RubyGems - bolognese - Versions diffs - 2.2.0 → 2.6.1 - Mend

bolognese 2.2.0 → 2.6.1

This diff represents the content of publicly available package versions that have been released to one of the supported registries. The information contained in this diff is provided for informational purposes only and reflects changes between package versions as they appear in their respective public registries.

Files changed (585) hide show

data/spec/fixtures/vcr_cassettes/Bolognese_Metadata/get_crossref_metadata/multiple_titles_with_missing.yml DELETED Viewed

@@ -1,450 +0,0 @@
----
-http_interactions:
-- request:
-    method: get
-    uri: https://doi.org/ra/10.1186
-    body:
-      encoding: US-ASCII
-      string: ''
-    headers:
-      User-Agent:
-      - Mozilla/5.0 (compatible; Maremma/4.9.4; mailto:info@datacite.org)
-      Accept:
-      - text/html,application/json,application/xml;q=0.9, text/plain;q=0.8,image/png,*/*;q=0.5
-      Accept-Encoding:
-      - gzip,deflate
-  response:
-    status:
-      code: 200
-      message: ''
-    headers:
-      Date:
-      - Wed, 09 Jun 2021 12:56:47 GMT
-      Content-Type:
-      - application/json;charset=UTF-8
-      Connection:
-      - keep-alive
-      Content-Encoding:
-      - gzip
-      Cf-Cache-Status:
-      - DYNAMIC
-      Cf-Request-Id:
-      - 0a9271d87a0000c2ea42915000000001
-      Expect-Ct:
-      - max-age=604800, report-uri="https://report-uri.cloudflare.com/cdn-cgi/beacon/expect-ct"
-      Report-To:
-      - '{"endpoints":[{"url":"https:\/\/a.nel.cloudflare.com\/report\/v2?s=%2B1kHs%2BbupiT2MMPHH8D4ElgmD9zg22wkLPZYsyPy7af3ghvIX5sM5fvaOme%2BCsTuSNjlzxmF88m%2FQTEPqqsyn6fsBSX%2BoP4B6tv1oLHa7%2BVW5WTA2MB86dh9qIGNCaSS"}],"group":"cf-nel","max_age":604800}'
-      Nel:
-      - '{"report_to":"cf-nel","max_age":604800}'
-      Strict-Transport-Security:
-      - max-age=31536000; includeSubDomains; preload
-      Server:
-      - cloudflare
-      Cf-Ray:
-      - 65ca85a0cc59c2ea-FRA
-      Alt-Svc:
-      - h3-27=":443"; ma=86400, h3-28=":443"; ma=86400, h3-29=":443"; ma=86400, h3=":443";
-        ma=86400
-    body:
-      encoding: ASCII-8BIT
-      string: !binary |-
-        H4sIAAAAAAAAA4vmUlCoBmIFBSUXf08lKwUlQwM9Q0MLMyUdiGiQI0jQuSi/uLgoNU0JKFjLFQsA7Op2YDYAAAA=
-    http_version:
-  recorded_at: Wed, 09 Jun 2021 12:56:47 GMT
-- request:
-    method: get
-    uri: https://api.crossref.org/works/10.1186/1471-2164-7-187/transform/application/vnd.crossref.unixsd+xml
-    body:
-      encoding: US-ASCII
-      string: ''
-    headers:
-      User-Agent:
-      - Mozilla/5.0 (compatible; Maremma/4.9.4; mailto:info@datacite.org)
-      Accept:
-      - text/xml;charset=utf-8
-      Accept-Encoding:
-      - gzip,deflate
-  response:
-    status:
-      code: 200
-      message: OK
-    headers:
-      Link:
-      - <http://dx.doi.org/10.1186/1471-2164-7-187>; rel="canonical", <http://link.springer.com/content/pdf/10.1186/1471-2164-7-187.pdf>;
-        version="vor"; type="application/pdf"; rel="item", <http://link.springer.com/article/10.1186/1471-2164-7-187/fulltext.html>;
-        version="vor"; type="text/html"; rel="item", <http://link.springer.com/content/pdf/10.1186/1471-2164-7-187.pdf>;
-        version="vor"; type="application/pdf"; rel="item", <http://creativecommons.org/licenses/by/2.0>;
-        version="tdm"; rel="license"
-      Access-Control-Allow-Origin:
-      - "*"
-      Access-Control-Allow-Headers:
-      - X-Requested-With
-      Content-Length:
-      - '30740'
-      Server:
-      - http-kit
-      Date:
-      - Wed, 09 Jun 2021 12:56:48 GMT
-      X-Rate-Limit-Limit:
-      - '50'
-      X-Rate-Limit-Interval:
-      - 1s
-      Permissions-Policy:
-      - interest-cohort=()
-      Connection:
-      - close
-    body:
-      encoding: ASCII-8BIT
-      string: "<?xml version=\"1.0\" encoding=\"UTF-8\"?>\n<crossref_result xmlns=\"http://www.crossref.org/qrschema/3.0\"
-        version=\"3.0\" xmlns:xsi=\"http://www.w3.org/2001/XMLSchema-instance\" xsi:schemaLocation=\"http://www.crossref.org/qrschema/3.0
-        http://www.crossref.org/schemas/crossref_query_output3.0.xsd\">\r\n  <query_result>\r\n
-        \   <head>\r\n      <doi_batch_id>none</doi_batch_id>\r\n    </head>\r\n    <body>\r\n
-        \     <query status=\"resolved\">\r\n        <doi type=\"journal_article\">10.1186/1471-2164-7-187</doi>\r\n
-        \       <crm-item name=\"publisher-name\" type=\"string\">Springer Science
-        and Business Media LLC</crm-item>\r\n        <crm-item name=\"prefix-name\"
-        type=\"string\">Springer (Biomed Central Ltd.)</crm-item>\r\n        <crm-item
-        name=\"member-id\" type=\"number\">297</crm-item>\r\n        <crm-item name=\"citation-id\"
-        type=\"number\">22586616</crm-item>\r\n        <crm-item name=\"journal-id\"
-        type=\"number\">5911</crm-item>\r\n        <crm-item name=\"deposit-timestamp\"
-        type=\"number\">20200420160445553</crm-item>\r\n        <crm-item name=\"owner-prefix\"
-        type=\"string\">10.1186</crm-item>\r\n        <crm-item name=\"last-update\"
-        type=\"date\">2020-04-20T14:28:32Z</crm-item>\r\n        <crm-item name=\"created\"
-        type=\"date\">2006-07-25T18:14:51Z</crm-item>\r\n        <crm-item name=\"citedby-count\"
-        type=\"number\">144</crm-item>\r\n        <crm-item name=\"relation\" type=\"doi\"
-        claim=\"isReviewOf\">10.3410/f.1044091.494000</crm-item>\r\n        <crm-item
-        name=\"relation\" type=\"doi\" claim=\"isReviewOf\">10.3410/f.1044091.496329</crm-item>\r\n
-        \       <doi_record>\r\n          <crossref xmlns=\"http://www.crossref.org/xschema/1.1\"
-        xsi:schemaLocation=\"http://www.crossref.org/xschema/1.1 http://doi.crossref.org/schemas/unixref1.1.xsd\">\r\n
-        \           <journal>\r\n              <journal_metadata language=\"en\">\r\n
-        \               <full_title>BMC Genomics</full_title>\r\n                <abbrev_title>BMC
-        Genomics</abbrev_title>\r\n                <issn media_type=\"electronic\">1471-2164</issn>\r\n
-        \             </journal_metadata>\r\n              <journal_issue>\r\n                <publication_date
-        media_type=\"print\">\r\n                  <month>12</month>\r\n                  <year>2006</year>\r\n
-        \               </publication_date>\r\n                <journal_volume>\r\n
-        \                 <volume>7</volume>\r\n                </journal_volume>\r\n
-        \               <issue>1</issue>\r\n              </journal_issue>\r\n              <journal_article
-        publication_type=\"full_text\">\r\n                <titles>\r\n                  <title>Finding
-        function: evaluation methods for functional genomic data</title>\r\n                </titles>\r\n
-        \               <contributors>\r\n                  <person_name contributor_role=\"author\"
-        sequence=\"first\">\r\n                    <given_name>Chad L</given_name>\r\n
-        \                   <surname>Myers</surname>\r\n                  </person_name>\r\n
-        \                 <person_name contributor_role=\"author\" sequence=\"additional\">\r\n
-        \                   <given_name>Daniel R</given_name>\r\n                    <surname>Barrett</surname>\r\n
-        \                 </person_name>\r\n                  <person_name contributor_role=\"author\"
-        sequence=\"additional\">\r\n                    <given_name>Matthew A</given_name>\r\n
-        \                   <surname>Hibbs</surname>\r\n                  </person_name>\r\n
-        \                 <person_name contributor_role=\"author\" sequence=\"additional\">\r\n
-        \                   <given_name>Curtis</given_name>\r\n                    <surname>Huttenhower</surname>\r\n
-        \                 </person_name>\r\n                  <person_name contributor_role=\"author\"
-        sequence=\"additional\">\r\n                    <given_name>Olga G</given_name>\r\n
-        \                   <surname>Troyanskaya</surname>\r\n                  </person_name>\r\n
-        \               </contributors>\r\n                <publication_date media_type=\"online\">\r\n
-        \                 <month>7</month>\r\n                  <day>25</day>\r\n
-        \                 <year>2006</year>\r\n                </publication_date>\r\n
-        \               <publication_date media_type=\"print\">\r\n                  <month>12</month>\r\n
-        \                 <year>2006</year>\r\n                </publication_date>\r\n
-        \               <publisher_item>\r\n                  <item_number item_number_type=\"article-number\">187</item_number>\r\n
-        \                 <identifier id_type=\"pii\">570</identifier>\r\n                </publisher_item>\r\n
-        \               <ai:program xmlns:ai=\"http://www.crossref.org/AccessIndicators.xsd\"
-        name=\"AccessIndicators\">\r\n                  <ai:license_ref applies_to=\"tdm\">http://creativecommons.org/licenses/by/2.0</ai:license_ref>\r\n
-        \               </ai:program>\r\n                <doi_data>\r\n                  <doi>10.1186/1471-2164-7-187</doi>\r\n
-        \                 <timestamp>20200420160445553</timestamp>\r\n                  <resource
-        content_version=\"vor\">https://bmcgenomics.biomedcentral.com/articles/10.1186/1471-2164-7-187</resource>\r\n
-        \                 <collection property=\"crawler-based\">\r\n                    <item
-        crawler=\"iParadigms\">\r\n                      <resource mime_type=\"application/pdf\">http://link.springer.com/content/pdf/10.1186/1471-2164-7-187.pdf</resource>\r\n
-        \                   </item>\r\n                  </collection>\r\n                  <collection
-        property=\"text-mining\">\r\n                    <item>\r\n                      <resource
-        mime_type=\"application/pdf\">http://link.springer.com/content/pdf/10.1186/1471-2164-7-187.pdf</resource>\r\n
-        \                   </item>\r\n                    <item>\r\n                      <resource
-        mime_type=\"text/html\">http://link.springer.com/article/10.1186/1471-2164-7-187/fulltext.html</resource>\r\n
-        \                   </item>\r\n                  </collection>\r\n                </doi_data>\r\n
-        \               <citation_list>\r\n                  <citation key=\"570_CR1\">\r\n
-        \                   <author>Z Barutcuoglu</author>\r\n                    <cYear>2006</cYear>\r\n
-        \                   <volume_title>Bioinformatics</volume_title>\r\n                    <unstructured_citation>Barutcuoglu
-        Z, Schapire RE, Troyanskaya OG: Hierarchical multi-label prediction of gene
-        function. Bioinformatics. 2006</unstructured_citation>\r\n                  </citation>\r\n
-        \                 <citation key=\"570_CR2\">\r\n                    <journal_title>Bioinformatics</journal_title>\r\n
-        \                   <author>A Clare</author>\r\n                    <volume>19</volume>\r\n
-        \                   <issue>Suppl 2</issue>\r\n                    <first_page>II42</first_page>\r\n
-        \                   <cYear>2003</cYear>\r\n                    <doi>10.1093/bioinformatics/btg1058</doi>\r\n
-        \                   <unstructured_citation>Clare A, King RD: Predicting gene
-        function in Saccharomyces cerevisiae. Bioinformatics. 2003, 19 (Suppl 2):
-        II42-II49.</unstructured_citation>\r\n                  </citation>\r\n                  <citation
-        key=\"570_CR3\">\r\n                    <author>GR Lanckriet</author>\r\n
-        \                   <first_page>300</first_page>\r\n                    <cYear>2004</cYear>\r\n
-        \                   <volume_title>Pac Symp Biocomput</volume_title>\r\n                    <unstructured_citation>Lanckriet
-        GR, Deng M, Cristianini N, Jordan MI, Noble WS: Kernel-based data fusion and
-        its application to protein function prediction in yeast. Pac Symp Biocomput.
-        2004, 300-311.</unstructured_citation>\r\n                  </citation>\r\n
-        \                 <citation key=\"570_CR4\">\r\n                    <journal_title>J
-        Comput Biol</journal_title>\r\n                    <author>P Pavlidis</author>\r\n
-        \                   <volume>9</volume>\r\n                    <issue>2</issue>\r\n
-        \                   <first_page>401</first_page>\r\n                    <cYear>2002</cYear>\r\n
-        \                   <doi>10.1089/10665270252935539</doi>\r\n                    <unstructured_citation>Pavlidis
-        P, Weston J, Cai J, Noble WS: Learning gene functional classifications from
-        multiple data types. J Comput Biol. 2002, 9 (2): 401-411. 10.1089/10665270252935539.</unstructured_citation>\r\n
-        \                 </citation>\r\n                  <citation key=\"570_CR5\">\r\n
-        \                   <journal_title>Bioinformatics</journal_title>\r\n                    <author>A
-        Ben-Hur</author>\r\n                    <volume>21</volume>\r\n                    <issue>Suppl
-        1</issue>\r\n                    <first_page>i38</first_page>\r\n                    <cYear>2005</cYear>\r\n
-        \                   <doi>10.1093/bioinformatics/bti1016</doi>\r\n                    <unstructured_citation>Ben-Hur
-        A, Noble WS: Kernel methods for predicting protein-protein interactions. Bioinformatics.
-        2005, 21 (Suppl 1): i38-i46. 10.1093/bioinformatics/bti1016.</unstructured_citation>\r\n
-        \                 </citation>\r\n                  <citation key=\"570_CR6\">\r\n
-        \                   <journal_title>Science</journal_title>\r\n                    <author>R
-        Jansen</author>\r\n                    <volume>302</volume>\r\n                    <issue>5644</issue>\r\n
-        \                   <first_page>449</first_page>\r\n                    <cYear>2003</cYear>\r\n
-        \                   <doi>10.1126/science.1087361</doi>\r\n                    <unstructured_citation>Jansen
-        R, Yu H, Greenbaum D, Kluger Y, Krogan NJ, Chung S, Emili A, Snyder M, Greenblatt
-        JF, Gerstein M: A Bayesian networks approach for predicting protein-protein
-        interactions from genomic data. Science. 2003, 302 (5644): 449-453. 10.1126/science.1087361.</unstructured_citation>\r\n
-        \                 </citation>\r\n                  <citation key=\"570_CR7\">\r\n
-        \                   <journal_title>Science</journal_title>\r\n                    <author>I
-        Lee</author>\r\n                    <volume>306</volume>\r\n                    <issue>5701</issue>\r\n
-        \                   <first_page>1555</first_page>\r\n                    <cYear>2004</cYear>\r\n
-        \                   <doi>10.1126/science.1099511</doi>\r\n                    <unstructured_citation>Lee
-        I, Date SV, Adai AT, Marcotte EM: A probabilistic functional network of yeast
-        genes. Science. 2004, 306 (5701): 1555-1558. 10.1126/science.1099511.</unstructured_citation>\r\n
-        \                 </citation>\r\n                  <citation key=\"570_CR8\">\r\n
-        \                   <journal_title>BMC Bioinformatics</journal_title>\r\n
-        \                   <author>N Lin</author>\r\n                    <volume>5</volume>\r\n
-        \                   <issue>1</issue>\r\n                    <first_page>154</first_page>\r\n
-        \                   <cYear>2004</cYear>\r\n                    <doi>10.1186/1471-2105-5-154</doi>\r\n
-        \                   <unstructured_citation>Lin N, Wu B, Jansen R, Gerstein
-        M, Zhao H: Information assessment on predicting protein-protein interactions.
-        BMC Bioinformatics. 2004, 5 (1): 154-10.1186/1471-2105-5-154.</unstructured_citation>\r\n
-        \                 </citation>\r\n                  <citation key=\"570_CR9\">\r\n
-        \                   <journal_title>Proc Natl Acad Sci USA</journal_title>\r\n
-        \                   <author>OG Troyanskaya</author>\r\n                    <volume>100</volume>\r\n
-        \                   <issue>14</issue>\r\n                    <first_page>8348</first_page>\r\n
-        \                   <cYear>2003</cYear>\r\n                    <doi>10.1073/pnas.0832373100</doi>\r\n
-        \                   <unstructured_citation>Troyanskaya OG, Dolinski K, Owen
-        AB, Altman RB, Botstein D: A Bayesian framework for combining heterogeneous
-        data sources for gene function prediction (in Saccharomyces cerevisiae). Proc
-        Natl Acad Sci USA. 2003, 100 (14): 8348-8353. 10.1073/pnas.0832373100.</unstructured_citation>\r\n
-        \                 </citation>\r\n                  <citation key=\"570_CR10\">\r\n
-        \                   <journal_title>Trends Genet</journal_title>\r\n                    <author>SL
-        Wong</author>\r\n                    <volume>21</volume>\r\n                    <issue>8</issue>\r\n
-        \                   <first_page>424</first_page>\r\n                    <cYear>2005</cYear>\r\n
-        \                   <doi>10.1016/j.tig.2005.06.006</doi>\r\n                    <unstructured_citation>Wong
-        SL, Zhang LV, Roth FP: Discovering functional relationships: biochemistry
-        versus genetics. Trends Genet. 2005, 21 (8): 424-427. 10.1016/j.tig.2005.06.006.</unstructured_citation>\r\n
-        \                 </citation>\r\n                  <citation key=\"570_CR11\">\r\n
-        \                   <journal_title>Nucleic Acids Res</journal_title>\r\n                    <author>M
-        Kanehisa</author>\r\n                    <volume>28</volume>\r\n                    <issue>1</issue>\r\n
-        \                   <first_page>27</first_page>\r\n                    <cYear>2000</cYear>\r\n
-        \                   <doi>10.1093/nar/28.1.27</doi>\r\n                    <unstructured_citation>Kanehisa
-        M, Goto S: KEGG: kyoto encyclopedia of genes and genomes. Nucleic Acids Res.
-        2000, 28 (1): 27-30. 10.1093/nar/28.1.27.</unstructured_citation>\r\n                  </citation>\r\n
-        \                 <citation key=\"570_CR12\">\r\n                    <journal_title>Bioinformatics</journal_title>\r\n
-        \                   <author>Y Yamanishi</author>\r\n                    <volume>20</volume>\r\n
-        \                   <issue>Suppl 1</issue>\r\n                    <first_page>I363</first_page>\r\n
-        \                   <cYear>2004</cYear>\r\n                    <doi>10.1093/bioinformatics/bth910</doi>\r\n
-        \                   <unstructured_citation>Yamanishi Y, Vert JP, Kanehisa
-        M: Protein network inference from multiple genomic data: a supervised approach.
-        Bioinformatics. 2004, 20 (Suppl 1): I363-I370. 10.1093/bioinformatics/bth910.</unstructured_citation>\r\n
-        \                 </citation>\r\n                  <citation key=\"570_CR13\">\r\n
-        \                   <unstructured_citation>GRIFn Home Page. [\r\n                    http://function.princeton.edu/GRIFn\r\n
-        \                   \r\n                  ]</unstructured_citation>\r\n                  </citation>\r\n
-        \                 <citation key=\"570_CR14\">\r\n                    <journal_title>Nature</journal_title>\r\n
-        \                   <author>AC Gavin</author>\r\n                    <volume>415</volume>\r\n
-        \                   <issue>6868</issue>\r\n                    <first_page>141</first_page>\r\n
-        \                   <cYear>2002</cYear>\r\n                    <doi>10.1038/415141a</doi>\r\n
-        \                   <unstructured_citation>Gavin AC, Bosche M, Krause R, Grandi
-        P, Marzioch M, Bauer A, Schultz J, Rick JM, Michon AM, Cruciat CM: Functional
-        organization of the yeast proteome by systematic analysis of protein complexes.
-        Nature. 2002, 415 (6868): 141-147. 10.1038/415141a.</unstructured_citation>\r\n
-        \                 </citation>\r\n                  <citation key=\"570_CR15\">\r\n
-        \                   <journal_title>J Mol Biol</journal_title>\r\n                    <author>E
-        Sprinzak</author>\r\n                    <volume>327</volume>\r\n                    <issue>5</issue>\r\n
-        \                   <first_page>919</first_page>\r\n                    <cYear>2003</cYear>\r\n
-        \                   <doi>10.1016/S0022-2836(03)00239-0</doi>\r\n                    <unstructured_citation>Sprinzak
-        E, Sattath S, Margalit H: How reliable are experimental protein-protein interaction
-        data?. J Mol Biol. 2003, 327 (5): 919-923. 10.1016/S0022-2836(03)00239-0.</unstructured_citation>\r\n
-        \                 </citation>\r\n                  <citation key=\"570_CR16\">\r\n
-        \                   <journal_title>Nature</journal_title>\r\n                    <author>P
-        Uetz</author>\r\n                    <volume>403</volume>\r\n                    <issue>6770</issue>\r\n
-        \                   <first_page>623</first_page>\r\n                    <cYear>2000</cYear>\r\n
-        \                   <doi>10.1038/35001009</doi>\r\n                    <unstructured_citation>Uetz
-        P, Giot L, Cagney G, Mansfield TA, Judson RS, Knight JR, Lockshon D, Narayan
-        V, Srinivasan M, Pochart P: A comprehensive analysis of protein-protein interactions
-        in Saccharomyces cerevisiae. Nature. 2000, 403 (6770): 623-627. 10.1038/35001009.</unstructured_citation>\r\n
-        \                 </citation>\r\n                  <citation key=\"570_CR17\">\r\n
-        \                   <journal_title>Nature</journal_title>\r\n                    <author>C
-        von Mering</author>\r\n                    <volume>417</volume>\r\n                    <issue>6887</issue>\r\n
-        \                   <first_page>399</first_page>\r\n                    <cYear>2002</cYear>\r\n
-        \                   <doi>10.1038/nature750</doi>\r\n                    <unstructured_citation>von
-        Mering C, Krause R, Snel B, Cornell M, Oliver SG, Fields S, Bork P: Comparative
-        assessment of large-scale data sets of protein-protein interactions. Nature.
-        2002, 417 (6887): 399-403. 10.1038/nature750.</unstructured_citation>\r\n
-        \                 </citation>\r\n                  <citation key=\"570_CR18\">\r\n
-        \                   <journal_title>Bioinformatics</journal_title>\r\n                    <author>SG
-        Lee</author>\r\n                    <volume>20</volume>\r\n                    <issue>3</issue>\r\n
-        \                   <first_page>381</first_page>\r\n                    <cYear>2004</cYear>\r\n
-        \                   <doi>10.1093/bioinformatics/btg420</doi>\r\n                    <unstructured_citation>Lee
-        SG, Hur JU, Kim YS: A graph-theoretic modeling on GO space for biological
-        interpretation of gene clusters. Bioinformatics. 2004, 20 (3): 381-388. 10.1093/bioinformatics/btg420.</unstructured_citation>\r\n
-        \                 </citation>\r\n                  <citation key=\"570_CR19\">\r\n
-        \                   <journal_title>Nat Genet</journal_title>\r\n                    <author>M
-        Ashburner</author>\r\n                    <volume>25</volume>\r\n                    <issue>1</issue>\r\n
-        \                   <first_page>25</first_page>\r\n                    <cYear>2000</cYear>\r\n
-        \                   <doi>10.1038/75556</doi>\r\n                    <unstructured_citation>Ashburner
-        M, Ball CA, Blake JA, Botstein D, Butler H, Cherry JM, Davis AP, Dolinski
-        K, Dwight SS, Eppig JT: Gene ontology: tool for the unification of biology.
-        The Gene Ontology Consortium. Nat Genet. 2000, 25 (1): 25-29. 10.1038/75556.</unstructured_citation>\r\n
-        \                 </citation>\r\n                  <citation key=\"570_CR20\">\r\n
-        \                   <journal_title>Nucleic Acids Res</journal_title>\r\n                    <author>CA
-        Ball</author>\r\n                    <volume>28</volume>\r\n                    <issue>1</issue>\r\n
-        \                   <first_page>77</first_page>\r\n                    <cYear>2000</cYear>\r\n
-        \                   <doi>10.1093/nar/28.1.77</doi>\r\n                    <unstructured_citation>Ball
-        CA, Dolinski K, Dwight SS, Harris MA, Issel-Tarver L, Kasarskis A, Scafe CR,
-        Sherlock G, Binkley G, Jin H: Integrating functional genomic information into
-        the Saccharomyces genome database. Nucleic Acids Res. 2000, 28 (1): 77-80.
-        10.1093/nar/28.1.77.</unstructured_citation>\r\n                  </citation>\r\n
-        \                 <citation key=\"570_CR21\">\r\n                    <journal_title>Nucleic
-        Acids Res</journal_title>\r\n                    <author>HW Mewes</author>\r\n
-        \                   <volume>30</volume>\r\n                    <issue>1</issue>\r\n
-        \                   <first_page>31</first_page>\r\n                    <cYear>2002</cYear>\r\n
-        \                   <doi>10.1093/nar/30.1.31</doi>\r\n                    <unstructured_citation>Mewes
-        HW, Frishman D, Guldener U, Mannhaupt G, Mayer K, Mokrejs M, Morgenstern B,
-        Munsterkotter M, Rudd S, Weil B: MIPS: a database for genomes and protein
-        sequences. Nucleic Acids Res. 2002, 30 (1): 31-34. 10.1093/nar/30.1.31.</unstructured_citation>\r\n
-        \                 </citation>\r\n                  <citation key=\"570_CR22\">\r\n
-        \                   <journal_title>Nucleic Acids Res</journal_title>\r\n                    <author>MC
-        Costanzo</author>\r\n                    <volume>29</volume>\r\n                    <issue>1</issue>\r\n
-        \                   <first_page>75</first_page>\r\n                    <cYear>2001</cYear>\r\n
-        \                   <doi>10.1093/nar/29.1.75</doi>\r\n                    <unstructured_citation>Costanzo
-        MC, Crawford ME, Hirschman JE, Kranz JE, Olsen P, Robertson LS, Skrzypek MS,
-        Braun BR, Hopkins KL, Kondu P: YPD, PombePD and WormPD: model organism volumes
-        of the BioKnowledge library, an integrated resource for protein information.
-        Nucleic Acids Res. 2001, 29 (1): 75-79. 10.1093/nar/29.1.75.</unstructured_citation>\r\n
-        \                 </citation>\r\n                  <citation key=\"570_CR23\">\r\n
-        \                   <journal_title>Curr Opin Microbiol</journal_title>\r\n
-        \                   <author>R Jansen</author>\r\n                    <volume>7</volume>\r\n
-        \                   <issue>5</issue>\r\n                    <first_page>535</first_page>\r\n
-        \                   <cYear>2004</cYear>\r\n                    <doi>10.1016/j.mib.2004.08.012</doi>\r\n
-        \                   <unstructured_citation>Jansen R, Gerstein M: Analyzing
-        protein function on a genomic scale: the importance of gold-standard positives
-        and negatives for network prediction. Curr Opin Microbiol. 2004, 7 (5): 535-545.
-        10.1016/j.mib.2004.08.012.</unstructured_citation>\r\n                  </citation>\r\n
-        \                 <citation key=\"570_CR24\">\r\n                    <journal_title>BMC
-        Bioinformatics</journal_title>\r\n                    <author>A Patil</author>\r\n
-        \                   <volume>6</volume>\r\n                    <issue>1</issue>\r\n
-        \                   <first_page>100</first_page>\r\n                    <cYear>2005</cYear>\r\n
-        \                   <doi>10.1186/1471-2105-6-100</doi>\r\n                    <unstructured_citation>Patil
-        A, Nakamura H: Filtering high-throughput protein-protein interaction data
-        using a combination of genomic features. BMC Bioinformatics. 2005, 6 (1):
-        100-10.1186/1471-2105-6-100.</unstructured_citation>\r\n                  </citation>\r\n
-        \                 <citation key=\"570_CR25\">\r\n                    <journal_title>Nature</journal_title>\r\n
-        \                   <author>WK Huh</author>\r\n                    <volume>425</volume>\r\n
-        \                   <issue>6959</issue>\r\n                    <first_page>686</first_page>\r\n
-        \                   <cYear>2003</cYear>\r\n                    <doi>10.1038/nature02026</doi>\r\n
-        \                   <unstructured_citation>Huh WK, Falvo JV, Gerke LC, Carroll
-        AS, Howson RW, Weissman JS, O'Shea EK: Global analysis of protein localization
-        in budding yeast. Nature. 2003, 425 (6959): 686-691. 10.1038/nature02026.</unstructured_citation>\r\n
-        \                 </citation>\r\n                  <citation key=\"570_CR26\">\r\n
-        \                   <journal_title>Mol Cell Proteomics</journal_title>\r\n
-        \                   <author>CM Deane</author>\r\n                    <volume>1</volume>\r\n
-        \                   <issue>5</issue>\r\n                    <first_page>349</first_page>\r\n
-        \                   <cYear>2002</cYear>\r\n                    <doi>10.1074/mcp.M100037-MCP200</doi>\r\n
-        \                   <unstructured_citation>Deane CM, Salwinski L, Xenarios
-        I, Eisenberg D: Protein interactions: two methods for assessment of the reliability
-        of high throughput observations. Mol Cell Proteomics. 2002, 1 (5): 349-356.
-        10.1074/mcp.M100037-MCP200.</unstructured_citation>\r\n                  </citation>\r\n
-        \                 <citation key=\"570_CR27\">\r\n                    <author>Y
-        Qi</author>\r\n                    <first_page>531</first_page>\r\n                    <cYear>2005</cYear>\r\n
-        \                   <volume_title>Pac Symp Biocomput</volume_title>\r\n                    <unstructured_citation>Qi
-        Y, Klein-Seetharaman J, Bar-Joseph Z: Random forest similarity for protein-protein
-        interaction prediction from multiple sources. Pac Symp Biocomput. 2005, 531-542.</unstructured_citation>\r\n
-        \                 </citation>\r\n                  <citation key=\"570_CR28\">\r\n
-        \                   <journal_title>Curr Opin Struct Biol</journal_title>\r\n
-        \                   <author>P Bork</author>\r\n                    <volume>14</volume>\r\n
-        \                   <issue>3</issue>\r\n                    <first_page>292</first_page>\r\n
-        \                   <cYear>2004</cYear>\r\n                    <doi>10.1016/j.sbi.2004.05.003</doi>\r\n
-        \                   <unstructured_citation>Bork P, Jensen LJ, von Mering C,
-        Ramani AK, Lee I, Marcotte EM: Protein interaction networks from yeast to
-        human. Curr Opin Struct Biol. 2004, 14 (3): 292-299. 10.1016/j.sbi.2004.05.003.</unstructured_citation>\r\n
-        \                 </citation>\r\n                  <citation key=\"570_CR29\">\r\n
-        \                   <journal_title>Nucleic Acids Res</journal_title>\r\n                    <author>I
-        Xenarios</author>\r\n                    <volume>28</volume>\r\n                    <issue>1</issue>\r\n
-        \                   <first_page>289</first_page>\r\n                    <cYear>2000</cYear>\r\n
-        \                   <doi>10.1093/nar/28.1.289</doi>\r\n                    <unstructured_citation>Xenarios
-        I, Rice DW, Salwinski L, Baron MK, Marcotte EM, Eisenberg D: DIP: the database
-        of interacting proteins. Nucleic Acids Res. 2000, 28 (1): 289-291. 10.1093/nar/28.1.289.</unstructured_citation>\r\n
-        \                 </citation>\r\n                  <citation key=\"570_CR30\">\r\n
-        \                   <journal_title>Genome Biol</journal_title>\r\n                    <author>BJ
-        Breitkreutz</author>\r\n                    <volume>4</volume>\r\n                    <issue>3</issue>\r\n
-        \                   <first_page>R23</first_page>\r\n                    <cYear>2003</cYear>\r\n
-        \                   <doi>10.1186/gb-2003-4-3-r23</doi>\r\n                    <unstructured_citation>Breitkreutz
-        BJ, Stark C, Tyers M: The GRID: the General Repository for Interaction Datasets.
-        Genome Biol. 2003, 4 (3): R23-10.1186/gb-2003-4-3-r23.</unstructured_citation>\r\n
-        \                 </citation>\r\n                  <citation key=\"570_CR31\">\r\n
-        \                   <doi provider=\"crossref\">10.1093/nar/gki051</doi>\r\n
-        \                   <unstructured_citation>Alfarano C, Andrade CE, Anthony
-        K, Bahroos N, Bajec M, Bantoft K, Betel D, Bobechko B, Boutilier K, Burgess
-        E: The Biomolecular Interaction Network Database and related tools 2005 update.
-        Nucleic Acids Res. 2005, D418-424. 33 Database</unstructured_citation>\r\n
-        \                 </citation>\r\n                  <citation key=\"570_CR32\">\r\n
-        \                   <journal_title>Bioinformatics</journal_title>\r\n                    <author>PW
-        Lord</author>\r\n                    <volume>19</volume>\r\n                    <issue>10</issue>\r\n
-        \                   <first_page>1275</first_page>\r\n                    <cYear>2003</cYear>\r\n
-        \                   <doi>10.1093/bioinformatics/btg153</doi>\r\n                    <unstructured_citation>Lord
-        PW, Stevens RD, Brass A, Goble CA: Investigating semantic similarity measures
-        across the Gene Ontology: the relationship between sequence and annotation.
-        Bioinformatics. 2003, 19 (10): 1275-1283. 10.1093/bioinformatics/btg153.</unstructured_citation>\r\n
-        \                 </citation>\r\n                  <citation key=\"570_CR33\">\r\n
-        \                   <journal_title>BMC Bioinformatics</journal_title>\r\n
-        \                   <author>A Ben-Hur</author>\r\n                    <volume>7</volume>\r\n
-        \                   <issue>Suppl61</issue>\r\n                    <first_page>S2</first_page>\r\n
-        \                   <cYear>2005</cYear>\r\n                    <unstructured_citation>Ben-Hur
-        A, Noble WS: Choosing negative examples for the prediction of protein-protein
-        interactions. BMC Bioinformatics. 2005, 7 (Suppl61): S2-</unstructured_citation>\r\n
-        \                 </citation>\r\n                  <citation key=\"570_CR34\">\r\n
-        \                   <journal_title>Proc Natl Acad Sci U S A</journal_title>\r\n
-        \                   <author>T Ito</author>\r\n                    <volume>98</volume>\r\n
-        \                   <issue>8</issue>\r\n                    <first_page>4569</first_page>\r\n
-        \                   <cYear>2001</cYear>\r\n                    <doi>10.1073/pnas.061034498</doi>\r\n
-        \                   <unstructured_citation>Ito T, Chiba T, Ozawa R, Yoshida
-        M, Hattori M, Sakaki Y: A comprehensive two-hybrid analysis to explore the
-        yeast protein interactome. Proc Natl Acad Sci U S A. 2001, 98 (8): 4569-4574.
-        10.1073/pnas.061034498.</unstructured_citation>\r\n                  </citation>\r\n
-        \                 <citation key=\"570_CR35\">\r\n                    <journal_title>Science</journal_title>\r\n
-        \                   <author>AH Tong</author>\r\n                    <volume>295</volume>\r\n
-        \                   <issue>5553</issue>\r\n                    <first_page>321</first_page>\r\n
-        \                   <cYear>2002</cYear>\r\n                    <doi>10.1126/science.1064987</doi>\r\n
-        \                   <unstructured_citation>Tong AH, Drees B, Nardelli G, Bader
-        GD, Brannetti B, Castagnoli L, Evangelista M, Ferracuti S, Nelson B, Paoluzi
-        S: A combined experimental and computational strategy to define protein interaction
-        networks for peptide recognition modules. Science. 2002, 295 (5553): 321-324.
-        10.1126/science.1064987.</unstructured_citation>\r\n                  </citation>\r\n
-        \                 <citation key=\"570_CR36\">\r\n                    <journal_title>Nature</journal_title>\r\n
-        \                   <author>Y Ho</author>\r\n                    <volume>415</volume>\r\n
-        \                   <issue>6868</issue>\r\n                    <first_page>180</first_page>\r\n
-        \                   <cYear>2002</cYear>\r\n                    <doi>10.1038/415180a</doi>\r\n
-        \                   <unstructured_citation>Ho Y, Gruhler A, Heilbut A, Bader
-        GD, Moore L, Adams SL, Millar A, Taylor P, Bennett K, Boutilier K: Systematic
-        identification of protein complexes in Saccharomyces cerevisiae by mass spectrometry.
-        Nature. 2002, 415 (6868): 180-183. 10.1038/415180a.</unstructured_citation>\r\n
-        \                 </citation>\r\n                  <citation key=\"570_CR37\">\r\n
-        \                   <journal_title>Mol Biol Cell</journal_title>\r\n                    <author>AP
-        Gasch</author>\r\n                    <volume>12</volume>\r\n                    <issue>10</issue>\r\n
-        \                   <first_page>2987</first_page>\r\n                    <cYear>2001</cYear>\r\n
-        \                   <doi>10.1091/mbc.12.10.2987</doi>\r\n                    <unstructured_citation>Gasch
-        AP, Huang M, Metzner S, Botstein D, Elledge SJ, Brown PO: Genomic expression
-        responses to DNA-damaging agents and the regulatory role of the yeast ATR
-        homolog Mec1p. Mol Biol Cell. 2001, 12 (10): 2987-3003.</unstructured_citation>\r\n
-        \                 </citation>\r\n                  <citation key=\"570_CR38\">\r\n
-        \                   <journal_title>Mol Biol Cell</journal_title>\r\n                    <author>PT
-        Spellman</author>\r\n                    <volume>9</volume>\r\n                    <issue>12</issue>\r\n
-        \                   <first_page>3273</first_page>\r\n                    <cYear>1998</cYear>\r\n
-        \                   <doi>10.1091/mbc.9.12.3273</doi>\r\n                    <unstructured_citation>Spellman
-        PT, Sherlock G, Zhang MQ, Iyer VR, Anders K, Eisen MB, Brown PO, Botstein
-        D, Futcher B: Comprehensive identification of cell cycle-regulated genes of
-        the yeast Saccharomyces cerevisiae by microarray hybridization. Mol Biol Cell.
-        1998, 9 (12): 3273-3297.</unstructured_citation>\r\n                  </citation>\r\n
-        \               </citation_list>\r\n              </journal_article>\r\n            </journal>\r\n
-        \         </crossref>\r\n        </doi_record>\r\n      </query>\r\n    </body>\r\n
-        \ </query_result>\r\n</crossref_result>"
-    http_version:
-  recorded_at: Wed, 09 Jun 2021 12:56:48 GMT
-recorded_with: VCR 3.0.3

data/spec/fixtures/vcr_cassettes/Bolognese_Metadata/get_crossref_metadata/not_found_error.yml DELETED Viewed

@@ -1,97 +0,0 @@
----
-http_interactions:
-- request:
-    method: get
-    uri: https://doi.org/ra/10.7554
-    body:
-      encoding: US-ASCII
-      string: ''
-    headers:
-      User-Agent:
-      - Mozilla/5.0 (compatible; Maremma/4.9.4; mailto:info@datacite.org)
-      Accept:
-      - text/html,application/json,application/xml;q=0.9, text/plain;q=0.8,image/png,*/*;q=0.5
-      Accept-Encoding:
-      - gzip,deflate
-  response:
-    status:
-      code: 200
-      message: ''
-    headers:
-      Date:
-      - Wed, 09 Jun 2021 09:38:38 GMT
-      Content-Type:
-      - application/json;charset=UTF-8
-      Connection:
-      - keep-alive
-      Content-Encoding:
-      - gzip
-      Cf-Cache-Status:
-      - DYNAMIC
-      Cf-Request-Id:
-      - 0a91bc702d00004e86a712a000000001
-      Expect-Ct:
-      - max-age=604800, report-uri="https://report-uri.cloudflare.com/cdn-cgi/beacon/expect-ct"
-      Report-To:
-      - '{"endpoints":[{"url":"https:\/\/a.nel.cloudflare.com\/report\/v2?s=FaOsQxHPjZ%2BLhpE0JDtsdkYLSG6oqHCarGoNwIrvLM9pgFtdvl5Xd0C3FSooApdcuAjOqJ49%2Fcr9jlCqFpm1hco0BRFNHxcItFNrLmKTcZSUkWus"}],"group":"cf-nel","max_age":604800}'
-      Nel:
-      - '{"report_to":"cf-nel","max_age":604800}'
-      Strict-Transport-Security:
-      - max-age=31536000; includeSubDomains; preload
-      Server:
-      - cloudflare
-      Cf-Ray:
-      - 65c963604bf54e86-FRA
-      Alt-Svc:
-      - h3-27=":443"; ma=86400, h3-28=":443"; ma=86400, h3-29=":443"; ma=86400, h3=":443";
-        ma=86400
-    body:
-      encoding: ASCII-8BIT
-      string: !binary |-
-        H4sIAAAAAAAAA4vmUlCoBmIFBSUXf08lKwUlQwM9c1NTEyUdiGiQI0jQuSi/uLgoNU0JKFjLFQsA4VlVnTYAAAA=
-    http_version:
-  recorded_at: Wed, 09 Jun 2021 09:38:38 GMT
-- request:
-    method: get
-    uri: https://api.crossref.org/works/10.7554/elife.01567x/transform/application/vnd.crossref.unixsd+xml
-    body:
-      encoding: US-ASCII
-      string: ''
-    headers:
-      User-Agent:
-      - Mozilla/5.0 (compatible; Maremma/4.9.4; mailto:info@datacite.org)
-      Accept:
-      - text/xml;charset=utf-8
-      Accept-Encoding:
-      - gzip,deflate
-  response:
-    status:
-      code: 404
-      message: Not Found
-    headers:
-      Content-Type:
-      - text/plain
-      Access-Control-Allow-Origin:
-      - "*"
-      Access-Control-Allow-Headers:
-      - X-Requested-With
-      Content-Length:
-      - '19'
-      Server:
-      - http-kit
-      Date:
-      - Wed, 09 Jun 2021 09:38:39 GMT
-      X-Rate-Limit-Limit:
-      - '50'
-      X-Rate-Limit-Interval:
-      - 1s
-      Permissions-Policy:
-      - interest-cohort=()
-      Connection:
-      - close
-    body:
-      encoding: ASCII-8BIT
-      string: Resource not found.
-    http_version:
-  recorded_at: Wed, 09 Jun 2021 09:38:39 GMT
-recorded_with: VCR 3.0.3