
50
+ "Collection" => "Collection",
51
+ "ComputationalNotebook" => "SoftwareSourceCode",
52
+ "ConferencePaper" => "Article",
53
+ "ConferenceProceeding" => "Periodical",
54
+ "DataPaper" => "Article",
55
+ "Dataset" => "Dataset",
56
+ "Dissertation" => "Thesis",
57
+ "Event" => "Event",
58
+ "Image" => "ImageObject",
59
+ "InteractiveResource" => nil,
60
+ "Journal" => "Periodical",
61
+ "JournalArticle" => "ScholarlyArticle",
62
+ "Model" => nil,
63
+ "OutputManagementPlan" => nil,
64
+ "PeerReview" => "Review",
65
+ "PhysicalObject" => nil,
66
+ "Preprint" => nil,
67
+ "Report" => "Report",
68
+ "Service" => "Service",
69
+ "Software" => "SoftwareSourceCode",
70
+ "Sound" => "AudioObject",
71
+ "Standard" => nil,
72
+ "Text" => "ScholarlyArticle",
73
+ "Workflow" => nil,
74
+ "Other" => "CreativeWork",
75
+ # not part of DataCite schema, but used internally
76
+ "Periodical" => "Periodical",
77
+ "DataCatalog" => "DataCatalog"
78
+ }
79
+
80
+ DC_TO_CP_TRANSLATIONS = {
81
+ "Audiovisual" => "motion_picture",
82
+ "Book" => "book",
83
+ "BookChapter" => "chapter",
84
+ "Collection" => nil,
85
+ "ComputationalNotebook" => nil,
86
+ "ConferencePaper" => "paper_conference",
87
+ "ConferenceProceeding" => nil,
88
+ "DataPaper" => "report",
89
+ "Dataset" => "dataset",
90
+ "Dissertation" => nil,
91
+ "Event" => nil,
92
+ "Image" => "graphic",
93
+ "InteractiveResource" => nil,
94
+ "Journal" => nil,
95
+ "JournalArticle" => "article-journal",
96
+ "Model" => nil,
97
+ "OutputManagementPlan" => nil,
98
+ "PeerReview" => "review",
99
+ "PhysicalObject" => nil,
100
+ "Preprint" => nil,
101
+ "Report" => "report",
102
+ "Service" => nil,
103
+ "Sound" => "song",
104
+ "Standard" => nil,
105
+ "Text" => "report",
106
+ "Workflow" => nil,
107
+ "Other" => nil
108
+ }
109
+
110
+ CR_TO_CP_TRANSLATIONS = {
111
+ "Proceedings" => nil,
112
+ "ReferenceBook" => nil,
113
+ "JournalIssue" => nil,
114
+ "ProceedingsArticle" => "paper-conference",
115
+ "Other" => nil,
116
+ "Dissertation" => "thesis",
117
+ "Dataset" => "dataset",
118
+ "EditedBook" => "book",
119
+ "JournalArticle" => "article-journal",
120
+ "Journal" => nil,
121
+ "Report" => "report",
122
+ "BookSeries" => nil,
123
+ "ReportSeries" => nil,
124
+ "BookTrack" => nil,
125
+ "Standard" => nil,
126
+ "BookSection" => "chapter",
127
+ "BookPart" => nil,
128
+ "Book" => "book",
129
+ "BookChapter" => "chapter",
130
+ "StandardSeries" => nil,
131
+ "Monograph" => "book",
132
+ "Component" => nil,
133
+ "ReferenceEntry" => "entry-dictionary",
134
+ "JournalVolume" => nil,
135
+ "BookSet" => nil
136
+ }
137
+
138
+ CR_TO_SO_TRANSLATIONS = {
139
+ "Proceedings" => nil,
140
+ "ReferenceBook" => "Book",
141
+ "JournalIssue" => "PublicationIssue",
142
+ "ProceedingsArticle" => nil,
143
+ "Other" => "CreativeWork",
144
+ "Dissertation" => "Thesis",
145
+ "Dataset" => "Dataset",
146
+ "EditedBook" => "Book",
147
+ "JournalArticle" => "ScholarlyArticle",
148
+ "Journal" => nil,
149
+ "Report" => "Report",
150
+ "BookSeries" => nil,
151
+ "ReportSeries" => nil,
152
+ "BookTrack" => nil,
153
+ "Standard" => nil,
154
+ "BookSection" => nil,
155
+ "BookPart" => nil,
156
+ "Book" => "Book",
157
+ "BookChapter" => "Chapter",
158
+ "StandardSeries" => nil,
159
+ "Monograph" => "Book",
160
+ "Component" => "CreativeWork",
161
+ "ReferenceEntry" => nil,
162
+ "JournalVolume" => "PublicationVolume",
163
+ "BookSet" => nil,
164
+ "PostedContent" => "ScholarlyArticle",
165
+ "PeerReview" => "Review"
166
+ }
167
+
168
+ CR_TO_BIB_TRANSLATIONS = {
169
+ "Proceedings" => "proceedings",
170
+ "ReferenceBook" => "book",
171
+ "JournalIssue" => nil,
172
+ "ProceedingsArticle" => nil,
173
+ "Other" => nil,
174
+ "Dissertation" => "phdthesis",
175
+ "Dataset" => nil,
176
+ "EditedBook" => "book",
177
+ "JournalArticle" => "article",
178
+ "Journal" => nil,
179
+ "Report" => "techreport",
180
+ "BookSeries" => nil,
181
+ "ReportSeries" => nil,
182
+ "BookTrack" => nil,
183
+ "Standard" => nil,
184
+ "BookSection" => "inbook",
185
+ "BookPart" => nil,
186
+ "Book" => "book",
187
+ "BookChapter" => "inbook",
188
+ "StandardSeries" => nil,
189
+ "Monograph" => "book",
190
+ "Component" => nil,
191
+ "ReferenceEntry" => nil,
192
+ "JournalVolume" => nil,
193
+ "BookSet" => nil,
194
+ "PostedContent" => "article"
195
+ }
196
+
197
+ BIB_TO_CR_TRANSLATIONS = {
198
+ "proceedings" => "Proceedings",
199
+ "phdthesis" => "Dissertation",
200
+ "article" => "JournalArticle",
201
+ "book" => "Book",
202
+ "inbook" => "BookChapter"
203
+ }
204
+
205
+ CR_TO_JATS_TRANSLATIONS = {
206
+ "Proceedings" => "working-paper",
207
+ "ReferenceBook" => "book",
208
+ "JournalIssue" => "journal",
209
+ "ProceedingsArticle" => "working-paper",
210
+ "Other" => nil,
211
+ "Dissertation" => nil,
212
+ "Dataset" => "data",
213
+ "EditedBook" => "book",
214
+ "JournalArticle" => "journal",
215
+ "Journal" => "journal",
216
+ "Report" => "report",
217
+ "BookSeries" => "book",
218
+ "ReportSeries" => "report",
219
+ "BookTrack" => "book",
220
+ "Standard" => "standard",
221
+ "BookSection" => "chapter",
222
+ "BookPart" => "chapter",
223
+ "Book" => "book",
224
+ "BookChapter" => "chapter",
225
+ "StandardSeries" => "standard",
226
+ "Monograph" => "book",
227
+ "Component" => nil,
228
+ "ReferenceEntry" => nil,
229
+ "JournalVolume" => "journal",
230
+ "BookSet" => "book"
231
+ }
232
+
233
+ CR_TO_DC_TRANSLATIONS = {
234
+ "Proceedings" => nil,
235
+ "ReferenceBook" => nil,
236
+ "JournalIssue" => "Text",
237
+ "ProceedingsArticle" => "ConferencePaper",
238
+ "Other" => "Other",
239
+ "Dissertation" => "Dissertation",
240
+ "Dataset" => "Dataset",
241
+ "EditedBook" => "Book",
242
+ "JournalArticle" => "JournalArticle",
243
+ "Journal" => "Journal",
244
+ "Report" => "Report",
245
+ "BookSeries" => nil,
246
+ "ReportSeries" => nil,
247
+ "BookTrack" => nil,
248
+ "Standard" => "Standard",
249
+ "BookSection" => "BookChapter",
250
+ "BookPart" => nil,
251
+ "Book" => "Book",
252
+ "BookChapter" => "BookChapter",
253
+ "SaComponent" => "Text",
254
+ "StandardSeries" => "Standard",
255
+ "Monograph" => "book",
256
+ "Component" => nil,
257
+ "ReferenceEntry" => nil,
258
+ "JournalVolume" => nil,
259
+ "BookSet" => nil,
260
+ "PostedContent" => "Preprint",
261
+ "PeerReview" => "PeerReview"
262
+ }
263
+
264
+ SO_TO_DC_TRANSLATIONS = {
265
+ "Article" => "Text",
266
+ "AudioObject" => "Sound",
267
+ "Blog" => "Text",
268
+ "BlogPosting" => "Preprint",
269
+ "Book" => "Book",
270
+ "Chapter" => "BookChapter",
271
+ "Collection" => "Collection",
272
+ "DataCatalog" => "Dataset",
273
+ "Dataset" => "Dataset",
274
+ "Event" => "Event",
275
+ "ImageObject" => "Image",
276
+ "Movie" => "Audiovisual",
277
+ "PublicationIssue" => "Text",
278
+ "Report" => "Report",
279
+ "ScholarlyArticle" => "Text",
280
+ "Thesis" => "Text",
281
+ "Service" => "Service",
282
+ "Review" => "PeerReview",
283
+ "SoftwareSourceCode" => "Software",
284
+ "VideoObject" => "Audiovisual",
285
+ "WebPage" => "Text",
286
+ "WebSite" => "Text"
287
+ }
288
+
289
+ SO_TO_JATS_TRANSLATIONS = {
290
+ "Article" => "journal",
291
+ "AudioObject" => nil,
292
+ "Blog" => nil,
293
+ "BlogPosting" => nil,
294
+ "Book" => "book",
295
+ "Collection" => nil,
296
+ "CreativeWork" => nil,
297
+ "DataCatalog" => "data",
298
+ "Dataset" => "data",
299
+ "Event" => nil,
300
+ "ImageObject" => nil,
301
+ "Movie" => nil,
302
+ "PublicationIssue" => "journal",
303
+ "ScholarlyArticle" => "journal",
304
+ "Service" => nil,
305
+ "SoftwareSourceCode" => "software",
306
+ "VideoObject" => nil,
307
+ "WebPage" => nil,
308
+ "WebSite" => "website"
309
+ }
310
+
311
+ SO_TO_CP_TRANSLATIONS = {
312
+ "Article" => "",
313
+ "AudioObject" => "song",
314
+ "Blog" => "report",
315
+ "BlogPosting" => "post-weblog",
316
+ "Collection" => nil,
317
+ "CreativeWork" => nil,
318
+ "DataCatalog" => "dataset",
319
+ "Dataset" => "dataset",
320
+ "Event" => nil,
321
+ "ImageObject" => "graphic",
322
+ "Movie" => "motion_picture",
323
+ "PublicationIssue" => nil,
324
+ "Report" => "report",
325
+ "ScholarlyArticle" => "article-journal",
326
+ "Service" => nil,
327
+ "Thesis" => "thesis",
328
+ "VideoObject" => "broadcast",
329
+ "WebPage" => "webpage",
330
+ "WebSite" => "webpage"
331
+ }
332
+
333
+ SO_TO_RIS_TRANSLATIONS = {
334
+ "Article" => nil,
335
+ "AudioObject" => nil,
336
+ "Blog" => nil,
337
+ "BlogPosting" => "BLOG",
338
+ "Collection" => nil,
339
+ "CreativeWork" => "GEN",
340
+ "DataCatalog" => "CTLG",
341
+ "Dataset" => "DATA",
342
+ "Event" => nil,
343
+ "ImageObject" => "FIGURE",
344
+ "Movie" => "MPCT",
345
+ "Report" => "RPRT",
346
+ "PublicationIssue" => nil,
347
+ "ScholarlyArticle" => "JOUR",
348
+ "Service" => nil,
349
+ "SoftwareSourceCode" => "COMP",
350
+ "VideoObject" => "VIDEO",
351
+ "WebPage" => "ELEC",
352
+ "WebSite" => nil
353
+ }
354
+
355
+ CR_TO_RIS_TRANSLATIONS = {
356
+ "Proceedings" => "CONF",
357
+ "ReferenceBook" => "BOOK",
358
+ "JournalIssue" => nil,
359
+ "ProceedingsArticle" => "CPAPER",
360
+ "Other" => "GEN",
361
+ "Dissertation" => "THES",
362
+ "Dataset" => "DATA",
363
+ "EditedBook" => "BOOK",
364
+ "JournalArticle" => "JOUR",
365
+ "Journal" => nil,
366
+ "Report" => "RPRT",
367
+ "BookSeries" => nil,
368
+ "ReportSeries" => nil,
369
+ "BookTrack" => nil,
370
+ "Standard" => "STAND",
371
+ "BookSection" => "CHAP",
372
+ "BookPart" => "CHAP",
373
+ "Book" => "BOOK",
374
+ "BookChapter" => "CHAP",
375
+ "StandardSeries" => nil,
376
+ "Monograph" => "BOOK",
377
+ "Component" => nil,
378
+ "ReferenceEntry" => "DICT",
379
+ "JournalVolume" => nil,
380
+ "BookSet" => nil
381
+ }
382
+
383
+ DC_TO_RIS_TRANSLATIONS = {
384
+ "Audiovisual" => "MPCT",
385
+ "Book" => "BOOK",
386
+ "BookChapter" => "CHAP",
387
+ "Collection" => nil,
388
+ "ComputationalNotebook" => "COMP",
389
+ "ConferencePaper" => "CPAPER",
390
+ "ConferenceProceeding" => "CONF",
391
+ "DataPaper" => nil,
392
+ "Dataset" => "DATA",
393
+ "Dissertation" => "THES",
394
+ "Event" => nil,
395
+ "Image" => "FIGURE",
396
+ "InteractiveResource" => nil,
397
+ "Journal" => nil,
398
+ "JournalArticle" => "JOUR",
399
+ "Model" => nil,
400
+ "OutputManagementPlan" => nil,
401
+ "PeerReview" => nil,
402
+ "PhysicalObject" => nil,
403
+ "Preprint" => nil,
404
+ "Report" => "RRPT",
405
+ "Service" => nil,
406
+ "Software" => "COMP",
407
+ "Sound" => "SOUND",
408
+ "Standard" => nil,
409
+ "Text" => "RPRT",
410
+ "Workflow" => nil,
411
+ "Other" => nil
412
+ }
413
+
414
+ RIS_TO_DC_TRANSLATIONS = {
415
+ "BLOG" => "Text",
416
+ "GEN" => "Text",
417
+ "CTLG" => "Collection",
418
+ "DATA" => "Dataset",
419
+ "FIGURE" => "Image",
420
+ "THES" => "Dissertation",
421
+ "MPCT" => "Audiovisual",
422
+ "JOUR" => "JournalArticle",
423
+ "COMP" => "Software",
424
+ "VIDEO" => "Audiovisual",
425
+ "ELEC" => "Text"
426
+ }
427
+
428
+ BIB_TO_DC_TRANSLATIONS = {
429
+ "article" => "JournalArticle",
430
+ "book" => "Book",
431
+ "inbook" => "BookChapter",
432
+ "inproceedings" => nil,
433
+ "manual" => nil,
434
+ "misc" => "Other",
435
+ "phdthesis" => "Dissertation",
436
+ "proceedings" => "ConferenceProceeding",
437
+ "techreport" => "Report",
438
+ "unpublished" => nil
439
+ }
440
+
441
+ CP_TO_DC_TRANSLATIONS = {
442
+ "song" => "Audiovisual",
443
+ "post-weblog" => "Text",
444
+ "dataset" => "Dataset",
445
+ "graphic" => "Image",
446
+ "motion_picture" => "Audiovisual",
447
+ "article-journal" => "JournalArticle",
448
+ "broadcast" => "Audiovisual",
449
+ "webpage" => "Text"
450
+ }
451
+
452
+ SO_TO_BIB_TRANSLATIONS = {
453
+ "Article" => "article",
454
+ "AudioObject" => "misc",
455
+ "Thesis" => "phdthesis",
456
+ "Blog" => "misc",
457
+ "BlogPosting" => "article",
458
+ "Collection" => "misc",
459
+ "CreativeWork" => "misc",
460
+ "DataCatalog" => "misc",
461
+ "Dataset" => "misc",
462
+ "Event" => "misc",
463
+ "ImageObject" => "misc",
464
+ "Movie" => "misc",
465
+ "PublicationIssue" => "misc",
466
+ "ScholarlyArticle" => "article",
467
+ "Service" => "misc",
468
+ "SoftwareSourceCode" => "misc",
469
+ "VideoObject" => "misc",
470
+ "WebPage" => "misc",
471
+ "WebSite" => "misc"
472
+ }
473
+
474
+ UNKNOWN_INFORMATION = {
475
+ ":unac" => "temporarily inaccessible",
476
+ ":unal" => "unallowed, suppressed intentionally",
477
+ ":unap" => "not applicable, makes no sense",
478
+ ":unas" => "value unassigned (e.g., Untitled)",
479
+ ":unav" => "value unavailable, possibly unknown",
480
+ ":unkn" => "known to be unknown (e.g., Anonymous, Inconnue)",
481
+ ":none" => "never had a value, never will",
482
+ ":null" => "explicitly and meaningfully empty",
483
+ ":tba" => "to be assigned or announced later",
484
+ ":etal" => "too numerous to list (et alia)"
485
+ }
486
+
487
+ def find_from_format(id: nil, string: nil, ext: nil, filename: nil)
488
+ if id.present?
489
+ find_from_format_by_id(id)
490
+ elsif ext.present?
491
+ find_from_format_by_filename(filename) || find_from_format_by_ext(string, ext: ext)
492
+ elsif string.present?
493
+ find_from_format_by_string(string)
494
+ else
495
+ "datacite"
496
+ end
497
+ end
498
+
499
+ def find_from_format_by_id(id)
500
+ id = normalize_id(id)
501
+
502
+ if /\A(?:(http|https):\/(\/)?(dx\.)?(doi.org|handle.stage.datacite.org)\/)?(doi:)?(10\.\d{4,5}\/.+)\z/.match(id)
503
+ ra = get_doi_ra(id)
504
+ %w(DataCite Crossref mEDRA KISTI JaLC OP).include?(ra) ? ra.downcase : nil
505
+ elsif /\A(?:(http|https):\/(\/)?orcid\.org\/)?(\d{4}-\d{4}-\d{4}-\d{3}[0-9X]+)\z/.match(id)
506
+ "orcid"
507
+ elsif /\A(http|https):\/(\/)?github\.com\/(.+)\/package.json\z/.match(id)
508
+ "npm"
509
+ elsif /\A(http|https):\/(\/)?github\.com\/(.+)\z/.match(id)
510
+ "codemeta"
511
+ else
512
+ "schema_org"
513
+ end
514
+ end
515
+
516
+ def find_from_format_by_filename(filename)
517
+ if filename == "package.json"
518
+ "npm"
519
+ end
520
+ end
521
+
522
+ def find_from_format_by_ext(string, options={})
523
+ if options[:ext] == ".bib"
524
+ "bibtex"
525
+ elsif options[:ext] == ".ris"
526
+ "ris"
527
+ elsif options[:ext] == ".xml" && Maremma.from_xml(string).to_h.dig("crossref_result", "query_result", "body", "query", "doi_record", "crossref")
528
+ "crossref"
529
+ elsif options[:ext] == ".xml" && Nokogiri::XML(string, nil, 'UTF-8', &:noblanks).collect_namespaces.find { |k, v| v.start_with?("http://datacite.org/schema/kernel") }
530
+ "datacite"
531
+ elsif options[:ext] == ".json" && Maremma.from_json(string).to_h.dig("@context").to_s.start_with?("http://schema.org", "https://schema.org")
532
+ "schema_org"
533
+ elsif options[:ext] == ".json" && Maremma.from_json(string).to_h.dig("@context") == ("https://raw.githubusercontent.com/codemeta/codemeta/master/codemeta.jsonld")
534
+ "codemeta"
535
+ elsif options[:ext] == ".json" && Maremma.from_json(string).to_h.dig("schemaVersion").to_s.start_with?("http://datacite.org/schema/kernel")
536
+ "datacite_json"
537
+ elsif options[:ext] == ".json" && Maremma.from_json(string).to_h.dig("types") && Maremma.from_json(string).to_h.dig("publication_year").present?
538
+ "crosscite"
539
+ elsif options[:ext] == ".json" && Maremma.from_json(string).to_h.dig("issued", "date-parts").present?
540
+ "citeproc"
541
+ end
542
+ end
543
+
544
+ def find_from_format_by_string(string)
545
+ if Maremma.from_xml(string).to_h.dig("crossref_result", "query_result", "body", "query", "doi_record", "crossref").present?
546
+ "crossref"
547
+ elsif Nokogiri::XML(string, nil, 'UTF-8', &:noblanks).collect_namespaces.find { |k, v| v.start_with?("http://datacite.org/schema/kernel") }
548
+ "datacite"
549
+ elsif Maremma.from_json(string).to_h.dig("@context").to_s.start_with?("http://schema.org", "https://schema.org")
550
+ "schema_org"
551
+ elsif Maremma.from_json(string).to_h.dig("@context") == ("https://raw.githubusercontent.com/codemeta/codemeta/master/codemeta.jsonld")
552
+ "codemeta"
553
+ elsif Maremma.from_json(string).to_h.dig("schema-version").to_s.start_with?("http://datacite.org/schema/kernel")
554
+ "datacite_json"
555
+ elsif Maremma.from_json(string).to_h.dig("types").present? && Maremma.from_json(string).to_h.dig("publication_year").present?
556
+ "crosscite"
557
+ elsif Maremma.from_json(string).to_h.dig("issued", "date-parts").present?
558
+ "citeproc"
559
+ elsif string.start_with?("TY - ")
560
+ "ris"
561
+ elsif BibTeX.parse(string).first
562
+ "bibtex"
563
+ end
564
+ rescue BibTeX::ParseError => error
565
+ nil
566
+ end
567
+
568
+ def orcid_from_url(url)
569
+ Array(/\A:(http|https):\/\/orcid\.org\/(.+)/.match(url)).last
570
+ end
571
+
572
+ def orcid_as_url(orcid)
573
+ "https://orcid.org/#{orcid}" if orcid.present?
574
+ end
575
+
576
+ def validate_orcid(orcid)
577
+ orcid = Array(/\A(?:(?:http|https):\/\/(?:(?:www|sandbox)?\.)?orcid\.org\/)?(\d{4}[[:space:]-]\d{4}[[:space:]-]\d{4}[[:space:]-]\d{3}[0-9X]+)\z/.match(orcid)).last
578
+ orcid.gsub(/[[:space:]]/, "-") if orcid.present?
579
+ end
580
+
581
+ def validate_orcid_scheme(orcid_scheme)
582
+ Array(/\A(http|https):\/\/(www\.)?(orcid\.org)/.match(orcid_scheme)).last
583
+ end
584
+
585
+ def validate_url(str)
586
+ if /\A(?:(http|https):\/\/(dx\.)?doi.org\/)?(doi:)?(10\.\d{4,5}\/.+)\z/.match(str)
587
+ "DOI"
588
+ elsif /\A(http|https):\/\//.match(str)
589
+ "URL"
590
+ elsif /\A(ISSN|eISSN) (\d{4}-\d{3}[0-9X]+)\z/.match(str)
591
+ "ISSN"
592
+ end
593
+ end
594
+
595
+ def parse_attributes(element, options={})
596
+ content = options[:content] || "__content__"
597
+
598
+ if element.is_a?(String) && options[:content].nil?
599
+ CGI.unescapeHTML(element)
600
+ elsif element.is_a?(Hash)
601
+ element.fetch( CGI.unescapeHTML(content), nil)
602
+ elsif element.is_a?(Array)
603
+ a = element.map { |e| e.is_a?(Hash) ? e.fetch(CGI.unescapeHTML(content), nil) : e }.uniq
604
+ a = options[:first] ? a.first : a.unwrap
605
+ else
606
+ nil
607
+ end
608
+ end
609
+
610
+ def normalize_id(id, options={})
611
+ return nil unless id.present?
612
+
613
+ # check for valid DOI
614
+ doi = normalize_doi(id, options)
615
+ return doi if doi.present?
616
+
617
+ # check for valid HTTP uri
618
+ uri = Addressable::URI.parse(id)
619
+ return nil unless uri && uri.host && %w(http https).include?(uri.scheme)
620
+
621
+ # clean up URL
622
+ PostRank::URI.clean(id)
623
+ rescue Addressable::URI::InvalidURIError
624
+ nil
625
+ end
626
+
627
+ def normalize_url(id, options={})
628
+ return nil unless id.present?
629
+
630
+ # handle info URIs
631
+ return id if id.to_s.start_with?("info")
632
+
633
+ # check for valid HTTP uri
634
+ uri = Addressable::URI.parse(id)
635
+
636
+ return nil unless uri && uri.host && %w(http https ftp).include?(uri.scheme)
637
+
638
+ # optionally turn into https URL
639
+ uri.scheme = "https" if options[:https]
640
+
641
+ # clean up URL
642
+ uri.path = PostRank::URI.clean(uri.path)
643
+
644
+ uri.to_s
645
+ rescue Addressable::URI::InvalidURIError
646
+ nil
647
+ end
648
+
649
+ def normalize_cc_url(id)
650
+ id = normalize_url(id, https: true)
651
+ NORMALIZED_LICENSES.fetch(id, id)
652
+ end
653
+
654
+ def normalize_orcid(orcid)
655
+ orcid = validate_orcid(orcid)
656
+ return nil unless orcid.present?
657
+
658
+ # turn ORCID ID into URL
659
+ "https://orcid.org/" + Addressable::URI.encode(orcid)
660
+ end
661
+
662
+ def normalize_ids(ids: nil, relation_type: nil)
663
+ Array.wrap(ids).select { |idx| idx["@id"].present? }.map do |idx|
664
+ id = normalize_id(idx["@id"])
665
+ related_identifier_type = doi_from_url(id).present? ? "DOI" : "URL"
666
+ id = doi_from_url(id) || id
667
+
668
+ { "relatedIdentifier" => id,
669
+ "relationType" => relation_type,
670
+ "relatedIdentifierType" => related_identifier_type,
671
+ "resourceTypeGeneral" => Metadata::SO_TO_DC_TRANSLATIONS[idx["@type"]] }.compact
672
+ end.unwrap
673
+ end
674
+
675
+ # pick electronic issn if there are multiple
676
+ # format issn as xxxx-xxxx
677
+ def normalize_issn(input, options={})
678
+ content = options[:content] || "__content__"
679
+
680
+ issn = if input.blank?
681
+ nil
682
+ elsif input.is_a?(String) && options[:content].nil?
683
+ input
684
+ elsif input.is_a?(Hash)
685
+ input.fetch(content, nil)
686
+ elsif input.is_a?(Array)
687
+ a = input.find { |a| a["media_type"] == "electronic" } || input.first
688
+ a.fetch(content, nil)
689
+ end
690
+
691
+ case issn.to_s.length
692
+ when 9
693
+ issn
694
+ when 8
695
+ issn[0..3] + "-" + issn[4..7]
696
+ else
697
+ nil
698
+ end
699
+ end
700
+
701
+ # find Creative Commons or OSI license in licenses array, normalize url and name
702
+ def normalize_licenses(licenses)
703
+ standard_licenses = Array.wrap(licenses).map { |l| URI.parse(l["url"]) }.select { |li| li.host && li.host[/(creativecommons.org|opensource.org)$/] }
704
+ return licenses unless standard_licenses.present?
705
+
706
+ # use HTTPS
707
+ uri.scheme = "https"
708
+
709
+ # use host name without subdomain
710
+ uri.host = Array(/(creativecommons.org|opensource.org)/.match uri.host).last
711
+
712
+ # normalize URLs
713
+ if uri.host == "creativecommons.org"
714
+ uri.path = uri.path.split('/')[0..-2].join("/") if uri.path.split('/').last == "legalcode"
715
+ uri.path << '/' unless uri.path.end_with?('/')
716
+ else
717
+ uri.path = uri.path.gsub(/(-license|\.php|\.html)/, '')
718
+ uri.path = uri.path.sub(/(mit|afl|apl|osl|gpl|ecl)/) { |match| match.upcase }
719
+ uri.path = uri.path.sub(/(artistic|apache)/) { |match| match.titleize }
720
+ uri.path = uri.path.sub(/([^0-9\-]+)(-)?([1-9])?(\.)?([0-9])?$/) do
721
+ m = Regexp.last_match
722
+ text = m[1]
723
+
724
+ if m[3].present?
725
+ version = [m[3], m[5].presence || "0"].join(".")
726
+ [text, version].join("-")
727
+ else
728
+ text
729
+ end
730
+ end
731
+ end
732
+
733
+ uri.to_s
734
+ rescue URI::InvalidURIError
735
+ nil
736
+ end
737
+
738
+ def to_datacite_json(element, options={})
739
+ a = Array.wrap(element).map do |e|
740
+ e.inject({}) {|h, (k,v)| h[k.dasherize] = v; h }
741
+ end
742
+ options[:first] ? a.unwrap : a.presence
743
+ end
744
+
745
+ def from_datacite_json(element)
746
+ Array.wrap(element).map do |e|
747
+ e.inject({}) {|h, (k,v)| h[k.underscore] = v; h }
748
+ end
749
+ end
750
+
751
+ def to_schema_org(element)
752
+ mapping = { "type" => "@type", "id" => "@id", "title" => "name" }
753
+
754
+ map_hash_keys(element: element, mapping: mapping)
755
+ end
756
+
757
+ def to_schema_org_creators(element)
758
+ element = Array.wrap(element).map do |c|
759
+ c["affiliation"] = Array.wrap(c["affiliation"]).map do |a|
760
+ if a.is_a?(String)
761
+ name = a
762
+ affiliation_identifier = nil
763
+ else
764
+ name = a["name"]
765
+ affiliation_identifier = a["affiliationIdentifier"]
766
+ end
767
+
768
+ {
769
+ "@type" => "Organization",
770
+ "@id" => affiliation_identifier,
771
+ "name" => name }.compact
772
+ end.unwrap
773
+ c["@type"] = c["nameType"].present? ? c["nameType"][0..-3] : nil
774
+ c["@id"] = Array.wrap(c["nameIdentifiers"]).first.to_h.fetch("nameIdentifier", nil)
775
+ c["name"] = c["familyName"].present? ? [c["givenName"], c["familyName"]].join(" ") : c["name"]
776
+ c.except("nameIdentifiers", "nameType").compact
777
+ end.unwrap
778
+ end
779
+
780
+ def to_schema_org_contributors(element)
781
+ element = Array.wrap(element).map do |c|
782
+ c["affiliation"] = Array.wrap(c["affiliation"]).map do |a|
783
+ if a.is_a?(String)
784
+ name = a
785
+ affiliation_identifier = nil
786
+ else
787
+ name = a["name"]
788
+ affiliation_identifier = a["affiliationIdentifier"]
789
+ end
790
+
791
+ {
792
+ "@type" => "Organization",
793
+ "@id" => affiliation_identifier,
794
+ "name" => name }.compact
795
+ end.unwrap
796
+ c["@type"] = c["nameType"].present? ? c["nameType"][0..-3] : nil
797
+ c["@id"] = Array.wrap(c["nameIdentifiers"]).first.to_h.fetch("nameIdentifier", nil)
798
+ c["name"] = c["familyName"].present? ? [c["givenName"], c["familyName"]].join(" ") : c["name"]
799
+ c.except("nameIdentifiers", "nameType").compact
800
+ end.unwrap
801
+ end
802
+
803
+ def to_schema_org_container(element, options={})
804
+ return nil unless (element.is_a?(Hash) || (element.nil? && options[:container_title].present?))
805
+
806
+ {
807
+ "@id" => element["identifier"],
808
+ "@type" => (options[:type] == "Dataset") ? "DataCatalog" : "Periodical",
809
+ "name" => element["title"] || options[:container_title] }.compact
810
+ end
811
+
812
+ def to_schema_org_identifiers(element, options={})
813
+ Array.wrap(element).map do |ai|
814
+ {
815
+ "@type" => "PropertyValue",
816
+ "propertyID" => ai["identifierType"],
817
+ "value" => ai["identifier"] }
818
+ end.unwrap
819
+ end
820
+
821
+ def to_schema_org_relation(related_identifiers: nil, relation_type: nil)
822
+ return nil unless related_identifiers.present? && relation_type.present?
823
+
824
+ relation_type = relation_type == "References" ? ["References", "Cites", "Documents"] : [relation_type]
825
+
826
+ Array.wrap(related_identifiers).select { |ri| relation_type.include?(ri["relationType"]) }.map do |r|
827
+ if r["relatedIdentifierType"] == "ISSN" && r["relationType"] == "IsPartOf"
828
+ {
829
+ "@type" => "Periodical",
830
+ "issn" => r["relatedIdentifier"] }.compact
831
+ else
832
+ {
833
+ "@id" => normalize_id(r["relatedIdentifier"]),
834
+ "@type" => DC_TO_SO_TRANSLATIONS[r["resourceTypeGeneral"]] || "CreativeWork" }.compact
835
+ end
836
+ end.unwrap
837
+ end
838
+
839
+ def to_schema_org_funder(funding_references)
840
+ return nil unless funding_references.present?
841
+
842
+ Array.wrap(funding_references).map do |fr|
843
+ {
844
+ "@id" => fr["funderIdentifier"],
845
+ "@type" => "Organization",
846
+ "name" => fr["funderName"] }.compact
847
+ end.unwrap
848
+ end
849
+
850
+ def to_schema_org_spatial_coverage(geo_location)
851
+ return nil unless geo_location.present?
852
+
853
+ Array.wrap(geo_location).reduce([]) do |sum, gl|
854
+ if gl.fetch("geoLocationPoint", nil)
855
+ sum << {
856
+ "@type" => "Place",
857
+ "geo" => {
858
+ "@type" => "GeoCoordinates",
859
+ "address" => gl["geoLocationPlace"],
860
+ "latitude" => gl.dig("geoLocationPoint", "pointLatitude"),
861
+ "longitude" => gl.dig("geoLocationPoint", "pointLongitude") }
862
+ }.compact
863
+ end
864
+
865
+ if gl.fetch("geoLocationBox", nil)
866
+ sum << {
867
+ "@type" => "Place",
868
+ "geo" => {
869
+ "@type" => "GeoShape",
870
+ "address" => gl["geoLocationPlace"],
871
+ "box" => [gl.dig("geoLocationBox", "southBoundLatitude"),
872
+ gl.dig("geoLocationBox", "westBoundLongitude"),
873
+ gl.dig("geoLocationBox", "northBoundLatitude"),
874
+ gl.dig("geoLocationBox", "eastBoundLongitude")].compact.join(" ").presence }.compact
875
+ }.compact
876
+ end
877
+
878
+ if gl.fetch("geoLocationPolygon", nil)
879
+ sum << {
880
+ "@type" => "Place",
881
+ "geo" => {
882
+ "@type" => "GeoShape",
883
+ "address" => gl["geoLocationPlace"],
884
+ "polygon" => Array.wrap(gl.dig("geoLocationPolygon")).map do |glp|
885
+ Array.wrap(glp).map do |glpp|
886
+ [glpp.dig("polygonPoint", "pointLongitude"), glpp.dig("polygonPoint", "pointLatitude")].compact
887
+ end.compact
888
+ end.compact.presence,
889
+ }
890
+ }
891
+ end
892
+
893
+ if gl.fetch("geoLocationPlace", nil) && !gl.fetch("geoLocationPoint", nil) && !gl.fetch("geoLocationBox", nil) && !gl.fetch("geoLocationPolygon", nil)
894
+ sum << {
895
+ "@type" => "Place",
896
+ "geo" => {
897
+ "@type" => "GeoCoordinates",
898
+ "address" => gl["geoLocationPlace"] }
899
+ }.compact
900
+ end
901
+
902
+ sum
903
+ end.unwrap
904
+ end
905
+
906
+ def from_schema_org(element)
907
+ mapping = { "@type" => "type", "@id" => "id" }
908
+
909
+ map_hash_keys(element: element, mapping: mapping)
910
+ end
911
+
912
+ def from_schema_org_creators(element)
913
+ element = Array.wrap(element).map do |c|
914
+ if c["affiliation"].is_a?(String)
915
+ c["affiliation"] = { "name" => c["affiliation"] }
916
+ affiliation_identifier_scheme = nil
917
+ scheme_uri = nil
918
+ elsif c.dig("affiliation", "@id").to_s.starts_with?("https://ror.org")
919
+ affiliation_identifier_scheme = "ROR"
920
+ scheme_uri = "https://ror.org/"
921
+ elsif c.dig("affiliation", "@id").to_s.starts_with?("https://isni.org")
922
+ affiliation_identifier_scheme = "ISNI"
923
+ scheme_uri = "https://isni.org/isni/"
924
+ else
925
+ affiliation_identifier_scheme = nil
926
+ scheme_uri = nil
927
+ end
928
+
929
+ c["nameIdentifier"] = [{ "__content__" => c["@id"], "nameIdentifierScheme" => "ORCID", "schemeUri" => "https://orcid.org" }] if normalize_orcid(c["@id"])
930
+ c["@type"] = c["@type"].find { |t| %w(Person Organization).include?(t) } if c["@type"].is_a?(Array)
931
+ c["creatorName"] = { "nameType" => c["@type"].present? ? c["@type"].titleize + "al" : nil, "__content__" => c["name"] }.compact
932
+ c["affiliation"] = { "__content__" => c.dig("affiliation", "name"), "affiliationIdentifier" => c.dig("affiliation", "@id"), "affiliationIdentifierScheme" => affiliation_identifier_scheme, "schemeUri" => scheme_uri }.compact.presence
933
+ c.except("@id", "@type", "name").compact
934
+ end
935
+ end
936
+
937
+ def from_schema_org_contributors(element)
938
+ element = Array.wrap(element).map do |c|
939
+ if c["affiliation"].is_a?(String)
940
+ c["affiliation"] = { "name" => c["affiliation"] }
941
+ affiliation_identifier_scheme = nil
942
+ scheme_uri = nil
943
+ elsif c.dig("affiliation", "@id").to_s.starts_with?("https://ror.org")
944
+ affiliation_identifier_scheme = "ROR"
945
+ scheme_uri = "https://ror.org/"
946
+ elsif c.dig("affiliation", "@id").to_s.starts_with?("https://isni.org")
947
+ affiliation_identifier_scheme = "ISNI"
948
+ scheme_uri = "https://isni.org/isni/"
949
+ else
950
+ affiliation_identifier_scheme = nil
951
+ scheme_uri = nil
952
+ end
953
+
954
+ c["nameIdentifier"] = [{ "__content__" => c["@id"], "nameIdentifierScheme" => "ORCID", "schemeUri" => "https://orcid.org" }] if normalize_orcid(c["@id"])
955
+ c["contributorName"] = { "nameType" => c["@type"].present? ? c["@type"].titleize + "al" : nil, "__content__" => c["name"] }.compact
956
+ c["affiliation"] = { "__content__" => c.dig("affiliation", "name"), "affiliationIdentifier" => c.dig("affiliation", "@id"), "affiliationIdentifierScheme" => affiliation_identifier_scheme, "schemeUri" => scheme_uri }.compact.presence
957
+ c.except("@id", "@type", "name").compact
958
+ end
959
+ end
960
+
961
+ def map_hash_keys(element: nil, mapping: nil)
962
+ Array.wrap(element).map do |a|
963
+ a.map {|k, v| [mapping.fetch(k, k), v] }.reduce({}) do |hsh, (k, v)|
964
+ if v.is_a?(Hash)
965
+ hsh[k] = to_schema_org(v)
966
+ hsh
967
+ else
968
+ hsh[k] = v
969
+ hsh
970
+ end
971
+ end
972
+ end.unwrap
973
+ end
974
+
975
+ def to_identifier(identifier)
976
+ {
977
+ "@type" => "PropertyValue",
978
+ "propertyID" => identifier["relatedIdentifierType"],
979
+ "value" => identifier["relatedIdentifier"] }
980
+ end
981
+
982
+ def from_citeproc(element)
983
+ Array.wrap(element).map do |a|
984
+ if a["literal"].present?
985
+ a["@type"] = "Organization"
986
+ a["name"] = a["literal"]
987
+ else
988
+ a["@type"] = "Person"
989
+ a["name"] = [a["given"], a["family"]].compact.join(" ")
990
+ end
991
+ a["givenName"] = a["given"]
992
+ a["familyName"] = a["family"]
993
+ a.except("given", "family", "literal").compact
994
+ end.unwrap
995
+ end
996
+
997
+ def to_citeproc(element)
998
+ Array.wrap(element).map do |a|
999
+ a["family"] = a["familyName"]
1000
+ a["given"] = a["givenName"]
1001
+ a["literal"] = a["name"] unless a["familyName"].present?
1002
+ a.except("nameType", "type", "@type", "id", "@id", "name", "familyName", "givenName", "affiliation", "nameIdentifiers", "contributorType").compact
1003
+ end.presence
1004
+ end
1005
+
1006
+ def to_ris(element)
1007
+ Array.wrap(element).map do |a|
1008
+ if a["familyName"].present?
1009
+ [a["familyName"], a["givenName"]].join(", ")
1010
+ else
1011
+ a["name"]
1012
+ end
1013
+ end.unwrap
1014
+ end
1015
+
1016
+ def sanitize(text, options={})
1017
+ options[:tags] ||= Set.new(%w(strong em b i code pre sub sup br))
1018
+ content = options[:content] || "__content__"
1019
+ custom_scrubber = Briard::WhitelistScrubber.new(options)
1020
+
1021
+ if text.is_a?(String)
1022
+ # remove excessive internal whitespace with squish
1023
+ Loofah.scrub_fragment(text, custom_scrubber).to_s.squish
1024
+ elsif text.is_a?(Hash)
1025
+ sanitize(text.fetch(content, nil))
1026
+ elsif text.is_a?(Array)
1027
+ a = text.map { |e| e.is_a?(Hash) ? sanitize(e.fetch(content, nil)) : sanitize(e) }.uniq
1028
+ a = options[:first] ? a.first : a.unwrap
1029
+ else
1030
+ nil
1031
+ end
1032
+ end
1033
+
1034
+ def github_from_url(url)
1035
+ return {} unless /\Ahttps:\/\/github\.com\/(.+)(?:\/)?(.+)?(?:\/tree\/)?(.*)\z/.match(url)
1036
+ words = URI.parse(url).path[1..-1].split('/')
1037
+ path = words.length > 3 ? words[4...words.length].join("/") : nil
1038
+
1039
+ { owner: words[0],
1040
+ repo: words[1],
1041
+ release: words[3],
1042
+ path: path }.compact
1043
+ end
1044
+
1045
+ def github_repo_from_url(url)
1046
+ github_from_url(url).fetch(:repo, nil)
1047
+ end
1048
+
1049
+ def github_release_from_url(url)
1050
+ github_from_url(url).fetch(:release, nil)
1051
+ end
1052
+
1053
+ def github_owner_from_url(url)
1054
+ github_from_url(url).fetch(:owner, nil)
1055
+ end
1056
+
1057
+ def github_as_owner_url(url)
1058
+ github_hash = github_from_url(url)
1059
+ "https://github.com/#{github_hash[:owner]}" if github_hash[:owner].present?
1060
+ end
1061
+
1062
+ def github_as_repo_url(url)
1063
+ github_hash = github_from_url(url)
1064
+ "https://github.com/#{github_hash[:owner]}/#{github_hash[:repo]}" if github_hash[:repo].present?
1065
+ end
1066
+
1067
+ def github_as_release_url(url)
1068
+ github_hash = github_from_url(url)
1069
+ "https://github.com/#{github_hash[:owner]}/#{github_hash[:repo]}/tree/#{github_hash[:release]}" if github_hash[:release].present?
1070
+ end
1071
+
1072
+ def github_as_codemeta_url(url)
1073
+ github_hash = github_from_url(url)
1074
+
1075
+ if github_hash[:path].to_s.end_with?("codemeta.json")
1076
+ "https://raw.githubusercontent.com/#{github_hash[:owner]}/#{github_hash[:repo]}/#{github_hash[:release]}/#{github_hash[:path]}"
1077
+ elsif github_hash[:owner].present?
1078
+ "https://raw.githubusercontent.com/#{github_hash[:owner]}/#{github_hash[:repo]}/master/codemeta.json"
1079
+ end
1080
+ end
1081
+
1082
+ def get_date_parts(iso8601_time)
1083
+ return { 'date-parts' => [[]] } if iso8601_time.nil?
1084
+
1085
+ year = iso8601_time[0..3].to_i
1086
+ month = iso8601_time[5..6].to_i
1087
+ day = iso8601_time[8..9].to_i
1088
+ { 'date-parts' => [[year, month, day].reject { |part| part == 0 }] }
1089
+ rescue TypeError
1090
+ nil
1091
+ end
1092
+
1093
+ def get_date_from_date_parts(date_as_parts)
1094
+ date_parts = date_as_parts.fetch("date-parts", []).first
1095
+ year, month, day = date_parts[0], date_parts[1], date_parts[2]
1096
+ get_date_from_parts(year, month, day)
1097
+ end
1098
+
1099
+ def get_date_from_parts(year, month = nil, day = nil)
1100
+ [year.to_s.rjust(4, '0'), month.to_s.rjust(2, '0'), day.to_s.rjust(2, '0')].reject { |part| part == "00" }.join("-")
1101
+ end
1102
+
1103
+ def get_date_parts_from_parts(year, month = nil, day = nil)
1104
+ { 'date-parts' => [[year.to_i, month.to_i, day.to_i].reject { |part| part == 0 }] }
1105
+ end
1106
+
1107
+ def get_iso8601_date(iso8601_time)
1108
+ return nil if iso8601_time.nil?
1109
+
1110
+ iso8601_time[0..9]
1111
+ end
1112
+
1113
+ def get_year_month(iso8601_time)
1114
+ return [] if iso8601_time.nil?
1115
+
1116
+ year = iso8601_time[0..3]
1117
+ month = iso8601_time[5..6]
1118
+
1119
+ [year.to_i, month.to_i].reject { |part| part == 0 }
1120
+ end
1121
+
1122
+ def get_year_month_day(iso8601_time)
1123
+ return [] if iso8601_time.nil?
1124
+
1125
+ year = iso8601_time[0..3]
1126
+ month = iso8601_time[5..6]
1127
+ day = iso8601_time[8..9]
1128
+
1129
+ [year.to_i, month.to_i, day.to_i].reject { |part| part == 0 }
1130
+ end
1131
+
1132
+ # parsing of incomplete iso8601 timestamps such as 2015-04 is broken
1133
+ # in standard library
1134
+ # return nil if invalid iso8601 timestamp
1135
+ def get_datetime_from_iso8601(iso8601_time)
1136
+ ISO8601::DateTime.new(iso8601_time).to_time.utc
1137
+ rescue
1138
+ nil
1139
+ end
1140
+
1141
+ # strip milliseconds if there is a time, as it interferes with edtc parsing
1142
+ # keep dates unchanged
1143
+ def strip_milliseconds(iso8601_time)
1144
+ return iso8601_time.split(".").first + "Z" if iso8601_time.to_s.include? "."
1145
+
1146
+ return iso8601_time
1147
+ end
1148
+
1149
+ # iso8601 datetime without hyphens and colons, used by Crossref
1150
+ # return nil if invalid
1151
+ def get_datetime_from_time(time)
1152
+ DateTime.strptime(time.to_s, "%Y%m%d%H%M%S").strftime('%Y-%m-%dT%H:%M:%SZ')
1153
+ rescue ArgumentError
1154
+ nil
1155
+ end
1156
+
1157
+ def get_date(dates, date_type)
1158
+ dd = Array.wrap(dates).find { |d| d["dateType"] == date_type } || {}
1159
+ dd.fetch("date", nil)
1160
+ end
1161
+
1162
+ def get_contributor(contributor, contributor_type)
1163
+ contributor.select { |c| c["contributorType"] == contributor_type }
1164
+ end
1165
+
1166
+ def get_identifier(identifiers, identifier_type)
1167
+ id = Array.wrap(identifiers).find { |i| i["identifierType"] == identifier_type } || {}
1168
+ id.fetch("identifier", nil)
1169
+ end
1170
+
1171
+ def get_identifier_type(identifier_type)
1172
+ return nil unless identifier_type.present?
1173
+
1174
+ identifierTypes = {
1175
+ "ark" => "ARK",
1176
+ "arxiv" => "arXiv",
1177
+ "bibcode" => "bibcode",
1178
+ "doi" => "DOI",
1179
+ "ean13" => "EAN13",
1180
+ "eissn" => "EISSN",
1181
+ "handle" => "Handle",
1182
+ "igsn" => "IGSN",
1183
+ "isbn" => "ISBN",
1184
+ "issn" => "ISSN",
1185
+ "istc" => "ISTC",
1186
+ "lissn" => "LISSN",
1187
+ "lsid" => "LSID",
1188
+ "pmid" => "PMID",
1189
+ "purl" => "PURL",
1190
+ "upc" => "UPC",
1191
+ "url" => "URL",
1192
+ "urn" => "URN",
1193
+ "md5" => "md5",
1194
+ "minid" => "minid",
1195
+ "dataguid" => "dataguid"
1196
+ }
1197
+
1198
+ identifierTypes[identifier_type.downcase] || identifier_type
1199
+ end
1200
+
1201
+ def get_series_information(str)
1202
+ return {} unless str.present?
1203
+
1204
+ str = str.split(",").map(&:strip)
1205
+
1206
+ title = str.first
1207
+ volume_issue = str.length > 2 ? str[1].rpartition(/\(([^)]+)\)/) : nil
1208
+ volume = volume_issue.present? ? volume_issue[0].presence || volume_issue[2].presence : nil
1209
+ issue = volume_issue.present? ? volume_issue[1][1...-1].presence : nil
1210
+ pages = str.length > 1 ? str.last : nil
1211
+ first_page = pages.present? ? pages.split("-").map(&:strip)[0] : nil
1212
+ last_page = pages.present? ? pages.split("-").map(&:strip)[1] : nil
1213
+
1214
+ {
1215
+ "title" => title,
1216
+ "volume" => volume,
1217
+ "issue" => issue,
1218
+ "firstPage" => first_page,
1219
+ "lastPage" => last_page }.compact
1220
+ end
1221
+
1222
+ def jsonlint(json)
1223
+ return ["No JSON provided"] unless json.present?
1224
+
1225
+ error_array = []
1226
+ linter = JsonLint::Linter.new
1227
+ linter.send(:check_data, json, error_array)
1228
+ error_array
1229
+ end
1230
+
1231
+ def name_to_spdx(name)
1232
+ spdx = JSON.load(File.read(File.expand_path('../../../resources/spdx/licenses.json', __FILE__))).fetch("licenses")
1233
+ license = spdx.find { |l| l["name"] == name || l["licenseId"] == name || l["seeAlso"].first == normalize_cc_url(name) }
1234
+
1235
+ if license
1236
+ {
1237
+ "rights" => license["name"],
1238
+ "rightsUri" => license["seeAlso"].first,
1239
+ "rightsIdentifier" => license["licenseId"].downcase,
1240
+ "rightsIdentifierScheme" => "SPDX",
1241
+ "schemeUri" => "https://spdx.org/licenses/" }.compact
1242
+ else
1243
+ { "rights" => name }
1244
+ end
1245
+ end
1246
+
1247
+ def hsh_to_spdx(hsh)
1248
+ spdx = JSON.load(File.read(File.expand_path('../../../resources/spdx/licenses.json', __FILE__))).fetch("licenses")
1249
+ license = spdx.find { |l| l["licenseId"].casecmp?(hsh["rightsIdentifier"]) || l["seeAlso"].first == normalize_cc_url(hsh["rightsURI"]) || l["name"] == hsh["rights"] || l["seeAlso"].first == normalize_cc_url(hsh["rights"]) }
1250
+
1251
+ if license
1252
+ {
1253
+ "rights" => license["name"],
1254
+ "rightsUri" => license["seeAlso"].first,
1255
+ "rightsIdentifier" => license["licenseId"].downcase,
1256
+ "rightsIdentifierScheme" => "SPDX",
1257
+ "schemeUri" => "https://spdx.org/licenses/",
1258
+ "lang" => hsh["lang"] }.compact
1259
+ else
1260
+ {
1261
+ "rights" => hsh["__content__"] || hsh["rights"],
1262
+ "rightsUri" => hsh["rightsURI"] || hsh["rightsUri"],
1263
+ "rightsIdentifier" => hsh["rightsIdentifier"].present? ? hsh["rightsIdentifier"].downcase : nil,
1264
+ "rightsIdentifierScheme" => hsh["rightsIdentifierScheme"],
1265
+ "schemeUri" => hsh["schemeUri"],
1266
+ "lang" => hsh["lang"] }.compact
1267
+ end
1268
+ end
1269
+
1270
+ def name_to_fos(name)
1271
+ # first find subject in Fields of Science (OECD)
1272
+ fos = JSON.load(File.read(File.expand_path('../../../resources/oecd/fos-mappings.json', __FILE__))).fetch("fosFields")
1273
+
1274
+ subject = fos.find { |l| l["fosLabel"] == name || "FOS: " + l["fosLabel"] == name }
1275
+
1276
+ if subject
1277
+ return [{
1278
+ "subject" => sanitize(name) },
1279
+ {
1280
+ "subject" => "FOS: " + subject["fosLabel"],
1281
+ "subjectScheme" => "Fields of Science and Technology (FOS)",
1282
+ "schemeUri" => "http://www.oecd.org/science/inno/38235147.pdf"
1283
+ }]
1284
+ end
1285
+
1286
+ # if not found, look in Fields of Research (Australian and New Zealand Standard Research Classification)
1287
+ # and map to Fields of Science. Add an extra entry for the latter
1288
+ fores = JSON.load(File.read(File.expand_path('../../../resources/oecd/for-mappings.json', __FILE__)))
1289
+ for_fields = fores.fetch("forFields")
1290
+ for_disciplines = fores.fetch("forDisciplines")
1291
+
1292
+ subject = for_fields.find { |l| l["forLabel"] == name } ||
1293
+ for_disciplines.find { |l| l["forLabel"] == name }
1294
+
1295
+ if subject
1296
+ [{
1297
+ "subject" => sanitize(name) },
1298
+ {
1299
+ "subject" => "FOS: " + subject["fosLabel"],
1300
+ "subjectScheme" => "Fields of Science and Technology (FOS)",
1301
+ "schemeUri" => "http://www.oecd.org/science/inno/38235147.pdf"
1302
+ }]
1303
+ else
1304
+ [{ "subject" => sanitize(name) }]
1305
+ end
1306
+ end
1307
+
1308
+ def hsh_to_fos(hsh)
1309
+ # first find subject in Fields of Science (OECD)
1310
+ fos = JSON.load(File.read(File.expand_path('../../../resources/oecd/fos-mappings.json', __FILE__))).fetch("fosFields")
1311
+ subject = fos.find { |l| l["fosLabel"] == hsh["__content__"] || "FOS: " + l["fosLabel"] == hsh["__content__"] || l["fosLabel"] == hsh["subject"]}
1312
+
1313
+ if subject
1314
+ return [{
1315
+ "subject" => sanitize(hsh["__content__"] || hsh["subject"]),
1316
+ "subjectScheme" => hsh["subjectScheme"],
1317
+ "schemeUri" => hsh["schemeURI"] || hsh["schemeUri"],
1318
+ "valueUri" => hsh["valueURI"] || hsh["valueUri"],
1319
+ "classificationCode" => hsh["classificationCode"],
1320
+ "lang" => hsh["lang"] }.compact,
1321
+ {
1322
+ "subject" => "FOS: " + subject["fosLabel"],
1323
+ "subjectScheme" => "Fields of Science and Technology (FOS)",
1324
+ "schemeUri" => "http://www.oecd.org/science/inno/38235147.pdf" }.compact]
1325
+ end
1326
+
1327
+ # if not found, look in Fields of Research (Australian and New Zealand Standard Research Classification)
1328
+ # and map to Fields of Science. Add an extra entry for the latter
1329
+ fores = JSON.load(File.read(File.expand_path('../../../resources/oecd/for-mappings.json', __FILE__)))
1330
+ for_fields = fores.fetch("forFields")
1331
+ for_disciplines = fores.fetch("forDisciplines")
1332
+
1333
+ # try to extract forId
1334
+ if hsh["subjectScheme"] == "FOR"
1335
+ for_id = hsh["__content__"].to_s.split(" ").first || hsh["subject"].to_s.split(" ").first
1336
+ for_id = for_id.rjust(6, "0")
1337
+
1338
+ subject = for_fields.find { |l| l["forId"] == for_id } ||
1339
+ for_disciplines.find { |l| l["forId"] == for_id[0..3] }
1340
+ else
1341
+ subject = for_fields.find { |l| l["forLabel"] == hsh["__content__"] || l["forLabel"] == hsh["subject"] } ||
1342
+ for_disciplines.find { |l| l["forLabel"] == hsh["__content__"] || l["forLabel"] == hsh["subject"] }
1343
+ end
1344
+
1345
+ if subject
1346
+ [{
1347
+ "subject" => sanitize(hsh["__content__"] || hsh["subject"]),
1348
+ "subjectScheme" => hsh["subjectScheme"],
1349
+ "classificationCode" => hsh["classificationCode"],
1350
+ "schemeUri" => hsh["schemeURI"] || hsh["schemeUri"],
1351
+ "valueUri" => hsh["valueURI"] || hsh["valueUri"],
1352
+ "lang" => hsh["lang"] }.compact,
1353
+ {
1354
+ "subject" => "FOS: " + subject["fosLabel"],
1355
+ "subjectScheme" => "Fields of Science and Technology (FOS)",
1356
+ "schemeUri" => "http://www.oecd.org/science/inno/38235147.pdf"
1357
+ }]
1358
+ else
1359
+ [{
1360
+ "subject" => sanitize(hsh["__content__"] || hsh["subject"]),
1361
+ "subjectScheme" => hsh["subjectScheme"],
1362
+ "classificationCode" => hsh["classificationCode"],
1363
+ "schemeUri" => hsh["schemeURI"] || hsh["schemeUri"],
1364
+ "valueUri" => hsh["valueURI"] || hsh["valueUri"],
1365
+ "lang" => hsh["lang"] }.compact]
1366
+ end
1367
+ end
1368
+ end
1369
+ end