bolognese 0.9.56 → 0.9.58

data/spec/readers/crossref_reader_spec.rb

@@ -17,7 +17,7 @@ describe Bolognese::Metadata, vcr: true do
     it "DOI with data citation" do
       expect(subject.id).to eq("https://doi.org/10.7554/elife.01567")
       expect(subject.type).to eq("ScholarlyArticle")
-      expect(subject.url).to eq("http://elifesciences.org/lookup/doi/10.7554/eLife.01567")
+      expect(subject.url).to eq("https://elifesciences.org/articles/01567")
       expect(subject.additional_type).to eq("JournalArticle")
       expect(subject.resource_type_general).to eq("Text")
       expect(subject.author.length).to eq(5)
@@ -25,10 +25,10 @@ describe Bolognese::Metadata, vcr: true do
       expect(subject.license).to eq("id"=>"http://creativecommons.org/licenses/by/3.0")
       expect(subject.title).to eq("Automated quantitative histology reveals vascular morphodynamics during Arabidopsis hypocotyl secondary growth")
       expect(subject.date_published).to eq("2014-02-11")
-      expect(subject.date_modified).to eq("2015-08-11T11:35:02Z")
+      expect(subject.date_modified).to eq("2017-10-18T19:09:43Z")
       expect(subject.is_part_of).to eq("type"=>"Periodical", "title"=>"eLife", "issn"=>"2050-084X")
-      expect(subject.references.count).to eq(25)
-      expect(subject.references[19]).to eq("id"=>"https://doi.org/10.5061/dryad.b835k", "type"=>"CreativeWork")
+      expect(subject.references.count).to eq(26)
+      expect(subject.references[20]).to eq("id"=>"https://doi.org/10.5061/dryad.b835k", "type"=>"CreativeWork", "title" => "Data from: Automated quantitative histology reveals vascular morphodynamics during Arabidopsis hypocotyl secondary growth")
       expect(subject.funding).to eq([{"type"=>"Organization", "name"=>"SystemsX"},
                                      {"type"=>"Organization",
                                       "id"=>"https://doi.org/10.13039/501100003043",
@@ -39,7 +39,6 @@ describe Bolognese::Metadata, vcr: true do
                                      {"type"=>"Organization",
                                       "id"=>"https://doi.org/10.13039/501100006390",
                                       "name"=>"University of Lausanne"}])
-      expect(subject.publisher).to eq("eLife Sciences Organisation, Ltd.")
       expect(subject.provider).to eq("Crossref")
     end
 
@@ -58,9 +57,8 @@ describe Bolognese::Metadata, vcr: true do
       expect(subject.license).to eq("id"=>"http://creativecommons.org/licenses/by/4.0")
       expect(subject.date_published).to eq("2006-12-20")
       expect(subject.date_modified).to eq("2017-06-17T12:26:15Z")
-      expect(subject.pagination).to eq("e30")
+      expect(subject.first_page).to eq("e30")
       expect(subject.is_part_of).to eq("type"=>"Periodical", "title"=>"PLoS ONE", "issn"=>"1932-6203")
-      expect(subject.publisher).to eq("Public Library of Science (PLoS)")
       expect(subject.provider).to eq("Crossref")
     end
 
@@ -72,15 +70,14 @@ describe Bolognese::Metadata, vcr: true do
       expect(subject.type).to eq("ScholarlyArticle")
       expect(subject.additional_type).to eq("PostedContent")
       expect(subject.resource_type_general).to eq("Text")
-      expect(subject.author.count).to eq(10)
+      expect(subject.author.count).to eq(11)
       expect(subject.author.last).to eq("type"=>"Person", "id"=>"http://orcid.org/0000-0003-4060-7360", "name"=>"Timothy Clark", "givenName"=>"Timothy", "familyName"=>"Clark")
       expect(subject.title).to eq("A Data Citation Roadmap for Scholarly Data Repositories")
-      expect(subject.alternate_name).to eq("biorxiv;097196v1")
-      expect(subject.description).to start_with("This article presents a practical roadmap")
-      expect(subject.date_published).to eq("2016-12-28")
-      expect(subject.date_modified).to eq("2016-12-29T06:10:20Z")
+      expect(subject.alternate_name).to eq("biorxiv;097196v2")
+      expect(subject.description["text"]).to start_with("This article presents a practical roadmap")
+      expect(subject.date_published).to eq("2017-10-09")
+      expect(subject.date_modified).to eq("2017-10-10T05:10:49Z")
       expect(subject.is_part_of).to be_nil
-      expect(subject.publisher).to eq("Cold Spring Harbor Laboratory")
       expect(subject.provider).to eq("Crossref")
     end
 
@@ -97,9 +94,9 @@ describe Bolognese::Metadata, vcr: true do
       expect(subject.title).to eq("THE IMPACT OF PARASITE MANIPULATION AND PREDATOR FORAGING BEHAVIOR ON PREDATOR–PREY COMMUNITIES")
       expect(subject.date_published).to eq("2006-11")
       expect(subject.date_modified).to eq("2017-04-01T06:47:57Z")
-      expect(subject.pagination).to eq("2832-2841")
+      expect(subject.first_page).to eq("2832")
+      expect(subject.last_page).to eq("2841")
       expect(subject.is_part_of).to eq("type"=>"Periodical", "title"=>"Ecology", "issn"=>"0012-9658")
-      expect(subject.publisher).to eq("Wiley-Blackwell")
       expect(subject.provider).to eq("Crossref")
     end
 
@@ -117,9 +114,9 @@ describe Bolognese::Metadata, vcr: true do
       expect(subject.title).to eq("Delineating a Retesting Zone Using Receiver Operating Characteristic Analysis on Serial QuantiFERON Tuberculosis Test Results in US Healthcare Workers")
       expect(subject.date_published).to eq("2012")
       expect(subject.date_modified).to eq("2016-08-02T18:42:41Z")
-      expect(subject.pagination).to eq("1-7")
-      expect(subject.is_part_of).to eq("type"=>"Periodical", "title"=>"Pulmonary Medicine", "issn"=>["2090-1836", "2090-1844"])
-      expect(subject.publisher).to eq("Hindawi Limited")
+      expect(subject.first_page).to eq("1")
+      expect(subject.last_page).to eq("7")
+      expect(subject.is_part_of).to eq("type"=>"Periodical", "title"=>"Pulmonary Medicine", "issn"=>"2090-1836")
       expect(subject.provider).to eq("Crossref")
     end
 
@@ -137,7 +134,6 @@ describe Bolognese::Metadata, vcr: true do
       expect(subject.date_published).to eq("2015-07")
       expect(subject.date_modified).to eq("2017-06-23T08:44:48Z")
       expect(subject.is_part_of).to eq("type"=>"Periodical", "title"=>"European Journal of Pharmacology", "issn"=>"00142999")
-      expect(subject.publisher).to eq("Elsevier BV")
       expect(subject.provider).to eq("Crossref")
     end
 
@@ -155,7 +151,23 @@ describe Bolognese::Metadata, vcr: true do
       expect(subject.description).to eq("x-ray diffraction structure")
       expect(subject.date_published).to eq("1984-07-17")
       expect(subject.date_modified).to eq("2014-05-27T16:45:59Z")
-      expect(subject.publisher).to eq("Protein Data Bank, Rutgers University")
+      expect(subject.provider).to eq("Crossref")
+    end
+
+    it "book chapter" do
+      input = "https://doi.org/10.1007/978-3-662-46370-3_13"
+      subject = Bolognese::Metadata.new(input: input)
+      expect(subject.id).to eq("https://doi.org/10.1007/978-3-662-46370-3_13")
+      expect(subject.url).to eq("http://link.springer.com/10.1007/978-3-662-46370-3_13")
+      expect(subject.type).to eq("Chapter")
+      expect(subject.additional_type).to eq("BookChapter")
+      expect(subject.resource_type_general).to eq("Text")
+      expect(subject.author.length).to eq(2)
+      expect(subject.author.first).to eq("type"=>"Person", "name"=>"Ronald L. Diercks", "givenName"=>"Ronald L.", "familyName"=>"Diercks")
+      expect(subject.title).to eq("Clinical Symptoms and Physical Examinations")
+      expect(subject.date_published).to eq("2015")
+      expect(subject.date_modified).to eq("2015-04-14T02:31:13Z")
+      expect(subject.publisher).to eq("Springer Berlin Heidelberg")
       expect(subject.provider).to eq("Crossref")
     end
 

data/spec/readers/datacite_reader_spec.rb

@@ -39,7 +39,6 @@ describe Bolognese::Metadata, vcr: true do
       subject = Bolognese::Metadata.new(input: input)
       expect(subject.valid?).to be true
       expect(subject.id).to eq("https://doi.org/10.5438/4k3m-nyvg")
-      expect(subject.url).to eq("https://blog.datacite.org/eating-your-own-dog-food/")
       expect(subject.type).to eq("ScholarlyArticle")
       expect(subject.additional_type).to eq("BlogPosting")
       expect(subject.resource_type_general).to eq("Text")
@@ -61,7 +60,6 @@ describe Bolognese::Metadata, vcr: true do
       subject = Bolognese::Metadata.new(input: input)
       expect(subject.valid?).to be true
       expect(subject.id).to eq("https://doi.org/10.4230/lipics.tqc.2013.93")
-      expect(subject.url).to eq("http://drops.dagstuhl.de/opus/volltexte/2013/4317/")
       expect(subject.type).to eq("ScholarlyArticle")
       expect(subject.additional_type).to eq("ConferencePaper")
       expect(subject.resource_type_general).to eq("Text")
@@ -79,7 +77,6 @@ describe Bolognese::Metadata, vcr: true do
       subject = Bolognese::Metadata.new(input: input)
       expect(subject.valid?).to be true
       expect(subject.id).to eq("https://doi.org/10.5281/zenodo.48440")
-      expect(subject.url).to eq("https://zenodo.org/record/48440")
       expect(subject.type).to eq("SoftwareSourceCode")
       expect(subject.additional_type).to eq("Software")
       expect(subject.resource_type_general).to eq("Software")
@@ -99,7 +96,6 @@ describe Bolognese::Metadata, vcr: true do
       subject = Bolognese::Metadata.new(input: input)
       expect(subject.valid?).to be true
       expect(subject.id).to eq("https://doi.org/10.6084/m9.figshare.4234751.v1")
-      expect(subject.url).to eq("https://figshare.com/articles/RAIN_v1/4234751/1")
       expect(subject.type).to eq("Dataset")
       expect(subject.additional_type).to eq("Dataset")
       expect(subject.resource_type_general).to eq("Dataset")

data/spec/writers/bibtex_writer_spec.rb

@@ -9,7 +9,7 @@ describe Bolognese::Metadata, vcr: true do
       expect(bibtex[:bibtex_type].to_s).to eq("article")
       expect(bibtex[:bibtex_key]).to eq("https://doi.org/10.7554/elife.01567")
       expect(bibtex[:doi]).to eq("10.7554/elife.01567")
-      expect(bibtex[:url]).to eq("http://elifesciences.org/lookup/doi/10.7554/eLife.01567")
+      expect(bibtex[:url]).to eq("https://elifesciences.org/articles/01567")
       expect(bibtex[:title]).to eq("Automated quantitative histology reveals vascular morphodynamics during Arabidopsis hypocotyl secondary growth")
       expect(bibtex[:author]).to eq("Sankar, Martial and Nieminen, Kaisa and Ragni, Laura and Xenarios, Ioannis and Hardtke, Christian S")
       expect(bibtex[:journal]).to eq("eLife")

data/spec/writers/citation_writer_spec.rb

@@ -15,7 +15,7 @@ describe Bolognese::Metadata, vcr: true do
       subject = Bolognese::Metadata.new(input: input, from: "crossref", style: "vancouver", locale: "de-de")
       expect(subject.style).to eq("vancouver")
       expect(subject.locale).to eq("de-de")
-      expect(subject.citation).to eq("1. Sankar M, Nieminen K, Ragni L, Xenarios I, Hardtke CS. Automated quantitative histology reveals vascular morphodynamics during Arabidopsis hypocotyl secondary growth. eLife [Internet]. 2014 Feb 11;3. Available from: http://elifesciences.org/lookup/doi/10.7554/eLife.01567")
+      expect(subject.citation).to eq("1. Sankar M, Nieminen K, Ragni L, Xenarios I, Hardtke CS. Automated quantitative histology reveals vascular morphodynamics during Arabidopsis hypocotyl secondary growth. eLife [Internet]. 2014 Feb 11;3. Available from: https://elifesciences.org/articles/01567")
     end
 
     it "Dataset" do

data/spec/writers/crosscite_writer_spec.rb

@@ -6,11 +6,11 @@ describe Bolognese::Metadata, vcr: true do
       input = "10.7554/eLife.01567"
       subject = Bolognese::Metadata.new(input: input, from: "crossref")
       crosscite = JSON.parse(subject.crosscite)
-      expect(crosscite.fetch("url")).to eq("http://elifesciences.org/lookup/doi/10.7554/eLife.01567")
+      expect(crosscite.fetch("url")).to eq("https://elifesciences.org/articles/01567")
       expect(crosscite.fetch("resource_type_general")).to eq("Text")
       expect(crosscite.fetch("title")).to eq("Automated quantitative histology reveals vascular morphodynamics during Arabidopsis hypocotyl secondary growth")
-      expect(crosscite.fetch("references").length).to eq(25)
-      expect(crosscite.fetch("references").first).to eq("id"=>"https://doi.org/10.1038/nature02100", "type"=>"CreativeWork")
+      expect(crosscite.fetch("references").length).to eq(26)
+      expect(crosscite.fetch("references").first).to eq("type"=>"CreativeWork", "id"=>"https://doi.org/10.1038/nature02100", "title"=>"APL regulates vascular tissue identity in Arabidopsis")
       expect(crosscite.fetch("license")).to eq("id"=>"http://creativecommons.org/licenses/by/3.0")
     end
 
@@ -71,7 +71,7 @@ describe Bolognese::Metadata, vcr: true do
       expect(crosscite.fetch("author").length).to eq(8)
       expect(crosscite.fetch("author").first).to eq("type"=>"Person", "familyName" => "Ollomo", "givenName" => "Benjamin", "name" => "Benjamin Ollomo")
       expect(crosscite.fetch("date_registered")).to eq("2011-02-01T17:32:02Z")
-      expect(crosscite.fetch("date_updated")).to eq("2017-07-14T01:32:56Z")
+      expect(crosscite.fetch("date_updated")).to eq("2017-09-02T07:32:23Z")
       expect(crosscite.fetch("provider_id")).to eq("CDL")
       expect(crosscite.fetch("client_id")).to eq("CDL.DRYAD")
     end

data/spec/writers/datacite_json_writer_spec.rb

@@ -6,11 +6,11 @@ describe Bolognese::Metadata, vcr: true do
       input = "10.7554/eLife.01567"
       subject = Bolognese::Metadata.new(input: input, from: "crossref")
       datacite = JSON.parse(subject.datacite_json)
-      expect(datacite.fetch("url")).to eq("http://elifesciences.org/lookup/doi/10.7554/eLife.01567")
+      expect(datacite.fetch("url")).to eq("https://elifesciences.org/articles/01567")
       expect(datacite.fetch("resource_type_general")).to eq("Text")
       expect(datacite.fetch("title")).to eq("Automated quantitative histology reveals vascular morphodynamics during Arabidopsis hypocotyl secondary growth")
-      expect(datacite.fetch("references").length).to eq(25)
-      expect(datacite.fetch("references").first).to eq("id"=>"https://doi.org/10.1038/nature02100", "type"=>"CreativeWork")
+      expect(datacite.fetch("references").length).to eq(26)
+      expect(datacite.fetch("references").first).to eq("id"=>"https://doi.org/10.1038/nature02100", "type"=>"CreativeWork", "title" => "APL regulates vascular tissue identity in Arabidopsis")
       expect(datacite.fetch("rights")).to eq("id"=>"http://creativecommons.org/licenses/by/3.0")
     end
 

data/spec/writers/datacite_writer_spec.rb

@@ -8,12 +8,12 @@ describe Bolognese::Metadata, vcr: true do
       datacite = Maremma.from_xml(subject.datacite).fetch("resource", {})
       expect(datacite.dig("resourceType", "resourceTypeGeneral")).to eq("Text")
       expect(datacite.dig("titles", "title")).to eq("Automated quantitative histology reveals vascular morphodynamics during Arabidopsis hypocotyl secondary growth")
-      expect(datacite.dig("relatedIdentifiers", "relatedIdentifier").length).to eq(26)
+      expect(datacite.dig("relatedIdentifiers", "relatedIdentifier").length).to eq(27)
       expect(datacite.dig("relatedIdentifiers", "relatedIdentifier").first).to eq("relatedIdentifierType"=>"ISSN", "relationType"=>"IsPartOf", "__content__"=>"2050-084X")
       expect(datacite.dig("relatedIdentifiers", "relatedIdentifier")[1]).to eq("relatedIdentifierType"=>"DOI", "relationType"=>"References", "__content__"=>"https://doi.org/10.1038/nature02100")
       expect(datacite.dig("rightsList")).to eq("rights"=>{"rightsURI"=>"http://creativecommons.org/licenses/by/3.0"})
       expect(datacite.dig("fundingReferences", "fundingReference").count).to eq(4)
-      expect(datacite.dig("fundingReferences", "fundingReference").last).to eq("funderName"=>"University of Lausanne", "funderIdentifier"=>{"funderIdentifierType"=>"Crossref Funder ID", "__content__"=>"https://doi.org/10.13039/501100006390"})
+      expect(datacite.dig("fundingReferences", "fundingReference").last).to eq("funderName"=>"University of Lausanne", "funderIdentifier" => {"funderIdentifierType"=>"Crossref Funder ID", "__content__"=>"https://doi.org/10.13039/501100006390"})
     end
 
     it "with ORCID ID" do
@@ -153,12 +153,12 @@ describe Bolognese::Metadata, vcr: true do
       expect(datacite.dig("identifier", "__content__")).to eq("10.5061/DRYAD.8515")
       expect(datacite.dig("resourceType", "resourceTypeGeneral")).to eq("Dataset")
       expect(datacite.dig("titles", "title")).to eq("Data from: Automated quantitative histology reveals vascular morphodynamics during Arabidopsis hypocotyl secondary growth")
-      expect(datacite.dig("relatedIdentifiers", "relatedIdentifier").length).to eq(26)
+      expect(datacite.dig("relatedIdentifiers", "relatedIdentifier").length).to eq(27)
       expect(datacite.dig("relatedIdentifiers", "relatedIdentifier").first).to eq("relatedIdentifierType"=>"ISSN", "relationType"=>"IsPartOf", "__content__"=>"2050-084X")
       expect(datacite.dig("relatedIdentifiers", "relatedIdentifier")[1]).to eq("relatedIdentifierType"=>"DOI", "relationType"=>"References", "__content__"=>"https://doi.org/10.1038/nature02100")
       expect(datacite.dig("rightsList")).to eq("rights"=>{"rightsURI"=>"http://creativecommons.org/licenses/by/3.0"})
       expect(datacite.dig("fundingReferences", "fundingReference").count).to eq(4)
-      expect(datacite.dig("fundingReferences", "fundingReference").last).to eq("funderName"=>"University of Lausanne", "funderIdentifier"=>{"funderIdentifierType"=>"Crossref Funder ID", "__content__"=>"https://doi.org/10.13039/501100006390"})
+      expect(datacite.dig("fundingReferences", "fundingReference").last).to eq("funderName"=>"University of Lausanne", "funderIdentifier" => {"funderIdentifierType"=>"Crossref Funder ID", "__content__"=>"https://doi.org/10.13039/501100006390"})
     end
 
     it "validates against schema" do

data/spec/writers/jats_writer_spec.rb

@@ -0,0 +1,173 @@
+require 'spec_helper'
+
+describe Bolognese::Metadata, vcr: true do
+  context "write metadata as jats xml" do
+    it "with data citation" do
+      input = "10.7554/eLife.01567"
+      subject = Bolognese::Metadata.new(input: input, from: "crossref")
+      jats = Maremma.from_xml(subject.jats).fetch("element_citation", {})
+      expect(jats.dig("publication_type")).to eq("journal")
+      expect(jats.dig("article_title")).to eq("Automated quantitative histology reveals vascular morphodynamics during Arabidopsis hypocotyl secondary growth")
+      expect(jats.dig("source")).to eq("eLife")
+      expect(jats.dig("person_group", "name").length).to eq(5)
+      expect(jats.dig("person_group", "name").first).to eq("surname"=>"Sankar", "given_names"=>"Martial")
+      expect(jats.dig("year")).to eq("iso_8601_date"=>"2014-02-11", "__content__"=>"2014")
+      expect(jats.dig("month")).to eq("02")
+      expect(jats.dig("day")).to eq("11")
+    end
+
+    it "with ORCID ID" do
+      input = "https://doi.org/10.1155/2012/291294"
+      subject = Bolognese::Metadata.new(input: input, from: "crossref")
+      jats = Maremma.from_xml(subject.jats).fetch("element_citation", {})
+      expect(jats.dig("publication_type")).to eq("journal")
+      expect(jats.dig("article_title")).to eq("Delineating a Retesting Zone Using Receiver Operating Characteristic Analysis on Serial QuantiFERON Tuberculosis Test Results in US Healthcare Workers")
+      expect(jats.dig("source")).to eq("Pulmonary Medicine")
+      expect(jats.dig("person_group", "name").length).to eq(7)
+      expect(jats.dig("person_group", "name").first).to eq("surname"=>"Thanassi", "given_names"=>"Wendy")
+      expect(jats.dig("year")).to eq("iso_8601_date"=>"2012", "__content__"=>"2012")
+    end
+
+    it "with editor" do
+      input = "https://doi.org/10.1371/journal.pone.0000030"
+      subject = Bolognese::Metadata.new(input: input, from: "crossref")
+      jats = Maremma.from_xml(subject.jats).fetch("element_citation", {})
+      expect(jats.dig("publication_type")).to eq("journal")
+      expect(jats.dig("article_title")).to eq("Triose Phosphate Isomerase Deficiency Is Caused by Altered Dimerization–Not Catalytic Inactivity–of the Mutant Enzymes")
+      expect(jats.dig("source")).to eq("PLoS ONE")
+      expect(jats.dig("person_group", 0, "name").length).to eq(5)
+      expect(jats.dig("person_group", 0, "name").first).to eq("surname"=>"Ralser", "given_names"=>"Markus")
+      expect(jats.dig("person_group", 1, "name")).to eq("surname"=>"Janbon", "given_names"=>"Guilhem")
+      expect(jats.dig("year")).to eq("iso_8601_date"=>"2006-12-20", "__content__"=>"2006")
+      expect(jats.dig("month")).to eq("12")
+      expect(jats.dig("day")).to eq("20")
+      expect(jats.dig("pub_id")).to eq("pub_id_type"=>"doi", "__content__"=>"10.1371/journal.pone.0000030")
+    end
+
+    it "book chapter" do
+      input = "https://doi.org/10.5005/jp/books/12414_3"
+      subject = Bolognese::Metadata.new(input: input, from: "crossref")
+      jats = Maremma.from_xml(subject.jats).fetch("element_citation", {})
+      expect(jats.dig("publication_type")).to eq("book")
+      expect(jats.dig("article_title")).to eq("Chapter-02 Physical Examinations")
+      expect(jats.dig("source")).to eq("Jaypee Brothers Medical Publishers (P) Ltd.")
+      expect(jats.dig("person_group", "name")).to eq("surname"=>"Saha", "given_names"=>"Ashis")
+      expect(jats.dig("year")).to eq("iso_8601_date"=>"2015", "__content__"=>"2015")
+      expect(jats.dig("pub_id")).to eq("pub_id_type"=>"doi", "__content__"=>"10.5005/jp/books/12414_3")
+    end
+
+    it "Crossref DOI" do
+      input = fixture_path + "crossref.bib"
+      subject = Bolognese::Metadata.new(input: input, from: "bibtex")
+      jats = Maremma.from_xml(subject.jats).fetch("element_citation", {})
+      expect(jats.dig("publication_type")).to eq("journal")
+      expect(jats.dig("article_title")).to eq("Automated quantitative histology reveals vascular morphodynamics during Arabidopsis hypocotyl secondary growth")
+      expect(jats.dig("source")).to eq("eLife")
+      expect(jats.dig("person_group", "name").length).to eq(5)
+      expect(jats.dig("person_group", "name").first).to eq("surname"=>"Sankar", "given_names"=>"Martial")
+      expect(jats.dig("year")).to eq("iso_8601_date"=>"2014", "__content__"=>"2014")
+      expect(jats.dig("month")).to be_nil
+      expect(jats.dig("pub_id")).to eq("pub_id_type"=>"doi", "__content__"=>"10.7554/elife.01567")
+    end
+
+    it "BlogPosting Citeproc JSON" do
+      input = fixture_path + "citeproc.json"
+      subject = Bolognese::Metadata.new(input: input, from: "citeproc")
+      jats = Maremma.from_xml(subject.jats).fetch("element_citation", {})
+      expect(jats.dig("publication_type")).to be_nil
+      expect(jats.dig("article_title")).to eq("Eating your own Dog Food")
+      expect(jats.dig("source")).to eq("DataCite Blog")
+      expect(jats.dig("person_group", "name")).to eq("surname"=>"Fenner", "given_names"=>"Martin")
+      expect(jats.dig("year")).to eq("iso_8601_date"=>"2016-12-20", "__content__"=>"2016")
+      expect(jats.dig("month")).to eq("12")
+      expect(jats.dig("day")).to eq("20")
+      expect(jats.dig("pub_id")).to eq("pub_id_type"=>"doi", "__content__"=>"10.5438/4k3m-nyvg")
+    end
+
+    it "rdataone" do
+      input = fixture_path + 'codemeta.json'
+      subject = Bolognese::Metadata.new(input: input, from: "codemeta")
+      jats = Maremma.from_xml(subject.jats).fetch("element_citation", {})
+      expect(jats.dig("publication_type")).to eq("software")
+      expect(jats.dig("article_title")).to eq("R Interface to the DataONE REST API")
+      expect(jats.dig("source")).to eq("https://cran.r-project.org")
+      expect(jats.dig("person_group", "name").length).to eq(3)
+      expect(jats.dig("person_group", "name").first).to eq("surname"=>"Jones", "given_names"=>"Matt")
+      expect(jats.dig("year")).to eq("iso_8601_date"=>"2016-05-27", "__content__"=>"2016")
+      expect(jats.dig("month")).to eq("05")
+      expect(jats.dig("day")).to eq("27")
+      expect(jats.dig("pub_id")).to eq("pub_id_type"=>"doi", "__content__"=>"10.5063/f1m61h5x")
+    end
+
+    it "maremma" do
+      input = "https://github.com/datacite/maremma"
+      subject = Bolognese::Metadata.new(input: input, from: "codemeta")
+      jats = Maremma.from_xml(subject.jats).fetch("element_citation", {})
+      expect(jats.dig("publication_type")).to eq("software")
+      expect(jats.dig("article_title")).to eq("Maremma: a Ruby library for simplified network calls")
+      expect(jats.dig("source")).to eq("DataCite")
+      expect(jats.dig("person_group", "name")).to eq("surname"=>"Fenner", "given_names"=>"Martin")
+      expect(jats.dig("year")).to eq("iso_8601_date"=>"2017-02-24", "__content__"=>"2017")
+      expect(jats.dig("month")).to eq("02")
+      expect(jats.dig("day")).to eq("24")
+      expect(jats.dig("pub_id")).to eq("pub_id_type"=>"doi", "__content__"=>"10.5438/qeg0-3gm3")
+    end
+
+    it "Text pass-thru" do
+      input = "https://doi.org/10.23640/07243.5153971"
+      subject = Bolognese::Metadata.new(input: input, from: "datacite")
+      jats = Maremma.from_xml(subject.jats).fetch("element_citation", {})
+      expect(jats.dig("publication_type")).to eq("journal")
+      expect(jats.dig("article_title")).to eq("Recommendation of: ORCID Works Metadata Working Group")
+      expect(jats.dig("source")).to eq("Figshare")
+      expect(jats.dig("person_group", "name").length).to eq(20)
+      expect(jats.dig("person_group", "name").first).to eq("surname"=>"Paglione", "given_names"=>"Laura")
+      expect(jats.dig("year")).to eq("iso_8601_date"=>"2017", "__content__"=>"2017")
+      expect(jats.dig("pub_id")).to eq("pub_id_type"=>"doi", "__content__"=>"10.23640/07243.5153971")
+    end
+
+    it "Dataset in schema 4.0" do
+      input = "https://doi.org/10.5061/DRYAD.8515"
+      subject = Bolognese::Metadata.new(input: input, from: "datacite", regenerate: true)
+      jats = Maremma.from_xml(subject.jats).fetch("element_citation", {})
+      expect(jats.dig("publication_type")).to eq("data")
+      expect(jats.dig("data_title")).to eq("Data from: A new malaria agent in African hominids.")
+      expect(jats.dig("source")).to eq("Dryad Digital Repository")
+      expect(jats.dig("person_group", "name").length).to eq(8)
+      expect(jats.dig("person_group", "name").first).to eq("surname"=>"Ollomo", "given_names"=>"Benjamin")
+      expect(jats.dig("year")).to eq("iso_8601_date"=>"2011", "__content__"=>"2011")
+      expect(jats.dig("pub_id")).to eq("pub_id_type"=>"doi", "__content__"=>"10.5061/dryad.8515")
+    end
+
+    it "with data citation schema.org" do
+      input = "https://blog.datacite.org/eating-your-own-dog-food/"
+      subject = Bolognese::Metadata.new(input: input, from: "schema_org")
+      jats = Maremma.from_xml(subject.jats).fetch("element_citation", {})
+      expect(jats.dig("publication_type")).to be_nil
+      expect(jats.dig("article_title")).to eq("Eating your own Dog Food")
+      expect(jats.dig("source")).to eq("DataCite Blog")
+      expect(jats.dig("person_group", "name")).to eq("surname"=>"Fenner", "given_names"=>"Martin")
+      expect(jats.dig("year")).to eq("iso_8601_date"=>"2016-12-20", "__content__"=>"2016")
+      expect(jats.dig("month")).to eq("12")
+      expect(jats.dig("day")).to eq("20")
+      expect(jats.dig("pub_id")).to eq("pub_id_type"=>"doi", "__content__"=>"10.5438/4k3m-nyvg")
+    end
+  end
+
+  context "change metadata as datacite xml" do
+    it "with data citation" do
+      input = "10.7554/eLife.01567"
+      subject = Bolognese::Metadata.new(input: input, from: "crossref")
+      jats = Maremma.from_xml(subject.jats).fetch("element_citation", {})
+      expect(jats.dig("publication_type")).to eq("journal")
+      expect(jats.dig("article_title")).to eq("Automated quantitative histology reveals vascular morphodynamics during Arabidopsis hypocotyl secondary growth")
+      expect(jats.dig("source")).to eq("eLife")
+      expect(jats.dig("person_group", "name").length).to eq(5)
+      expect(jats.dig("person_group", "name").first).to eq("surname"=>"Sankar", "given_names"=>"Martial")
+      expect(jats.dig("year")).to eq("iso_8601_date"=>"2014-02-11", "__content__"=>"2014")
+      expect(jats.dig("month")).to eq("02")
+      expect(jats.dig("day")).to eq("11")
+      expect(jats.dig("pub_id")).to eq("pub_id_type"=>"doi", "__content__"=>"10.7554/elife.01567")
+    end
+  end
+end

data/spec/writers/ris_writer_spec.rb

@@ -12,9 +12,9 @@ describe Bolognese::Metadata, vcr: true do
       expect(ris[2]).to eq("T2 - eLife")
       expect(ris[3]).to eq("AU - Sankar, Martial")
       expect(ris[8]).to eq("DO - 10.7554/elife.01567")
-      expect(ris[9]).to eq("UR - http://elifesciences.org/lookup/doi/10.7554/eLife.01567")
-      expect(ris[10]).to eq("PY - 2014")
-      expect(ris[11]).to eq("PB - eLife Sciences Organisation, Ltd.")
+      expect(ris[9]).to eq("UR - https://elifesciences.org/articles/01567")
+      expect(ris[10]).to  start_with("AB - Among various advantages")
+      expect(ris[11]).to eq("PY - 2014")
       expect(ris[12]).to eq("VL - 3")
       expect(ris[13]).to eq("ER - ")
     end
@@ -32,9 +32,9 @@ describe Bolognese::Metadata, vcr: true do
       expect(ris[11]).to eq("UR - http://www.hindawi.com/journals/pm/2012/291294/")
       expect(ris[12]).to start_with("AB - . To find a statistically significant separation point for the QuantiFERON")
       expect(ris[13]).to eq("PY - 2012")
-      expect(ris[14]).to eq("PB - Hindawi Limited")
-      expect(ris[15]).to eq("VL - 2012")
-      expect(ris[16]).to eq("SP - 1-7")
+      expect(ris[14]).to eq("VL - 2012")
+      expect(ris[15]).to eq("SP - 1")
+      expect(ris[16]).to eq("EP - 7")
       expect(ris[17]).to eq("ER - ")
     end
 
@@ -47,14 +47,13 @@ describe Bolognese::Metadata, vcr: true do
       expect(ris[1]).to eq("T1 - Visions and reality: the idea of competence-oriented assessment for German medical students is not yet realised in licensing examinations")
       expect(ris[2]).to eq("AU - Huber-Lang, Markus")
       expect(ris[8]).to eq("DO - 10.3205/zma001102")
-      expect(ris[9]).to start_with("UR - http://www.egms.de/en/journals/zma/2017-34/zma001102.shtml")
-      expect(ris[10]).to start_with("AB - Objective: Competence orientation")
-      expect(ris[11]).to eq("KW - medical competence")
-      expect(ris[20]).to eq("PY - 2017")
-      expect(ris[21]).to eq("PB - German Medical Science GMS Publishing House")
-      expect(ris[22]).to eq("AN - urn:nbn:de:0183-zma0011024")
-      expect(ris[24]).to eq("LA - en")
-      expect(ris[25]).to eq("ER - ")
+      expect(ris[9]).to start_with("AB - Objective: Competence orientation")
+      expect(ris[10]).to eq("KW - medical competence")
+      expect(ris[19]).to eq("PY - 2017")
+      expect(ris[20]).to eq("PB - German Medical Science GMS Publishing House")
+      expect(ris[21]).to eq("AN - urn:nbn:de:0183-zma0011024")
+      expect(ris[23]).to eq("LA - en")
+      expect(ris[24]).to eq("ER - ")
     end
 
     it "Crossref DOI" do
@@ -83,13 +82,12 @@ describe Bolognese::Metadata, vcr: true do
       expect(ris[1]).to eq("T1 - Eating your own Dog Food")
       expect(ris[2]).to eq("AU - Fenner, Martin")
       expect(ris[3]).to eq("DO - 10.5438/4k3m-nyvg")
-      expect(ris[4]).to eq("UR - https://blog.datacite.org/eating-your-own-dog-food/")
-      expect(ris[5]).to eq("AB - Eating your own dog food is a slang term to describe that an organization should itself use the products and services it provides. For DataCite this means that we should use DOIs with appropriate metadata and strategies for long-term preservation for...")
-      expect(ris[6]).to eq("KW - datacite")
-      expect(ris[9]).to eq("PY - 2016")
-      expect(ris[10]).to eq("PB - DataCite")
-      expect(ris[11]).to eq("AN - MS-49-3632-5083")
-      expect(ris[12]).to eq("ER - ")
+      expect(ris[4]).to eq("AB - Eating your own dog food is a slang term to describe that an organization should itself use the products and services it provides. For DataCite this means that we should use DOIs with appropriate metadata and strategies for long-term preservation for...")
+      expect(ris[5]).to eq("KW - datacite")
+      expect(ris[8]).to eq("PY - 2016")
+      expect(ris[9]).to eq("PB - DataCite")
+      expect(ris[10]).to eq("AN - MS-49-3632-5083")
+      expect(ris[11]).to eq("ER - ")
     end
 
     it "BlogPosting Citeproc JSON" do