bolognese 1.3.1 → 2.3.9

data/Gemfile.lock

@@ -1,204 +1,238 @@
 PATH
   remote: .
   specs:
-    bolognese (1.3.1)
-      activesupport (>= 4.2.5, < 6)
+    bolognese (2.3.9)
+      activesupport (>= 4.2.5)
       benchmark_methods (~> 0.7)
-      bibtex-ruby (~> 4.1)
+      bibtex-ruby (>= 5.1.0)
       builder (~> 3.2, >= 3.2.2)
-      citeproc-ruby (~> 1.1, >= 1.1.10)
+      citeproc-ruby (~> 1.1, >= 1.1.12)
       colorize (~> 0.8.1)
-      concurrent-ruby (~> 1.0.5)
-      csl-styles (~> 1.0, >= 1.0.1.8)
+      concurrent-ruby (~> 1.1, >= 1.1.5)
+      csl-styles (~> 1.0, >= 1.0.1.10)
       edtf (~> 3.0, >= 3.0.4)
       gender_detector (~> 0.1.2)
       iso8601 (~> 0.9.1)
-      json-ld-preloaded (= 3.0.2)
-      jsonlint (~> 0.2.0)
+      json-ld-preloaded (~> 3.1, >= 3.1.3)
+      jsonlint (~> 0.3.0)
       loofah (~> 2.0, >= 2.0.3)
-      maremma (>= 3.5.7, < 5)
+      maremma (~> 5.0)
       namae (~> 1.0)
-      nokogiri (~> 1.8.1)
-      oj (>= 2.8.3)
+      nokogiri (~> 1.16, >= 1.16.2)
+      oj (~> 3.10)
+      oj_mimic_json (~> 1.0, >= 1.0.1)
       postrank-uri (~> 1.0, >= 1.0.18)
-      rdf-rdfxml (~> 2.0)
-      rdf-turtle (~> 2.2)
-      thor (~> 0.19)
+      rdf-rdfxml (~> 3.1)
+      rdf-turtle (~> 3.1)
+      thor (>= 0.19)
 
 GEM
   remote: https://rubygems.org/
   specs:
-    activesupport (5.2.3)
+    activesupport (6.1.7.3)
       concurrent-ruby (~> 1.0, >= 1.0.2)
-      i18n (>= 0.7, < 2)
-      minitest (~> 5.1)
-      tzinfo (~> 1.1)
-    addressable (2.6.0)
-      public_suffix (>= 2.0.2, < 4.0)
+      i18n (>= 1.6, < 2)
+      minitest (>= 5.1)
+      tzinfo (~> 2.0)
+      zeitwerk (~> 2.3)
+    addressable (2.8.1)
+      public_suffix (>= 2.0.2, < 6.0)
     benchmark_methods (0.7)
-    bibtex-ruby (4.4.7)
+    bibtex-ruby (6.0.0)
       latex-decode (~> 0.0)
-    builder (3.2.3)
-    citeproc (1.0.9)
+    builder (3.2.4)
+    byebug (11.1.3)
+    citeproc (1.0.10)
       namae (~> 1.0)
-    citeproc-ruby (1.1.10)
+    citeproc-ruby (1.1.14)
       citeproc (~> 1.0, >= 1.0.9)
-      csl (~> 1.5)
-    codeclimate-test-reporter (1.0.9)
-      simplecov (<= 0.13)
+      csl (~> 1.6)
     colorize (0.8.1)
-    concurrent-ruby (1.0.5)
-    crack (0.4.3)
-      safe_yaml (~> 1.0.0)
-    crass (1.0.4)
-    csl (1.5.0)
+    concurrent-ruby (1.2.2)
+    crack (0.4.5)
+      rexml
+    crass (1.0.6)
+    csl (1.6.0)
       namae (~> 1.0)
-    csl-styles (1.0.1.9)
+      rexml
+    csl-styles (1.0.1.11)
       csl (~> 1.0)
-    diff-lcs (1.3)
-    docile (1.1.5)
-    ebnf (1.1.3)
-      rdf (~> 3.0)
-      sxp (~> 1.0)
-    edtf (3.0.4)
-      activesupport (>= 3.0, < 6.0)
-    excon (0.62.0)
-    faraday (0.14.0)
-      multipart-post (>= 1.2, < 3)
+    diff-lcs (1.5.0)
+    docile (1.4.0)
+    ebnf (2.3.3)
+      htmlentities (~> 4.3)
+      rdf (~> 3.2)
+      scanf (~> 1.0)
+      sxp (~> 1.2)
+      unicode-types (~> 1.8)
+    edtf (3.1.1)
+      activesupport (>= 3.0, < 8.0)
+    excon (0.71.1)
+    faraday (2.7.6)
+      faraday-net_http (>= 2.0, < 3.1)
+      ruby2_keywords (>= 0.0.4)
     faraday-encoding (0.0.5)
       faraday
-    faraday_middleware (0.12.2)
-      faraday (>= 0.7.4, < 1.0)
+    faraday-excon (2.1.0)
+      excon (>= 0.27.4)
+      faraday (~> 2.0)
+    faraday-follow_redirects (0.3.0)
+      faraday (>= 1, < 3)
+    faraday-gzip (0.1.0)
+      faraday (>= 1.0)
+      zlib (~> 2.1)
+    faraday-multipart (1.0.4)
+      multipart-post (~> 2)
+    faraday-net_http (3.0.2)
     gender_detector (0.1.2)
       unicode_utils (>= 1.3.0)
-    haml (5.1.1)
+    haml (5.2.2)
       temple (>= 0.8.0)
       tilt
-    hamster (3.0.0)
-      concurrent-ruby (~> 1.0)
-    hashdiff (1.0.0.beta1)
+    hashdiff (1.0.1)
     htmlentities (4.3.4)
-    i18n (1.6.0)
+    i18n (1.14.1)
       concurrent-ruby (~> 1.0)
     iso8601 (0.9.1)
-    json (2.2.0)
-    json-ld (3.0.2)
-      multi_json (~> 1.12)
-      rdf (>= 2.2.8, < 4.0)
-    json-ld-preloaded (3.0.2)
-      json-ld (~> 3.0)
-      multi_json (~> 1.12)
-      rdf (~> 3.0)
-    jsonlint (0.2.0)
-      oj (~> 2)
-      trollop (~> 2)
-    latex-decode (0.3.1)
+    json (2.6.2)
+    json-canonicalization (0.3.1)
+    json-ld (3.2.4)
+      htmlentities (~> 4.3)
+      json-canonicalization (~> 0.3)
+      link_header (~> 0.0, >= 0.0.8)
+      multi_json (~> 1.15)
+      rack (>= 2.2, < 4)
+      rdf (~> 3.2, >= 3.2.10)
+    json-ld-preloaded (3.2.2)
+      json-ld (~> 3.2)
+      rdf (~> 3.2)
+    jsonlint (0.3.0)
+      oj (~> 3)
+      optimist (~> 3)
+    latex-decode (0.4.0)
     link_header (0.0.8)
-    loofah (2.2.3)
+    loofah (2.21.3)
       crass (~> 1.0.2)
-      nokogiri (>= 1.5.9)
-    maremma (4.2.6)
-      activesupport (>= 4.2.5, < 6)
+      nokogiri (>= 1.12.0)
+    maremma (5.0.0)
+      activesupport (>= 4.2.5)
       addressable (>= 2.3.6)
       builder (~> 3.2, >= 3.2.2)
-      excon (~> 0.60, < 0.63)
-      faraday (~> 0.14, < 0.15)
-      faraday-encoding (~> 0.0.4)
-      faraday_middleware (~> 0.12.0)
-      multi_json (~> 1.12)
-      nokogiri (~> 1.8.1)
+      excon (~> 0.71.0)
+      faraday (>= 2.0)
+      faraday-encoding (~> 0.0.5)
+      faraday-excon (~> 2.1.0)
+      faraday-follow_redirects (~> 0.3.0)
+      faraday-gzip (~> 0.1.0)
+      faraday-multipart (~> 1.0.4)
+      nokogiri (~> 1.16, >= 1.16.2)
       oj (>= 2.8.3)
-    mini_portile2 (2.3.0)
-    minitest (5.11.3)
-    multi_json (1.13.1)
-    multipart-post (2.1.1)
-    namae (1.0.1)
-    nokogiri (1.8.5)
-      mini_portile2 (~> 2.3.0)
-    oj (2.18.5)
+      oj_mimic_json (~> 1.0, >= 1.0.1)
+    matrix (0.4.2)
+    mini_portile2 (2.8.5)
+    minitest (5.18.0)
+    multi_json (1.15.0)
+    multipart-post (2.3.0)
+    namae (1.1.1)
+    nokogiri (1.16.2)
+      mini_portile2 (~> 2.8.2)
+      racc (~> 1.4)
+    oj (3.14.2)
+    oj_mimic_json (1.0.1)
+    optimist (3.0.1)
     postrank-uri (1.0.24)
       addressable (>= 2.4.0)
       nokogiri (>= 1.8.0)
       public_suffix (>= 2.0.0, < 2.1)
     public_suffix (2.0.5)
-    rack (2.0.7)
+    racc (1.6.0)
+    rack (2.2.4)
     rack-test (0.8.3)
       rack (>= 1.0, < 3)
-    rake (12.3.2)
-    rdf (3.0.12)
-      hamster (~> 3.0)
+    rake (12.3.3)
+    rdf (3.2.11)
       link_header (~> 0.0, >= 0.0.8)
-    rdf-aggregate-repo (2.2.1)
-      rdf (>= 2.2, < 4.0)
-    rdf-rdfa (3.0.1)
-      haml (~> 5.0)
+    rdf-aggregate-repo (3.2.1)
+      rdf (~> 3.2)
+    rdf-rdfa (3.2.2)
+      haml (>= 5.2, < 7)
       htmlentities (~> 4.3)
-      rdf (~> 3.0)
-      rdf-aggregate-repo (>= 2.2, < 4.0)
-      rdf-xsd (~> 3.0)
-    rdf-rdfxml (2.2.1)
+      rdf (~> 3.2)
+      rdf-aggregate-repo (~> 3.2)
+      rdf-vocab (~> 3.2)
+      rdf-xsd (~> 3.2)
+    rdf-rdfxml (3.2.1)
+      haml (~> 5.2)
       htmlentities (~> 4.3)
-      rdf (>= 2.2, < 4.0)
-      rdf-rdfa (>= 2.2, < 4.0)
-      rdf-xsd (>= 2.2, < 4.0)
-    rdf-turtle (2.2.2)
-      ebnf (~> 1.1)
-      rdf (>= 2.2, < 4.0)
-    rdf-xsd (3.0.1)
-      rdf (~> 3.0)
-    rspec (3.8.0)
-      rspec-core (~> 3.8.0)
-      rspec-expectations (~> 3.8.0)
-      rspec-mocks (~> 3.8.0)
-    rspec-core (3.8.2)
-      rspec-support (~> 3.8.0)
-    rspec-expectations (3.8.4)
+      rdf (~> 3.2)
+      rdf-rdfa (~> 3.2)
+      rdf-xsd (~> 3.2)
+    rdf-turtle (3.2.1)
+      ebnf (~> 2.3)
+      rdf (~> 3.2)
+    rdf-vocab (3.2.6)
+      rdf (~> 3.2, >= 3.2.4)
+    rdf-xsd (3.2.1)
+      rdf (~> 3.2)
+      rexml (~> 3.2)
+    rexml (3.2.5)
+    rspec (3.11.0)
+      rspec-core (~> 3.11.0)
+      rspec-expectations (~> 3.11.0)
+      rspec-mocks (~> 3.11.0)
+    rspec-core (3.11.0)
+      rspec-support (~> 3.11.0)
+    rspec-expectations (3.11.1)
       diff-lcs (>= 1.2.0, < 2.0)
-      rspec-support (~> 3.8.0)
-    rspec-mocks (3.8.1)
+      rspec-support (~> 3.11.0)
+    rspec-mocks (3.11.1)
       diff-lcs (>= 1.2.0, < 2.0)
-      rspec-support (~> 3.8.0)
-    rspec-support (3.8.2)
+      rspec-support (~> 3.11.0)
+    rspec-support (3.11.1)
     rspec-xsd (0.1.0)
       nokogiri (~> 1.6)
       rspec (~> 3)
-    safe_yaml (1.0.5)
-    simplecov (0.13.0)
-      docile (~> 1.1.0)
+    ruby2_keywords (0.0.5)
+    scanf (1.0.0)
+    simplecov (0.17.1)
+      docile (~> 1.1)
       json (>= 1.8, < 3)
       simplecov-html (~> 0.10.0)
     simplecov-html (0.10.2)
-    sxp (1.0.2)
-      rdf (~> 3.0)
-    temple (0.8.1)
-    thor (0.20.3)
-    thread_safe (0.3.6)
-    tilt (2.0.9)
-    trollop (2.9.9)
-    tzinfo (1.2.5)
-      thread_safe (~> 0.1)
+    sxp (1.2.4)
+      matrix (~> 0.4)
+      rdf (~> 3.2)
+    temple (0.10.2)
+    thor (1.2.2)
+    tilt (2.2.0)
+    tzinfo (2.0.6)
+      concurrent-ruby (~> 1.0)
+    unicode-types (1.8.0)
     unicode_utils (1.4.0)
     vcr (3.0.3)
-    webmock (3.6.0)
-      addressable (>= 2.3.6)
+    webmock (3.18.1)
+      addressable (>= 2.8.0)
       crack (>= 0.3.2)
       hashdiff (>= 0.4.0, < 2.0.0)
+    zeitwerk (2.6.8)
+    zlib (2.1.1)
 
 PLATFORMS
   ruby
 
 DEPENDENCIES
   bolognese!
-  bundler (~> 1.0)
-  codeclimate-test-reporter (~> 1.0, >= 1.0.8)
+  bundler (>= 1.0)
+  byebug
   hashdiff (>= 1.0.0.beta1, < 2.0.0)
+  json-canonicalization (= 0.3.1)
   rack-test (~> 0)
   rake (~> 12.0)
   rspec (~> 3.4)
   rspec-xsd (~> 0.1.0)
-  simplecov (~> 0.1)
+  simplecov (= 0.17.1)
   vcr (~> 3.0, >= 3.0.3)
   webmock (~> 3.0, >= 3.0.1)
 
 BUNDLED WITH
-   1.17.3
+   2.5.5

data/README.md

@@ -1,6 +1,6 @@
 [![Identifier](https://img.shields.io/badge/doi-10.5438%2Fn138--z3mk-fca709.svg)](https://doi.org/10.5438/n138-z3mk)
 [![Gem Version](https://badge.fury.io/rb/bolognese.svg)](https://badge.fury.io/rb/bolognese)
-[![Build Status](https://travis-ci.org/datacite/bolognese.svg?branch=master)](https://travis-ci.org/datacite/bolognese)
+![Build Ruby Gem](https://github.com/datacite/bolognese/workflows/Build%20Ruby%20Gem/badge.svg)
 [![Code Climate](https://codeclimate.com/github/datacite/bolognese/badges/gpa.svg)](https://codeclimate.com/github/datacite/bolognese)
 [![Test Coverage](https://codeclimate.com/github/datacite/bolognese/badges/coverage.svg)](https://codeclimate.com/github/datacite/bolognese/coverage)
 
@@ -8,9 +8,10 @@
 
 Ruby gem and command-line utility for conversion of DOI metadata from and to different metadata formats, including [schema.org](https://schema.org).
 
+
 ## Features
 
-Bolognese reads and/or writes these metadata formats:
+Bolognese reads and/or writes these metadata formats: 
 
 <table class="table table-bordered table-striped">
   <thead>

data/bolognese.gemspec

@@ -13,44 +13,46 @@ Gem::Specification.new do |s|
   s.version       = Bolognese::VERSION
   s.extra_rdoc_files = ["README.md"]
   s.license       = 'MIT'
-  s.required_ruby_version = '~> 2.3'
+  s.required_ruby_version = ['>=3.0']
 
-  # Declary dependencies here, rather than in the Gemfile
-  s.add_dependency 'maremma', '>= 3.5.7', '< 5'
-  s.add_dependency 'nokogiri', '~> 1.8.1'
+  # Declare dependencies here, rather than in the Gemfile
+  s.add_dependency 'maremma', '~> 5.0'
+  #s.add_dependency 'faraday', '~> 0.17.3'
+  s.add_dependency 'nokogiri', '~> 1.16', '>= 1.16.2'
   s.add_dependency 'loofah', '~> 2.0', '>= 2.0.3'
   s.add_dependency 'builder', '~> 3.2', '>= 3.2.2'
-  s.add_dependency 'activesupport', '>= 4.2.5', '< 6'
-  s.add_dependency 'bibtex-ruby', '~> 4.1'
-  s.add_dependency 'thor', '~> 0.19'
+  s.add_dependency 'activesupport', '>= 4.2.5'
+  s.add_dependency 'bibtex-ruby', '>= 5.1.0'
+  s.add_dependency 'thor', '>= 0.19'
   s.add_dependency 'colorize', '~> 0.8.1'
   s.add_dependency 'namae', '~> 1.0'
   s.add_dependency 'edtf', '~> 3.0', '>= 3.0.4'
-  s.add_dependency 'citeproc-ruby', '~> 1.1', '>= 1.1.10'
-  s.add_dependency 'csl-styles', '~> 1.0', '>= 1.0.1.8'
+  s.add_dependency 'citeproc-ruby', '~> 1.1', '>= 1.1.12'
+  s.add_dependency 'csl-styles', '~> 1.0', '>= 1.0.1.10'
   s.add_dependency 'iso8601', '~> 0.9.1'
   s.add_dependency 'postrank-uri', '~> 1.0', '>= 1.0.18'
-  s.add_dependency 'json-ld-preloaded', '= 3.0.2'
-  s.add_dependency 'jsonlint', '~> 0.2.0'
-  s.add_dependency 'oj', '>= 2.8.3'
-  s.add_dependency 'rdf-turtle', '~> 2.2'
-  s.add_dependency 'rdf-rdfxml', '~> 2.0'
+  s.add_dependency 'json-ld-preloaded', '~> 3.1', '>= 3.1.3'
+  s.add_dependency 'jsonlint', '~> 0.3.0'
+  s.add_dependency 'oj', '~> 3.10'
+  s.add_dependency "oj_mimic_json", "~> 1.0", ">= 1.0.1"
+  s.add_dependency 'rdf-turtle', '~> 3.1'
+  s.add_dependency 'rdf-rdfxml', '~> 3.1'
   s.add_dependency 'benchmark_methods', '~> 0.7'
   s.add_dependency 'gender_detector', '~> 0.1.2'
-  s.add_dependency 'concurrent-ruby', '~> 1.0.5'
-  s.add_development_dependency 'bundler', '~> 1.0'
+  s.add_dependency 'concurrent-ruby', '~> 1.1', '>= 1.1.5'
+  s.add_development_dependency 'bundler', '>= 1.0'
   s.add_development_dependency 'rspec', '~> 3.4'
   s.add_development_dependency 'rspec-xsd', '~> 0.1.0'
   s.add_development_dependency 'rake', '~> 12.0'
   s.add_development_dependency 'rack-test', '~> 0'
   s.add_development_dependency 'vcr', '~> 3.0', '>= 3.0.3'
   s.add_development_dependency 'webmock', '~> 3.0', '>= 3.0.1'
-  s.add_development_dependency 'codeclimate-test-reporter', '~> 1.0', '>= 1.0.8'
-  s.add_development_dependency 'simplecov', '~> 0.1'
+  s.add_development_dependency 'simplecov', '0.17.1'
   s.add_development_dependency 'hashdiff', ['>= 1.0.0.beta1', '< 2.0.0']
+  s.add_development_dependency 'byebug'
+  s.add_development_dependency 'json-canonicalization', '0.3.1'
 
   s.require_paths = ["lib"]
-  s.files       = `git ls-files`.split($/)
-  s.test_files    = `git ls-files -- {test,spec,features}/*`.split("\n")
+  s.files = `git ls-files`.split($/).reject { |f| f.match(%r{^(test|spec|features)/}) }
   s.executables = ["bolognese"]
 end

data/lib/bolognese/author_utils.rb

@@ -9,10 +9,13 @@ module Bolognese
     # benchmark :get_authors
 
     IDENTIFIER_SCHEME_URIS = {
-      "ORCID" => "http://orcid.org/"
+      "ORCID" => "https://orcid.org/"
     }
 
     def get_one_author(author)
+      # author is a string
+      author = { "creatorName" => author } if author.is_a?(String)
+
       # malformed XML
       return nil if author.fetch("creatorName", nil).is_a?(Array)
 
@@ -25,23 +28,23 @@ module Bolognese
       contributor_type = parse_attributes(author.fetch("contributorType", nil))
 
       name_type = parse_attributes(author.fetch("creatorName", nil), content: "nameType", first: true) || parse_attributes(author.fetch("contributorName", nil), content: "nameType", first: true)
-      name_type = family_name.present? ? "Personal" : nil if name_type.blank?
 
       name_identifiers = Array.wrap(author.fetch("nameIdentifier", nil)).map do |ni|
+        name_identifier = ni["__content__"].strip if ni["__content__"].present?
         if ni["nameIdentifierScheme"] == "ORCID"
-          { 
-            "nameIdentifier" => normalize_orcid(ni["__content__"]),
+          {
+            "nameIdentifier" => normalize_orcid(name_identifier),
             "schemeUri" => "https://orcid.org",
             "nameIdentifierScheme" => "ORCID" }.compact
-        elsif ni["schemeURI"].present?
-          { 
-            "nameIdentifier" => ni["schemeURI"].to_s + ni["__content__"].to_s,
-            "schemeUri" => ni["schemeURI"].to_s,
-            "nameIdentifierScheme" => ni["nameIdentifierScheme"] }.compact
+        elsif ni["nameIdentifierScheme"] == "ROR"
+          {
+            "nameIdentifier" => normalize_ror(name_identifier),
+            "schemeUri" => "https://ror.org",
+            "nameIdentifierScheme" => "ROR" }.compact
         else
-          { 
-            "nameIdentifier" => ni["__content__"],
-            "schemeUri" => "Other",
+          {
+            "nameIdentifier" => name_identifier,
+            "schemeUri" => ni.fetch("schemeURI", nil),
             "nameIdentifierScheme" => ni["nameIdentifierScheme"] }.compact
         end
       end.presence
@@ -57,6 +60,7 @@ module Bolognese
       return author if family_name.present?
 
       if is_personal_name?(author)
+        Namae.options[:include_particle_in_family] = true
         names = Namae.parse(name)
         parsed_name = names.first
 
@@ -73,14 +77,14 @@ module Bolognese
           "name" => name,
           "givenName" => given_name,
           "familyName" => family_name,
-          "nameIdentifiers" => name_identifiers,
-          "affiliation" => author.fetch("affiliation", nil),
+          "nameIdentifiers" => Array.wrap(name_identifiers),
+          "affiliation" => Array.wrap(author.fetch("affiliation", nil)),
           "contributorType" => contributor_type }.compact
       else
-        { "nameType" => name_type, 
+        { "nameType" => name_type,
           "name" => name,
-          "nameIdentifiers" => name_identifiers,
-          "affiliation" => author.fetch("affiliation", nil),
+          "nameIdentifiers" => Array.wrap(name_identifiers),
+          "affiliation" => Array.wrap(author.fetch("affiliation", nil)),
           "contributorType" => contributor_type }.compact
       end
     end
@@ -96,7 +100,7 @@ module Bolognese
 
       # titleize strings
       # remove non-standard space characters
-      author.my_titleize.gsub(/[[:space:]]/, ' ')
+      author.gsub(/[[:space:]]/, ' ')
     end
 
     def is_personal_name?(author)
@@ -135,20 +139,40 @@ module Bolognese
 
     def get_affiliations(affiliations)
       Array.wrap(affiliations).map do |a|
+        affiliation_identifier = nil
         if a.is_a?(String)
-          id = nil
           name = a.squish
           affiliation_identifier_scheme = nil
+          scheme_uri = nil
         else
-          id = a["affiliationIdentifier"]
-          id = !id.to_s.start_with?("https://") && a["schemeURI"].present? ? normalize_id(a["schemeURI"] + id) : normalize_id(id)
-          name = a["__content__"].squish
+          scheme_uri = a["schemeURI"]
+          if a["affiliationIdentifier"].present?
+            affiliation_identifier = a["affiliationIdentifier"]
+            if a["schemeURI"].present?
+              schemeURI = a["schemeURI"].end_with?("/") ? a["schemeURI"] : a["schemeURI"] + "/"
+            end
+            affiliation_identifier = !affiliation_identifier.to_s.start_with?("https://") && schemeURI.present? ? normalize_id(schemeURI + affiliation_identifier) : normalize_id(affiliation_identifier)
+            # The normalize_id(affiliation_identifier) method currently discards affiliation identifiers that don't start with a URL, 
+            # for example: affiliation_identifier = "05bp8ka05".
+            # To address this issue, we are introducing the following change to handle such affiliation identifiers.
+            # when `normalize_id` method could not normalize, it returns nil, hence we have following condition
+            if affiliation_identifier.nil?
+              if a["affiliationIdentifierScheme"] == "ROR"
+                scheme_uri = "https://ror.org"
+                affiliation_identifier = normalize_ror(a["affiliationIdentifier"])
+              else
+                affiliation_identifier = a["affiliationIdentifier"]
+              end
+            end
+          end
+          name = a["__content__"].to_s.squish.presence
           affiliation_identifier_scheme = a["affiliationIdentifierScheme"]
         end
 
-        { "id" => id,
-          "name" => name,
-          "affiliationIdentifierScheme" => affiliation_identifier_scheme }.compact
+        { "name" => name,
+          "affiliationIdentifier" => affiliation_identifier,
+          "affiliationIdentifierScheme" => affiliation_identifier_scheme,
+          "schemeUri" => scheme_uri }.compact
       end.presence
     end
   end

data/lib/bolognese/cli.rb

@@ -29,18 +29,20 @@ module Bolognese
     method_option :regenerate, :type => :boolean, :force => false
     method_option :style, aliases: "-s", default: "apa"
     method_option :locale, aliases: "-l", default: "en-US"
+    method_option :show_errors, :type => :boolean, :force => false
     def convert(input)
       metadata = Metadata.new(input: input,
                               from: options[:from],
                               regenerate: options[:regenerate],
                               style: options[:style],
-                              locale: options[:locale])
+                              locale: options[:locale],
+                              show_errors: options[:show_errors])
       to = options[:to] || "schema_org"
 
-      if metadata.valid?
-        puts metadata.send(to)
-      else
+      if options[:show_errors] && !metadata.valid?
         $stderr.puts metadata.errors
+      else
+        puts metadata.send(to)
       end
     end