bolognese 1.3.1 → 2.3.9

data/spec/writers/rdf_xml_writer_spec.rb

@@ -1,100 +0,0 @@
-# frozen_string_literal: true
-
-require 'spec_helper'
-
-describe Bolognese::Metadata, vcr: true do
-  context "write metadata as rdf xml" do
-    # it "journal article" do
-    #   input = "10.7554/eLife.01567"
-    #   subject = Bolognese::Metadata.new(input: input, from: "crossref")
-    #   expect(subject.valid?).to be true
-    #   rdf_xml = Maremma.from_xml(subject.rdf_xml).fetch("RDF", {})
-    #   expect(rdf_xml.dig("ScholarlyArticle", "rdf:about")).to eq("https://doi.org/10.7554/elife.01567")
-    #   expect(rdf_xml.dig("ScholarlyArticle", "name")).to eq("Automated quantitative histology reveals vascular morphodynamics during Arabidopsis hypocotyl secondary growth")
-    #   expect(rdf_xml.dig("ScholarlyArticle", "datePublished", "__content__")).to eq("2014-02-11")
-    # end
-    #
-    # it "with pages" do
-    #   input = "https://doi.org/10.1155/2012/291294"
-    #   subject = Bolognese::Metadata.new(input: input, from: "crossref")
-    #   expect(subject.valid?).to be true
-    #   rdf_xml = Maremma.from_xml(subject.rdf_xml).fetch("RDF", {})
-    #   expect(rdf_xml.dig("ScholarlyArticle", "rdf:about")).to eq("https://doi.org/10.1155/2012/291294")
-    #   expect(rdf_xml.dig("ScholarlyArticle", "name")).to eq("Delineating a Retesting Zone Using Receiver Operating Characteristic Analysis on Serial QuantiFERON Tuberculosis Test Results in US Healthcare Workers")
-    #   expect(rdf_xml.dig("ScholarlyArticle", "datePublished", "__content__")).to eq("2012")
-    #   expect(rdf_xml.dig("ScholarlyArticle", "pagination")).to eq("1-7")
-    # end
-
-    # it "Crossref DOI" do
-    #   input = fixture_path + "crossref.bib"
-    #   subject = Bolognese::Metadata.new(input: input, from: "bibtex")
-    #   expect(subject.valid?).to be true
-    #   rdf_xml = Maremma.from_xml(subject.rdf_xml).fetch("RDF", {})
-    #   expect(rdf_xml.dig("ScholarlyArticle", "rdf:about")).to eq("https://doi.org/10.7554/elife.01567")
-    #   expect(rdf_xml.dig("ScholarlyArticle", "name")).to eq("Automated quantitative histology reveals vascular morphodynamics during Arabidopsis hypocotyl secondary growth")
-    #   expect(rdf_xml.dig("ScholarlyArticle", "datePublished", "__content__")).to eq("2014")
-    #   expect(rdf_xml.dig("ScholarlyArticle", "isPartOf", "Periodical", "name")).to eq("eLife")
-    # end
-    #
-    # it "BlogPosting" do
-    #   input = "https://doi.org/10.5438/4K3M-NYVG"
-    #   subject = Bolognese::Metadata.new(input: input, from: "datacite")
-    #   expect(subject.valid?).to be true
-    #   rdf_xml = Maremma.from_xml(subject.rdf_xml).fetch("RDF", {})
-    #   expect(rdf_xml.dig("ScholarlyArticle", "rdf:about")).to eq("https://doi.org/10.5438/4k3m-nyvg")
-    #   expect(rdf_xml.dig("ScholarlyArticle", "author", "Person", "rdf:about")).to eq("http://orcid.org/0000-0003-1419-2405")
-    #   expect(rdf_xml.dig("ScholarlyArticle", "author", "Person", "name")).to eq("Fenner, Martin")
-    #   expect(rdf_xml.dig("ScholarlyArticle", "name")).to eq("Eating your own Dog Food")
-    #   expect(rdf_xml.dig("ScholarlyArticle", "keywords")).to eq("datacite, doi, metadata")
-    #   expect(rdf_xml.dig("ScholarlyArticle", "datePublished", "__content__")).to eq("2016-12-20")
-    # end
-    #
-    # it "BlogPosting Citeproc JSON" do
-    #   input = fixture_path + "citeproc.json"
-    #   subject = Bolognese::Metadata.new(input: input, from: "citeproc")
-    #   rdf_xml = Maremma.from_xml(subject.rdf_xml).fetch("RDF", {})
-    #   expect(rdf_xml.dig("BlogPosting", "rdf:about")).to eq("https://doi.org/10.5438/4k3m-nyvg")
-    #   expect(rdf_xml.dig("BlogPosting", "author", "Person", "name")).to eq("Martin Fenner")
-    #   expect(rdf_xml.dig("BlogPosting", "name")).to eq("Eating your own Dog Food")
-    #   expect(rdf_xml.dig("BlogPosting", "datePublished", "__content__")).to eq("2016-12-20")
-    # end
-    #
-    # it "maremma" do
-    #   input = "https://github.com/datacite/maremma"
-    #   subject = Bolognese::Metadata.new(input: input, from: "codemeta")
-    #   rdf_xml = Maremma.from_xml(subject.rdf_xml).fetch("RDF", {})
-    #   expect(rdf_xml.dig("SoftwareSourceCode", "rdf:about")).to eq("https://doi.org/10.5438/qeg0-3gm3")
-    #   expect(rdf_xml.dig("SoftwareSourceCode", "author", "Person", "rdf:about")).to eq("http://orcid.org/0000-0003-0077-4738")
-    #   expect(rdf_xml.dig("SoftwareSourceCode", "author", "Person", "name")).to eq("Martin Fenner")
-    #   expect(rdf_xml.dig("SoftwareSourceCode", "name")).to eq("Maremma: a Ruby library for simplified network calls")
-    #   expect(rdf_xml.dig("SoftwareSourceCode", "keywords")).to eq("faraday, excon, net/http")
-    #   expect(rdf_xml.dig("SoftwareSourceCode", "datePublished", "__content__")).to eq("2017-02-24")
-    # end
-
-    # it "BlogPosting schema.org" do
-    #   input = "https://blog.datacite.org/eating-your-own-dog-food/"
-    #   subject = Bolognese::Metadata.new(input: input, from: "schema_org")
-    #   expect(subject.valid?).to be true
-    #   rdf_xml = Maremma.from_xml(subject.rdf_xml).fetch("RDF", {})
-    #   expect(rdf_xml.dig("ScholarlyArticle", "rdf:about")).to eq("https://doi.org/10.5438/4k3m-nyvg")
-    #   expect(rdf_xml.dig("ScholarlyArticle", "author", "Person", "rdf:about")).to eq("http://orcid.org/0000-0003-1419-2405")
-    #   expect(rdf_xml.dig("ScholarlyArticle", "author", "Person", "name")).to eq("Fenner, Martin")
-    #   expect(rdf_xml.dig("ScholarlyArticle", "name")).to eq("Eating your own Dog Food")
-    #   expect(rdf_xml.dig("ScholarlyArticle", "keywords")).to eq("datacite, doi, metadata")
-    #   expect(rdf_xml.dig("ScholarlyArticle", "datePublished", "__content__")).to eq("2016-12-20")
-    # end
-
-    #   it "BlogPosting" do
-    #     id = "https://doi.org/10.5438/4K3M-NYVG"
-    #     subject = Bolognese::Metadata.new(id: id)
-    #     expect(subject.valid?).to be true
-    #     rdfxml = Maremma.from_xml(subject.rdf_xml).fetch("RDF", {})
-    #     expect(rdfxml.dig("ScholarlyArticle", "rdf:about")).to eq("https://doi.org/10.5438/4k3m-nyvg")
-    #     expect(rdfxml.dig("ScholarlyArticle", "author", "Person", "rdf:about")).to eq("http://orcid.org/0000-0003-1419-2405")
-    #     expect(rdfxml.dig("ScholarlyArticle", "author", "Person", "name")).to eq("Fenner, Martin")
-    #     expect(rdfxml.dig("ScholarlyArticle", "name")).to eq("Eating your own Dog Food")
-    #     expect(rdfxml.dig("ScholarlyArticle", "keywords")).to eq("datacite, doi, metadata")
-    #     expect(rdfxml.dig("ScholarlyArticle", "datePublished", "__content__")).to eq("2016-12-20")
-    #   end
-  end
-end

data/spec/writers/ris_writer_spec.rb

@@ -1,203 +0,0 @@
-# frozen_string_literal: true
-
-require 'spec_helper'
-
-describe Bolognese::Metadata, vcr: true do
-  context "write metadata as ris" do
-    it "journal article" do
-      input = "10.7554/eLife.01567"
-      subject = Bolognese::Metadata.new(input: input, from: "crossref")
-      expect(subject.valid?).to be true
-      ris = subject.ris.split("\r\n")
-      expect(ris[0]).to eq("TY  - JOUR")
-      expect(ris[1]).to eq("T1  - Automated quantitative histology reveals vascular morphodynamics during Arabidopsis hypocotyl secondary growth")
-      expect(ris[2]).to eq("T2  - eLife")
-      expect(ris[3]).to eq("AU  - Sankar, Martial")
-      expect(ris[8]).to eq("DO  - 10.7554/elife.01567")
-      expect(ris[9]).to eq("UR  - https://elifesciences.org/articles/01567")
-      expect(ris[10]).to  start_with("AB  - Among various advantages")
-      expect(ris[11]).to eq("PY  - 2014")
-      expect(ris[12]).to eq("PB  - eLife Sciences Publications, Ltd")
-      expect(ris[13]).to eq("VL  - 3")
-      expect(ris[14]).to eq("SN  - 2050-084X")
-      expect(ris[15]).to eq("ER  - ")
-    end
-
-    it "with pages" do
-      input = "https://doi.org/10.1155/2012/291294"
-      subject = Bolognese::Metadata.new(input: input, from: "crossref")
-      expect(subject.valid?).to be true
-      ris = subject.ris.split("\r\n")
-      expect(ris[0]).to eq("TY  - JOUR")
-      expect(ris[1]).to eq("T1  - Delineating a Retesting Zone Using Receiver Operating Characteristic Analysis on Serial QuantiFERON Tuberculosis Test Results in US Healthcare Workers")
-      expect(ris[2]).to eq("T2  - Pulmonary Medicine")
-      expect(ris[3]).to eq("AU  - Thanassi, Wendy")
-      expect(ris[10]).to eq("DO  - 10.1155/2012/291294")
-      expect(ris[11]).to eq("UR  - http://www.hindawi.com/journals/pm/2012/291294/")
-      expect(ris[12]).to start_with("AB  - . To find a statistically significant separation point for the QuantiFERON")
-      expect(ris[13]).to eq("PY  - 2012")
-      expect(ris[14]).to eq("PB  - Hindawi Limited")
-      expect(ris[15]).to eq("VL  - 2012")
-      expect(ris[16]).to eq("SP  - 1")
-      expect(ris[17]).to eq("EP  - 7")
-      expect(ris[18]).to eq("SN  - 2090-1844")
-      expect(ris[19]).to eq("ER  - ")
-    end
-
-    it "alternate name" do
-      input = "https://doi.org/10.3205/ZMA001102"
-      subject = Bolognese::Metadata.new(input: input, from: "datacite")
-      expect(subject.valid?).to be true
-      ris = subject.ris.split("\r\n")
-      expect(ris[0]).to eq("TY  - RPRT")
-      expect(ris[1]).to eq("T1  - Visions and reality: the idea of competence-oriented assessment for German medical students is not yet realised in licensing examinations")
-      expect(ris[2]).to eq("T2  - GMS Journal for Medical Education; 34(2):Doc25")
-      expect(ris[3]).to eq("AU  - Huber-Lang, Markus")
-      expect(ris[9]).to eq("DO  - 10.3205/zma001102")
-      expect(ris[10]).to eq("UR  - http://www.egms.de/en/journals/zma/2017-34/zma001102.shtml")
-      expect(ris[11]).to start_with("AB  - Objective: Competence orientation")
-      expect(ris[12]).to eq("KW  - medical competence")
-      expect(ris[22]).to eq("PY  - 2017")
-      expect(ris[23]).to eq("PB  - German Medical Science GMS Publishing House")
-      expect(ris[24]).to eq("LA  - en")
-      expect(ris[25]).to eq("SN  - 2366-5017")
-      expect(ris[26]).to eq("ER  - ")
-    end
-
-    it "Crossref DOI" do
-      input = fixture_path + "crossref.bib"
-      subject = Bolognese::Metadata.new(input: input, from: "bibtex")
-
-      ris = subject.ris.split("\r\n")
-      expect(ris[0]).to eq("TY  - JOUR")
-      expect(ris[1]).to eq("T1  - Automated quantitative histology reveals vascular morphodynamics during Arabidopsis hypocotyl secondary growth")
-      expect(ris[2]).to eq("T2  - eLife")
-      expect(ris[3]).to eq("AU  - Sankar, Martial")
-      expect(ris[8]).to eq("DO  - 10.7554/elife.01567")
-      expect(ris[9]).to eq("UR  - http://elifesciences.org/lookup/doi/10.7554/eLife.01567")
-      expect(ris[10]).to eq("AB  - Among various advantages, their small size makes model organisms preferred subjects of investigation. Yet, even in model systems detailed analysis of numerous developmental processes at cellular level is severely hampered by their scale.")
-      expect(ris[11]).to eq("PY  - 2014")
-      expect(ris[12]).to eq("PB  - {eLife} Sciences Organisation, Ltd.")
-      expect(ris[13]).to eq("VL  - 3")
-      expect(ris[14]).to eq("SN  - 2050-084X")
-      expect(ris[15]).to eq("ER  - ")
-    end
-
-    it "BlogPosting" do
-      input = "https://doi.org/10.5438/4K3M-NYVG"
-      subject = Bolognese::Metadata.new(input: input, from: "datacite")
-      expect(subject.valid?).to be true
-      ris = subject.ris.split("\r\n")
-      expect(ris[0]).to eq("TY  - RPRT")
-      expect(ris[1]).to eq("T1  - Eating your own Dog Food")
-      expect(ris[2]).to eq("AU  - Fenner, Martin")
-      expect(ris[3]).to eq("DO  - 10.5438/4k3m-nyvg")
-      expect(ris[4]).to eq("UR  - https://blog.datacite.org/eating-your-own-dog-food/")
-      expect(ris[5]).to eq("AB  - Eating your own dog food is a slang term to describe that an organization should itself use the products and services it provides. For DataCite this means that we should use DOIs with appropriate metadata and strategies for long-term preservation for...")
-      expect(ris[6]).to eq("KW  - datacite")
-      expect(ris[9]).to eq("PY  - 2016")
-      expect(ris[10]).to eq("PB  - DataCite")
-      expect(ris[11]).to eq("SN  - 10.5438/0000-00ss")
-      expect(ris[12]).to eq("ER  - ")
-    end
-
-    it "BlogPosting Citeproc JSON" do
-      input = fixture_path + "citeproc.json"
-      subject = Bolognese::Metadata.new(input: input, from: "citeproc")
-      ris = subject.ris.split("\r\n")
-      expect(ris[0]).to eq("TY  - GEN")
-      expect(ris[1]).to eq("T1  - Eating your own Dog Food")
-      expect(ris[2]).to eq("T2  - DataCite Blog")
-      expect(ris[3]).to eq("AU  - Fenner, Martin")
-      expect(ris[4]).to eq("DO  - 10.5438/4k3m-nyvg")
-      expect(ris[5]).to eq("UR  - https://blog.datacite.org/eating-your-own-dog-food")
-      expect(ris[6]).to eq("AB  - Eating your own dog food is a slang term to describe that an organization should itself use the products and services it provides. For DataCite this means that we should use DOIs with appropriate metadata and strategies for long-term preservation for...")
-      expect(ris[7]).to eq("KW  - Phylogeny")
-      expect(ris[14]).to eq("PY  - 2016")
-      expect(ris[15]).to eq("PB  - DataCite")
-      expect(ris[16]).to eq("ER  - ")
-    end
-
-    it "BlogPosting DataCite JSON" do
-      input = fixture_path + "datacite.json"
-      subject = Bolognese::Metadata.new(input: input, from: "datacite_json")
-      ris = subject.ris.split("\r\n")
-      expect(ris[0]).to eq("TY  - RPRT")
-      expect(ris[1]).to eq("T1  - Eating your own Dog Food")
-      expect(ris[2]).to eq("AU  - Fenner, Martin")
-      expect(ris[3]).to eq("DO  - 10.5438/4k3m-nyvg")
-      expect(ris[4]).to eq("AB  - Eating your own dog food is a slang term to describe that an organization should itself use the products and services it provides. For DataCite this means that we should use DOIs with appropriate metadata and strategies for long-term preservation for...")
-      expect(ris[5]).to eq("KW  - datacite")
-      expect(ris[8]).to eq("PY  - 2016")
-      expect(ris[9]).to eq("PB  - DataCite")
-      expect(ris[10]).to eq("SN  - 10.5438/0000-00ss")
-      expect(ris[11]).to eq("ER  - ")
-    end
-
-    it "BlogPosting schema.org" do
-      input = "https://blog.datacite.org/eating-your-own-dog-food/"
-      subject = Bolognese::Metadata.new(input: input, from: "schema_org")
-      ris = subject.ris.split("\r\n")
-      expect(ris[0]).to eq("TY  - GEN")
-      expect(ris[1]).to eq("T1  - Eating your own Dog Food")
-      expect(ris[2]).to eq("AU  - Fenner, Martin")
-      expect(ris[3]).to eq("DO  - 10.5438/4k3m-nyvg")
-      expect(ris[4]).to eq("UR  - https://blog.datacite.org/eating-your-own-dog-food")
-      expect(ris[5]).to eq("AB  - Eating your own dog food is a slang term to describe that an organization should itself use the products and services it provides. For DataCite this means that we should use DOIs with appropriate metadata and strategies for long-term preservation for...")
-      expect(ris[6]).to eq("KW  - datacite")
-      expect(ris[10]).to eq("PY  - 2016")
-      expect(ris[11]).to eq("PB  - DataCite")
-      expect(ris[12]).to eq("SN  - 10.5438/0000-00ss")
-      expect(ris[13]).to eq("ER  - ")
-    end
-
-    it "Dataset" do
-      input = "10.5061/DRYAD.8515"
-      subject = Bolognese::Metadata.new(input: input, from: "datacite")
-      expect(subject.valid?).to be true
-      ris = subject.ris.split("\r\n")
-      expect(ris[0]).to eq("TY  - DATA")
-      expect(ris[1]).to eq("T1  - Data from: A new malaria agent in African hominids.")
-      expect(ris[2]).to eq("AU  - Ollomo, Benjamin")
-      expect(ris[10]).to eq("DO  - 10.5061/dryad.8515")
-      expect(ris[11]).to eq("UR  - https://datadryad.org/resource/doi:10.5061/dryad.8515")
-      expect(ris[13]).to eq("KW  - Malaria")
-      expect(ris[19]).to eq("PY  - 2011")
-      expect(ris[20]).to eq("PB  - Dryad Digital Repository")
-      expect(ris[21]).to eq("ER  - ")
-    end
-
-    it "maremma" do
-      input = "https://github.com/datacite/maremma"
-      subject = Bolognese::Metadata.new(input: input, from: "codemeta")
-      ris = subject.ris.split("\r\n")
-      expect(ris[0]).to eq("TY  - COMP")
-      expect(ris[1]).to eq("T1  - Maremma: a Ruby library for simplified network calls")
-      expect(ris[2]).to eq("AU  - Fenner, Martin")
-      expect(ris[3]).to eq("DO  - 10.5438/qeg0-3gm3")
-      expect(ris[4]).to eq("UR  - https://github.com/datacite/maremma")
-      expect(ris[5]).to eq("AB  - Ruby utility library for network requests. Based on Faraday and Excon, provides a wrapper for XML/JSON parsing and error handling. All successful responses are returned as hash with key data, all errors in a JSONAPI-friendly hash with key errors.")
-      expect(ris[6]).to eq("KW  - faraday")
-      expect(ris[9]).to eq("PY  - 2017")
-      expect(ris[10]).to eq("PB  - DataCite")
-      expect(ris[11]).to eq("ER  - ")
-    end
-
-    it "keywords with subject scheme" do
-      input = "https://doi.org/10.1594/pangaea.721193"
-      subject = Bolognese::Metadata.new(input: input, from: "datacite")
-      ris = subject.ris.split("\r\n")
-      expect(ris.first).to eq("TY  - DATA")
-      expect(ris).to include("T1  - Seawater carbonate chemistry and processes during experiments with Crassostrea gigas, 2007, supplement to: Kurihara, Haruko; Kato, Shoji; Ishimatsu, Atsushi (2007): Effects of increased seawater pCO2 on early development of the oyster Crassostrea gigas. Aquatic Biology, 1(1), 91-98")
-      expect(ris).to include("AU  - Kurihara, Haruko")
-      expect(ris).to include("DO  - 10.1594/pangaea.721193")
-      expect(ris).to include("UR  - https://doi.pangaea.de/10.1594/PANGAEA.721193")
-      expect(ris).to include("KW  - Animalia")
-      expect(ris).to include("KW  - Bottles or small containers/Aquaria ( 20 L)")
-      expect(ris).to include("PY  - 2007")
-      expect(ris).to include("PB  - PANGAEA - Data Publisher for Earth & Environmental Science")
-      expect(ris).to include("LA  - en")
-      expect(ris.last).to eq("ER  - ")
-    end
-  end
-end

data/spec/writers/schema_org_writer_spec.rb

@@ -1,322 +0,0 @@
-# frozen_string_literal: true
-
-require 'spec_helper'
-
-describe Bolognese::Metadata, vcr: true do
-  context "write metadata as schema_org" do
-    it "journal article" do
-      input = "10.7554/eLife.01567"
-      subject = Bolognese::Metadata.new(input: input, from: "crossref")
-      json = JSON.parse(subject.schema_org)
-      expect(json["@id"]).to eq("https://doi.org/10.7554/elife.01567")
-      expect(json["isPartOf"]).to eq("@type"=>"Periodical", "issn"=>"2050-084X")
-      expect(json["periodical"]).to eq("@type"=>"Journal", "identifier"=>"2050-084X", "identifierType"=>"ISSN", "name"=>"eLife", "volume"=>"3")
-      expect(json["citation"].length).to eq(26)
-      expect(json["citation"].first).to eq("@id"=>"https://doi.org/10.1038/nature02100", "@type"=>"CreativeWork")
-      expect(json["funder"]).to eq([{"name"=>"SystemsX", "@type"=>"Organization"},
-                                     {"name"=>"EMBO",
-                                      "@type"=>"Organization",
-                                      "@id"=>"https://doi.org/10.13039/501100003043"},
-                                     {"name"=>"Swiss National Science Foundation",
-                                      "@type"=>"Organization",
-                                      "@id"=>"https://doi.org/10.13039/501100001711"},
-                                     {"name"=>"University of Lausanne",
-                                      "@type"=>"Organization",
-                                      "@id"=>"https://doi.org/10.13039/501100006390"}])
-    end
-
-    it "maremma schema.org JSON" do
-      input = "https://github.com/datacite/maremma"
-      subject = Bolognese::Metadata.new(input: input, from: "codemeta")
-      json = JSON.parse(subject.schema_org)
-      expect(json["@id"]).to eq("https://doi.org/10.5438/qeg0-3gm3")
-      expect(json["@type"]).to eq("SoftwareSourceCode")
-      expect(json["name"]).to eq("Maremma: a Ruby library for simplified network calls")
-      expect(json["author"]).to eq("name"=>"Martin Fenner", "givenName"=>"Martin", "familyName"=>"Fenner", "@type"=>"Person", "@id"=>"https://orcid.org/0000-0003-0077-4738", "affiliation" => {"@type"=>"Organization", "name"=>"DataCite"})
-    end
-
-    it "Schema.org JSON" do
-      input = "https://doi.org/10.5281/ZENODO.48440"
-      subject = Bolognese::Metadata.new(input: input, from: "datacite")
-      json = JSON.parse(subject.schema_org)
-      expect(json["@id"]).to eq("https://doi.org/10.5281/zenodo.48440")
-      expect(json["name"]).to eq("Analysis Tools For Crossover Experiment Of Ui Using Choice Architecture")
-    end
-
-    it "Schema.org JSON isReferencedBy" do
-      input = "https://doi.org/10.5061/DRYAD.8515"
-      subject = Bolognese::Metadata.new(input: input, from: "datacite")
-      json = JSON.parse(subject.schema_org)
-      expect(json["@id"]).to eq("https://doi.org/10.5061/dryad.8515")
-      expect(json["@reverse"]).to eq("citation" => [{"@id"=>"https://doi.org/10.1371/journal.ppat.1000446", "@type"=>"ScholarlyArticle"}, {"@type"=>"ScholarlyArticle", "identifier"=>{"@type"=>"PropertyValue", "propertyID"=>"PMID", "value"=>"19478877"}}],
-        "isBasedOn" => [{"@id"=>"https://doi.org/10.1371/journal.ppat.1000446", "@type"=>"ScholarlyArticle"}, {"@type"=>"ScholarlyArticle", "identifier"=>{"@type"=>"PropertyValue", "propertyID"=>"PMID", "value"=>"19478877"}}])
-    end
-
-    it "Schema.org JSON IsSupplementTo" do
-      input = "https://doi.org/10.5517/CC8H01S"
-      subject = Bolognese::Metadata.new(input: input, from: "datacite")
-      json = JSON.parse(subject.schema_org)
-      expect(json["@id"]).to eq("https://doi.org/10.5517/cc8h01s")
-      expect(json["@reverse"]).to eq("isBasedOn"=>{"@id"=>"https://doi.org/10.1107/s1600536804021154", "@type"=>"ScholarlyArticle"})
-    end
-
-    it "rdataone" do
-      input = fixture_path + 'codemeta.json'
-      subject = Bolognese::Metadata.new(input: input, from: "codemeta")
-      json = JSON.parse(subject.schema_org)
-      expect(json["@id"]).to eq("https://doi.org/10.5063/f1m61h5x")
-      expect(json["@type"]).to eq("SoftwareSourceCode")
-      expect(json["name"]).to eq("R Interface to the DataONE REST API")
-      expect(json["author"]).to eq([{"name"=>"Matt Jones",
-                                     "givenName"=>"Matt",
-                                     "familyName"=>"Jones",
-                                     "@type"=>"Person",
-                                     "@id"=>"https://orcid.org/0000-0003-0077-4738",
-                                     "affiliation"=>{"@type"=>"Organization", "name"=>"NCEAS"}},
-                                    {"name"=>"Peter Slaughter",
-                                     "givenName"=>"Peter",
-                                     "familyName"=>"Slaughter",
-                                     "@type"=>"Person",
-                                     "@id"=>"https://orcid.org/0000-0002-2192-403X",
-                                     "affiliation"=>{"@type"=>"Organization", "name"=>"NCEAS"}},
-                                    {"name"=>"University Of California, Santa Barbara", "@type"=>"Organization"}])
-      expect(json["version"]).to eq("2.0.0")
-    end
-
-    it "Funding" do
-      input = "https://doi.org/10.5438/6423"
-      subject = Bolognese::Metadata.new(input: input, from: "datacite")
-      json = JSON.parse(subject.schema_org)
-      expect(json["@id"]).to eq("https://doi.org/10.5438/6423")
-      expect(json["hasPart"].length).to eq(25)
-      expect(json["hasPart"].first).to eq("@type"=>"CreativeWork", "@id"=>"https://doi.org/10.5281/zenodo.30799")
-      expect(json["funder"]).to eq("@id"=>"https://doi.org/10.13039/501100000780", "@type"=>"Organization", "name"=>"European Commission")
-    end
-
-    it "Funding OpenAIRE" do
-      input = "https://doi.org/10.5281/ZENODO.1239"
-      subject = Bolognese::Metadata.new(input: input, from: "datacite")
-      json = JSON.parse(subject.schema_org)
-      expect(json["@id"]).to eq("https://doi.org/10.5281/zenodo.1239")
-      expect(json["funder"]).to eq("@id"=>"https://doi.org/10.13039/501100000780", "@type"=>"Organization", "name"=>"European Commission")
-    end
-
-    it "subject scheme" do
-      input = "https://doi.org/10.4232/1.2745"
-      subject = Bolognese::Metadata.new(input: input, from: "datacite")
-      json = JSON.parse(subject.schema_org)
-      expect(json["@id"]).to eq("https://doi.org/10.4232/1.2745")
-      expect(json["name"]).to eq("Flash Eurobarometer 54 (Madrid Summit)")
-      expect(json["keywords"]).to eq("KAT12 International Institutions, Relations, Conditions")
-    end
-
-    it "subject scheme multiple keywords" do
-      input = "https://doi.org/10.1594/pangaea.721193"
-      subject = Bolognese::Metadata.new(input: input, from: "datacite")
-      json = JSON.parse(subject.schema_org)
-      expect(json["@id"]).to eq("https://doi.org/10.1594/pangaea.721193")
-      expect(json["name"]).to eq("Seawater carbonate chemistry and processes during experiments with Crassostrea gigas, 2007, supplement to: Kurihara, Haruko; Kato, Shoji; Ishimatsu, Atsushi (2007): Effects of increased seawater pCO2 on early development of the oyster Crassostrea gigas. Aquatic Biology, 1(1), 91-98")
-      expect(json["keywords"]).to eq("Animalia, Bottles or small containers/Aquaria ( 20 L), Calcification/Dissolution, Coast and continental shelf, Crassostrea gigas, Development, Growth/Morphology, Laboratory experiment, Mollusca, North Pacific, Pelagos, Single species, Temperate, Zooplankton, Experimental treatment, Carbonate system computation flag, Temperature, water, Salinity, pH, Alkalinity, total, Carbon, inorganic, dissolved, Carbon dioxide, Bicarbonate ion, Carbonate ion, Partial pressure of carbon dioxide (water) at sea surface temperature (wet air), Fugacity of carbon dioxide (water) at sea surface temperature (wet air), Aragonite saturation state, Calcite saturation state, Proportion, Crassostrea gigas, larvae length, Crassostrea gigas, larvae height, Crassostrea gigas, non mineralized, Crassostrea gigas, partially mineralized, Crassostrea gigas, fully mineralized, Calculated using seacarb after Nisumaa et al. (2010), Refractometer (Atago 100-S), pH meter (Mettler Toledo), pH meter (PHM290, Radiometer), Measured, European Project on Ocean Acidification (EPOCA), European network of excellence for Ocean Ecosystems Analysis (EUR-OCEANS), Ocean Acidification International Coordination Centre (OA-ICC)")
-    end
-
-    it "author is organization" do
-      input = fixture_path + 'gtex.xml'
-      url = "https://ors.datacite.org/doi:/10.25491/9hx8-ke93"
-      content_url = "https://storage.googleapis.com/gtex_analysis_v7/single_tissue_eqtl_data/GTEx_Analysis_v7_eQTL_expression_matrices.tar.gz"  
-      subject = Bolognese::Metadata.new(input: input, url: url, content_url: content_url, from: "datacite")
-      json = JSON.parse(subject.schema_org)
-      expect(json["@id"]).to eq("https://doi.org/10.25491/9hx8-ke93")
-      expect(json["author"]).to eq("@type"=>"Organization", "name"=>"The GTEx Consortium")
-      expect(json["url"]).to eq("https://ors.datacite.org/doi:/10.25491/9hx8-ke93")
-      expect(json["encodingFormat"]).to eq("application/tar")
-      expect(json["contentSize"]).to eq("15.7M")
-      expect(json["contentUrl"]).to eq("https://storage.googleapis.com/gtex_analysis_v7/single_tissue_eqtl_data/GTEx_Analysis_v7_eQTL_expression_matrices.tar.gz")
-      expect(json["includedInDataCatalog"]).to eq("@id"=>"https://www.ebi.ac.uk/miriam/main/datatypes/MIR:00000663", "@type"=>"DataCatalog", "name"=>"GTEx")
-      expect(json["@reverse"]).to eq("isBasedOn"=>{"@id"=>"https://doi.org/10.1038/nmeth.4407", "@type"=>"ScholarlyArticle"})
-    end
-
-    it "series information" do
-      input = "10.4229/23RDEUPVSEC2008-5CO.8.3"
-      subject = Bolognese::Metadata.new(input: input, from: "datacite")
-      json = JSON.parse(subject.schema_org)
-      expect(json["@id"]).to eq("https://doi.org/10.4229/23rdeupvsec2008-5co.8.3")
-      expect(json["@type"]).to eq("ScholarlyArticle")
-      expect(json["name"]).to eq("Rural Electrification With Hybrid Power Systems Based on Renewables - Technical System Configurations From the Point of View of the European Industry")
-      expect(json["author"].count).to eq(3)
-      expect(json["author"].first).to eq("@type"=>"Person", "name"=>"P. Llamas", "givenName"=>"P.", "familyName"=>"Llamas")
-      expect(json["periodical"]).to eq("@type"=>"Series", "firstPage"=>"Spain; 3353", "lastPage"=>"3356", "name"=>"23rd European Photovoltaic Solar Energy Conference and Exhibition", "volume"=>"1-5 September 2008")
-    end
-
-    it "data catalog" do
-      input = "10.25491/8KMC-G314"
-      subject = Bolognese::Metadata.new(input: input, from: "datacite")
-      json = JSON.parse(subject.schema_org)
-      expect(json["@id"]).to eq("https://doi.org/10.25491/8kmc-g314")
-      expect(json["@type"]).to eq("Dataset")
-      expect(json["name"]).to eq("Covariates used in eQTL analysis. Includes genotyping principal components and PEER factors")
-      expect(json["author"]).to eq("@type"=>"Organization", "name"=>"The GTEx Consortium")
-      expect(json["includedInDataCatalog"]).to eq("@type"=>"DataCatalog", "name"=>"GTEx")
-      expect(json["identifier"]).to eq([{"@type"=>"PropertyValue", "propertyID"=>"DOI", "value"=>"https://doi.org/10.25491/8kmc-g314"},{"@type"=>"PropertyValue", "propertyID"=>"md5", "value"=>"c7c89fe7366d50cd75448aa603c9de58"}])
-      expect(json["contentUrl"]).to eq("https://storage.googleapis.com/gtex_analysis_v7/single_tissue_eqtl_data/GTEx_Analysis_v7_eQTL_covariates.tar.gz")
-    end
-
-    it "alternate identifiers" do
-      input = "10.23725/8na3-9s47"
-      subject = Bolognese::Metadata.new(input: input, from: "datacite")
-      json = JSON.parse(subject.schema_org)
-      expect(json["@id"]).to eq("https://doi.org/10.23725/8na3-9s47")
-      expect(json["@type"]).to eq("Dataset")
-      expect(json["name"]).to eq("NWD165827.recab.cram")
-      expect(json["author"]).to eq("name"=>"TOPMed")
-      expect(json["includedInDataCatalog"]).to be_nil
-      expect(json["identifier"]).to eq(
-        [{"@type"=>"PropertyValue",
-          "propertyID"=>"DOI",
-          "value"=>"https://doi.org/10.23725/8na3-9s47"},
-         {"@type"=>"PropertyValue",
-          "propertyID"=>"minid",
-          "value"=>"ark:/99999/fk41CrU4eszeLUDe"},
-         {"@type"=>"PropertyValue",
-          "propertyID"=>"dataguid",
-          "value"=>"dg.4503/c3d66dc9-58da-411c-83c4-dd656aa3c4b7"},
-         {"@type"=>"PropertyValue",
-          "propertyID"=>"md5",
-          "value"=>"3b33f6b9338fccab0901b7d317577ea3"}]
-      )
-      expect(json["contentUrl"]).to include("s3://cgp-commons-public/topmed_open_access/197bc047-e917-55ed-852d-d563cdbc50e4/NWD165827.recab.cram", "gs://topmed-irc-share/public/NWD165827.recab.cram")
-    end
-
-    it "geo_location_point" do
-      input = fixture_path + 'datacite-example-geolocation-2.xml'
-      doi = "10.6071/Z7WC73"
-      subject = Bolognese::Metadata.new(input: input, doi: doi)
-      json = JSON.parse(subject.schema_org)
-      expect(json["@id"]).to eq("https://doi.org/10.6071/z7wc73")
-      expect(json["@type"]).to eq("Dataset")
-      expect(json["name"]).to eq("Southern Sierra Critical Zone Observatory (SSCZO), Providence Creek meteorological data, soil moisture and temperature, snow depth and air temperature")
-      expect(json["author"].length).to eq(6)
-      expect(json["author"][2]).to eq("@id"=>"https://orcid.org/0000-0002-8862-1404", "@type"=>"Person", "familyName"=>"Stacy", "givenName"=>"Erin", "name"=>"Erin Stacy", "affiliation" => {"@type"=>"Organization", "name"=>"UC Merced"})
-      expect(json["includedInDataCatalog"]).to be_nil
-      expect(json["spatialCoverage"]).to eq([{"@type"=>"Place",
-        "geo"=>
-        {"@type"=>"GeoCoordinates",
-         "address"=>"Providence Creek (Lower, Upper and P301)",
-         "latitude"=>"37.047756",
-         "longitude"=>"-119.221094"}},
-        {"@type"=>"Place",
-         "geo"=>
-        {"@type"=>"GeoShape",
-         "address"=>"Providence Creek (Lower, Upper and P301)",
-         "box"=>"37.046 -119.211 37.075 -119.182"}}])
-    end
-
-    it "geo_location_box" do
-      input = "10.1594/PANGAEA.842237"
-      subject = Bolognese::Metadata.new(input: input, from: "datacite")
-      json = JSON.parse(subject.schema_org)
-      expect(json["@id"]).to eq("https://doi.org/10.1594/pangaea.842237")
-      expect(json["@type"]).to eq("Dataset")
-      expect(json["name"]).to eq("Registry of all stations from the Tara Oceans Expedition (2009-2013)")
-      expect(json["author"]).to eq([{"@type"=>"Person",
-        "familyName"=>"Tara Oceans Consortium",
-        "givenName"=>"Coordinators",
-        "name"=>"Coordinators Tara Oceans Consortium"},
-       {"@type"=>"Person",
-        "familyName"=>"Tara Oceans Expedition",
-        "givenName"=>"Participants",
-        "name"=>"Participants Tara Oceans Expedition"}])
-      expect(json["includedInDataCatalog"]).to be_nil
-      expect(json["identifier"]).to eq("@type"=>"PropertyValue", "propertyID"=>"DOI", "value"=>"https://doi.org/10.1594/pangaea.842237")
-      expect(json["spatialCoverage"]).to eq("@type"=>"Place", "geo"=>{"@type"=>"GeoShape", "box"=>"-64.3088 -168.5182 79.6753 174.9006"})
-    end
-
-    it "geo_location_polygon" do
-      input = fixture_path + 'datacite-example-polygon-v4.1.xml'
-      subject = Bolognese::Metadata.new(input: input)
-      json = JSON.parse(subject.schema_org)
-      expect(json["@id"]).to eq("https://doi.org/10.5072/example-polygon")
-      expect(json["@type"]).to eq("Dataset")
-      expect(json["name"]).to eq("Meteo measurements at the Sand Motor")
-      expect(json["author"]).to eq("@type"=>"Person", "familyName"=>"Den Heijer", "givenName"=>"C", "name"=>"C Den Heijer")
-      expect(json["includedInDataCatalog"]).to be_nil
-      expect(json["identifier"]).to eq("@type"=>"PropertyValue", "propertyID"=>"DOI", "value"=>"https://doi.org/10.5072/example-polygon")
-      expect(json["spatialCoverage"].dig("geo", "polygon").length).to eq(34)
-      expect(json["spatialCoverage"].dig("geo", "polygon").first).to eq(["4.1738852605822", "52.03913926329928"])
-    end
-
-    it "from schema_org gtex" do
-      input = fixture_path + 'schema_org_gtex.json'
-      subject = Bolognese::Metadata.new(input: input, from: "schema_org")
-      json = JSON.parse(subject.schema_org)
-      expect(json["@id"]).to eq("https://doi.org/10.25491/d50j-3083")
-      expect(json["@type"]).to eq("Dataset")
-      expect(json["identifier"]).to eq([{"@type"=>"PropertyValue", "propertyID"=>"DOI", "value"=>"https://doi.org/10.25491/d50j-3083"}, {"@type"=>"PropertyValue", "propertyID"=>"md5", "value"=>"687610993"}])
-      expect(json["url"]).to eq("https://ors.datacite.org/doi:/10.25491/d50j-3083")
-      expect(json["additionalType"]).to eq("Gene expression matrices")
-      expect(json["name"]).to eq("Fully processed, filtered and normalized gene expression matrices (in BED format) for each tissue, which were used as input into FastQTL for eQTL discovery")
-      expect(json["version"]).to eq("v7")
-      expect(json["author"]).to eq("@type"=>"Organization", "name"=>"The GTEx Consortium")
-      expect(json["keywords"]).to eq("gtex, annotation, phenotype, gene regulation, transcriptomics")
-      expect(json["datePublished"]).to eq("2017")
-      expect(json["contentUrl"]).to eq("https://storage.googleapis.com/gtex_analysis_v7/single_tissue_eqtl_data/GTEx_Analysis_v7_eQTL_expression_matrices.tar.gz")
-      expect(json["schemaVersion"]).to eq("http://datacite.org/schema/kernel-4")
-      expect(json["includedInDataCatalog"]).to eq("@type"=>"DataCatalog", "name"=>"GTEx")
-      expect(json["publisher"]).to eq("@type"=>"Organization", "name"=>"GTEx")
-      expect(json["funder"]).to eq([{"@id"=>"https://doi.org/10.13039/100000052",
-        "name"=>"Common Fund of the Office of the Director of the NIH",
-        "@type"=>"Organization"},
-       {"@id"=>"https://doi.org/10.13039/100000054",
-        "name"=>"National Cancer Institute (NCI)",
-        "@type"=>"Organization"},
-       {"@id"=>"https://doi.org/10.13039/100000051",
-        "name"=>"National Human Genome Research Institute (NHGRI)",
-        "@type"=>"Organization"},
-       {"@id"=>"https://doi.org/10.13039/100000050",
-        "name"=>"National Heart, Lung, and Blood Institute (NHLBI)",
-        "@type"=>"Organization"},
-       {"@id"=>"https://doi.org/10.13039/100000026",
-        "name"=>"National Institute on Drug Abuse (NIDA)",
-        "@type"=>"Organization"},
-       {"@id"=>"https://doi.org/10.13039/100000025",
-        "name"=>"National Institute of Mental Health (NIMH)",
-        "@type"=>"Organization"},
-       {"@id"=>"https://doi.org/10.13039/100000065",
-        "name"=>"National Institute of Neurological Disorders and Stroke (NINDS)",
-        "@type"=>"Organization"}])
-      expect(json["provider"]).to eq("@type"=>"Organization", "name"=>"DataCite")
-    end
-
-    it "from schema_org topmed" do
-      input = fixture_path + 'schema_org_topmed.json'
-      subject = Bolognese::Metadata.new(input: input, from: "schema_org")
-      json = JSON.parse(subject.schema_org)
-      expect(json["@id"]).to eq("https://doi.org/10.23725/8na3-9s47")
-      expect(json["@type"]).to eq("Dataset")
-      expect(json["identifier"]).to eq(
-        [{"@type"=>"PropertyValue",
-          "propertyID"=>"DOI",
-          "value"=>"https://doi.org/10.23725/8na3-9s47"},
-         {"@type"=>"PropertyValue",
-          "propertyID"=>"md5",
-          "value"=>"3b33f6b9338fccab0901b7d317577ea3"},
-         {"@type"=>"PropertyValue",
-          "propertyID"=>"minid",
-          "value"=>"ark:/99999/fk41CrU4eszeLUDe"},
-         {"@type"=>"PropertyValue",
-          "propertyID"=>"dataguid",
-          "value"=>"dg.4503/c3d66dc9-58da-411c-83c4-dd656aa3c4b7"}])
-      expect(json["url"]).to eq("https://ors.datacite.org/doi:/10.23725/8na3-9s47")
-      expect(json["additionalType"]).to eq("CRAM file")
-      expect(json["name"]).to eq("NWD165827.recab.cram")
-      expect(json["author"]).to eq("@type"=>"Organization", "name"=>"TOPMed IRC")
-      expect(json["keywords"]).to eq("topmed, whole genome sequencing")
-      expect(json["datePublished"]).to eq("2017-11-30")
-      expect(json["contentUrl"]).to eq(["s3://cgp-commons-public/topmed_open_access/197bc047-e917-55ed-852d-d563cdbc50e4/NWD165827.recab.cram", "gs://topmed-irc-share/public/NWD165827.recab.cram"])
-      expect(json["schemaVersion"]).to eq("http://datacite.org/schema/kernel-4")
-      expect(json["publisher"]).to eq("@type"=>"Organization", "name"=>"TOPMed")
-      expect(json["citation"]).to eq("@id"=>"https://doi.org/10.23725/2g4s-qv04", "@type"=>"Dataset")
-      expect(json["funder"]).to eq("@id"=>"https://doi.org/10.13039/100000050", "@type"=>"Organization", "name"=>"National Heart, Lung, and Blood Institute (NHLBI)")
-      expect(json["provider"]).to eq("@type"=>"Organization", "name"=>"DataCite")
-    end
-  end
-end