bolognese 2.2.0 → 2.6.1

data/spec/writers/datacite_writer_spec.rb

@@ -1,507 +0,0 @@
-# frozen_string_literal: true
-
-require 'spec_helper'
-
-describe Bolognese::Metadata, vcr: true do
-  context "write metadata as datacite xml" do
-    it "with data citation" do
-      input = "10.7554/eLife.01567"
-      subject = Bolognese::Metadata.new(input: input, from: "crossref")
-      expect(subject.valid?).to be true
-      datacite = Maremma.from_xml(subject.datacite).fetch("resource", {})
-      expect(datacite.dig("resourceType", "resourceTypeGeneral")).to eq("JournalArticle")
-      expect(datacite.dig("titles", "title")).to eq("Automated quantitative histology reveals vascular morphodynamics during Arabidopsis hypocotyl secondary growth")
-      expect(datacite.dig("relatedIdentifiers", "relatedIdentifier").length).to eq(27)
-      expect(datacite.dig("relatedIdentifiers", "relatedIdentifier").first).to eq("relatedIdentifierType"=>"ISSN", "relationType"=>"IsPartOf", "__content__"=>"2050-084X", "resourceTypeGeneral"=>"Collection")
-      expect(datacite.dig("relatedIdentifiers", "relatedIdentifier")[1]).to eq("relatedIdentifierType"=>"DOI", "relationType"=>"References", "__content__"=>"10.1038/nature02100")
-      expect(datacite.dig("rightsList", "rights")).to eq("rightsURI"=>"https://creativecommons.org/licenses/by/3.0/legalcode", "rightsIdentifier"=>"cc-by-3.0", "rightsIdentifierScheme"=>"SPDX", "schemeURI"=>"https://spdx.org/licenses/", "__content__"=>"Creative Commons Attribution 3.0 Unported")
-      expect(datacite.dig("fundingReferences", "fundingReference").count).to eq(4)
-      expect(datacite.dig("fundingReferences", "fundingReference").last).to eq("funderName"=>"University of Lausanne", "funderIdentifier" => {"funderIdentifierType"=>"Crossref Funder ID", "__content__"=>"https://doi.org/10.13039/501100006390"})
-      expect(datacite.dig("publisher")).to eq("eLife Sciences Publications, Ltd")
-    end
-
-    it "with ORCID ID" do
-      input = "https://doi.org/10.1155/2012/291294"
-      subject = Bolognese::Metadata.new(input: input, from: "crossref")
-      expect(subject.valid?).to be true
-      datacite = Maremma.from_xml(subject.datacite).fetch("resource", {})
-      expect(datacite.dig("resourceType", "resourceTypeGeneral")).to eq("JournalArticle")
-      expect(datacite.dig("creators", "creator").count).to eq(7)
-      expect(datacite.dig("creators", "creator")[2]).to eq("creatorName" => {"__content__"=>"Hernandez, Beatriz", "nameType"=>"Personal"},
-        "familyName" => "Hernandez",
-        "givenName" => "Beatriz",
-        "affiliation" => ["War Related Illness and Injury Study Center (WRIISC) and Mental Illness Research Education and Clinical Center (MIRECC), Department of Veterans Affairs, Palo Alto, CA 94304, USA", "Department of Psychiatry and Behavioral Sciences, Stanford University School of Medicine, Stanford, CA 94304, USA"],
-        "nameIdentifier" => {"nameIdentifierScheme"=>"ORCID", "schemeURI"=>"https://orcid.org", "__content__"=>"https://orcid.org/0000-0003-2043-4925"})
-      expect(datacite.dig("publisher")).to eq("Hindawi Limited")
-    end
-
-    it "with editor" do
-      input = "https://doi.org/10.1371/journal.pone.0000030"
-      subject = Bolognese::Metadata.new(input: input, from: "crossref")
-      expect(subject.valid?).to be true
-      datacite = Maremma.from_xml(subject.datacite).fetch("resource", {})
-      expect(datacite.dig("contributors", "contributor")).to eq("contributorName"=>{"__content__"=>"Janbon, Guilhem", "nameType"=>"Personal"}, "contributorType"=>"Editor", "familyName"=>"Janbon", "givenName"=>"Guilhem")
-      expect(datacite.dig("publisher")).to eq("Public Library of Science (PLoS)")
-    end
-
-    it "Crossref DOI" do
-      input = fixture_path + "crossref.bib"
-      subject = Bolognese::Metadata.new(input: input, from: "bibtex")
-      expect(subject.valid?).to be true
-      datacite = Maremma.from_xml(subject.datacite).fetch("resource", {})
-      expect(datacite.dig("resourceType", "resourceTypeGeneral")).to eq("JournalArticle")
-      expect(datacite.dig("titles", "title")).to eq("Automated quantitative histology reveals vascular morphodynamics during Arabidopsis hypocotyl secondary growth")
-      expect(datacite.dig("descriptions", "description").first).to eq("__content__"=>"eLife, 3", "descriptionType"=>"SeriesInformation")
-      expect(datacite.dig("descriptions", "description", 1, "__content__")).to start_with("Among various advantages, their small size makes model organisms preferred subjects of investigation.")
-      expect(datacite.dig("creators", "creator").count).to eq(5)
-      expect(datacite.dig("creators", "creator").first).to eq("creatorName"=>{"__content__"=>"Sankar, Martial", "nameType"=>"Personal"}, "familyName"=>"Sankar", "givenName"=>"Martial")
-      expect(datacite.dig("publisher")).to eq("{eLife} Sciences Organisation, Ltd.")
-    end
-
-    it "BlogPosting Citeproc JSON" do
-      input = fixture_path + "citeproc.json"
-      subject = Bolognese::Metadata.new(input: input, from: "citeproc")
-      expect(subject.valid?).to be true
-      datacite = Maremma.from_xml(subject.datacite).fetch("resource", {})
-      expect(datacite.dig("resourceType", "resourceTypeGeneral")).to eq("Text")
-      expect(datacite.dig("titles", "title")).to eq("Eating your own Dog Food")
-      expect(datacite.dig("descriptions", "description").first).to eq("__content__"=>"DataCite Blog", "descriptionType"=>"SeriesInformation")
-      expect(datacite.dig("descriptions", "description", 1, "__content__")).to start_with("Eating your own dog food")
-      expect(datacite.dig("creators", "creator")).to eq("creatorName"=>"Fenner, Martin", "familyName"=>"Fenner", "givenName"=>"Martin")
-      expect(datacite.dig("publisher")).to eq("DataCite")
-    end
-
-    it "rdataone" do
-      input = fixture_path + 'codemeta.json'
-      subject = Bolognese::Metadata.new(input: input, from: "codemeta")
-      expect(subject.valid?).to be true
-      datacite = Maremma.from_xml(subject.datacite).fetch("resource", {})
-      expect(datacite.dig("titles", "title")).to eq("R Interface to the DataONE REST API")
-      expect(datacite.dig("creators", "creator")).to eq([{"affiliation"=>"NCEAS", "creatorName"=>{"__content__"=>"Jones, Matt", "nameType"=>"Personal"},
-                                                          "givenName"=>"Matt",
-                                                          "familyName"=>"Jones",
-                                                          "nameIdentifier"=>
-                                                         {"nameIdentifierScheme"=>"ORCID",
-                                                          "schemeURI"=>"https://orcid.org",
-                                                          "__content__"=>"https://orcid.org/0000-0003-0077-4738"}},
-                                                         {"affiliation"=>"NCEAS", "creatorName"=>{"__content__"=>"Slaughter, Peter", "nameType"=>"Personal"},
-                                                           "givenName"=>"Peter",
-                                                           "familyName"=>"Slaughter",
-                                                          "nameIdentifier"=>
-                                                         {"nameIdentifierScheme"=>"ORCID",
-                                                          "schemeURI"=>"https://orcid.org",
-                                                          "__content__"=>"https://orcid.org/0000-0002-2192-403X"}},
-                                                         {"creatorName"=>{"__content__"=>"University Of California, Santa Barbara", "nameType"=>"Organizational"}}])
-      expect(datacite.fetch("version")).to eq("2.0.0")
-      expect(datacite.dig("publisher")).to eq("https://cran.r-project.org")
-    end
-
-    it "rdataone and codemeta_v2" do
-      input = fixture_path + 'codemeta_v2.json'
-      subject = Bolognese::Metadata.new(input: input, from: "codemeta")
-      expect(subject.valid?).to be true
-      datacite = Maremma.from_xml(subject.datacite).fetch("resource", {})
-      expect(datacite.dig("titles", "title")).to eq("R Interface to the DataONE REST API")
-      expect(datacite.dig("creators", "creator")).to eq([{"affiliation"=>"NCEAS", "creatorName"=>{"__content__"=>"Jones, Matt", "nameType"=>"Personal"},
-                                                          "givenName"=>"Matt",
-                                                          "familyName"=>"Jones",
-                                                          "nameIdentifier"=>
-                                                         {"nameIdentifierScheme"=>"ORCID",
-                                                          "schemeURI"=>"https://orcid.org",
-                                                          "__content__"=>"https://orcid.org/0000-0003-0077-4738"}},
-                                                         {"affiliation"=>"NCEAS", "creatorName"=>{"__content__"=>"Slaughter, Peter", "nameType"=>"Personal"},
-                                                           "givenName"=>"Peter",
-                                                           "familyName"=>"Slaughter",
-                                                          "nameIdentifier"=>
-                                                         {"nameIdentifierScheme"=>"ORCID",
-                                                          "schemeURI"=>"https://orcid.org",
-                                                          "__content__"=>"https://orcid.org/0000-0002-2192-403X"}},
-                                                         {"creatorName"=>{"__content__"=>"University Of California, Santa Barbara", "nameType"=>"Organizational"}}])
-      expect(datacite.fetch("version")).to eq("2.0.0")
-      expect(datacite.dig("publisher")).to eq("https://cran.r-project.org")
-    end
-
-    it "maremma" do
-      input = "https://github.com/datacite/maremma"
-      subject = Bolognese::Metadata.new(input: input, from: "codemeta")
-      expect(subject.valid?).to be true
-      datacite = Maremma.from_xml(subject.datacite).fetch("resource", {})
-      expect(datacite.dig("titles", "title")).to eq("Maremma: a Ruby library for simplified network calls")
-      expect(datacite.dig("creators", "creator")).to eq("affiliation"=>"DataCite", "creatorName"=> {"__content__"=>"Fenner, Martin", "nameType"=>"Personal"}, "givenName"=>"Martin", "familyName"=>"Fenner", "nameIdentifier"=>{"__content__"=>"https://orcid.org/0000-0003-0077-4738", "nameIdentifierScheme"=>"ORCID", "schemeURI"=>"https://orcid.org"})
-      expect(datacite.dig("publisher")).to eq("DataCite")
-    end
-
-    it "with version" do
-      input = "https://doi.org/10.5281/zenodo.28518"
-      subject = Bolognese::Metadata.new(input: input, from: "datacite", regenerate: true)
-      expect(subject.valid?).to be true
-      expect(subject.id).to eq("https://doi.org/10.5281/zenodo.28518")
-      expect(subject.identifiers).to eq([{"identifier"=>"https://zenodo.org/record/28518", "identifierType"=>"URL"}])
-      expect(subject.types).to eq("bibtex" => "misc",
-        "citeproc" => "article",
-        "resourceTypeGeneral" => "Software",
-        "ris" => "COMP",
-        "schemaOrg" => "SoftwareSourceCode")
-      expect(subject.creators.length).to eq(2)
-      expect(subject.creators.first).to eq("affiliation" => [{"name"=>"University of Washington"}],
-        "familyName" => "Vanderplas",
-        "givenName" => "Jake",
-        "name" => "Vanderplas, Jake",
-        "nameIdentifiers" => [],
-        "nameType" => "Personal")
-      expect(subject.titles).to eq([{"title"=>"Supersmoother: Minor Bug Fix Release"}])
-      expect(subject.rights_list).to eq([{"rights"=>"Open Access", "rightsUri"=>"info:eu-repo/semantics/openAccess"}])
-      expect(subject.dates).to eq([{"date"=>"2015-08-19", "dateType"=>"Issued"}])
-      expect(subject.publication_year).to eq("2015")
-      expect(subject.version_info).to eq("v0.3.2")
-      expect(subject.publisher).to eq({"name"=>"Zenodo"})
-      expect(subject.agency).to eq("datacite")
-      expect(subject.schema_version).to eq("http://datacite.org/schema/kernel-4")
-      expect(subject.datacite).to include("<version>v0.3.2</version>")
-    end
-
-    it "Text pass-thru" do
-      input = "https://doi.org/10.23640/07243.5153971"
-      subject = Bolognese::Metadata.new(input: input, from: "datacite")
-      expect(subject.valid?).to be true
-      expect(subject.id).to eq("https://doi.org/10.23640/07243.5153971")
-      expect(subject.types).to eq("bibtex"=>"article", "citeproc"=>"article-journal", "resourceType"=>"Paper", "resourceTypeGeneral"=>"Text", "ris"=>"RPRT", "schemaOrg"=>"ScholarlyArticle")
-      expect(subject.creators.length).to eq(20)
-      expect(subject.creators.first).to eq("nameType"=>"Personal", "familyName" => "Paglione", "givenName" => "Laura", "nameIdentifiers" => [{"nameIdentifier"=>"https://orcid.org/0000-0003-3188-6273", "nameIdentifierScheme"=>"ORCID", "schemeUri"=>"https://orcid.org"}], "name" => "Paglione, Laura", "affiliation" => [])
-      expect(subject.titles).to eq([{"title"=>"Recommendation of: ORCID Works Metadata Working Group"}])
-      expect(subject.rights_list).to eq([{"rights"=>"Creative Commons Zero v1.0 Universal",
-        "rightsIdentifier"=>"cc0-1.0",
-        "rightsIdentifierScheme"=>"SPDX",
-        "rightsUri"=>"https://creativecommons.org/publicdomain/zero/1.0/legalcode",
-        "schemeUri"=>"https://spdx.org/licenses/"}])
-      expect(subject.dates).to eq([{"date"=>"2017-06-28", "dateType"=>"Created"}, {"date"=>"2017-06-28", "dateType"=>"Updated"}, {"date"=>"2017", "dateType"=>"Issued"}])
-      expect(subject.publication_year).to eq("2017")
-      expect(subject.publisher).to eq({"name"=>"Figshare"})
-      expect(subject.subjects).to eq([{"subject"=>"Information Systems"},
-       {"schemeUri"=>"http://www.oecd.org/science/inno/38235147.pdf",
-        "subject"=>"FOS: Computer and information sciences",
-        "subjectScheme"=>"Fields of Science and Technology (FOS)"}])
-      expect(subject.agency).to eq("datacite")
-      expect(subject.schema_version).to eq("http://datacite.org/schema/kernel-3")
-      expect(subject.datacite).to end_with("</resource>")
-    end
-
-    it "Text pass-thru with doi in options" do
-      input = "https://doi.org/10.23640/07243.5153971"
-      subject = Bolognese::Metadata.new(input: input, from: "datacite", doi: "10.5072/07243.5153971")
-      expect(subject.valid?).to be true
-      expect(subject.id).to eq("https://doi.org/10.5072/07243.5153971")
-      expect(subject.types).to eq("bibtex"=>"article", "citeproc"=>"article-journal", "resourceType"=>"Paper", "resourceTypeGeneral"=>"Text", "ris"=>"RPRT", "schemaOrg"=>"ScholarlyArticle")
-      expect(subject.creators.length).to eq(20)
-      expect(subject.creators.first).to eq("nameType" => "Personal", "familyName" => "Paglione", "givenName" => "Laura", "name" => "Paglione, Laura", "nameIdentifiers" => [{"nameIdentifier"=>"https://orcid.org/0000-0003-3188-6273", "nameIdentifierScheme"=>"ORCID", "schemeUri"=>"https://orcid.org"}],"affiliation" => [])
-      expect(subject.titles).to eq([{"title"=>"Recommendation of: ORCID Works Metadata Working Group"}])
-      expect(subject.rights_list).to eq([{"rights"=>"Creative Commons Zero v1.0 Universal",
-        "rightsIdentifier"=>"cc0-1.0",
-        "rightsIdentifierScheme"=>"SPDX",
-        "rightsUri"=>"https://creativecommons.org/publicdomain/zero/1.0/legalcode",
-        "schemeUri"=>"https://spdx.org/licenses/"}])
-      expect(subject.dates).to eq([{"date"=>"2017-06-28", "dateType"=>"Created"}, {"date"=>"2017-06-28", "dateType"=>"Updated"}, {"date"=>"2017", "dateType"=>"Issued"}])
-      expect(subject.publication_year).to eq("2017")
-      expect(subject.publisher).to eq({"name"=>"Figshare"})
-      expect(subject.subjects).to eq([{"subject"=>"Information Systems"},
-       {"schemeUri"=>"http://www.oecd.org/science/inno/38235147.pdf",
-        "subject"=>"FOS: Computer and information sciences",
-        "subjectScheme"=>"Fields of Science and Technology (FOS)"}])
-      expect(subject.agency).to eq("datacite")
-      expect(subject.schema_version).to eq("http://datacite.org/schema/kernel-3")
-      expect(subject.datacite).to end_with("</resource>")
-    end
-
-    it "Dataset in schema 4.0" do
-      input = "https://doi.org/10.5061/DRYAD.8515"
-      subject = Bolognese::Metadata.new(input: input, from: "datacite", regenerate: true)
-      expect(subject.valid?).to be true
-      expect(subject.types).to eq("bibtex"=>"misc", "citeproc"=>"dataset", "resourceType"=>"dataset", "resourceTypeGeneral"=>"Dataset", "ris"=>"DATA", "schemaOrg"=>"Dataset")
-      expect(subject.creators.length).to eq(8)
-      expect(subject.creators.first).to eq("nameType" => "Personal", "name"=>"Ollomo, Benjamin", "givenName"=>"Benjamin", "familyName"=>"Ollomo", "nameIdentifiers"=>[], "affiliation" => [{"affiliationIdentifier"=>"https://ror.org/01wyqb997", "affiliationIdentifierScheme"=>"ROR", "name"=>"Centre International de Recherches Médicales de Franceville"}])
-      expect(subject.titles).to eq([{"title"=>"Data from: A new malaria agent in African hominids."}])
-      expect(subject.id).to eq("https://doi.org/10.5061/dryad.8515")
-      expect(subject.rights_list).to eq([{"rights"=>"Creative Commons Zero v1.0 Universal",
-        "rightsIdentifier"=>"cc0-1.0",
-        "rightsIdentifierScheme"=>"SPDX",
-        "rightsUri"=>"https://creativecommons.org/publicdomain/zero/1.0/legalcode",
-        "schemeUri"=>"https://spdx.org/licenses/"}])
-      expect(subject.dates).to eq([{"date"=>"2011-02-01T17:22:41Z", "dateType"=>"Available"}, {"date"=>"2011", "dateType"=>"Issued"}])
-      expect(subject.publication_year).to eq("2011")
-      expect(subject.related_identifiers.length).to eq(1)
-      expect(subject.related_identifiers.last).to eq("relatedIdentifier" => "10.1371/journal.ppat.1000446",
-        "relatedIdentifierType" => "DOI","relationType"=>"Cites")
-      expect(subject.publisher).to eq({"name"=>"Dryad"})
-      expect(subject.agency).to eq("datacite")
-      expect(subject.schema_version).to eq("http://datacite.org/schema/kernel-4")
-
-      datacite = Maremma.from_xml(subject.datacite).fetch("resource", {})
-      expect(datacite.fetch("xsi:schemaLocation", "").split(" ").first).to eq("http://datacite.org/schema/kernel-4")
-      expect(datacite.dig("publisher")).to eq("Dryad")
-    end
-
-    it "Affiliation" do
-      input = fixture_path + 'datacite-example-geolocation-2.xml'
-      doi = "10.6071/Z7WC73"
-      subject = Bolognese::Metadata.new(input: input, from: "datacite", regenerate: true)
-      expect(subject.valid?).to be true
-      expect(subject.types).to eq("bibtex"=>"misc", "citeproc"=>"dataset", "resourceType"=>"dataset", "resourceTypeGeneral"=>"Dataset", "ris"=>"DATA", "schemaOrg"=>"Dataset")
-      expect(subject.creators.length).to eq(6)
-      expect(subject.creators.first).to eq("affiliation"=>[{"name"=>"UC Merced"}, {"name"=>"NSF"}], "familyName"=>"Bales", "givenName"=>"Roger", "name"=>"Bales, Roger", "nameType"=>"Personal", "nameIdentifiers"=>[])
-      expect(subject.titles).to eq([{"title"=>"Southern Sierra Critical Zone Observatory (SSCZO), Providence Creek meteorological data, soil moisture and temperature, snow depth and air temperature"}])
-      expect(subject.id).to eq("https://doi.org/10.6071/z7wc73")
-      expect(subject.rights_list).to eq([{"rights"=>"Creative Commons Attribution 4.0 International",
-        "rightsIdentifier"=>"cc-by-4.0",
-        "rightsIdentifierScheme"=>"SPDX",
-        "rightsUri"=>"https://creativecommons.org/licenses/by/4.0/legalcode",
-        "schemeUri"=>"https://spdx.org/licenses/"}])
-      expect(subject.dates).to eq([{"date"=>"2014-10-17", "dateType"=>"Updated"}, {"date"=>"2016-03-14T17:02:02Z", "dateType"=>"Available"}, {"date"=>"2013", "dateType"=>"Issued"}])
-      expect(subject.publication_year).to eq("2013")
-      expect(subject.publisher).to eq({"name"=>"UC Merced"})
-      expect(subject.agency).to eq("datacite")
-      expect(subject.schema_version).to eq("http://datacite.org/schema/kernel-4")
-
-      datacite = Maremma.from_xml(subject.datacite).fetch("resource", {})
-      expect(datacite.fetch("xsi:schemaLocation", "").split(" ").first).to eq("http://datacite.org/schema/kernel-4")
-      expect(datacite.dig("creators", "creator", 0, "affiliation")).to eq(["UC Merced", "NSF"])
-      expect(datacite.dig("publisher")).to eq("UC Merced")
-    end
-
-    it "Schema 4.5 publisher with attributes" do
-      input = fixture_path + 'datacite-example-full-v4.5.xml'
-      doi = "10.82433/B09Z-4K37"
-      subject = Bolognese::Metadata.new(input: input, from: "datacite", regenerate: true)
-      expect(subject.valid?).to be true
-
-      datacite = Maremma.from_xml(subject.datacite).fetch("resource", {})
-      expect(datacite.fetch("xsi:schemaLocation", "").split(" ").first).to eq("http://datacite.org/schema/kernel-4")
-      expect(datacite.dig("publisher")).to eq(
-        {
-          "__content__" => "Example Publisher",
-          "publisherIdentifier" => "https://ror.org/04z8jg394",
-          "publisherIdentifierScheme" => "ROR",
-          "schemeURI" => "https://ror.org/",
-          "xml:lang" => "en",
-        }
-      )
-    end
-
-    it "Geolocations" do
-      input = fixture_path + 'datacite-example-full-v4.5.xml'
-      doi = "10.82433/B09Z-4K37"
-      subject = Bolognese::Metadata.new(input: input, from: "datacite", regenerate: true)
-      expect(subject.valid?).to be true
-
-      datacite = Maremma.from_xml(subject.datacite).fetch("resource", {})
-      expect(datacite.dig("geoLocations", "geoLocation", "geoLocationPlace")).to eq("Vancouver, British Columbia, Canada")
-      expect(datacite.dig("geoLocations", "geoLocation", "geoLocationPoint")).to eq(
-        {
-          "pointLatitude" => "49.2827",
-          "pointLongitude" => "-123.1207",
-        }
-      )
-      expect(datacite.dig("geoLocations", "geoLocation", "geoLocationBox")).to eq(
-        {
-          "westBoundLongitude" => "-123.27",
-          "eastBoundLongitude" => "-123.02",
-          "southBoundLatitude" => "49.195",
-          "northBoundLatitude" => "49.315",
-        }
-      )
-      expect(datacite.dig("geoLocations", "geoLocation", "geoLocationPolygon")).to eq(
-        { 
-          "polygonPoint" => [
-            {
-              "pointLatitude" => "41.991",
-              "pointLongitude" => "-71.032",
-            },
-            {
-              "pointLatitude" => "42.893",
-              "pointLongitude" => "-69.622",
-            },
-            {
-              "pointLatitude" => "41.991",
-              "pointLongitude" => "-68.211",
-            },
-            {
-              "pointLatitude" => "41.090",
-              "pointLongitude" => "-69.622",
-            },
-            {
-              "pointLatitude" => "41.991",
-              "pointLongitude" => "-71.032",
-            },
-          ]
-        }
-      )
-    end
-
-    it "with data citation schema.org" do
-      input = "https://blog.datacite.org/eating-your-own-dog-food/"
-      subject = Bolognese::Metadata.new(input: input, from: "schema_org")
-      expect(subject.valid?).to be true
-      datacite = Maremma.from_xml(subject.datacite).fetch("resource", {})
-      expect(datacite.dig("titles", "title")).to eq("Eating your own Dog Food")
-      expect(datacite.dig("relatedIdentifiers", "relatedIdentifier").count).to eq(3)
-      expect(datacite.dig("relatedIdentifiers", "relatedIdentifier").first).to eq("__content__"=>"10.5438/0000-00ss", "relatedIdentifierType"=>"DOI", "relationType"=>"IsPartOf", "resourceTypeGeneral"=>"Text")
-    end
-
-    it "DOI not found" do
-      input = "https://doi.org/10.4124/05F6C379-DD68-4CDB-880D-33D3E9576D52/1"
-      subject = Bolognese::Metadata.new(input: input, from: "datacite")
-      expect(subject.valid?).to be false
-      expect(subject.id).to eq("https://doi.org/10.4124/05f6c379-dd68-4cdb-880d-33d3e9576d52/1")
-      expect(subject.doi).to eq("10.4124/05f6c379-dd68-4cdb-880d-33d3e9576d52/1")
-      expect(subject.agency).to eq("datacite")
-      expect(subject.state).to eq("not_found")
-      datacite = Maremma.from_xml(subject.datacite).fetch("resource", {})
-      expect(datacite["identifier"]).to eq("identifierType"=>"DOI", "__content__"=>"10.4124/05f6c379-dd68-4cdb-880d-33d3e9576d52/1")
-      expect(datacite["xmlns"]).to eq("http://datacite.org/schema/kernel-4")
-    end
-
-    it "no input" do
-      input = nil
-      subject = Bolognese::Metadata.new(input: input, from: "datacite", doi: "10.4124/05f6c379-dd68-4cdb-880d-33d3e9576d52/1")
-      expect(subject.valid?).to be false
-      datacite = Maremma.from_xml(subject.datacite).fetch("resource", {})
-      expect(datacite["identifier"]).to eq("identifierType"=>"DOI", "__content__"=>"10.4124/05f6c379-dd68-4cdb-880d-33d3e9576d52/1")
-      expect(datacite["xmlns"]).to eq("http://datacite.org/schema/kernel-4")
-    end
-  end
-
-  context "change metadata as datacite xml" do
-    it "with data citation" do
-      input = "10.7554/eLife.01567"
-      subject = Bolognese::Metadata.new(input: input, from: "crossref")
-      subject.doi = "10.5061/DRYAD.8515"
-      subject.titles = [{ "title" => "Data from: Automated quantitative histology reveals vascular morphodynamics during Arabidopsis hypocotyl secondary growth" }]
-      subject.types = { "schemaOrg" => "Dataset", "resourceTypeGeneral" => "Dataset" }
-      expect(subject.valid?).to be true
-      datacite = Maremma.from_xml(subject.datacite).fetch("resource", {})
-      expect(datacite.dig("identifier", "__content__")).to eq("10.5061/DRYAD.8515")
-      expect(datacite.dig("resourceType", "resourceTypeGeneral")).to eq("Dataset")
-      expect(datacite.dig("titles", "title")).to eq("Data from: Automated quantitative histology reveals vascular morphodynamics during Arabidopsis hypocotyl secondary growth")
-      expect(datacite.dig("relatedIdentifiers", "relatedIdentifier").length).to eq(27)
-      expect(datacite.dig("relatedIdentifiers", "relatedIdentifier").first).to eq("__content__"=>"2050-084X", "relatedIdentifierType"=>"ISSN", "relationType"=>"IsPartOf", "resourceTypeGeneral"=>"Collection")
-      expect(datacite.dig("relatedIdentifiers", "relatedIdentifier")[1]).to eq("relatedIdentifierType"=>"DOI", "relationType"=>"References", "__content__"=>"10.1038/nature02100")
-      expect(datacite.dig("rightsList", "rights")).to eq("rightsURI"=>"https://creativecommons.org/licenses/by/3.0/legalcode", "rightsIdentifier"=>"cc-by-3.0", "rightsIdentifierScheme"=>"SPDX", "schemeURI"=>"https://spdx.org/licenses/", "__content__"=>"Creative Commons Attribution 3.0 Unported")
-      expect(datacite.dig("fundingReferences", "fundingReference").count).to eq(4)
-      expect(datacite.dig("fundingReferences", "fundingReference").last).to eq("funderName"=>"University of Lausanne", "funderIdentifier" => {"funderIdentifierType"=>"Crossref Funder ID", "__content__"=>"https://doi.org/10.13039/501100006390"})
-    end
-
-    it "change description" do
-      input = "10.7554/eLife.01567"
-      subject = Bolognese::Metadata.new(input: input, from: "crossref")
-      subject.descriptions = { "description" => "This is an abstract." }
-      expect(subject.valid?).to be true
-      datacite = Maremma.from_xml(subject.datacite).fetch("resource", {})
-      expect(datacite.dig("descriptions", "description")).to eq([{"__content__"=>"eLife, 3, e01567", "descriptionType"=>"SeriesInformation"}, {"__content__"=>"This is an abstract.", "descriptionType"=>"Abstract"}])
-    end
-
-    it "change description no input" do
-      input = nil
-      subject = Bolognese::Metadata.new(input: input, from: "datacite", doi: "10.4124/05f6c379-dd68-4cdb-880d-33d3e9576d52/1")
-      subject.descriptions = "This is an abstract."
-      expect(subject.valid?).to be false
-      datacite = Maremma.from_xml(subject.datacite).fetch("resource", {})
-      expect(datacite.dig("descriptions", "description")).to eq("descriptionType"=>"Abstract", "__content__"=>"This is an abstract.")
-    end
-
-    it "required metadata no input" do
-      input = nil
-      subject = Bolognese::Metadata.new(input: input, doi: "10.4124/05f6c379-dd68-4cdb-880d-33d3e9576d52/1")
-      subject.creators = [{"creatorName"=>"Fenner, Martin", "givenName"=>"Martin", "familyName"=>"Fenner"}]
-      subject.titles = [{ "title" => "Data from: Automated quantitative histology reveals vascular morphodynamics during Arabidopsis hypocotyl secondary growth" }]
-      subject.types = { "schemaOrg" => "Dataset", "resourceTypeGeneral" => "Dataset" }
-      subject.publication_year = "2011"
-      subject.state = "findable"
-      expect(subject.exists?).to be true
-      datacite = Maremma.from_xml(subject.datacite).fetch("resource", {})
-      expect(datacite.dig("identifier", "__content__")).to eq("10.4124/05f6c379-dd68-4cdb-880d-33d3e9576d52/1")
-      expect(datacite.dig("resourceType", "resourceTypeGeneral")).to eq("Dataset")
-      expect(datacite.dig("titles", "title")).to eq("Data from: Automated quantitative histology reveals vascular morphodynamics during Arabidopsis hypocotyl secondary growth")
-
-    end
-
-    it "change license" do
-      input = "10.7554/eLife.01567"
-      subject = Bolognese::Metadata.new(input: input, from: "crossref")
-      subject.rights_list = [{ "rights_uri" => "https://creativecommons.org/licenses/by-nc-sa/4.0", "rights" => "Creative Commons Attribution-NonCommercial-ShareAlike" }]
-      expect(subject.valid?).to be true
-      datacite = Maremma.from_xml(subject.datacite).fetch("resource", {})
-      expect(datacite.dig("rightsList", "rights")).to eq("Creative Commons Attribution-NonCommercial-ShareAlike")
-    end
-
-    it "change license url" do
-      input = "10.7554/eLife.01567"
-      subject = Bolognese::Metadata.new(input: input, from: "crossref")
-      subject.rights_list = [{ "rightsUri" => "https://creativecommons.org/licenses/by-nc-sa/4.0" }]
-      expect(subject.valid?).to be true
-      datacite = Maremma.from_xml(subject.datacite).fetch("resource", {})
-      expect(datacite.dig("rightsList", "rights")).to eq("rightsURI"=>"https://creativecommons.org/licenses/by-nc-sa/4.0")
-    end
-
-    it "change license name" do
-      input = "10.7554/eLife.01567"
-      subject = Bolognese::Metadata.new(input: input, from: "crossref")
-      subject.rights_list = [{ "rights" => "Creative Commons Attribution-NonCommercial-ShareAlike" }]
-      expect(subject.valid?).to be true
-      datacite = Maremma.from_xml(subject.datacite).fetch("resource", {})
-      expect(datacite.dig("rightsList", "rights")).to eq("Creative Commons Attribution-NonCommercial-ShareAlike")
-    end
-
-    it "change state" do
-      input = "10.7554/eLife.01567"
-      subject = Bolognese::Metadata.new(input: input, from: "crossref")
-      expect(subject.valid?).to be true
-      expect(subject.state).to eq("findable")
-      subject.state = "registered"
-      datacite = Maremma.from_xml(subject.datacite).fetch("resource", {})
-      expect(datacite.dig("identifier", "__content__")).to eq("10.7554/elife.01567")
-      expect(subject.state).to eq("registered")
-    end
-
-    it "change identifiers" do
-      input = "10.7554/eLife.01567"
-      subject = Bolognese::Metadata.new(input: input, from: "crossref")
-      expect(subject.valid?).to be true
-      expect(subject.identifiers).to eq([{"identifier"=>"e01567", "identifierType"=>"article_number"}])
-      subject.identifiers = [{ "identifierType" => "article_number", "identifier" => "abc" }]
-      datacite = Maremma.from_xml(subject.datacite).fetch("resource", {})
-      expect(datacite.dig("identifier", "__content__")).to eq("10.7554/elife.01567")
-      expect(subject.identifiers).to eq([{"identifier"=>"abc", "identifierType"=>"article_number"}])
-    end
-
-    it "validates against schema" do
-      input = "10.7554/eLife.01567"
-      subject = Bolognese::Metadata.new(input: input, from: "crossref")
-      subject.doi = "123"
-      subject.titles = "Data from: Automated quantitative histology reveals vascular morphodynamics during Arabidopsis hypocotyl secondary growth"
-      subject.types = { "schemaOrg" => "Dataset", "resourceTypeGeneral" => "Dataset" }
-      expect(subject.doi).to eq("123")
-      expect(subject.valid?).to be true
-    end
-
-    it "from schema_org gtex" do
-      input = fixture_path + "schema_org_gtex.json"
-      subject = Bolognese::Metadata.new(input: input, from: "schema_org")
-      expect(subject.valid?).to be true
-      datacite = Maremma.from_xml(subject.datacite).fetch("resource", {})
-      expect(datacite.dig("identifier", "__content__")).to eq("10.25491/d50j-3083")
-      expect(datacite.dig("creators", "creator").count).to eq(1)
-      expect(datacite.dig("creators", "creator")).to eq("creatorName"=>{"__content__"=>"The GTEx Consortium", "nameType"=>"Organizational"})
-      expect(datacite.dig("resourceType", "resourceTypeGeneral")).to eq("Dataset")
-      expect(datacite.dig("resourceType", "__content__")).to eq("Gene expression matrices")
-      expect(datacite.dig("titles", "title")).to eq("Fully processed, filtered and normalized gene expression matrices (in BED format) for each tissue, which were used as input into FastQTL for eQTL discovery")
-      expect(datacite.dig("version")).to eq("v7")
-      expect(datacite.dig("publisher")).to eq("GTEx")
-      expect(datacite.dig("descriptions", "description")).to eq("__content__"=>"GTEx", "descriptionType"=>"SeriesInformation")
-      expect(datacite.dig("publicationYear")).to eq("2017")
-      expect(datacite.dig("dates", "date")).to eq("__content__"=>"2017", "dateType"=>"Issued")
-      expect(datacite.dig("subjects", "subject")).to eq(["gtex", "annotation", "phenotype", "gene regulation", "transcriptomics"])
-      expect(datacite.dig("alternateIdentifiers", "alternateIdentifier")).to eq("__content__"=>"687610993", "alternateIdentifierType"=>"md5")
-      expect(datacite.dig("fundingReferences", "fundingReference").count).to eq(7)
-      expect(datacite.dig("fundingReferences", "fundingReference").last).to eq("funderIdentifier" => {"__content__"=>"https://doi.org/10.13039/100000065", "funderIdentifierType"=>"Crossref Funder ID"},"funderName" => "National Institute of Neurological Disorders and Stroke (NINDS)")
-    end
-  end
-end