bolognese 2.2.0 → 2.6.1

This diff represents the content of publicly available package versions that have been released to one of the supported registries. The information contained in this diff is provided for informational purposes only and reflects changes between package versions as they appear in their respective public registries.
Files changed (585) hide show
  1. checksums.yaml +4 -4
  2. data/.github/workflows/ci.yml +1 -1
  3. data/.github/workflows/release.yml +2 -2
  4. data/Gemfile +1 -1
  5. data/Gemfile.lock +196 -164
  6. data/README.md +1 -1
  7. data/bolognese.gemspec +30 -37
  8. data/lib/bolognese/author_utils.rb +1 -4
  9. data/lib/bolognese/citeproc_extensions.rb +48 -0
  10. data/lib/bolognese/datacite_utils.rb +17 -7
  11. data/lib/bolognese/metadata.rb +8 -5
  12. data/lib/bolognese/metadata_utils.rb +19 -4
  13. data/lib/bolognese/readers/citeproc_reader.rb +6 -0
  14. data/lib/bolognese/readers/crossref_reader.rb +50 -4
  15. data/lib/bolognese/readers/datacite_reader.rb +11 -34
  16. data/lib/bolognese/readers/schema_org_reader.rb +21 -2
  17. data/lib/bolognese/utils.rb +91 -19
  18. data/lib/bolognese/version.rb +1 -1
  19. data/lib/bolognese/writers/csv_writer.rb +3 -5
  20. data/lib/bolognese/writers/schema_org_writer.rb +4 -0
  21. data/lib/bolognese.rb +1 -4
  22. data/resources/kernel-4/include/datacite-contributorType-v4.xsd +3 -1
  23. data/resources/kernel-4/include/datacite-dateType-v4.xsd +3 -1
  24. data/resources/kernel-4/include/datacite-relatedIdentifierType-v4.xsd +7 -2
  25. data/resources/kernel-4/include/datacite-relationType-v4.xsd +9 -3
  26. data/resources/kernel-4/include/datacite-resourceType-v4.xsd +8 -1
  27. data/resources/kernel-4/include/datacite-titleType-v4.xsd +1 -1
  28. data/resources/kernel-4/metadata.xsd +5 -1
  29. data/resources/kernel-4.6/include/datacite-contributorType-v4.xsd +37 -0
  30. data/resources/kernel-4.6/include/datacite-dateType-v4.xsd +27 -0
  31. data/resources/kernel-4.6/include/datacite-descriptionType-v4.xsd +19 -0
  32. data/resources/kernel-4.6/include/datacite-funderIdentifierType-v4.xsd +16 -0
  33. data/resources/kernel-4.6/include/datacite-nameType-v4.xsd +10 -0
  34. data/resources/kernel-4.6/include/datacite-numberType-v4.xsd +12 -0
  35. data/resources/kernel-4.6/include/datacite-relatedIdentifierType-v4.xsd +37 -0
  36. data/resources/kernel-4.6/include/datacite-relationType-v4.xsd +57 -0
  37. data/resources/kernel-4.6/include/datacite-resourceType-v4.xsd +49 -0
  38. data/resources/kernel-4.6/include/datacite-titleType-v4.xsd +14 -0
  39. data/resources/kernel-4.6/include/xml.xsd +286 -0
  40. data/resources/kernel-4.6/metadata.xsd +712 -0
  41. data/resources/kernel-4.7/include/datacite-contributorType-v4.xsd +37 -0
  42. data/resources/kernel-4.7/include/datacite-dateType-v4.xsd +27 -0
  43. data/resources/kernel-4.7/include/datacite-descriptionType-v4.xsd +19 -0
  44. data/resources/kernel-4.7/include/datacite-funderIdentifierType-v4.xsd +16 -0
  45. data/resources/kernel-4.7/include/datacite-nameType-v4.xsd +10 -0
  46. data/resources/kernel-4.7/include/datacite-numberType-v4.xsd +12 -0
  47. data/resources/kernel-4.7/include/datacite-relatedIdentifierType-v4.xsd +39 -0
  48. data/resources/kernel-4.7/include/datacite-relationType-v4.xsd +59 -0
  49. data/resources/kernel-4.7/include/datacite-resourceType-v4.xsd +52 -0
  50. data/resources/kernel-4.7/include/datacite-titleType-v4.xsd +14 -0
  51. data/resources/kernel-4.7/include/xml.xsd +286 -0
  52. data/resources/kernel-4.7/metadata.xsd +715 -0
  53. metadata +141 -724
  54. data/spec/array_spec.rb +0 -22
  55. data/spec/author_utils_spec.rb +0 -259
  56. data/spec/cli_spec.rb +0 -226
  57. data/spec/datacite_utils_spec.rb +0 -207
  58. data/spec/doi_utils_spec.rb +0 -314
  59. data/spec/find_from_format_spec.rb +0 -114
  60. data/spec/fixtures/aida.json +0 -82
  61. data/spec/fixtures/cgimp_package.json +0 -18
  62. data/spec/fixtures/cit_package.json +0 -19
  63. data/spec/fixtures/citeproc-no-author.json +0 -26
  64. data/spec/fixtures/citeproc-no-categories.json +0 -21
  65. data/spec/fixtures/citeproc.json +0 -32
  66. data/spec/fixtures/codemeta.json +0 -86
  67. data/spec/fixtures/codemeta_v2.json +0 -86
  68. data/spec/fixtures/crosscite.json +0 -63
  69. data/spec/fixtures/crossref.bib +0 -14
  70. data/spec/fixtures/crossref.ris +0 -15
  71. data/spec/fixtures/crossref.xml +0 -606
  72. data/spec/fixtures/datacite-empty-sizes.xml +0 -57
  73. data/spec/fixtures/datacite-example-ROR-nameIdentifiers.xml +0 -125
  74. data/spec/fixtures/datacite-example-affiliation.xml +0 -114
  75. data/spec/fixtures/datacite-example-ancientdates-v4.3.xml +0 -29
  76. data/spec/fixtures/datacite-example-complicated-tba.xml +0 -56
  77. data/spec/fixtures/datacite-example-complicated-v3.0.xml +0 -48
  78. data/spec/fixtures/datacite-example-complicated-v4.0.xml +0 -54
  79. data/spec/fixtures/datacite-example-complicated-v4.1.xml +0 -57
  80. data/spec/fixtures/datacite-example-dissertation-v4.4.xml +0 -56
  81. data/spec/fixtures/datacite-example-escaped-text.xml +0 -56
  82. data/spec/fixtures/datacite-example-full-v4.4.xml +0 -114
  83. data/spec/fixtures/datacite-example-full-v4.5.xml +0 -255
  84. data/spec/fixtures/datacite-example-geolocation-2.xml +0 -141
  85. data/spec/fixtures/datacite-example-geolocation.xml +0 -66
  86. data/spec/fixtures/datacite-example-nameIdentifier-with-schemeURI.xml +0 -94
  87. data/spec/fixtures/datacite-example-polygon-v4.1.xml +0 -163
  88. data/spec/fixtures/datacite-example-relateditems-with-attributes.xml +0 -61
  89. data/spec/fixtures/datacite-example-relateditems.xml +0 -61
  90. data/spec/fixtures/datacite-example-xs-string.xml +0 -28
  91. data/spec/fixtures/datacite-formats-with-xs.xml +0 -22
  92. data/spec/fixtures/datacite-funderIdentifier.xml +0 -98
  93. data/spec/fixtures/datacite-geolocation-empty.xml +0 -159
  94. data/spec/fixtures/datacite-geolocationpolygons-multiple.xml +0 -76
  95. data/spec/fixtures/datacite-metadata-sample-complicated-v2.2.xml +0 -52
  96. data/spec/fixtures/datacite-multiple-language.xml +0 -38
  97. data/spec/fixtures/datacite-multiple-rights.xml +0 -59
  98. data/spec/fixtures/datacite-schema-2.2.xml +0 -80
  99. data/spec/fixtures/datacite-seriesinformation.xml +0 -46
  100. data/spec/fixtures/datacite-space-in-sizes.xml +0 -52
  101. data/spec/fixtures/datacite-xml-lang.xml +0 -51
  102. data/spec/fixtures/datacite.json +0 -89
  103. data/spec/fixtures/datacite.xml +0 -40
  104. data/spec/fixtures/datacite_blank_name_identifier.xml +0 -22
  105. data/spec/fixtures/datacite_blank_publisher.xml +0 -18
  106. data/spec/fixtures/datacite_dataset.xml +0 -58
  107. data/spec/fixtures/datacite_journal_article.xml +0 -64
  108. data/spec/fixtures/datacite_malformed_creator.xml +0 -52
  109. data/spec/fixtures/datacite_missing_creator.xml +0 -33
  110. data/spec/fixtures/datacite_schema_3.xml +0 -58
  111. data/spec/fixtures/datacite_software.json +0 -21
  112. data/spec/fixtures/datacite_software_missing_comma.json +0 -18
  113. data/spec/fixtures/datacite_software_overlapping_keys.json +0 -18
  114. data/spec/fixtures/datacite_software_version.json +0 -74
  115. data/spec/fixtures/edam_package.json +0 -12
  116. data/spec/fixtures/funding_reference.xml +0 -53
  117. data/spec/fixtures/gtex.xml +0 -71
  118. data/spec/fixtures/maremma/codemeta.json +0 -36
  119. data/spec/fixtures/nist.xml +0 -35
  120. data/spec/fixtures/ns0.xml +0 -2
  121. data/spec/fixtures/pure.bib +0 -14
  122. data/spec/fixtures/pure.ris +0 -15
  123. data/spec/fixtures/pure.xml +0 -188
  124. data/spec/fixtures/ris_bug.ris +0 -9
  125. data/spec/fixtures/schema_4.0.xml +0 -140
  126. data/spec/fixtures/schema_org.json +0 -50
  127. data/spec/fixtures/schema_org_geolocation.json +0 -82
  128. data/spec/fixtures/schema_org_geoshape.json +0 -550
  129. data/spec/fixtures/schema_org_gtex.json +0 -75
  130. data/spec/fixtures/schema_org_list.json +0 -12623
  131. data/spec/fixtures/schema_org_tdl_iodp_invalid_authors.json +0 -25
  132. data/spec/fixtures/schema_org_topmed.json +0 -53
  133. data/spec/fixtures/schema_org_type_as_array.json +0 -41
  134. data/spec/fixtures/vcr_cassettes/Bolognese_CLI/convert_from_id/crossref/default.yml +0 -106
  135. data/spec/fixtures/vcr_cassettes/Bolognese_CLI/convert_from_id/crossref/to_bibtex.yml +0 -106
  136. data/spec/fixtures/vcr_cassettes/Bolognese_CLI/convert_from_id/crossref/to_citation.yml +0 -106
  137. data/spec/fixtures/vcr_cassettes/Bolognese_CLI/convert_from_id/crossref/to_crossref.yml +0 -106
  138. data/spec/fixtures/vcr_cassettes/Bolognese_CLI/convert_from_id/crossref/to_datacite.yml +0 -106
  139. data/spec/fixtures/vcr_cassettes/Bolognese_CLI/convert_from_id/crossref/to_jats.yml +0 -106
  140. data/spec/fixtures/vcr_cassettes/Bolognese_CLI/convert_from_id/crossref/to_schema_org.yml +0 -106
  141. data/spec/fixtures/vcr_cassettes/Bolognese_CLI/convert_from_id/datacite/default.yml +0 -106
  142. data/spec/fixtures/vcr_cassettes/Bolognese_CLI/convert_from_id/datacite/to_bibtex.yml +0 -106
  143. data/spec/fixtures/vcr_cassettes/Bolognese_CLI/convert_from_id/datacite/to_citation.yml +0 -106
  144. data/spec/fixtures/vcr_cassettes/Bolognese_CLI/convert_from_id/datacite/to_datacite.yml +0 -106
  145. data/spec/fixtures/vcr_cassettes/Bolognese_CLI/convert_from_id/datacite/to_datacite_json.yml +0 -106
  146. data/spec/fixtures/vcr_cassettes/Bolognese_CLI/convert_from_id/datacite/to_jats.yml +0 -106
  147. data/spec/fixtures/vcr_cassettes/Bolognese_CLI/convert_from_id/datacite/to_schema_org.yml +0 -106
  148. data/spec/fixtures/vcr_cassettes/Bolognese_CLI/convert_from_id/schema_org/default.yml +0 -117
  149. data/spec/fixtures/vcr_cassettes/Bolognese_CLI/convert_from_id/schema_org/to_datacite.yml +0 -117
  150. data/spec/fixtures/vcr_cassettes/Bolognese_CLI/convert_from_id/schema_org/to_schema_org.yml +0 -115
  151. data/spec/fixtures/vcr_cassettes/Bolognese_CLI/find_from_format_by_id/crossref.yml +0 -54
  152. data/spec/fixtures/vcr_cassettes/Bolognese_CLI/find_from_format_by_id/datacite.yml +0 -54
  153. data/spec/fixtures/vcr_cassettes/Bolognese_CLI/find_from_format_by_id/jalc.yml +0 -54
  154. data/spec/fixtures/vcr_cassettes/Bolognese_CLI/find_from_format_by_id/kisti.yml +0 -54
  155. data/spec/fixtures/vcr_cassettes/Bolognese_CLI/find_from_format_by_id/medra.yml +0 -54
  156. data/spec/fixtures/vcr_cassettes/Bolognese_CLI/find_from_format_by_id/op.yml +0 -54
  157. data/spec/fixtures/vcr_cassettes/Bolognese_Metadata/authors_as_string/author.yml +0 -48
  158. data/spec/fixtures/vcr_cassettes/Bolognese_Metadata/authors_as_string/no_author.yml +0 -48
  159. data/spec/fixtures/vcr_cassettes/Bolognese_Metadata/authors_as_string/single_author.yml +0 -48
  160. data/spec/fixtures/vcr_cassettes/Bolognese_Metadata/authors_as_string/with_organization.yml +0 -48
  161. data/spec/fixtures/vcr_cassettes/Bolognese_Metadata/change_datacite_metadata/change_state.yml +0 -106
  162. data/spec/fixtures/vcr_cassettes/Bolognese_Metadata/change_datacite_metadata/change_title.yml +0 -106
  163. data/spec/fixtures/vcr_cassettes/Bolognese_Metadata/change_metadata_as_datacite_xml/change_description.yml +0 -55
  164. data/spec/fixtures/vcr_cassettes/Bolognese_Metadata/change_metadata_as_datacite_xml/change_identifiers.yml +0 -55
  165. data/spec/fixtures/vcr_cassettes/Bolognese_Metadata/change_metadata_as_datacite_xml/change_license.yml +0 -55
  166. data/spec/fixtures/vcr_cassettes/Bolognese_Metadata/change_metadata_as_datacite_xml/change_license_name.yml +0 -55
  167. data/spec/fixtures/vcr_cassettes/Bolognese_Metadata/change_metadata_as_datacite_xml/change_license_url.yml +0 -55
  168. data/spec/fixtures/vcr_cassettes/Bolognese_Metadata/change_metadata_as_datacite_xml/change_state.yml +0 -55
  169. data/spec/fixtures/vcr_cassettes/Bolognese_Metadata/change_metadata_as_datacite_xml/validates_against_schema.yml +0 -55
  170. data/spec/fixtures/vcr_cassettes/Bolognese_Metadata/change_metadata_as_datacite_xml/with_data_citation.yml +0 -55
  171. data/spec/fixtures/vcr_cassettes/Bolognese_Metadata/doi_api_url/doi.yml +0 -48
  172. data/spec/fixtures/vcr_cassettes/Bolognese_Metadata/doi_api_url/doi_with_protocol.yml +0 -48
  173. data/spec/fixtures/vcr_cassettes/Bolognese_Metadata/doi_api_url/dx_doi_org_url.yml +0 -48
  174. data/spec/fixtures/vcr_cassettes/Bolognese_Metadata/doi_api_url/force_test_resolver.yml +0 -48
  175. data/spec/fixtures/vcr_cassettes/Bolognese_Metadata/doi_api_url/https_url.yml +0 -48
  176. data/spec/fixtures/vcr_cassettes/Bolognese_Metadata/doi_api_url/test_resolver.yml +0 -48
  177. data/spec/fixtures/vcr_cassettes/Bolognese_Metadata/doi_api_url/test_resolver_http.yml +0 -48
  178. data/spec/fixtures/vcr_cassettes/Bolognese_Metadata/doi_from_url/doi.yml +0 -48
  179. data/spec/fixtures/vcr_cassettes/Bolognese_Metadata/doi_from_url/doi_with_special_characters.yml +0 -48
  180. data/spec/fixtures/vcr_cassettes/Bolognese_Metadata/doi_from_url/not_a_doi.yml +0 -48
  181. data/spec/fixtures/vcr_cassettes/Bolognese_Metadata/doi_from_url/sandbox_url.yml +0 -48
  182. data/spec/fixtures/vcr_cassettes/Bolognese_Metadata/doi_from_url/url.yml +0 -48
  183. data/spec/fixtures/vcr_cassettes/Bolognese_Metadata/doi_registration_agency/crossref.yml +0 -99
  184. data/spec/fixtures/vcr_cassettes/Bolognese_Metadata/doi_registration_agency/datacite.yml +0 -99
  185. data/spec/fixtures/vcr_cassettes/Bolognese_Metadata/doi_registration_agency/jalc.yml +0 -99
  186. data/spec/fixtures/vcr_cassettes/Bolognese_Metadata/doi_registration_agency/kisti.yml +0 -99
  187. data/spec/fixtures/vcr_cassettes/Bolognese_Metadata/doi_registration_agency/medra.yml +0 -99
  188. data/spec/fixtures/vcr_cassettes/Bolognese_Metadata/doi_registration_agency/not_a_valid_prefix.yml +0 -48
  189. data/spec/fixtures/vcr_cassettes/Bolognese_Metadata/doi_registration_agency/not_found.yml +0 -99
  190. data/spec/fixtures/vcr_cassettes/Bolognese_Metadata/doi_registration_agency/op.yml +0 -99
  191. data/spec/fixtures/vcr_cassettes/Bolognese_Metadata/doi_resolver/doi.yml +0 -48
  192. data/spec/fixtures/vcr_cassettes/Bolognese_Metadata/doi_resolver/doi_with_protocol.yml +0 -48
  193. data/spec/fixtures/vcr_cassettes/Bolognese_Metadata/doi_resolver/dx_doi_org_url.yml +0 -48
  194. data/spec/fixtures/vcr_cassettes/Bolognese_Metadata/doi_resolver/force_stage_resolver.yml +0 -48
  195. data/spec/fixtures/vcr_cassettes/Bolognese_Metadata/doi_resolver/https_url.yml +0 -48
  196. data/spec/fixtures/vcr_cassettes/Bolognese_Metadata/doi_resolver/stage_resolver.yml +0 -48
  197. data/spec/fixtures/vcr_cassettes/Bolognese_Metadata/doi_resolver/stage_resolver_http.yml +0 -48
  198. data/spec/fixtures/vcr_cassettes/Bolognese_Metadata/find_from_format_by_ID/crossref.yml +0 -157
  199. data/spec/fixtures/vcr_cassettes/Bolognese_Metadata/find_from_format_by_ID/crossref_doi_not_url.yml +0 -157
  200. data/spec/fixtures/vcr_cassettes/Bolognese_Metadata/find_from_format_by_ID/datacite.yml +0 -157
  201. data/spec/fixtures/vcr_cassettes/Bolognese_Metadata/find_from_format_by_ID/datacite_doi_http.yml +0 -157
  202. data/spec/fixtures/vcr_cassettes/Bolognese_Metadata/find_from_format_by_ID/github.yml +0 -106
  203. data/spec/fixtures/vcr_cassettes/Bolognese_Metadata/find_from_format_by_ID/orcid.yml +0 -106
  204. data/spec/fixtures/vcr_cassettes/Bolognese_Metadata/find_from_format_by_ID/schema_org.yml +0 -106
  205. data/spec/fixtures/vcr_cassettes/Bolognese_Metadata/find_from_format_by_ID/unknown_DOI_registration_agency.yml +0 -157
  206. data/spec/fixtures/vcr_cassettes/Bolognese_Metadata/find_from_format_from_file/bibtex.yml +0 -106
  207. data/spec/fixtures/vcr_cassettes/Bolognese_Metadata/find_from_format_from_file/citeproc.yml +0 -106
  208. data/spec/fixtures/vcr_cassettes/Bolognese_Metadata/find_from_format_from_file/codemeta.yml +0 -106
  209. data/spec/fixtures/vcr_cassettes/Bolognese_Metadata/find_from_format_from_file/crosscite.yml +0 -106
  210. data/spec/fixtures/vcr_cassettes/Bolognese_Metadata/find_from_format_from_file/crossref.yml +0 -106
  211. data/spec/fixtures/vcr_cassettes/Bolognese_Metadata/find_from_format_from_file/datacite.yml +0 -106
  212. data/spec/fixtures/vcr_cassettes/Bolognese_Metadata/find_from_format_from_file/datacite_json.yml +0 -106
  213. data/spec/fixtures/vcr_cassettes/Bolognese_Metadata/find_from_format_from_file/ris.yml +0 -106
  214. data/spec/fixtures/vcr_cassettes/Bolognese_Metadata/find_from_format_from_file/schema_org.yml +0 -106
  215. data/spec/fixtures/vcr_cassettes/Bolognese_Metadata/find_from_format_from_string/crosscite.yml +0 -106
  216. data/spec/fixtures/vcr_cassettes/Bolognese_Metadata/fos/hsh_to_fos_for_match.yml +0 -48
  217. data/spec/fixtures/vcr_cassettes/Bolognese_Metadata/fos/hsh_to_fos_for_with_schemeUri_in_hash.yml +0 -48
  218. data/spec/fixtures/vcr_cassettes/Bolognese_Metadata/fos/hsh_to_fos_match.yml +0 -48
  219. data/spec/fixtures/vcr_cassettes/Bolognese_Metadata/fos/hsh_to_fos_no_match.yml +0 -48
  220. data/spec/fixtures/vcr_cassettes/Bolognese_Metadata/fos/name_to_fos_for_match.yml +0 -48
  221. data/spec/fixtures/vcr_cassettes/Bolognese_Metadata/fos/name_to_fos_match.yml +0 -48
  222. data/spec/fixtures/vcr_cassettes/Bolognese_Metadata/fos/name_to_fos_no_match.yml +0 -48
  223. data/spec/fixtures/vcr_cassettes/Bolognese_Metadata/from_schema_org/with_id.yml +0 -48
  224. data/spec/fixtures/vcr_cassettes/Bolognese_Metadata/from_schema_org_creators/with_affiliation.yml +0 -48
  225. data/spec/fixtures/vcr_cassettes/Bolognese_Metadata/from_schema_org_creators/without_affiliation.yml +0 -48
  226. data/spec/fixtures/vcr_cassettes/Bolognese_Metadata/get_codemeta_metadata/maremma.yml +0 -75
  227. data/spec/fixtures/vcr_cassettes/Bolognese_Metadata/get_codemeta_metadata/metadata_reports.yml +0 -75
  228. data/spec/fixtures/vcr_cassettes/Bolognese_Metadata/get_crossref_metadata/DOI_with_ORCID_ID.yml +0 -103
  229. data/spec/fixtures/vcr_cassettes/Bolognese_Metadata/get_crossref_metadata/DOI_with_SICI_DOI.yml +0 -102
  230. data/spec/fixtures/vcr_cassettes/Bolognese_Metadata/get_crossref_metadata/DOI_with_data_citation.yml +0 -106
  231. data/spec/fixtures/vcr_cassettes/Bolognese_Metadata/get_crossref_metadata/JaLC.yml +0 -137
  232. data/spec/fixtures/vcr_cassettes/Bolognese_Metadata/get_crossref_metadata/KISTI.yml +0 -158
  233. data/spec/fixtures/vcr_cassettes/Bolognese_Metadata/get_crossref_metadata/OP.yml +0 -100
  234. data/spec/fixtures/vcr_cassettes/Bolognese_Metadata/get_crossref_metadata/affiliation_is_space.yml +0 -101
  235. data/spec/fixtures/vcr_cassettes/Bolognese_Metadata/get_crossref_metadata/another_book.yml +0 -138
  236. data/spec/fixtures/vcr_cassettes/Bolognese_Metadata/get_crossref_metadata/another_book_chapter.yml +0 -100
  237. data/spec/fixtures/vcr_cassettes/Bolognese_Metadata/get_crossref_metadata/article_id_as_page_number.yml +0 -101
  238. data/spec/fixtures/vcr_cassettes/Bolognese_Metadata/get_crossref_metadata/author_literal.yml +0 -108
  239. data/spec/fixtures/vcr_cassettes/Bolognese_Metadata/get_crossref_metadata/book.yml +0 -99
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  428. data/spec/fixtures/vcr_cassettes/Bolognese_Metadata/validate_funder_doi/1_7_4.yml +0 -48
  429. data/spec/fixtures/vcr_cassettes/Bolognese_Metadata/validate_funder_doi/1_7_5.yml +0 -48
  430. data/spec/fixtures/vcr_cassettes/Bolognese_Metadata/validate_funder_doi/1_7_6.yml +0 -48
  431. data/spec/fixtures/vcr_cassettes/Bolognese_Metadata/validate_funder_doi/1_7_7.yml +0 -48
  432. data/spec/fixtures/vcr_cassettes/Bolognese_Metadata/validate_funder_doi/1_7_8.yml +0 -48
  433. data/spec/fixtures/vcr_cassettes/Bolognese_Metadata/validate_funder_doi/1_7_9.yml +0 -48
  434. data/spec/fixtures/vcr_cassettes/Bolognese_Metadata/validate_funder_doi/funder_doi.yml +0 -48
  435. data/spec/fixtures/vcr_cassettes/Bolognese_Metadata/validate_funder_doi/funder_doi_without_prefix.yml +0 -48
  436. data/spec/fixtures/vcr_cassettes/Bolognese_Metadata/validate_funder_doi/non-funder_doi.yml +0 -48
  437. data/spec/fixtures/vcr_cassettes/Bolognese_Metadata/validate_orcid/validate_orcid.yml +0 -48
  438. data/spec/fixtures/vcr_cassettes/Bolognese_Metadata/validate_orcid/validate_orcid_https.yml +0 -48
  439. data/spec/fixtures/vcr_cassettes/Bolognese_Metadata/validate_orcid/validate_orcid_id.yml +0 -48
  440. data/spec/fixtures/vcr_cassettes/Bolognese_Metadata/validate_orcid/validate_orcid_sandbox.yml +0 -65
  441. data/spec/fixtures/vcr_cassettes/Bolognese_Metadata/validate_orcid/validate_orcid_sandbox_https.yml +0 -65
  442. data/spec/fixtures/vcr_cassettes/Bolognese_Metadata/validate_orcid/validate_orcid_with_spaces.yml +0 -48
  443. data/spec/fixtures/vcr_cassettes/Bolognese_Metadata/validate_orcid/validate_orcid_wrong_id.yml +0 -48
  444. data/spec/fixtures/vcr_cassettes/Bolognese_Metadata/validate_orcid/validate_orcid_www.yml +0 -48
  445. data/spec/fixtures/vcr_cassettes/Bolognese_Metadata/validate_orcid_scheme/validate_orcid_scheme.yml +0 -48
  446. data/spec/fixtures/vcr_cassettes/Bolognese_Metadata/validate_orcid_scheme/validate_orcid_scheme_https.yml +0 -48
  447. data/spec/fixtures/vcr_cassettes/Bolognese_Metadata/validate_orcid_scheme/validate_orcid_scheme_trailing_slash.yml +0 -48
  448. data/spec/fixtures/vcr_cassettes/Bolognese_Metadata/validate_orcid_scheme/validate_orcid_scheme_www.yml +0 -48
  449. data/spec/fixtures/vcr_cassettes/Bolognese_Metadata/validate_prefix/doi.yml +0 -48
  450. data/spec/fixtures/vcr_cassettes/Bolognese_Metadata/validate_prefix/doi_as_url.yml +0 -48
  451. data/spec/fixtures/vcr_cassettes/Bolognese_Metadata/validate_prefix/doi_with_protocol.yml +0 -48
  452. data/spec/fixtures/vcr_cassettes/Bolognese_Metadata/validate_prefix/only_prefix.yml +0 -48
  453. data/spec/fixtures/vcr_cassettes/Bolognese_Metadata/validate_url/DOI.yml +0 -48
  454. data/spec/fixtures/vcr_cassettes/Bolognese_Metadata/validate_url/ISSN.yml +0 -48
  455. data/spec/fixtures/vcr_cassettes/Bolognese_Metadata/validate_url/URL.yml +0 -48
  456. data/spec/fixtures/vcr_cassettes/Bolognese_Metadata/validate_url/string.yml +0 -48
  457. data/spec/fixtures/vcr_cassettes/Bolognese_Metadata/write_metadata_as_bibtex/BlogPosting.yml +0 -55
  458. data/spec/fixtures/vcr_cassettes/Bolognese_Metadata/write_metadata_as_bibtex/Dataset.yml +0 -55
  459. data/spec/fixtures/vcr_cassettes/Bolognese_Metadata/write_metadata_as_bibtex/authors_with_affiliations.yml +0 -114
  460. data/spec/fixtures/vcr_cassettes/Bolognese_Metadata/write_metadata_as_bibtex/climate_data.yml +0 -55
  461. data/spec/fixtures/vcr_cassettes/Bolognese_Metadata/write_metadata_as_bibtex/from_schema_org.yml +0 -115
  462. data/spec/fixtures/vcr_cassettes/Bolognese_Metadata/write_metadata_as_bibtex/keywords_subject_scheme.yml +0 -55
  463. data/spec/fixtures/vcr_cassettes/Bolognese_Metadata/write_metadata_as_bibtex/maremma.yml +0 -75
  464. data/spec/fixtures/vcr_cassettes/Bolognese_Metadata/write_metadata_as_bibtex/text.yml +0 -55
  465. data/spec/fixtures/vcr_cassettes/Bolognese_Metadata/write_metadata_as_bibtex/with_data_citation.yml +0 -55
  466. data/spec/fixtures/vcr_cassettes/Bolognese_Metadata/write_metadata_as_bibtex/with_pages.yml +0 -52
  467. data/spec/fixtures/vcr_cassettes/Bolognese_Metadata/write_metadata_as_citation/Dataset.yml +0 -55
  468. data/spec/fixtures/vcr_cassettes/Bolognese_Metadata/write_metadata_as_citation/Journal_article.yml +0 -55
  469. data/spec/fixtures/vcr_cassettes/Bolognese_Metadata/write_metadata_as_citation/Journal_article_vancouver_style.yml +0 -55
  470. data/spec/fixtures/vcr_cassettes/Bolognese_Metadata/write_metadata_as_citation/Missing_author.yml +0 -49
  471. data/spec/fixtures/vcr_cassettes/Bolognese_Metadata/write_metadata_as_citation/interactive_resource_without_dates.yml +0 -55
  472. data/spec/fixtures/vcr_cassettes/Bolognese_Metadata/write_metadata_as_citation/software_w/version.yml +0 -55
  473. data/spec/fixtures/vcr_cassettes/Bolognese_Metadata/write_metadata_as_citeproc/Another_dataset.yml +0 -55
  474. data/spec/fixtures/vcr_cassettes/Bolognese_Metadata/write_metadata_as_citeproc/BlogPosting.yml +0 -55
  475. data/spec/fixtures/vcr_cassettes/Bolognese_Metadata/write_metadata_as_citeproc/BlogPosting_schema_org.yml +0 -115
  476. data/spec/fixtures/vcr_cassettes/Bolognese_Metadata/write_metadata_as_citeproc/Dataset.yml +0 -55
  477. data/spec/fixtures/vcr_cassettes/Bolognese_Metadata/write_metadata_as_citeproc/container_title.yml +0 -55
  478. data/spec/fixtures/vcr_cassettes/Bolognese_Metadata/write_metadata_as_citeproc/interactive_resource_without_dates.yml +0 -55
  479. data/spec/fixtures/vcr_cassettes/Bolognese_Metadata/write_metadata_as_citeproc/journal_article.yml +0 -55
  480. data/spec/fixtures/vcr_cassettes/Bolognese_Metadata/write_metadata_as_citeproc/keywords_subject_scheme.yml +0 -55
  481. data/spec/fixtures/vcr_cassettes/Bolognese_Metadata/write_metadata_as_citeproc/maremma.yml +0 -75
  482. data/spec/fixtures/vcr_cassettes/Bolognese_Metadata/write_metadata_as_citeproc/missing_creator.yml +0 -49
  483. data/spec/fixtures/vcr_cassettes/Bolognese_Metadata/write_metadata_as_citeproc/multiple_abstracts.yml +0 -55
  484. data/spec/fixtures/vcr_cassettes/Bolognese_Metadata/write_metadata_as_citeproc/organization_author.yml +0 -52
  485. data/spec/fixtures/vcr_cassettes/Bolognese_Metadata/write_metadata_as_citeproc/software.yml +0 -55
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  487. data/spec/fixtures/vcr_cassettes/Bolognese_Metadata/write_metadata_as_citeproc/with_only_first_page.yml +0 -50
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  489. data/spec/fixtures/vcr_cassettes/Bolognese_Metadata/write_metadata_as_codemeta/SoftwareSourceCode_DataCite.yml +0 -55
  490. data/spec/fixtures/vcr_cassettes/Bolognese_Metadata/write_metadata_as_codemeta/SoftwareSourceCode_DataCite_check_codemeta_v2.yml +0 -55
  491. data/spec/fixtures/vcr_cassettes/Bolognese_Metadata/write_metadata_as_crosscite/datacite_database_attributes.yml +0 -55
  492. data/spec/fixtures/vcr_cassettes/Bolognese_Metadata/write_metadata_as_crosscite/maremma.yml +0 -75
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  494. data/spec/fixtures/vcr_cassettes/Bolognese_Metadata/write_metadata_as_crosscite/with_data_citation.yml +0 -55
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  496. data/spec/fixtures/vcr_cassettes/Bolognese_Metadata/write_metadata_as_crossref/from_DataCite.yml +0 -55
  497. data/spec/fixtures/vcr_cassettes/Bolognese_Metadata/write_metadata_as_csv/climate_data.yml +0 -55
  498. data/spec/fixtures/vcr_cassettes/Bolognese_Metadata/write_metadata_as_csv/maremma.yml +0 -75
  499. data/spec/fixtures/vcr_cassettes/Bolognese_Metadata/write_metadata_as_csv/text.yml +0 -55
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  501. data/spec/fixtures/vcr_cassettes/Bolognese_Metadata/write_metadata_as_csv/with_pages.yml +0 -52
  502. data/spec/fixtures/vcr_cassettes/Bolognese_Metadata/write_metadata_as_datacite_json/maremma.yml +0 -75
  503. data/spec/fixtures/vcr_cassettes/Bolognese_Metadata/write_metadata_as_datacite_json/with_ORCID_ID.yml +0 -52
  504. data/spec/fixtures/vcr_cassettes/Bolognese_Metadata/write_metadata_as_datacite_json/with_data_citation.yml +0 -55
  505. data/spec/fixtures/vcr_cassettes/Bolognese_Metadata/write_metadata_as_datacite_json/with_data_citation_schema_org.yml +0 -117
  506. data/spec/fixtures/vcr_cassettes/Bolognese_Metadata/write_metadata_as_datacite_xml/DOI_not_found.yml +0 -51
  507. data/spec/fixtures/vcr_cassettes/Bolognese_Metadata/write_metadata_as_datacite_xml/Dataset_in_schema_4_0.yml +0 -55
  508. data/spec/fixtures/vcr_cassettes/Bolognese_Metadata/write_metadata_as_datacite_xml/Text_pass-thru.yml +0 -55
  509. data/spec/fixtures/vcr_cassettes/Bolognese_Metadata/write_metadata_as_datacite_xml/Text_pass-thru_with_doi_in_options.yml +0 -55
  510. data/spec/fixtures/vcr_cassettes/Bolognese_Metadata/write_metadata_as_datacite_xml/maremma.yml +0 -75
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  513. data/spec/fixtures/vcr_cassettes/Bolognese_Metadata/write_metadata_as_datacite_xml/with_data_citation_schema_org.yml +0 -115
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  516. data/spec/fixtures/vcr_cassettes/Bolognese_Metadata/write_metadata_as_jats_xml/Dataset_in_schema_4_0.yml +0 -55
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  535. data/spec/fixtures/vcr_cassettes/Bolognese_Metadata/write_metadata_as_ris/keywords_with_subject_scheme.yml +0 -55
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  538. data/spec/fixtures/vcr_cassettes/Bolognese_Metadata/write_metadata_as_schema_org/Funding.yml +0 -106
  539. data/spec/fixtures/vcr_cassettes/Bolognese_Metadata/write_metadata_as_schema_org/Funding_OpenAIRE.yml +0 -106
  540. data/spec/fixtures/vcr_cassettes/Bolognese_Metadata/write_metadata_as_schema_org/Schema_org_JSON.yml +0 -55
  541. data/spec/fixtures/vcr_cassettes/Bolognese_Metadata/write_metadata_as_schema_org/Schema_org_JSON_Cyark.yml +0 -106
  542. data/spec/fixtures/vcr_cassettes/Bolognese_Metadata/write_metadata_as_schema_org/Schema_org_JSON_IsSupplementTo.yml +0 -106
  543. data/spec/fixtures/vcr_cassettes/Bolognese_Metadata/write_metadata_as_schema_org/Schema_org_JSON_isReferencedBy.yml +0 -55
  544. data/spec/fixtures/vcr_cassettes/Bolognese_Metadata/write_metadata_as_schema_org/alternate_identifiers.yml +0 -55
  545. data/spec/fixtures/vcr_cassettes/Bolognese_Metadata/write_metadata_as_schema_org/data_catalog.yml +0 -55
  546. data/spec/fixtures/vcr_cassettes/Bolognese_Metadata/write_metadata_as_schema_org/geo_location_box.yml +0 -55
  547. data/spec/fixtures/vcr_cassettes/Bolognese_Metadata/write_metadata_as_schema_org/interactive_resource_without_dates.yml +0 -55
  548. data/spec/fixtures/vcr_cassettes/Bolognese_Metadata/write_metadata_as_schema_org/journal_article.yml +0 -55
  549. data/spec/fixtures/vcr_cassettes/Bolognese_Metadata/write_metadata_as_schema_org/maremma_schema_org_JSON.yml +0 -75
  550. data/spec/fixtures/vcr_cassettes/Bolognese_Metadata/write_metadata_as_schema_org/series_information.yml +0 -55
  551. data/spec/fixtures/vcr_cassettes/Bolognese_Metadata/write_metadata_as_schema_org/subject_scheme.yml +0 -55
  552. data/spec/fixtures/vcr_cassettes/Bolognese_Metadata/write_metadata_as_schema_org/subject_scheme_multiple_keywords.yml +0 -55
  553. data/spec/fixtures/vcr_cassettes/Bolognese_Metadata/write_metadata_as_turtle/BlogPosting.yml +0 -55
  554. data/spec/fixtures/vcr_cassettes/Bolognese_Metadata/write_metadata_as_turtle/BlogPosting_schema_org.yml +0 -117
  555. data/spec/fixtures/vcr_cassettes/Bolognese_Metadata/write_metadata_as_turtle/Dataset.yml +0 -55
  556. data/spec/fixtures/vcr_cassettes/Bolognese_Metadata/write_metadata_as_turtle/journal_article.yml +0 -55
  557. data/spec/fixtures/vcr_cassettes/Bolognese_Metadata/write_metadata_as_turtle/with_pages.yml +0 -52
  558. data/spec/fixtures/vivli.xml +0 -1
  559. data/spec/metadata_spec.rb +0 -165
  560. data/spec/readers/bibtex_reader_spec.rb +0 -65
  561. data/spec/readers/citeproc_reader_spec.rb +0 -64
  562. data/spec/readers/codemeta_reader_spec.rb +0 -138
  563. data/spec/readers/crosscite_reader_spec.rb +0 -43
  564. data/spec/readers/crossref_reader_spec.rb +0 -1102
  565. data/spec/readers/datacite_json_reader_spec.rb +0 -82
  566. data/spec/readers/datacite_reader_spec.rb +0 -1812
  567. data/spec/readers/npm_reader_spec.rb +0 -68
  568. data/spec/readers/ris_reader_spec.rb +0 -78
  569. data/spec/readers/schema_org_reader_spec.rb +0 -344
  570. data/spec/spec_helper.rb +0 -95
  571. data/spec/utils_spec.rb +0 -666
  572. data/spec/writers/bibtex_writer_spec.rb +0 -195
  573. data/spec/writers/citation_writer_spec.rb +0 -61
  574. data/spec/writers/citeproc_writer_spec.rb +0 -290
  575. data/spec/writers/codemeta_writer_spec.rb +0 -45
  576. data/spec/writers/crosscite_writer_spec.rb +0 -129
  577. data/spec/writers/crossref_writer_spec.rb +0 -21
  578. data/spec/writers/csv_writer_spec.rb +0 -94
  579. data/spec/writers/datacite_json_writer_spec.rb +0 -112
  580. data/spec/writers/datacite_writer_spec.rb +0 -507
  581. data/spec/writers/jats_writer_spec.rb +0 -208
  582. data/spec/writers/rdf_xml_writer_spec.rb +0 -93
  583. data/spec/writers/ris_writer_spec.rb +0 -207
  584. data/spec/writers/schema_org_writer_spec.rb +0 -382
  585. data/spec/writers/turtle_writer_spec.rb +0 -102
data/spec/fixtures/datacite-geolocation-empty.xml DELETED
@@ -1,159 +0,0 @@
1
- <?xml version="1.0" encoding="utf-8"?>
2
- <resource xmlns="http://datacite.org/schema/kernel-4" xmlns:xsi="http://www.w3.org/2001/XMLSchema-instance" xsi:schemaLocation="http://datacite.org/schema/kernel-4 http://schema.datacite.org/meta/kernel-4/metadata.xsd">
3
- <identifier identifierType="DOI">10.1594/IEDA/111185</identifier>
4
- <creators>
5
- <creator>
6
- <creatorName>Carlos P Carvajal</creatorName>
7
- <givenName>Carlos</givenName>
8
- <familyName>Carvajal</familyName>
9
- </creator>
10
- <creator>
11
- <creatorName>Gerilyn S Soreghan</creatorName>
12
- <givenName>Gerilyn</givenName>
13
- <familyName>Soreghan</familyName>
14
- </creator>
15
- <creator>
16
- <creatorName>Peter E Isaacson</creatorName>
17
- <givenName>Peter</givenName>
18
- <familyName>Isaacson</familyName>
19
- </creator>
20
- </creators>
21
- <titles>
22
- <title>Geochemical and grain-size analyses of atmospheric dusts from Pennsylvanian carbonates of the Copacabana Formation (Madre de Dios Basin, Bolivia)</title>
23
- </titles>
24
- <publisher>EarthChem</publisher>
25
- <publicationYear>2018</publicationYear>
26
- <subjects>
27
- <subject subjectScheme="coverage scope">Global</subject>
28
- </subjects>
29
- <dates>
30
- <date dateType="Available">2018-06-21</date>
31
- <date dateType="Created">2018-06-20</date>
32
- </dates>
33
- <language>en</language>
34
- <resourceType resourceTypeGeneral="Dataset">Dataset</resourceType>
35
- <alternateIdentifiers>
36
- <alternateIdentifier alternateIdentifierType="URL">http://www.earthchem.org/library/browse/view?id=1185</alternateIdentifier>
37
- </alternateIdentifiers>
38
- <relatedIdentifiers>
39
- <relatedIdentifier relatedIdentifierType="DOI" relationType="IsReferencedBy">10.1016/j.gr.2018.02.007</relatedIdentifier>
40
- <relatedIdentifier relatedIdentifierType="IGSN" relationType="References">IEBMM0001</relatedIdentifier>
41
- <relatedIdentifier relatedIdentifierType="IGSN" relationType="References">IEBMM0002</relatedIdentifier>
42
- <relatedIdentifier relatedIdentifierType="IGSN" relationType="References">IEBMM0003</relatedIdentifier>
43
- <relatedIdentifier relatedIdentifierType="IGSN" relationType="References">IEBMM0004</relatedIdentifier>
44
- <relatedIdentifier relatedIdentifierType="IGSN" relationType="References">IEBMM0005</relatedIdentifier>
45
- <relatedIdentifier relatedIdentifierType="IGSN" relationType="References">IEBMM0006</relatedIdentifier>
46
- <relatedIdentifier relatedIdentifierType="IGSN" relationType="References">IEBMM0007</relatedIdentifier>
47
- <relatedIdentifier relatedIdentifierType="IGSN" relationType="References">IEBMM0008</relatedIdentifier>
48
- <relatedIdentifier relatedIdentifierType="IGSN" relationType="References">IEBMM0009</relatedIdentifier>
49
- <relatedIdentifier relatedIdentifierType="IGSN" relationType="References">IEBMM000A</relatedIdentifier>
50
- <relatedIdentifier relatedIdentifierType="IGSN" relationType="References">IEBMM000B</relatedIdentifier>
51
- <relatedIdentifier relatedIdentifierType="IGSN" relationType="References">IEBMM000C</relatedIdentifier>
52
- <relatedIdentifier relatedIdentifierType="IGSN" relationType="References">IEBMM000D</relatedIdentifier>
53
- <relatedIdentifier relatedIdentifierType="IGSN" relationType="References">IEBMM000E</relatedIdentifier>
54
- <relatedIdentifier relatedIdentifierType="IGSN" relationType="References">IEBMM000F</relatedIdentifier>
55
- <relatedIdentifier relatedIdentifierType="IGSN" relationType="References">IEBMM000G</relatedIdentifier>
56
- <relatedIdentifier relatedIdentifierType="IGSN" relationType="References">IEBMM000H</relatedIdentifier>
57
- <relatedIdentifier relatedIdentifierType="IGSN" relationType="References">IEBMM000I</relatedIdentifier>
58
- <relatedIdentifier relatedIdentifierType="IGSN" relationType="References">IEBMM000J</relatedIdentifier>
59
- <relatedIdentifier relatedIdentifierType="IGSN" relationType="References">IEBMM000K</relatedIdentifier>
60
- <relatedIdentifier relatedIdentifierType="IGSN" relationType="References">IEBMM000L</relatedIdentifier>
61
- <relatedIdentifier relatedIdentifierType="IGSN" relationType="References">IEBMM000M</relatedIdentifier>
62
- <relatedIdentifier relatedIdentifierType="IGSN" relationType="References">IEBMM000N</relatedIdentifier>
63
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- <identifier identifierType="DOI">10.5438/4K3M-NYVG</identifier>
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- <creatorName>Fenner, Martin</creatorName>
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- <title>Eating your own Dog Food</title>
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- <date dateType="Created">2016-12-20</date>
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- <date dateType="Issued">2016-12-20</date>
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- <description descriptionType="Abstract">Eating your own dog food is a slang term to
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- describe that an organization should itself use the products and services it provides.
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- For DataCite this means that we should use DOIs with appropriate metadata and strategies for long-term preservation for...
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- <identifier identifierType="DOI">10.1594/GFZ.SDDB.1102</identifier>
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- <creator>
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- <creatorName>Dannowski, Grit</creatorName>
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- <creatorName>Schrötter, Jörg</creatorName>
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- <creatorName>Erbas, Kemal</creatorName>
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- <creatorName>Huenges, Ernst</creatorName>
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- <title>Borehole Temperature of HSDP-2-A on 07/05/1999</title>
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- <publisher>Deutsches GeoForschungsZentrum GFZ</publisher>
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- <publicationYear>2007</publicationYear>
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- <subjects>
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- <subject subjectScheme="project">Hawaii Scientific Drilling Project</subject>
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- <subject subjectScheme="platform">Land based</subject>
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- <subject subjectScheme="keyword">Distributed Optical Fibre Temperature Sensing</subject>
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- <subject subjectScheme="keyword">temperature_07/05/99_02:44am</subject>
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- <description descriptionType="Abstract">The temperature pattern is attributed to a superposition of thermal and hydraulic processes. In the deeper borehole (HSDP-2, depth 3.1 km) detailed temperature monitoring was performed. Temperature measurements reveal two different thermal regimes. The upper part is characterised by cold temperatures and a negative temperature gradient similar to those observed in the shallow pilot borehole. Below 1100 m, increasing temperatures are observed. Different processes, such as topographically driven groundwater flow, ingress of salt water and conductive previous termheatnext term flow are investigated by numerical modeling. A pure conductive scenario fails to match the temperature measurements, implying that both borehole sections are overprinted by advective conditions. Coupled fluid and previous termheatnext term flow modeling with solute transport yield results that agree with observed temperatures. These data were taken at 07/05/1999 from 02.30 a.m. to 07.30 a.m.</description>
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