bolognese 0.9.56 → 0.9.58

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Files changed (318) hide show
  1. checksums.yaml +4 -4
  2. data/.travis.yml +1 -1
  3. data/Gemfile.lock +6 -4
  4. data/README.md +7 -0
  5. data/bolognese.gemspec +1 -0
  6. data/lib/bolognese.rb +1 -0
  7. data/lib/bolognese/metadata.rb +12 -4
  8. data/lib/bolognese/readers/bibtex_reader.rb +4 -1
  9. data/lib/bolognese/readers/crossref_reader.rb +60 -34
  10. data/lib/bolognese/readers/datacite_reader.rb +4 -11
  11. data/lib/bolognese/readers/ris_reader.rb +2 -1
  12. data/lib/bolognese/utils.rb +111 -51
  13. data/lib/bolognese/version.rb +1 -1
  14. data/lib/bolognese/writers/bibtex_writer.rb +1 -1
  15. data/lib/bolognese/writers/citeproc_writer.rb +1 -1
  16. data/lib/bolognese/writers/crosscite_writer.rb +2 -1
  17. data/lib/bolognese/writers/jats_writer.rb +94 -0
  18. data/lib/bolognese/writers/ris_writer.rb +2 -1
  19. data/lib/bolognese/writers/schema_org_writer.rb +2 -1
  20. data/resources/kernel-4/include/datacite-dateType-v4.1.xsd +1 -1
  21. data/resources/kernel-4/include/datacite-relationType-v4.1.xsd +1 -1
  22. data/resources/kernel-4/include/datacite-resourceType-v4.1.xsd +1 -1
  23. data/resources/kernel-4/metadata.xsd +1 -1
  24. data/spec/author_utils_spec.rb +1 -1
  25. data/spec/fixtures/vcr_cassettes/Bolognese_CLI/convert_file/crossref/default.yml +9 -3
  26. data/spec/fixtures/vcr_cassettes/Bolognese_CLI/convert_file/crossref/to_bibtex.yml +9 -3
  27. data/spec/fixtures/vcr_cassettes/Bolognese_CLI/convert_file/crossref/to_crossref.yml +9 -3
  28. data/spec/fixtures/vcr_cassettes/Bolognese_CLI/convert_file/crossref/to_datacite.yml +9 -3
  29. data/spec/fixtures/vcr_cassettes/Bolognese_CLI/convert_file/crossref/to_schema_org.yml +9 -3
  30. data/spec/fixtures/vcr_cassettes/Bolognese_CLI/convert_from_id/crossref/default.yml +27 -13
  31. data/spec/fixtures/vcr_cassettes/Bolognese_CLI/convert_from_id/crossref/to_bibtex.yml +25 -13
  32. data/spec/fixtures/vcr_cassettes/Bolognese_CLI/convert_from_id/crossref/to_citation.yml +17 -17
  33. data/spec/fixtures/vcr_cassettes/Bolognese_CLI/convert_from_id/crossref/to_crossref.yml +27 -13
  34. data/spec/fixtures/vcr_cassettes/Bolognese_CLI/convert_from_id/crossref/to_datacite.yml +26 -12
  35. data/spec/fixtures/vcr_cassettes/Bolognese_CLI/convert_from_id/crossref/to_schema_org.yml +27 -13
  36. data/spec/fixtures/vcr_cassettes/Bolognese_CLI/convert_from_id/datacite/default.yml +15 -52
  37. data/spec/fixtures/vcr_cassettes/Bolognese_CLI/convert_from_id/datacite/to_bibtex.yml +16 -51
  38. data/spec/fixtures/vcr_cassettes/Bolognese_CLI/convert_from_id/datacite/to_citation.yml +20 -51
  39. data/spec/fixtures/vcr_cassettes/Bolognese_CLI/convert_from_id/datacite/to_datacite.yml +16 -49
  40. data/spec/fixtures/vcr_cassettes/Bolognese_CLI/convert_from_id/datacite/to_datacite_json.yml +15 -50
  41. data/spec/fixtures/vcr_cassettes/Bolognese_CLI/convert_from_id/datacite/to_schema_org.yml +16 -51
  42. data/spec/fixtures/vcr_cassettes/Bolognese_CLI/convert_from_id/schema_org/default.yml +15 -15
  43. data/spec/fixtures/vcr_cassettes/Bolognese_CLI/convert_from_id/schema_org/to_bibtex.yml +15 -15
  44. data/spec/fixtures/vcr_cassettes/Bolognese_CLI/convert_from_id/schema_org/to_datacite.yml +14 -14
  45. data/spec/fixtures/vcr_cassettes/Bolognese_CLI/convert_from_id/schema_org/to_schema_org.yml +16 -16
  46. data/spec/fixtures/vcr_cassettes/Bolognese_Metadata/authors_as_string/author.yml +19 -7
  47. data/spec/fixtures/vcr_cassettes/Bolognese_Metadata/authors_as_string/no_author.yml +19 -7
  48. data/spec/fixtures/vcr_cassettes/Bolognese_Metadata/authors_as_string/single_author.yml +19 -7
  49. data/spec/fixtures/vcr_cassettes/Bolognese_Metadata/authors_as_string/with_organization.yml +18 -6
  50. data/spec/fixtures/vcr_cassettes/Bolognese_Metadata/change_datacite_metadata/change_doi.yml +26 -63
  51. data/spec/fixtures/vcr_cassettes/Bolognese_Metadata/change_datacite_metadata/change_title.yml +23 -64
  52. data/spec/fixtures/vcr_cassettes/Bolognese_Metadata/change_metadata_as_datacite_xml/validates_against_schema.yml +19 -7
  53. data/spec/fixtures/vcr_cassettes/Bolognese_Metadata/change_metadata_as_datacite_xml/with_data_citation.yml +19 -7
  54. data/spec/fixtures/vcr_cassettes/Bolognese_Metadata/doi_from_url/doi.yml +19 -7
  55. data/spec/fixtures/vcr_cassettes/Bolognese_Metadata/doi_from_url/not_a_doi.yml +19 -7
  56. data/spec/fixtures/vcr_cassettes/Bolognese_Metadata/doi_from_url/sandbox_url.yml +18 -6
  57. data/spec/fixtures/vcr_cassettes/Bolognese_Metadata/doi_from_url/url.yml +18 -6
  58. data/spec/fixtures/vcr_cassettes/Bolognese_Metadata/doi_registration_agency/crossref.yml +35 -31
  59. data/spec/fixtures/vcr_cassettes/Bolognese_Metadata/doi_registration_agency/datacite.yml +36 -30
  60. data/spec/fixtures/vcr_cassettes/Bolognese_Metadata/doi_registration_agency/medra.yml +35 -31
  61. data/spec/fixtures/vcr_cassettes/Bolognese_Metadata/doi_registration_agency/not_a_valid_prefix.yml +18 -6
  62. data/spec/fixtures/vcr_cassettes/Bolognese_Metadata/doi_registration_agency/not_found.yml +27 -27
  63. data/spec/fixtures/vcr_cassettes/Bolognese_Metadata/doi_resolver/doi.yml +19 -7
  64. data/spec/fixtures/vcr_cassettes/Bolognese_Metadata/doi_resolver/doi_with_protocol.yml +19 -7
  65. data/spec/fixtures/vcr_cassettes/Bolognese_Metadata/doi_resolver/dx_doi_org_url.yml +19 -7
  66. data/spec/fixtures/vcr_cassettes/Bolognese_Metadata/doi_resolver/force_test_resolver.yml +19 -7
  67. data/spec/fixtures/vcr_cassettes/Bolognese_Metadata/doi_resolver/https_url.yml +19 -7
  68. data/spec/fixtures/vcr_cassettes/Bolognese_Metadata/doi_resolver/test_resolver.yml +19 -7
  69. data/spec/fixtures/vcr_cassettes/Bolognese_Metadata/doi_resolver/test_resolver_http.yml +18 -6
  70. data/spec/fixtures/vcr_cassettes/Bolognese_Metadata/doi_search/doi.yml +19 -7
  71. data/spec/fixtures/vcr_cassettes/Bolognese_Metadata/doi_search/doi_with_protocol.yml +19 -7
  72. data/spec/fixtures/vcr_cassettes/Bolognese_Metadata/doi_search/dx_doi_org_url.yml +19 -7
  73. data/spec/fixtures/vcr_cassettes/Bolognese_Metadata/doi_search/force_test_resolver.yml +19 -7
  74. data/spec/fixtures/vcr_cassettes/Bolognese_Metadata/doi_search/https_url.yml +19 -7
  75. data/spec/fixtures/vcr_cassettes/Bolognese_Metadata/doi_search/test_resolver.yml +19 -7
  76. data/spec/fixtures/vcr_cassettes/Bolognese_Metadata/doi_search/test_resolver_http.yml +19 -7
  77. data/spec/fixtures/vcr_cassettes/Bolognese_Metadata/find_from_format_by_ID/crossref.yml +39 -86
  78. data/spec/fixtures/vcr_cassettes/Bolognese_Metadata/find_from_format_by_ID/crossref_doi_not_url.yml +36 -89
  79. data/spec/fixtures/vcr_cassettes/Bolognese_Metadata/find_from_format_by_ID/datacite.yml +40 -85
  80. data/spec/fixtures/vcr_cassettes/Bolognese_Metadata/find_from_format_by_ID/datacite_doi_http.yml +36 -89
  81. data/spec/fixtures/vcr_cassettes/Bolognese_Metadata/find_from_format_by_ID/github.yml +19 -62
  82. data/spec/fixtures/vcr_cassettes/Bolognese_Metadata/find_from_format_by_ID/orcid.yml +21 -62
  83. data/spec/fixtures/vcr_cassettes/Bolognese_Metadata/find_from_format_by_ID/schema_org.yml +22 -63
  84. data/spec/fixtures/vcr_cassettes/Bolognese_Metadata/find_from_format_by_ID/unknown_DOI_registration_agency.yml +31 -82
  85. data/spec/fixtures/vcr_cassettes/Bolognese_Metadata/find_from_format_from_file/bibtex.yml +20 -63
  86. data/spec/fixtures/vcr_cassettes/Bolognese_Metadata/find_from_format_from_file/citeproc.yml +21 -62
  87. data/spec/fixtures/vcr_cassettes/Bolognese_Metadata/find_from_format_from_file/codemeta.yml +23 -62
  88. data/spec/fixtures/vcr_cassettes/Bolognese_Metadata/find_from_format_from_file/crosscite.yml +22 -63
  89. data/spec/fixtures/vcr_cassettes/Bolognese_Metadata/find_from_format_from_file/crossref.yml +22 -63
  90. data/spec/fixtures/vcr_cassettes/Bolognese_Metadata/find_from_format_from_file/datacite.yml +22 -63
  91. data/spec/fixtures/vcr_cassettes/Bolognese_Metadata/find_from_format_from_file/datacite_json.yml +21 -62
  92. data/spec/fixtures/vcr_cassettes/Bolognese_Metadata/find_from_format_from_file/ris.yml +24 -63
  93. data/spec/fixtures/vcr_cassettes/Bolognese_Metadata/find_from_format_from_file/schema_org.yml +23 -62
  94. data/spec/fixtures/vcr_cassettes/Bolognese_Metadata/find_from_format_from_string/crosscite.yml +20 -63
  95. data/spec/fixtures/vcr_cassettes/Bolognese_Metadata/from_schema_org/with_id.yml +18 -6
  96. data/spec/fixtures/vcr_cassettes/Bolognese_Metadata/get_codemeta_metadata/maremma.yml +10 -10
  97. data/spec/fixtures/vcr_cassettes/Bolognese_Metadata/get_codemeta_metadata/no_codemeta_json.yml +8 -8
  98. data/spec/fixtures/vcr_cassettes/Bolognese_Metadata/get_codemeta_metadata/not_found_error.yml +8 -8
  99. data/spec/fixtures/vcr_cassettes/Bolognese_Metadata/get_crossref_metadata/DOI_with_ORCID_ID.yml +34 -30
  100. data/spec/fixtures/vcr_cassettes/Bolognese_Metadata/get_crossref_metadata/DOI_with_SICI_DOI.yml +33 -29
  101. data/spec/fixtures/vcr_cassettes/Bolognese_Metadata/get_crossref_metadata/DOI_with_data_citation.yml +35 -31
  102. data/spec/fixtures/vcr_cassettes/Bolognese_Metadata/get_crossref_metadata/book_chapter.yml +150 -0
  103. data/spec/fixtures/vcr_cassettes/Bolognese_Metadata/get_crossref_metadata/dataset.yml +34 -30
  104. data/spec/fixtures/vcr_cassettes/Bolognese_Metadata/get_crossref_metadata/date_in_future.yml +33 -31
  105. data/spec/fixtures/vcr_cassettes/Bolognese_Metadata/get_crossref_metadata/journal_article.yml +33 -31
  106. data/spec/fixtures/vcr_cassettes/Bolognese_Metadata/get_crossref_metadata/not_found_error.yml +26 -26
  107. data/spec/fixtures/vcr_cassettes/Bolognese_Metadata/get_crossref_metadata/posted_content.yml +34 -30
  108. data/spec/fixtures/vcr_cassettes/Bolognese_Metadata/get_crossref_raw/journal_article.yml +9 -3
  109. data/spec/fixtures/vcr_cassettes/Bolognese_Metadata/get_datacite_metadata/BlogPosting.yml +23 -64
  110. data/spec/fixtures/vcr_cassettes/Bolognese_Metadata/get_datacite_metadata/BlogPosting_in_test_system.yml +22 -65
  111. data/spec/fixtures/vcr_cassettes/Bolognese_Metadata/get_datacite_metadata/DOI_in_test_system.yml +24 -64
  112. data/spec/fixtures/vcr_cassettes/Bolognese_Metadata/get_datacite_metadata/DOI_not_found.yml +24 -29
  113. data/spec/fixtures/vcr_cassettes/Bolognese_Metadata/get_datacite_metadata/Dataset.yml +24 -65
  114. data/spec/fixtures/vcr_cassettes/Bolognese_Metadata/get_datacite_metadata/Funding.yml +22 -65
  115. data/spec/fixtures/vcr_cassettes/Bolognese_Metadata/get_datacite_metadata/Funding_schema_version_4.yml +20 -65
  116. data/spec/fixtures/vcr_cassettes/Bolognese_Metadata/get_datacite_metadata/author_only_full_name.yml +23 -63
  117. data/spec/fixtures/vcr_cassettes/Bolognese_Metadata/get_datacite_metadata/author_with_scheme.yml +26 -64
  118. data/spec/fixtures/vcr_cassettes/Bolognese_Metadata/get_datacite_metadata/author_with_wrong_orcid_scheme.yml +24 -66
  119. data/spec/fixtures/vcr_cassettes/Bolognese_Metadata/get_datacite_metadata/date.yml +24 -64
  120. data/spec/fixtures/vcr_cassettes/Bolognese_Metadata/get_datacite_metadata/empty_subject.yml +24 -65
  121. data/spec/fixtures/vcr_cassettes/Bolognese_Metadata/get_datacite_metadata/funding_schema_version_3.yml +24 -66
  122. data/spec/fixtures/vcr_cassettes/Bolognese_Metadata/get_datacite_metadata/is_identical_to.yml +24 -64
  123. data/spec/fixtures/vcr_cassettes/Bolognese_Metadata/get_datacite_metadata/keywords_with_attributes.yml +28 -64
  124. data/spec/fixtures/vcr_cassettes/Bolognese_Metadata/get_datacite_metadata/leading_and_trailing_whitespace.yml +26 -64
  125. data/spec/fixtures/vcr_cassettes/Bolognese_Metadata/get_datacite_metadata/multiple_author_names_in_one_creatorName.yml +23 -64
  126. data/spec/fixtures/vcr_cassettes/Bolognese_Metadata/get_datacite_metadata/multiple_licenses.yml +25 -65
  127. data/spec/fixtures/vcr_cassettes/Bolognese_Metadata/get_date_from_date_parts/date.yml +18 -6
  128. data/spec/fixtures/vcr_cassettes/Bolognese_Metadata/get_date_from_date_parts/year-month.yml +19 -7
  129. data/spec/fixtures/vcr_cassettes/Bolognese_Metadata/get_date_from_date_parts/year.yml +19 -7
  130. data/spec/fixtures/vcr_cassettes/Bolognese_Metadata/get_date_parts/date.yml +19 -7
  131. data/spec/fixtures/vcr_cassettes/Bolognese_Metadata/get_date_parts/year-month.yml +18 -6
  132. data/spec/fixtures/vcr_cassettes/Bolognese_Metadata/get_date_parts/year.yml +19 -7
  133. data/spec/fixtures/vcr_cassettes/Bolognese_Metadata/get_name_identifiers/has_ORCID.yml +11 -79
  134. data/spec/fixtures/vcr_cassettes/Bolognese_Metadata/get_name_identifiers/has_jacow_org_scheme.yml +13 -79
  135. data/spec/fixtures/vcr_cassettes/Bolognese_Metadata/get_name_identifiers/has_multiple_name_identifier.yml +14 -80
  136. data/spec/fixtures/vcr_cassettes/Bolognese_Metadata/get_name_identifiers/has_no_ORCID.yml +13 -79
  137. data/spec/fixtures/vcr_cassettes/Bolognese_Metadata/get_one_author/has_familyName.yml +11 -79
  138. data/spec/fixtures/vcr_cassettes/Bolognese_Metadata/get_one_author/has_multiple_names_in_display-order.yml +7 -44
  139. data/spec/fixtures/vcr_cassettes/Bolognese_Metadata/get_one_author/has_name_in_Thai.yml +12 -80
  140. data/spec/fixtures/vcr_cassettes/Bolognese_Metadata/get_one_author/has_name_in_display-order.yml +12 -78
  141. data/spec/fixtures/vcr_cassettes/Bolognese_Metadata/get_one_author/has_name_in_display-order_with_ORCID.yml +13 -79
  142. data/spec/fixtures/vcr_cassettes/Bolognese_Metadata/get_one_author/has_name_in_sort-order.yml +12 -80
  143. data/spec/fixtures/vcr_cassettes/Bolognese_Metadata/get_one_author/hyper-authorship.yml +9 -79
  144. data/spec/fixtures/vcr_cassettes/Bolognese_Metadata/get_one_author/is_organization.yml +19 -7
  145. data/spec/fixtures/vcr_cassettes/Bolognese_Metadata/get_one_author/multiple_author_names_in_one_field.yml +9 -79
  146. data/spec/fixtures/vcr_cassettes/Bolognese_Metadata/get_one_author/multiple_name_identifier.yml +13 -44
  147. data/spec/fixtures/vcr_cassettes/Bolognese_Metadata/get_one_author/name_with_affiliation.yml +14 -45
  148. data/spec/fixtures/vcr_cassettes/Bolognese_Metadata/get_one_author/name_with_role.yml +14 -45
  149. data/spec/fixtures/vcr_cassettes/Bolognese_Metadata/get_schema_org_metadata/BlogPosting.yml +19 -19
  150. data/spec/fixtures/vcr_cassettes/Bolognese_Metadata/get_schema_org_metadata/BlogPosting_with_new_DOI.yml +20 -20
  151. data/spec/fixtures/vcr_cassettes/Bolognese_Metadata/get_schema_org_metadata/not_found_error.yml +2 -2
  152. data/spec/fixtures/vcr_cassettes/Bolognese_Metadata/handle_input/DOI_RA_not_Crossref_or_DataCite.yml +17 -23
  153. data/spec/fixtures/vcr_cassettes/Bolognese_Metadata/handle_input/unknown_DOI_prefix.yml +8 -22
  154. data/spec/fixtures/vcr_cassettes/Bolognese_Metadata/insert_alternate_identifiers/insert.yml +6 -41
  155. data/spec/fixtures/vcr_cassettes/Bolognese_Metadata/insert_contributors/none.yml +7 -40
  156. data/spec/fixtures/vcr_cassettes/Bolognese_Metadata/insert_creators/insert.yml +7 -40
  157. data/spec/fixtures/vcr_cassettes/Bolognese_Metadata/insert_dates/insert.yml +7 -40
  158. data/spec/fixtures/vcr_cassettes/Bolognese_Metadata/insert_descriptions/insert.yml +7 -40
  159. data/spec/fixtures/vcr_cassettes/Bolognese_Metadata/insert_identifier/doi.yml +6 -41
  160. data/spec/fixtures/vcr_cassettes/Bolognese_Metadata/insert_person/creator_only_name.yml +5 -40
  161. data/spec/fixtures/vcr_cassettes/Bolognese_Metadata/insert_publication_year/insert.yml +7 -40
  162. data/spec/fixtures/vcr_cassettes/Bolognese_Metadata/insert_publisher/insert.yml +6 -41
  163. data/spec/fixtures/vcr_cassettes/Bolognese_Metadata/insert_related_identifiers/insert.yml +5 -40
  164. data/spec/fixtures/vcr_cassettes/Bolognese_Metadata/insert_related_identifiers/related_identifier.yml +7 -40
  165. data/spec/fixtures/vcr_cassettes/Bolognese_Metadata/insert_resource_type/insert.yml +5 -40
  166. data/spec/fixtures/vcr_cassettes/Bolognese_Metadata/insert_rights_list/insert.yml +7 -40
  167. data/spec/fixtures/vcr_cassettes/Bolognese_Metadata/insert_subjects/insert.yml +5 -42
  168. data/spec/fixtures/vcr_cassettes/Bolognese_Metadata/insert_titles/insert.yml +6 -41
  169. data/spec/fixtures/vcr_cassettes/Bolognese_Metadata/insert_version/insert.yml +7 -40
  170. data/spec/fixtures/vcr_cassettes/Bolognese_Metadata/is_personal_name_/has_comma.yml +19 -7
  171. data/spec/fixtures/vcr_cassettes/Bolognese_Metadata/is_personal_name_/has_family_name.yml +19 -7
  172. data/spec/fixtures/vcr_cassettes/Bolognese_Metadata/is_personal_name_/has_id.yml +19 -7
  173. data/spec/fixtures/vcr_cassettes/Bolognese_Metadata/is_personal_name_/has_known_given_name.yml +19 -7
  174. data/spec/fixtures/vcr_cassettes/Bolognese_Metadata/is_personal_name_/has_no_info.yml +19 -7
  175. data/spec/fixtures/vcr_cassettes/Bolognese_Metadata/is_personal_name_/has_type_organization.yml +18 -6
  176. data/spec/fixtures/vcr_cassettes/Bolognese_Metadata/jsonlint/missing_comma.yml +19 -62
  177. data/spec/fixtures/vcr_cassettes/Bolognese_Metadata/jsonlint/nil.yml +22 -63
  178. data/spec/fixtures/vcr_cassettes/Bolognese_Metadata/jsonlint/overlapping_keys.yml +20 -65
  179. data/spec/fixtures/vcr_cassettes/Bolognese_Metadata/jsonlint/valid.yml +22 -63
  180. data/spec/fixtures/vcr_cassettes/Bolognese_Metadata/normalize_doi/SICI_doi.yml +19 -7
  181. data/spec/fixtures/vcr_cassettes/Bolognese_Metadata/normalize_doi/doi.yml +18 -6
  182. data/spec/fixtures/vcr_cassettes/Bolognese_Metadata/normalize_doi/doi_force_datacite_sandbox.yml +19 -7
  183. data/spec/fixtures/vcr_cassettes/Bolognese_Metadata/normalize_doi/doi_from_datacite_sandbox.yml +19 -7
  184. data/spec/fixtures/vcr_cassettes/Bolognese_Metadata/normalize_doi/doi_from_url_without_doi_proxy.yml +18 -6
  185. data/spec/fixtures/vcr_cassettes/Bolognese_Metadata/normalize_doi/doi_prefix_too_long.yml +19 -7
  186. data/spec/fixtures/vcr_cassettes/Bolognese_Metadata/normalize_doi/doi_prefix_with_string.yml +19 -7
  187. data/spec/fixtures/vcr_cassettes/Bolognese_Metadata/normalize_doi/doi_with_protocol.yml +19 -7
  188. data/spec/fixtures/vcr_cassettes/Bolognese_Metadata/normalize_doi/dx_doi_org_url.yml +18 -6
  189. data/spec/fixtures/vcr_cassettes/Bolognese_Metadata/normalize_doi/https_url.yml +19 -7
  190. data/spec/fixtures/vcr_cassettes/Bolognese_Metadata/normalize_doi/not_valid_doi_prefix.yml +19 -7
  191. data/spec/fixtures/vcr_cassettes/Bolognese_Metadata/normalize_doi/url_with_one_slash.yml +19 -7
  192. data/spec/fixtures/vcr_cassettes/Bolognese_Metadata/normalize_id/doi.yml +19 -7
  193. data/spec/fixtures/vcr_cassettes/Bolognese_Metadata/normalize_id/doi_as_url.yml +19 -7
  194. data/spec/fixtures/vcr_cassettes/Bolognese_Metadata/normalize_id/ftp.yml +19 -7
  195. data/spec/fixtures/vcr_cassettes/Bolognese_Metadata/normalize_id/invalid_url.yml +19 -7
  196. data/spec/fixtures/vcr_cassettes/Bolognese_Metadata/normalize_id/sandbox_via_options.yml +19 -7
  197. data/spec/fixtures/vcr_cassettes/Bolognese_Metadata/normalize_id/sandbox_via_url.yml +19 -7
  198. data/spec/fixtures/vcr_cassettes/Bolognese_Metadata/normalize_id/string.yml +18 -6
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  205. data/spec/fixtures/vcr_cassettes/Bolognese_Metadata/parse_attributes/array.yml +19 -7
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  207. data/spec/fixtures/vcr_cassettes/Bolognese_Metadata/parse_attributes/first.yml +19 -7
  208. data/spec/fixtures/vcr_cassettes/Bolognese_Metadata/parse_attributes/hash.yml +19 -7
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  213. data/spec/fixtures/vcr_cassettes/Bolognese_Metadata/to_schema_org/with_id.yml +19 -7
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  232. data/spec/fixtures/vcr_cassettes/Bolognese_Metadata/write_metadata_as_bibtex/BlogPosting.yml +7 -40
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  234. data/spec/fixtures/vcr_cassettes/Bolognese_Metadata/write_metadata_as_bibtex/from_schema_org.yml +20 -20
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  242. data/spec/fixtures/vcr_cassettes/Bolognese_Metadata/write_metadata_as_citeproc/BlogPosting.yml +4 -39
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  245. data/spec/fixtures/vcr_cassettes/Bolognese_Metadata/write_metadata_as_citeproc/container_title.yml +5 -40
  246. data/spec/fixtures/vcr_cassettes/Bolognese_Metadata/write_metadata_as_citeproc/journal_article.yml +19 -7
  247. data/spec/fixtures/vcr_cassettes/Bolognese_Metadata/write_metadata_as_citeproc/maremma.yml +10 -10
  248. data/spec/fixtures/vcr_cassettes/Bolognese_Metadata/write_metadata_as_citeproc/multiple_abstracts.yml +5 -40
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  251. data/spec/fixtures/vcr_cassettes/Bolognese_Metadata/write_metadata_as_codemeta/SoftwareSourceCode_DataCite.yml +5 -40
  252. data/spec/fixtures/vcr_cassettes/Bolognese_Metadata/write_metadata_as_crosscite/datacite_database_attributes.yml +7 -40
  253. data/spec/fixtures/vcr_cassettes/Bolognese_Metadata/write_metadata_as_crosscite/maremma.yml +8 -8
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  257. data/spec/fixtures/vcr_cassettes/Bolognese_Metadata/write_metadata_as_crossref/from_DataCite.yml +7 -40
  258. data/spec/fixtures/vcr_cassettes/Bolognese_Metadata/write_metadata_as_crossref/journal_article.yml +9 -3
  259. data/spec/fixtures/vcr_cassettes/Bolognese_Metadata/write_metadata_as_datacite_json/maremma.yml +9 -9
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  270. data/spec/fixtures/vcr_cassettes/Bolognese_Metadata/write_metadata_as_jats_xml/Dataset_in_schema_4_0.yml +38 -0
  271. data/spec/fixtures/vcr_cassettes/Bolognese_Metadata/write_metadata_as_jats_xml/Text_pass-thru.yml +40 -0
  272. data/spec/fixtures/vcr_cassettes/Bolognese_Metadata/write_metadata_as_jats_xml/book_chapter.yml +60 -0
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  274. data/spec/fixtures/vcr_cassettes/Bolognese_Metadata/write_metadata_as_jats_xml/with_ORCID_ID.yml +79 -0
  275. data/spec/fixtures/vcr_cassettes/Bolognese_Metadata/write_metadata_as_jats_xml/with_data_citation.yml +79 -0
  276. data/spec/fixtures/vcr_cassettes/Bolognese_Metadata/write_metadata_as_jats_xml/with_data_citation_schema_org.yml +121 -0
  277. data/spec/fixtures/vcr_cassettes/Bolognese_Metadata/write_metadata_as_jats_xml/with_editor.yml +79 -0
  278. data/spec/fixtures/vcr_cassettes/Bolognese_Metadata/write_metadata_as_ris/BlogPosting.yml +5 -40
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  281. data/spec/fixtures/vcr_cassettes/Bolognese_Metadata/write_metadata_as_ris/alternate_name.yml +5 -40
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  285. data/spec/fixtures/vcr_cassettes/Bolognese_Metadata/write_metadata_as_schema_org/Funding.yml +5 -40
  286. data/spec/fixtures/vcr_cassettes/Bolognese_Metadata/write_metadata_as_schema_org/Funding_OpenAIRE.yml +7 -40
  287. data/spec/fixtures/vcr_cassettes/Bolognese_Metadata/write_metadata_as_schema_org/Schema_org_JSON.yml +7 -40
  288. data/spec/fixtures/vcr_cassettes/Bolognese_Metadata/write_metadata_as_schema_org/Schema_org_JSON_IsSupplementTo.yml +7 -40
  289. data/spec/fixtures/vcr_cassettes/Bolognese_Metadata/write_metadata_as_schema_org/Schema_org_JSON_isReferencedBy.yml +7 -40
  290. data/spec/fixtures/vcr_cassettes/Bolognese_Metadata/write_metadata_as_schema_org/journal_article.yml +18 -6
  291. data/spec/fixtures/vcr_cassettes/Bolognese_Metadata/write_metadata_as_schema_org/maremma_schema_org_JSON.yml +11 -11
  292. data/spec/fixtures/vcr_cassettes/Bolognese_Metadata/write_metadata_as_turtle/BlogPosting.yml +101 -80
  293. data/spec/fixtures/vcr_cassettes/Bolognese_Metadata/write_metadata_as_turtle/BlogPosting_Citeproc_JSON.yml +94 -40
  294. data/spec/fixtures/vcr_cassettes/Bolognese_Metadata/write_metadata_as_turtle/BlogPosting_DataCite_JSON.yml +94 -40
  295. data/spec/fixtures/vcr_cassettes/Bolognese_Metadata/write_metadata_as_turtle/Crossref_DOI.yml +94 -40
  296. data/spec/fixtures/vcr_cassettes/Bolognese_Metadata/write_metadata_as_turtle/DataONE.yml +94 -40
  297. data/spec/fixtures/vcr_cassettes/Bolognese_Metadata/write_metadata_as_turtle/Dataset.yml +99 -80
  298. data/spec/readers/crossref_reader_spec.rb +32 -20
  299. data/spec/readers/datacite_reader_spec.rb +0 -4
  300. data/spec/writers/bibtex_writer_spec.rb +1 -1
  301. data/spec/writers/citation_writer_spec.rb +1 -1
  302. data/spec/writers/crosscite_writer_spec.rb +4 -4
  303. data/spec/writers/datacite_json_writer_spec.rb +3 -3
  304. data/spec/writers/datacite_writer_spec.rb +4 -4
  305. data/spec/writers/jats_writer_spec.rb +173 -0
  306. data/spec/writers/ris_writer_spec.rb +19 -21
  307. data/spec/writers/schema_org_writer_spec.rb +2 -6
  308. metadata +27 -12
  309. data/spec/fixtures/vcr_cassettes/Bolognese_CLI/convert_file/datacite/default.yml +0 -38
  310. data/spec/fixtures/vcr_cassettes/Bolognese_CLI/convert_file/datacite/to_bibtex.yml +0 -38
  311. data/spec/fixtures/vcr_cassettes/Bolognese_CLI/convert_file/datacite/to_datacite.yml +0 -38
  312. data/spec/fixtures/vcr_cassettes/Bolognese_CLI/convert_file/datacite/to_datacite_invalid.yml +0 -38
  313. data/spec/fixtures/vcr_cassettes/Bolognese_CLI/convert_file/datacite/to_schema_org.yml +0 -38
  314. data/spec/fixtures/vcr_cassettes/Bolognese_Metadata/get_datacite_metadata/BlogPosting_from_string.yml +0 -38
  315. data/spec/fixtures/vcr_cassettes/Bolognese_Metadata/get_datacite_metadata/Schema_4_1_from_string.yml +0 -38
  316. data/spec/fixtures/vcr_cassettes/Bolognese_Metadata/get_datacite_metadata/Schema_4_1_from_string_with_doi_in_options.yml +0 -38
  317. data/spec/fixtures/vcr_cassettes/Bolognese_Metadata/get_datacite_metadata/missing_creator.yml +0 -38
  318. data/spec/fixtures/vcr_cassettes/Bolognese_Metadata/get_datacite_raw/BlogPosting.yml +0 -38
@@ -19,21 +19,27 @@ http_interactions:
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  Server:
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  - Apache-Coyote/1.1
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  Crossref-Deployment-Name:
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- - qs2-2
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+ - qs5-1
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  Content-Type:
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  - text/xml;charset=UTF-8
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  Content-Language:
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  - en-US
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  Date:
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- - Wed, 23 Aug 2017 08:03:41 GMT
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+ - Mon, 23 Oct 2017 18:08:41 GMT
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+ X-Cache:
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+ - MISS from IMP-cache
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+ X-Cache-Lookup:
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+ - MISS from IMP-cache:3128
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+ Via:
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+ - 1.0 IMP-cache (squid/3.1.20)
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  Connection:
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  - close
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  body:
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  encoding: ASCII-8BIT
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  string: !binary |-
34
- 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  http_version:
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- recorded_at: Wed, 23 Aug 2017 08:03:41 GMT
42
+ recorded_at: Mon, 23 Oct 2017 18:08:58 GMT
37
43
  - request:
38
44
  method: get
39
45
  uri: http://api.crossref.org/prefixes/10.1101
@@ -63,17 +69,23 @@ http_interactions:
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69
  Server:
64
70
  - http-kit
65
71
  Date:
66
- - Wed, 23 Aug 2017 08:03:41 GMT
72
+ - Mon, 23 Oct 2017 18:09:00 GMT
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  X-Rate-Limit-Limit:
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  - '50'
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  X-Rate-Limit-Interval:
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  - 1s
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+ X-Cache:
78
+ - MISS from IMP-cache
79
+ X-Cache-Lookup:
80
+ - MISS from IMP-cache:3128
81
+ Via:
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+ - 1.0 IMP-cache (squid/3.1.20)
71
83
  Connection:
72
- - close
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+ - keep-alive
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85
  body:
74
86
  encoding: UTF-8
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87
  string: '{"status":"ok","message-type":"prefix","message-version":"1.0.0","message":{"member":"http:\/\/id.crossref.org\/member\/246","name":"Cold
76
88
  Spring Harbor Laboratory","prefix":"http:\/\/id.crossref.org\/prefix\/10.1101"}}'
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  http_version:
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- recorded_at: Wed, 23 Aug 2017 08:03:42 GMT
90
+ recorded_at: Mon, 23 Oct 2017 18:09:00 GMT
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  recorded_with: VCR 3.0.3
@@ -19,21 +19,27 @@ http_interactions:
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  Server:
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20
  - Apache-Coyote/1.1
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  Crossref-Deployment-Name:
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- - qs2-2
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+ - cr6-1
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  Content-Type:
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  - text/xml;charset=UTF-8
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25
  Content-Language:
26
26
  - en-US
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27
  Date:
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- - Wed, 23 Aug 2017 08:03:36 GMT
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+ - Mon, 23 Oct 2017 18:08:34 GMT
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+ X-Cache:
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+ - MISS from IMP-cache
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+ X-Cache-Lookup:
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+ - MISS from IMP-cache:3128
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+ Via:
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+ - 1.0 IMP-cache (squid/3.1.20)
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  Connection:
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  - close
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37
  body:
32
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  encoding: ASCII-8BIT
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39
  string: !binary |-
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  http_version:
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- recorded_at: Wed, 23 Aug 2017 08:03:53 GMT
42
+ recorded_at: Mon, 23 Oct 2017 18:09:58 GMT
37
43
  - request:
38
44
  method: get
39
45
  uri: http://api.crossref.org/prefixes/10.1101
@@ -63,17 +69,23 @@ http_interactions:
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69
  Server:
64
70
  - http-kit
65
71
  Date:
66
- - Wed, 23 Aug 2017 08:03:53 GMT
72
+ - Mon, 23 Oct 2017 18:10:01 GMT
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  X-Rate-Limit-Limit:
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  - '50'
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75
  X-Rate-Limit-Interval:
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  - 1s
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+ X-Cache:
78
+ - MISS from IMP-cache
79
+ X-Cache-Lookup:
80
+ - MISS from IMP-cache:3128
81
+ Via:
82
+ - 1.0 IMP-cache (squid/3.1.20)
71
83
  Connection:
72
- - close
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+ - keep-alive
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85
  body:
74
86
  encoding: UTF-8
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87
  string: '{"status":"ok","message-type":"prefix","message-version":"1.0.0","message":{"member":"http:\/\/id.crossref.org\/member\/246","name":"Cold
76
88
  Spring Harbor Laboratory","prefix":"http:\/\/id.crossref.org\/prefix\/10.1101"}}'
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  http_version:
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- recorded_at: Wed, 23 Aug 2017 08:03:53 GMT
90
+ recorded_at: Mon, 23 Oct 2017 18:10:00 GMT
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  recorded_with: VCR 3.0.3
@@ -19,21 +19,27 @@ http_interactions:
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  Server:
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20
  - Apache-Coyote/1.1
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  Crossref-Deployment-Name:
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- - qs4-1
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+ - qs3-1
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  Content-Type:
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  - text/xml;charset=UTF-8
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  Content-Language:
26
26
  - en-US
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27
  Date:
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- - Wed, 23 Aug 2017 08:03:55 GMT
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+ - Mon, 23 Oct 2017 18:10:07 GMT
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+ X-Cache:
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+ - MISS from IMP-cache
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+ X-Cache-Lookup:
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+ - MISS from IMP-cache:3128
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+ Via:
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+ - 1.0 IMP-cache (squid/3.1.20)
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  Connection:
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  - close
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  body:
32
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  encoding: ASCII-8BIT
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  string: !binary |-
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  http_version:
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- recorded_at: Wed, 23 Aug 2017 08:03:55 GMT
42
+ recorded_at: Mon, 23 Oct 2017 18:10:07 GMT
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43
  - request:
38
44
  method: get
39
45
  uri: http://api.crossref.org/prefixes/10.1101
@@ -63,17 +69,23 @@ http_interactions:
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69
  Server:
64
70
  - http-kit
65
71
  Date:
66
- - Wed, 23 Aug 2017 08:03:56 GMT
72
+ - Mon, 23 Oct 2017 18:10:09 GMT
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  X-Rate-Limit-Limit:
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  - '50'
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  X-Rate-Limit-Interval:
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  - 1s
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+ X-Cache:
78
+ - MISS from IMP-cache
79
+ X-Cache-Lookup:
80
+ - MISS from IMP-cache:3128
81
+ Via:
82
+ - 1.0 IMP-cache (squid/3.1.20)
71
83
  Connection:
72
- - close
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+ - keep-alive
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  body:
74
86
  encoding: UTF-8
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87
  string: '{"status":"ok","message-type":"prefix","message-version":"1.0.0","message":{"member":"http:\/\/id.crossref.org\/member\/246","name":"Cold
76
88
  Spring Harbor Laboratory","prefix":"http:\/\/id.crossref.org\/prefix\/10.1101"}}'
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  http_version:
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- recorded_at: Wed, 23 Aug 2017 08:03:56 GMT
90
+ recorded_at: Mon, 23 Oct 2017 18:10:08 GMT
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  recorded_with: VCR 3.0.3
@@ -19,21 +19,27 @@ http_interactions:
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  Server:
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20
  - Apache-Coyote/1.1
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  Crossref-Deployment-Name:
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- - cr6-1
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+ - qs5-1
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  - text/xml;charset=UTF-8
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  Content-Language:
26
26
  - en-US
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27
  Date:
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- - Wed, 23 Aug 2017 08:03:52 GMT
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+ - Mon, 23 Oct 2017 18:10:06 GMT
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+ X-Cache:
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+ - MISS from IMP-cache
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+ X-Cache-Lookup:
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+ - MISS from IMP-cache:3128
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+ Via:
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+ - 1.0 IMP-cache (squid/3.1.20)
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  Connection:
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  - close
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  body:
32
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  encoding: ASCII-8BIT
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  string: !binary |-
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35
41
  http_version:
36
- recorded_at: Wed, 23 Aug 2017 08:03:53 GMT
42
+ recorded_at: Mon, 23 Oct 2017 18:10:05 GMT
37
43
  - request:
38
44
  method: get
39
45
  uri: http://api.crossref.org/prefixes/10.1101
@@ -63,17 +69,23 @@ http_interactions:
63
69
  Server:
64
70
  - http-kit
65
71
  Date:
66
- - Wed, 23 Aug 2017 08:03:53 GMT
72
+ - Mon, 23 Oct 2017 18:10:07 GMT
67
73
  X-Rate-Limit-Limit:
68
74
  - '50'
69
75
  X-Rate-Limit-Interval:
70
76
  - 1s
77
+ X-Cache:
78
+ - MISS from IMP-cache
79
+ X-Cache-Lookup:
80
+ - MISS from IMP-cache:3128
81
+ Via:
82
+ - 1.0 IMP-cache (squid/3.1.20)
71
83
  Connection:
72
- - close
84
+ - keep-alive
73
85
  body:
74
86
  encoding: UTF-8
75
87
  string: '{"status":"ok","message-type":"prefix","message-version":"1.0.0","message":{"member":"http:\/\/id.crossref.org\/member\/246","name":"Cold
76
88
  Spring Harbor Laboratory","prefix":"http:\/\/id.crossref.org\/prefix\/10.1101"}}'
77
89
  http_version:
78
- recorded_at: Wed, 23 Aug 2017 08:03:53 GMT
90
+ recorded_at: Mon, 23 Oct 2017 18:10:06 GMT
79
91
  recorded_with: VCR 3.0.3