bolognese 1.3.1 → 2.3.9

This diff represents the content of publicly available package versions that have been released to one of the supported registries. The information contained in this diff is provided for informational purposes only and reflects changes between package versions as they appear in their respective public registries.
Files changed (527) hide show
  1. checksums.yaml +4 -4
  2. data/.github/workflows/build.yml +9 -0
  3. data/.github/workflows/changelog.yml +36 -0
  4. data/.github/workflows/ci.yml +22 -0
  5. data/.github/workflows/pull-request.yml +9 -0
  6. data/.github/workflows/release.yml +32 -0
  7. data/.gitignore +3 -0
  8. data/.rubocop.yml +658 -0
  9. data/CHANGELOG.md +1864 -0
  10. data/Gemfile.lock +163 -129
  11. data/README.md +3 -2
  12. data/bolognese.gemspec +22 -20
  13. data/lib/bolognese/author_utils.rb +49 -25
  14. data/lib/bolognese/cli.rb +6 -4
  15. data/lib/bolognese/datacite_utils.rb +143 -17
  16. data/lib/bolognese/doi_utils.rb +14 -9
  17. data/lib/bolognese/metadata.rb +27 -19
  18. data/lib/bolognese/metadata_utils.rb +25 -6
  19. data/lib/bolognese/readers/bibtex_reader.rb +29 -34
  20. data/lib/bolognese/readers/citeproc_reader.rb +27 -35
  21. data/lib/bolognese/readers/codemeta_reader.rb +12 -13
  22. data/lib/bolognese/readers/crosscite_reader.rb +4 -1
  23. data/lib/bolognese/readers/crossref_reader.rb +163 -67
  24. data/lib/bolognese/readers/datacite_json_reader.rb +4 -1
  25. data/lib/bolognese/readers/datacite_reader.rb +150 -38
  26. data/lib/bolognese/readers/npm_reader.rb +115 -0
  27. data/lib/bolognese/readers/ris_reader.rb +10 -14
  28. data/lib/bolognese/readers/schema_org_reader.rb +58 -25
  29. data/lib/bolognese/utils.rb +502 -63
  30. data/lib/bolognese/version.rb +1 -1
  31. data/lib/bolognese/writers/bibtex_writer.rb +4 -3
  32. data/lib/bolognese/writers/codemeta_writer.rb +6 -5
  33. data/lib/bolognese/writers/csv_writer.rb +1 -1
  34. data/lib/bolognese/writers/datacite_json_writer.rb +3 -1
  35. data/lib/bolognese/writers/jats_writer.rb +9 -4
  36. data/lib/bolognese/writers/ris_writer.rb +2 -2
  37. data/lib/bolognese/writers/schema_org_writer.rb +11 -7
  38. data/lib/bolognese.rb +2 -1
  39. data/package.json +12 -0
  40. data/resources/kernel-4/include/datacite-contributorType-v4.xsd +24 -22
  41. data/resources/kernel-4/include/datacite-dateType-v4.xsd +14 -12
  42. data/resources/kernel-4/include/datacite-descriptionType-v4.xsd +6 -6
  43. data/resources/kernel-4/include/datacite-funderIdentifierType-v4.xsd +5 -5
  44. data/resources/kernel-4/include/datacite-nameType-v4.xsd +2 -2
  45. data/resources/kernel-4/include/datacite-numberType-v4.xsd +12 -0
  46. data/resources/kernel-4/include/datacite-relatedIdentifierType-v4.xsd +24 -21
  47. data/resources/kernel-4/include/datacite-relationType-v4.xsd +43 -35
  48. data/resources/kernel-4/include/datacite-resourceType-v4.xsd +38 -17
  49. data/resources/kernel-4/include/datacite-titleType-v4.xsd +5 -5
  50. data/resources/kernel-4/metadata.xsd +349 -146
  51. data/resources/kernel-4.3/metadata.xsd +39 -8
  52. data/resources/kernel-4.4/include/datacite-contributorType-v4.xsd +35 -0
  53. data/resources/kernel-4.4/include/datacite-dateType-v4.xsd +25 -0
  54. data/resources/kernel-4.4/include/datacite-descriptionType-v4.xsd +19 -0
  55. data/resources/kernel-4.4/include/datacite-funderIdentifierType-v4.xsd +16 -0
  56. data/resources/kernel-4.4/include/datacite-nameType-v4.xsd +10 -0
  57. data/resources/kernel-4.4/include/datacite-numberType-v4.xsd +12 -0
  58. data/resources/kernel-4.4/include/datacite-relatedIdentifierType-v4.xsd +34 -0
  59. data/resources/kernel-4.4/include/datacite-relationType-v4.xsd +51 -0
  60. data/resources/kernel-4.4/include/datacite-resourceType-v4.xsd +43 -0
  61. data/resources/kernel-4.4/include/datacite-titleType-v4.xsd +14 -0
  62. data/resources/kernel-4.4/include/xml.xsd +286 -0
  63. data/resources/kernel-4.4/metadata.xsd +707 -0
  64. data/resources/kernel-4.5/include/datacite-contributorType-v4.xsd +35 -0
  65. data/resources/kernel-4.5/include/datacite-dateType-v4.xsd +25 -0
  66. data/resources/kernel-4.5/include/datacite-descriptionType-v4.xsd +19 -0
  67. data/resources/kernel-4.5/include/datacite-funderIdentifierType-v4.xsd +16 -0
  68. data/resources/kernel-4.5/include/datacite-nameType-v4.xsd +10 -0
  69. data/resources/kernel-4.5/include/datacite-numberType-v4.xsd +12 -0
  70. data/resources/kernel-4.5/include/datacite-relatedIdentifierType-v4.xsd +34 -0
  71. data/resources/kernel-4.5/include/datacite-relationType-v4.xsd +53 -0
  72. data/resources/kernel-4.5/include/datacite-resourceType-v4.xsd +45 -0
  73. data/resources/kernel-4.5/include/datacite-titleType-v4.xsd +14 -0
  74. data/resources/kernel-4.5/include/xml.xsd +286 -0
  75. data/resources/kernel-4.5/metadata.xsd +711 -0
  76. data/resources/kernel-4.6/include/datacite-contributorType-v4.xsd +37 -0
  77. data/resources/kernel-4.6/include/datacite-dateType-v4.xsd +27 -0
  78. data/resources/kernel-4.6/include/datacite-descriptionType-v4.xsd +19 -0
  79. data/resources/kernel-4.6/include/datacite-funderIdentifierType-v4.xsd +16 -0
  80. data/resources/kernel-4.6/include/datacite-nameType-v4.xsd +10 -0
  81. data/resources/kernel-4.6/include/datacite-numberType-v4.xsd +12 -0
  82. data/resources/kernel-4.6/include/datacite-relatedIdentifierType-v4.xsd +37 -0
  83. data/resources/kernel-4.6/include/datacite-relationType-v4.xsd +57 -0
  84. data/resources/kernel-4.6/include/datacite-resourceType-v4.xsd +49 -0
  85. data/resources/kernel-4.6/include/datacite-titleType-v4.xsd +14 -0
  86. data/resources/kernel-4.6/include/xml.xsd +286 -0
  87. data/resources/kernel-4.6/metadata.xsd +712 -0
  88. data/resources/oecd/dfg-mappings.json +1866 -0
  89. data/resources/oecd/for-mappings.json +1101 -0
  90. data/resources/oecd/fos-mappings.json +198 -0
  91. data/resources/schema_org/jsonldcontext.json +1069 -232
  92. data/resources/spdx/licenses.json +5297 -0
  93. metadata +160 -510
  94. data/.travis.yml +0 -33
  95. data/spec/array_spec.rb +0 -22
  96. data/spec/author_utils_spec.rb +0 -188
  97. data/spec/cli_spec.rb +0 -219
  98. data/spec/datacite_utils_spec.rb +0 -148
  99. data/spec/doi_utils_spec.rb +0 -302
  100. data/spec/find_from_format_spec.rb +0 -98
  101. data/spec/fixtures/aida.json +0 -82
  102. data/spec/fixtures/citeproc-no-author.json +0 -26
  103. data/spec/fixtures/citeproc-no-categories.json +0 -21
  104. data/spec/fixtures/citeproc.json +0 -30
  105. data/spec/fixtures/codemeta.json +0 -86
  106. data/spec/fixtures/codemeta_v2.json +0 -86
  107. data/spec/fixtures/crosscite.json +0 -63
  108. data/spec/fixtures/crossref.bib +0 -14
  109. data/spec/fixtures/crossref.ris +0 -15
  110. data/spec/fixtures/crossref.xml +0 -606
  111. data/spec/fixtures/datacite-example-affiliation.xml +0 -114
  112. data/spec/fixtures/datacite-example-complicated-v3.0.xml +0 -48
  113. data/spec/fixtures/datacite-example-complicated-v4.0.xml +0 -54
  114. data/spec/fixtures/datacite-example-complicated-v4.1.xml +0 -57
  115. data/spec/fixtures/datacite-example-geolocation-2.xml +0 -141
  116. data/spec/fixtures/datacite-example-geolocation.xml +0 -66
  117. data/spec/fixtures/datacite-example-polygon-v4.1.xml +0 -163
  118. data/spec/fixtures/datacite-geolocation-empty.xml +0 -159
  119. data/spec/fixtures/datacite-metadata-sample-complicated-v2.2.xml +0 -52
  120. data/spec/fixtures/datacite-multiple-language.xml +0 -38
  121. data/spec/fixtures/datacite-multiple-rights.xml +0 -59
  122. data/spec/fixtures/datacite-seriesinformation.xml +0 -41
  123. data/spec/fixtures/datacite-xml-lang.xml +0 -51
  124. data/spec/fixtures/datacite.json +0 -83
  125. data/spec/fixtures/datacite.xml +0 -40
  126. data/spec/fixtures/datacite_dataset.xml +0 -58
  127. data/spec/fixtures/datacite_malformed_creator.xml +0 -52
  128. data/spec/fixtures/datacite_missing_creator.xml +0 -33
  129. data/spec/fixtures/datacite_schema_3.xml +0 -58
  130. data/spec/fixtures/datacite_software.json +0 -21
  131. data/spec/fixtures/datacite_software_missing_comma.json +0 -18
  132. data/spec/fixtures/datacite_software_overlapping_keys.json +0 -18
  133. data/spec/fixtures/funding_reference.xml +0 -53
  134. data/spec/fixtures/gtex.xml +0 -71
  135. data/spec/fixtures/maremma/codemeta.json +0 -36
  136. data/spec/fixtures/nist.xml +0 -35
  137. data/spec/fixtures/ns0.xml +0 -2
  138. data/spec/fixtures/pure.bib +0 -14
  139. data/spec/fixtures/pure.ris +0 -15
  140. data/spec/fixtures/ris_bug.ris +0 -9
  141. data/spec/fixtures/schema_4.0.xml +0 -140
  142. data/spec/fixtures/schema_org.json +0 -44
  143. data/spec/fixtures/schema_org_geolocation.json +0 -82
  144. data/spec/fixtures/schema_org_geoshape.json +0 -550
  145. data/spec/fixtures/schema_org_gtex.json +0 -76
  146. data/spec/fixtures/schema_org_list.json +0 -12628
  147. data/spec/fixtures/schema_org_tdl_iodp_invalid_authors.json +0 -25
  148. data/spec/fixtures/schema_org_topmed.json +0 -54
  149. data/spec/fixtures/schema_org_type_as_array.json +0 -41
  150. data/spec/fixtures/vcr_cassettes/Bolognese_CLI/convert_from_id/crossref/default.yml +0 -95
  151. data/spec/fixtures/vcr_cassettes/Bolognese_CLI/convert_from_id/crossref/to_bibtex.yml +0 -95
  152. data/spec/fixtures/vcr_cassettes/Bolognese_CLI/convert_from_id/crossref/to_citation.yml +0 -95
  153. data/spec/fixtures/vcr_cassettes/Bolognese_CLI/convert_from_id/crossref/to_crossref.yml +0 -95
  154. data/spec/fixtures/vcr_cassettes/Bolognese_CLI/convert_from_id/crossref/to_datacite.yml +0 -95
  155. data/spec/fixtures/vcr_cassettes/Bolognese_CLI/convert_from_id/crossref/to_jats.yml +0 -95
  156. data/spec/fixtures/vcr_cassettes/Bolognese_CLI/convert_from_id/crossref/to_schema_org.yml +0 -95
  157. data/spec/fixtures/vcr_cassettes/Bolognese_CLI/convert_from_id/datacite/default.yml +0 -93
  158. data/spec/fixtures/vcr_cassettes/Bolognese_CLI/convert_from_id/datacite/to_bibtex.yml +0 -93
  159. data/spec/fixtures/vcr_cassettes/Bolognese_CLI/convert_from_id/datacite/to_citation.yml +0 -93
  160. data/spec/fixtures/vcr_cassettes/Bolognese_CLI/convert_from_id/datacite/to_datacite.yml +0 -93
  161. data/spec/fixtures/vcr_cassettes/Bolognese_CLI/convert_from_id/datacite/to_datacite_json.yml +0 -93
  162. data/spec/fixtures/vcr_cassettes/Bolognese_CLI/convert_from_id/datacite/to_jats.yml +0 -93
  163. data/spec/fixtures/vcr_cassettes/Bolognese_CLI/convert_from_id/datacite/to_schema_org.yml +0 -93
  164. data/spec/fixtures/vcr_cassettes/Bolognese_CLI/convert_from_id/schema_org/default.yml +0 -111
  165. data/spec/fixtures/vcr_cassettes/Bolognese_CLI/convert_from_id/schema_org/to_bibtex.yml +0 -111
  166. data/spec/fixtures/vcr_cassettes/Bolognese_CLI/convert_from_id/schema_org/to_datacite.yml +0 -111
  167. data/spec/fixtures/vcr_cassettes/Bolognese_CLI/convert_from_id/schema_org/to_schema_org.yml +0 -111
  168. data/spec/fixtures/vcr_cassettes/Bolognese_CLI/find_from_format_by_id/crossref.yml +0 -47
  169. data/spec/fixtures/vcr_cassettes/Bolognese_CLI/find_from_format_by_id/datacite.yml +0 -47
  170. data/spec/fixtures/vcr_cassettes/Bolognese_CLI/find_from_format_by_id/jalc.yml +0 -47
  171. data/spec/fixtures/vcr_cassettes/Bolognese_CLI/find_from_format_by_id/kisti.yml +0 -47
  172. data/spec/fixtures/vcr_cassettes/Bolognese_CLI/find_from_format_by_id/medra.yml +0 -47
  173. data/spec/fixtures/vcr_cassettes/Bolognese_CLI/find_from_format_by_id/op.yml +0 -47
  174. data/spec/fixtures/vcr_cassettes/Bolognese_Metadata/authors_as_string/author.yml +0 -44
  175. data/spec/fixtures/vcr_cassettes/Bolognese_Metadata/authors_as_string/no_author.yml +0 -44
  176. data/spec/fixtures/vcr_cassettes/Bolognese_Metadata/authors_as_string/single_author.yml +0 -44
  177. data/spec/fixtures/vcr_cassettes/Bolognese_Metadata/authors_as_string/with_organization.yml +0 -44
  178. data/spec/fixtures/vcr_cassettes/Bolognese_Metadata/change_datacite_metadata/change_state.yml +0 -93
  179. data/spec/fixtures/vcr_cassettes/Bolognese_Metadata/change_datacite_metadata/change_title.yml +0 -93
  180. data/spec/fixtures/vcr_cassettes/Bolognese_Metadata/change_metadata_as_datacite_xml/change_description.yml +0 -51
  181. data/spec/fixtures/vcr_cassettes/Bolognese_Metadata/change_metadata_as_datacite_xml/change_license.yml +0 -51
  182. data/spec/fixtures/vcr_cassettes/Bolognese_Metadata/change_metadata_as_datacite_xml/change_license_name.yml +0 -51
  183. data/spec/fixtures/vcr_cassettes/Bolognese_Metadata/change_metadata_as_datacite_xml/change_license_url.yml +0 -51
  184. data/spec/fixtures/vcr_cassettes/Bolognese_Metadata/change_metadata_as_datacite_xml/change_state.yml +0 -51
  185. data/spec/fixtures/vcr_cassettes/Bolognese_Metadata/change_metadata_as_datacite_xml/validates_against_schema.yml +0 -51
  186. data/spec/fixtures/vcr_cassettes/Bolognese_Metadata/change_metadata_as_datacite_xml/with_data_citation.yml +0 -51
  187. data/spec/fixtures/vcr_cassettes/Bolognese_Metadata/doi_api_url/doi.yml +0 -44
  188. data/spec/fixtures/vcr_cassettes/Bolognese_Metadata/doi_api_url/doi_with_protocol.yml +0 -44
  189. data/spec/fixtures/vcr_cassettes/Bolognese_Metadata/doi_api_url/dx_doi_org_url.yml +0 -44
  190. data/spec/fixtures/vcr_cassettes/Bolognese_Metadata/doi_api_url/force_test_resolver.yml +0 -44
  191. data/spec/fixtures/vcr_cassettes/Bolognese_Metadata/doi_api_url/https_url.yml +0 -44
  192. data/spec/fixtures/vcr_cassettes/Bolognese_Metadata/doi_api_url/test_resolver.yml +0 -44
  193. data/spec/fixtures/vcr_cassettes/Bolognese_Metadata/doi_api_url/test_resolver_http.yml +0 -44
  194. data/spec/fixtures/vcr_cassettes/Bolognese_Metadata/doi_from_url/doi.yml +0 -44
  195. data/spec/fixtures/vcr_cassettes/Bolognese_Metadata/doi_from_url/doi_with_special_characters.yml +0 -44
  196. data/spec/fixtures/vcr_cassettes/Bolognese_Metadata/doi_from_url/not_a_doi.yml +0 -44
  197. data/spec/fixtures/vcr_cassettes/Bolognese_Metadata/doi_from_url/sandbox_url.yml +0 -44
  198. data/spec/fixtures/vcr_cassettes/Bolognese_Metadata/doi_from_url/url.yml +0 -44
  199. data/spec/fixtures/vcr_cassettes/Bolognese_Metadata/doi_registration_agency/crossref.yml +0 -88
  200. data/spec/fixtures/vcr_cassettes/Bolognese_Metadata/doi_registration_agency/datacite.yml +0 -88
  201. data/spec/fixtures/vcr_cassettes/Bolognese_Metadata/doi_registration_agency/jalc.yml +0 -88
  202. data/spec/fixtures/vcr_cassettes/Bolognese_Metadata/doi_registration_agency/kisti.yml +0 -88
  203. data/spec/fixtures/vcr_cassettes/Bolognese_Metadata/doi_registration_agency/medra.yml +0 -88
  204. data/spec/fixtures/vcr_cassettes/Bolognese_Metadata/doi_registration_agency/not_a_valid_prefix.yml +0 -44
  205. data/spec/fixtures/vcr_cassettes/Bolognese_Metadata/doi_registration_agency/not_found.yml +0 -88
  206. data/spec/fixtures/vcr_cassettes/Bolognese_Metadata/doi_registration_agency/op.yml +0 -88
  207. data/spec/fixtures/vcr_cassettes/Bolognese_Metadata/doi_resolver/doi.yml +0 -44
  208. data/spec/fixtures/vcr_cassettes/Bolognese_Metadata/doi_resolver/doi_with_protocol.yml +0 -44
  209. data/spec/fixtures/vcr_cassettes/Bolognese_Metadata/doi_resolver/dx_doi_org_url.yml +0 -44
  210. data/spec/fixtures/vcr_cassettes/Bolognese_Metadata/doi_resolver/force_test_resolver.yml +0 -44
  211. data/spec/fixtures/vcr_cassettes/Bolognese_Metadata/doi_resolver/https_url.yml +0 -44
  212. data/spec/fixtures/vcr_cassettes/Bolognese_Metadata/doi_resolver/test_resolver.yml +0 -44
  213. data/spec/fixtures/vcr_cassettes/Bolognese_Metadata/doi_resolver/test_resolver_http.yml +0 -44
  214. data/spec/fixtures/vcr_cassettes/Bolognese_Metadata/find_from_format_by_ID/crossref.yml +0 -143
  215. data/spec/fixtures/vcr_cassettes/Bolognese_Metadata/find_from_format_by_ID/crossref_doi_not_url.yml +0 -143
  216. data/spec/fixtures/vcr_cassettes/Bolognese_Metadata/find_from_format_by_ID/datacite.yml +0 -143
  217. data/spec/fixtures/vcr_cassettes/Bolognese_Metadata/find_from_format_by_ID/datacite_doi_http.yml +0 -143
  218. data/spec/fixtures/vcr_cassettes/Bolognese_Metadata/find_from_format_by_ID/github.yml +0 -99
  219. data/spec/fixtures/vcr_cassettes/Bolognese_Metadata/find_from_format_by_ID/orcid.yml +0 -99
  220. data/spec/fixtures/vcr_cassettes/Bolognese_Metadata/find_from_format_by_ID/schema_org.yml +0 -99
  221. data/spec/fixtures/vcr_cassettes/Bolognese_Metadata/find_from_format_by_ID/unknown_DOI_registration_agency.yml +0 -143
  222. data/spec/fixtures/vcr_cassettes/Bolognese_Metadata/find_from_format_from_file/bibtex.yml +0 -99
  223. data/spec/fixtures/vcr_cassettes/Bolognese_Metadata/find_from_format_from_file/citeproc.yml +0 -99
  224. data/spec/fixtures/vcr_cassettes/Bolognese_Metadata/find_from_format_from_file/codemeta.yml +0 -99
  225. data/spec/fixtures/vcr_cassettes/Bolognese_Metadata/find_from_format_from_file/crosscite.yml +0 -99
  226. data/spec/fixtures/vcr_cassettes/Bolognese_Metadata/find_from_format_from_file/crossref.yml +0 -99
  227. data/spec/fixtures/vcr_cassettes/Bolognese_Metadata/find_from_format_from_file/datacite.yml +0 -99
  228. data/spec/fixtures/vcr_cassettes/Bolognese_Metadata/find_from_format_from_file/datacite_json.yml +0 -99
  229. data/spec/fixtures/vcr_cassettes/Bolognese_Metadata/find_from_format_from_file/ris.yml +0 -99
  230. data/spec/fixtures/vcr_cassettes/Bolognese_Metadata/find_from_format_from_file/schema_org.yml +0 -99
  231. data/spec/fixtures/vcr_cassettes/Bolognese_Metadata/find_from_format_from_string/crosscite.yml +0 -99
  232. data/spec/fixtures/vcr_cassettes/Bolognese_Metadata/from_schema_org/with_id.yml +0 -44
  233. data/spec/fixtures/vcr_cassettes/Bolognese_Metadata/get_codemeta_metadata/maremma.yml +0 -73
  234. data/spec/fixtures/vcr_cassettes/Bolognese_Metadata/get_codemeta_metadata/metadata_reports.yml +0 -94
  235. data/spec/fixtures/vcr_cassettes/Bolognese_Metadata/get_crossref_metadata/DOI_with_ORCID_ID.yml +0 -92
  236. data/spec/fixtures/vcr_cassettes/Bolognese_Metadata/get_crossref_metadata/DOI_with_SICI_DOI.yml +0 -91
  237. data/spec/fixtures/vcr_cassettes/Bolognese_Metadata/get_crossref_metadata/DOI_with_data_citation.yml +0 -95
  238. data/spec/fixtures/vcr_cassettes/Bolognese_Metadata/get_crossref_metadata/JaLC.yml +0 -126
  239. data/spec/fixtures/vcr_cassettes/Bolognese_Metadata/get_crossref_metadata/KISTI.yml +0 -147
  240. data/spec/fixtures/vcr_cassettes/Bolognese_Metadata/get_crossref_metadata/OP.yml +0 -89
  241. data/spec/fixtures/vcr_cassettes/Bolognese_Metadata/get_crossref_metadata/another_book.yml +0 -127
  242. data/spec/fixtures/vcr_cassettes/Bolognese_Metadata/get_crossref_metadata/another_book_chapter.yml +0 -89
  243. data/spec/fixtures/vcr_cassettes/Bolognese_Metadata/get_crossref_metadata/book.yml +0 -88
  244. data/spec/fixtures/vcr_cassettes/Bolognese_Metadata/get_crossref_metadata/book_chapter.yml +0 -159
  245. data/spec/fixtures/vcr_cassettes/Bolognese_Metadata/get_crossref_metadata/component.yml +0 -109
  246. data/spec/fixtures/vcr_cassettes/Bolognese_Metadata/get_crossref_metadata/dataset.yml +0 -119
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  435. data/spec/fixtures/vcr_cassettes/Bolognese_Metadata/write_metadata_as_citeproc/container_title.yml +0 -49
  436. data/spec/fixtures/vcr_cassettes/Bolognese_Metadata/write_metadata_as_citeproc/journal_article.yml +0 -51
  437. data/spec/fixtures/vcr_cassettes/Bolognese_Metadata/write_metadata_as_citeproc/keywords_subject_scheme.yml +0 -119
  438. data/spec/fixtures/vcr_cassettes/Bolognese_Metadata/write_metadata_as_citeproc/maremma.yml +0 -73
  439. data/spec/fixtures/vcr_cassettes/Bolognese_Metadata/write_metadata_as_citeproc/missing_creator.yml +0 -45
  440. data/spec/fixtures/vcr_cassettes/Bolognese_Metadata/write_metadata_as_citeproc/multiple_abstracts.yml +0 -49
  441. data/spec/fixtures/vcr_cassettes/Bolognese_Metadata/write_metadata_as_citeproc/software.yml +0 -49
  442. data/spec/fixtures/vcr_cassettes/Bolognese_Metadata/write_metadata_as_citeproc/with_first_page.yml +0 -46
  443. data/spec/fixtures/vcr_cassettes/Bolognese_Metadata/write_metadata_as_citeproc/with_only_first_page.yml +0 -46
  444. data/spec/fixtures/vcr_cassettes/Bolognese_Metadata/write_metadata_as_citeproc/with_pages.yml +0 -48
  445. data/spec/fixtures/vcr_cassettes/Bolognese_Metadata/write_metadata_as_codemeta/SoftwareSourceCode_DataCite.yml +0 -54
  446. data/spec/fixtures/vcr_cassettes/Bolognese_Metadata/write_metadata_as_codemeta/SoftwareSourceCode_DataCite_check_codemeta_v2.yml +0 -54
  447. data/spec/fixtures/vcr_cassettes/Bolognese_Metadata/write_metadata_as_crosscite/datacite_database_attributes.yml +0 -49
  448. data/spec/fixtures/vcr_cassettes/Bolognese_Metadata/write_metadata_as_crosscite/maremma.yml +0 -73
  449. data/spec/fixtures/vcr_cassettes/Bolognese_Metadata/write_metadata_as_crosscite/with_ORCID_ID.yml +0 -48
  450. data/spec/fixtures/vcr_cassettes/Bolognese_Metadata/write_metadata_as_crosscite/with_data_citation.yml +0 -51
  451. data/spec/fixtures/vcr_cassettes/Bolognese_Metadata/write_metadata_as_crosscite/with_data_citation_schema_org.yml +0 -111
  452. data/spec/fixtures/vcr_cassettes/Bolognese_Metadata/write_metadata_as_crossref/from_DataCite.yml +0 -49
  453. data/spec/fixtures/vcr_cassettes/Bolognese_Metadata/write_metadata_as_csv/climate_data.yml +0 -52
  454. data/spec/fixtures/vcr_cassettes/Bolognese_Metadata/write_metadata_as_csv/maremma.yml +0 -73
  455. data/spec/fixtures/vcr_cassettes/Bolognese_Metadata/write_metadata_as_csv/text.yml +0 -49
  456. data/spec/fixtures/vcr_cassettes/Bolognese_Metadata/write_metadata_as_csv/with_data_citation.yml +0 -51
  457. data/spec/fixtures/vcr_cassettes/Bolognese_Metadata/write_metadata_as_csv/with_pages.yml +0 -48
  458. data/spec/fixtures/vcr_cassettes/Bolognese_Metadata/write_metadata_as_datacite_json/maremma.yml +0 -73
  459. data/spec/fixtures/vcr_cassettes/Bolognese_Metadata/write_metadata_as_datacite_json/with_ORCID_ID.yml +0 -48
  460. data/spec/fixtures/vcr_cassettes/Bolognese_Metadata/write_metadata_as_datacite_json/with_data_citation.yml +0 -51
  461. data/spec/fixtures/vcr_cassettes/Bolognese_Metadata/write_metadata_as_datacite_json/with_data_citation_schema_org.yml +0 -111
  462. data/spec/fixtures/vcr_cassettes/Bolognese_Metadata/write_metadata_as_datacite_xml/DOI_not_found.yml +0 -45
  463. data/spec/fixtures/vcr_cassettes/Bolognese_Metadata/write_metadata_as_datacite_xml/Dataset_in_schema_4_0.yml +0 -49
  464. data/spec/fixtures/vcr_cassettes/Bolognese_Metadata/write_metadata_as_datacite_xml/Text_pass-thru.yml +0 -81
  465. data/spec/fixtures/vcr_cassettes/Bolognese_Metadata/write_metadata_as_datacite_xml/Text_pass-thru_with_doi_in_options.yml +0 -81
  466. data/spec/fixtures/vcr_cassettes/Bolognese_Metadata/write_metadata_as_datacite_xml/maremma.yml +0 -73
  467. data/spec/fixtures/vcr_cassettes/Bolognese_Metadata/write_metadata_as_datacite_xml/with_ORCID_ID.yml +0 -48
  468. data/spec/fixtures/vcr_cassettes/Bolognese_Metadata/write_metadata_as_datacite_xml/with_data_citation.yml +0 -51
  469. data/spec/fixtures/vcr_cassettes/Bolognese_Metadata/write_metadata_as_datacite_xml/with_data_citation_schema_org.yml +0 -111
  470. data/spec/fixtures/vcr_cassettes/Bolognese_Metadata/write_metadata_as_datacite_xml/with_editor.yml +0 -45
  471. data/spec/fixtures/vcr_cassettes/Bolognese_Metadata/write_metadata_as_jats_xml/Dataset_in_schema_4_0.yml +0 -49
  472. data/spec/fixtures/vcr_cassettes/Bolognese_Metadata/write_metadata_as_jats_xml/Text_pass-thru.yml +0 -81
  473. data/spec/fixtures/vcr_cassettes/Bolognese_Metadata/write_metadata_as_jats_xml/book_chapter.yml +0 -84
  474. data/spec/fixtures/vcr_cassettes/Bolognese_Metadata/write_metadata_as_jats_xml/maremma.yml +0 -73
  475. data/spec/fixtures/vcr_cassettes/Bolognese_Metadata/write_metadata_as_jats_xml/with_ORCID_ID.yml +0 -48
  476. data/spec/fixtures/vcr_cassettes/Bolognese_Metadata/write_metadata_as_jats_xml/with_data_citation.yml +0 -51
  477. data/spec/fixtures/vcr_cassettes/Bolognese_Metadata/write_metadata_as_jats_xml/with_data_citation_schema_org.yml +0 -111
  478. data/spec/fixtures/vcr_cassettes/Bolognese_Metadata/write_metadata_as_jats_xml/with_editor.yml +0 -45
  479. data/spec/fixtures/vcr_cassettes/Bolognese_Metadata/write_metadata_as_ris/BlogPosting.yml +0 -55
  480. data/spec/fixtures/vcr_cassettes/Bolognese_Metadata/write_metadata_as_ris/BlogPosting_schema_org.yml +0 -111
  481. data/spec/fixtures/vcr_cassettes/Bolognese_Metadata/write_metadata_as_ris/Dataset.yml +0 -49
  482. data/spec/fixtures/vcr_cassettes/Bolognese_Metadata/write_metadata_as_ris/alternate_name.yml +0 -49
  483. data/spec/fixtures/vcr_cassettes/Bolognese_Metadata/write_metadata_as_ris/journal_article.yml +0 -51
  484. data/spec/fixtures/vcr_cassettes/Bolognese_Metadata/write_metadata_as_ris/keywords_with_subject_scheme.yml +0 -119
  485. data/spec/fixtures/vcr_cassettes/Bolognese_Metadata/write_metadata_as_ris/maremma.yml +0 -73
  486. data/spec/fixtures/vcr_cassettes/Bolognese_Metadata/write_metadata_as_ris/with_pages.yml +0 -48
  487. data/spec/fixtures/vcr_cassettes/Bolognese_Metadata/write_metadata_as_schema_org/Funding.yml +0 -49
  488. data/spec/fixtures/vcr_cassettes/Bolognese_Metadata/write_metadata_as_schema_org/Funding_OpenAIRE.yml +0 -75
  489. data/spec/fixtures/vcr_cassettes/Bolognese_Metadata/write_metadata_as_schema_org/Schema_org_JSON.yml +0 -75
  490. data/spec/fixtures/vcr_cassettes/Bolognese_Metadata/write_metadata_as_schema_org/Schema_org_JSON_IsSupplementTo.yml +0 -49
  491. data/spec/fixtures/vcr_cassettes/Bolognese_Metadata/write_metadata_as_schema_org/Schema_org_JSON_isReferencedBy.yml +0 -49
  492. data/spec/fixtures/vcr_cassettes/Bolognese_Metadata/write_metadata_as_schema_org/alternate_identifiers.yml +0 -57
  493. data/spec/fixtures/vcr_cassettes/Bolognese_Metadata/write_metadata_as_schema_org/data_catalog.yml +0 -62
  494. data/spec/fixtures/vcr_cassettes/Bolognese_Metadata/write_metadata_as_schema_org/geo_location_box.yml +0 -98
  495. data/spec/fixtures/vcr_cassettes/Bolognese_Metadata/write_metadata_as_schema_org/journal_article.yml +0 -51
  496. data/spec/fixtures/vcr_cassettes/Bolognese_Metadata/write_metadata_as_schema_org/maremma_schema_org_JSON.yml +0 -73
  497. data/spec/fixtures/vcr_cassettes/Bolognese_Metadata/write_metadata_as_schema_org/series_information.yml +0 -49
  498. data/spec/fixtures/vcr_cassettes/Bolognese_Metadata/write_metadata_as_schema_org/subject_scheme.yml +0 -49
  499. data/spec/fixtures/vcr_cassettes/Bolognese_Metadata/write_metadata_as_schema_org/subject_scheme_multiple_keywords.yml +0 -119
  500. data/spec/fixtures/vcr_cassettes/Bolognese_Metadata/write_metadata_as_turtle/Dataset.yml +0 -49
  501. data/spec/fixtures/vivli.xml +0 -1
  502. data/spec/metadata_spec.rb +0 -165
  503. data/spec/readers/bibtex_reader_spec.rb +0 -59
  504. data/spec/readers/citeproc_reader_spec.rb +0 -61
  505. data/spec/readers/codemeta_reader_spec.rb +0 -117
  506. data/spec/readers/crosscite_reader_spec.rb +0 -41
  507. data/spec/readers/crossref_reader_spec.rb +0 -509
  508. data/spec/readers/datacite_json_reader_spec.rb +0 -61
  509. data/spec/readers/datacite_reader_spec.rb +0 -1041
  510. data/spec/readers/ris_reader_spec.rb +0 -73
  511. data/spec/readers/schema_org_reader_spec.rb +0 -325
  512. data/spec/spec_helper.rb +0 -94
  513. data/spec/utils_spec.rb +0 -417
  514. data/spec/writers/bibtex_writer_spec.rb +0 -163
  515. data/spec/writers/citation_writer_spec.rb +0 -35
  516. data/spec/writers/citeproc_writer_spec.rb +0 -223
  517. data/spec/writers/codemeta_writer_spec.rb +0 -46
  518. data/spec/writers/crosscite_writer_spec.rb +0 -118
  519. data/spec/writers/crossref_writer_spec.rb +0 -21
  520. data/spec/writers/csv_writer_spec.rb +0 -93
  521. data/spec/writers/datacite_json_writer_spec.rb +0 -86
  522. data/spec/writers/datacite_writer_spec.rb +0 -366
  523. data/spec/writers/jats_writer_spec.rb +0 -179
  524. data/spec/writers/rdf_xml_writer_spec.rb +0 -100
  525. data/spec/writers/ris_writer_spec.rb +0 -203
  526. data/spec/writers/schema_org_writer_spec.rb +0 -322
  527. data/spec/writers/turtle_writer_spec.rb +0 -84
data/spec/fixtures/datacite-geolocation-empty.xml DELETED
@@ -1,159 +0,0 @@
1
- <?xml version="1.0" encoding="utf-8"?>
2
- <resource xmlns="http://datacite.org/schema/kernel-4" xmlns:xsi="http://www.w3.org/2001/XMLSchema-instance" xsi:schemaLocation="http://datacite.org/schema/kernel-4 http://schema.datacite.org/meta/kernel-4/metadata.xsd">
3
- <identifier identifierType="DOI">10.1594/IEDA/111185</identifier>
4
- <creators>
5
- <creator>
6
- <creatorName>Carlos P Carvajal</creatorName>
7
- <givenName>Carlos</givenName>
8
- <familyName>Carvajal</familyName>
9
- </creator>
10
- <creator>
11
- <creatorName>Gerilyn S Soreghan</creatorName>
12
- <givenName>Gerilyn</givenName>
13
- <familyName>Soreghan</familyName>
14
- </creator>
15
- <creator>
16
- <creatorName>Peter E Isaacson</creatorName>
17
- <givenName>Peter</givenName>
18
- <familyName>Isaacson</familyName>
19
- </creator>
20
- </creators>
21
- <titles>
22
- <title>Geochemical and grain-size analyses of atmospheric dusts from Pennsylvanian carbonates of the Copacabana Formation (Madre de Dios Basin, Bolivia)</title>
23
- </titles>
24
- <publisher>EarthChem</publisher>
25
- <publicationYear>2018</publicationYear>
26
- <subjects>
27
- <subject subjectScheme="coverage scope">Global</subject>
28
- </subjects>
29
- <dates>
30
- <date dateType="Available">2018-06-21</date>
31
- <date dateType="Created">2018-06-20</date>
32
- </dates>
33
- <language>en</language>
34
- <resourceType resourceTypeGeneral="Dataset">Dataset</resourceType>
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- <alternateIdentifiers>
36
- <alternateIdentifier alternateIdentifierType="URL">http://www.earthchem.org/library/browse/view?id=1185</alternateIdentifier>
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- </alternateIdentifiers>
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- <relatedIdentifiers>
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- <relatedIdentifier relatedIdentifierType="IGSN" relationType="References">IEBMM0020</relatedIdentifier>
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- <relatedIdentifier relatedIdentifierType="IGSN" relationType="References">IEBMM0023</relatedIdentifier>
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- <relatedIdentifier relatedIdentifierType="IGSN" relationType="References">IEBMM0024</relatedIdentifier>
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- <relatedIdentifier relatedIdentifierType="IGSN" relationType="References">IEBMM0025</relatedIdentifier>
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- <relatedIdentifier relatedIdentifierType="IGSN" relationType="References">IEBMM0026</relatedIdentifier>
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- <relatedIdentifier relatedIdentifierType="IGSN" relationType="References">IEBMM0027</relatedIdentifier>
119
- <relatedIdentifier relatedIdentifierType="IGSN" relationType="References">IEBMM0028</relatedIdentifier>
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- <relatedIdentifier relatedIdentifierType="IGSN" relationType="References">IEBMM002D</relatedIdentifier>
125
- <relatedIdentifier relatedIdentifierType="IGSN" relationType="References">IEBMM002E</relatedIdentifier>
126
- <relatedIdentifier relatedIdentifierType="IGSN" relationType="References">IEBMM002F</relatedIdentifier>
127
- <relatedIdentifier relatedIdentifierType="IGSN" relationType="References">IEBMM002G</relatedIdentifier>
128
- <relatedIdentifier relatedIdentifierType="IGSN" relationType="References">IEBMM002H</relatedIdentifier>
129
- <relatedIdentifier relatedIdentifierType="IGSN" relationType="References">IEBMM002I</relatedIdentifier>
130
- <relatedIdentifier relatedIdentifierType="IGSN" relationType="References">IEBMM002J</relatedIdentifier>
131
- <relatedIdentifier relatedIdentifierType="IGSN" relationType="References">IEBMM002K</relatedIdentifier>
132
- </relatedIdentifiers>
133
- <formats>
134
- <format>application/vnd.ms-excel</format>
135
- </formats>
136
- <version>1.0</version>
137
- <rightsList>
138
- <rights rightsURI="https://creativecommons.org/licenses/by-nc-sa/3.0/us/">Creative Commons Attribution-NonCommercial-Share Alike 3.0 United States [CC BY-NC-SA 3.0]</rights>
139
- </rightsList>
140
- <descriptions>
141
- <description descriptionType="Abstract">This dataset documents the geochemical and grain-size characteristics of atmospheric dust from Pennsylvanian carbonates of the Copacabana Formation, recovered in core (Mobil-Oxy Manuripi X-1) from the Madre de Dios basin (Bolivia), within southern mid-latitudes (~35˚S) of western Gondwana. Provenance indicates two discrete sources of atmospheric input–a western volcanic arc source and eastern continental source, recording both westerly (zonal) and easterly (katabatic) wind directions.</description>
142
- <description descriptionType="Other">Carvajal, C.P., Soreghan, G. S, Isaacson, P. E., Hinnov, L.A., Hamilton, M. A., Heavens, N.G., (2018) Climatic and volcanic events recorded in atmospheric dust from the Late Pennsylvanian Copacabana Formation (Bolivia) of Western Gondwana. Gondwana Research, v 58, p 105-121.</description>
143
- </descriptions>
144
- <fundingReferences>
145
- <fundingReference>
146
- <awardNumber awardURI="http://www.nsf.gov/awardsearch/showAward.do?AwardNumber=1338331">1338331</awardNumber>
147
- <funderName>National Science Foundation</funderName>
148
- </fundingReference>
149
- </fundingReferences>
150
- <geoLocations>
151
- <geoLocation/>
152
- <geoLocation>
153
- <geoLocationPoint>
154
- <pointLongitude>-68.2975</pointLongitude>
155
- <pointLatitude>-11.64583333</pointLatitude>
156
- </geoLocationPoint>
157
- </geoLocation>
158
- </geoLocations>
159
- </resource>
data/spec/fixtures/datacite-metadata-sample-complicated-v2.2.xml DELETED
@@ -1,52 +0,0 @@
1
- <?xml version="1.0" encoding="UTF-8"?>
2
- <resource xmlns="http://datacite.org/schema/kernel-2.2" xmlns:xsi="http://www.w3.org/2001/XMLSchema-instance" xsi:schemaLocation="http://datacite.org/schema/kernel-2.2 http://schema.datacite.org/meta/kernel-2.2/metadata.xsd">
3
- <identifier identifierType="DOI">10.5072/testpub</identifier>
4
- <creators>
5
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