bolognese 0.4.3 → 2.6.1

data/spec/datacite_utils_spec.rb

@@ -1,159 +0,0 @@
-require 'spec_helper'
-
-describe Bolognese::Datacite, vcr: true do
-  let(:id) { "https://doi.org/10.5061/DRYAD.8515" }
-
-  subject { Bolognese::Datacite.new(id: id) }
-
-  context "insert_identifier" do
-    it "doi" do
-      xml = Nokogiri::XML::Builder.new { |xml| subject.insert_identifier(xml) }.to_xml
-      response = Maremma.from_xml(xml)
-      expect(response["identifier"]).to eq("identifierType"=>"DOI", "text"=>"10.5061/DRYAD.8515")
-    end
-  end
-
-  context "insert_creators" do
-    it "insert" do
-      xml = Nokogiri::XML::Builder.new { |xml| subject.insert_creators(xml) }.to_xml
-      response = Maremma.from_xml(xml)
-      expect(response.dig("creators", "creator").first).to eq("creatorName"=>"Ollomo, Benjamin", "givenName"=>"Benjamin", "familyName"=>"Ollomo")
-    end
-  end
-
-  context "insert_contributors" do
-    it "none" do
-      xml = Nokogiri::XML::Builder.new { |xml| subject.insert_contributors(xml) }.to_xml
-      response = Maremma.from_xml(xml)
-      expect(response).to be_nil
-    end
-  end
-
-  context "insert_person" do
-    it "creator only name" do
-      person = { "name" => "Carberry, Josiah" }
-      type = "creator"
-      xml = Nokogiri::XML::Builder.new { |xml| subject.insert_person(xml, person, type) }.to_xml
-      response = Maremma.from_xml(xml)
-      expect(response).to eq("creatorName"=>"Carberry, Josiah")
-    end
-
-    # it "creator given and family name" do
-    #   person = { "givenName" => "Josiah", "familyName" => "Carberry" }
-    #   type = "creator"
-    #   xml = Nokogiri::XML::Builder.new { |xml| subject.insert_person(xml, person, type) }.to_xml
-    #   response = Maremma.from_xml(xml)
-    #   expect(response).to eq("creatorName"=>"Carberry, Josiah")
-    # end
-  end
-
-  context "insert_titles" do
-    it "insert" do
-      xml = Nokogiri::XML::Builder.new { |xml| subject.insert_titles(xml) }.to_xml
-      response = Maremma.from_xml(xml)
-      expect(response.dig("titles", "title")).to eq("Data from: A new malaria agent in African hominids.")
-    end
-  end
-
-  context "insert_publisher" do
-    it "insert" do
-      xml = Nokogiri::XML::Builder.new { |xml| subject.insert_publisher(xml) }.to_xml
-      response = Maremma.from_xml(xml)
-      expect(response["publisher"]).to eq("Dryad Digital Repository")
-    end
-  end
-
-  context "insert_publication_year" do
-    it "insert" do
-      xml = Nokogiri::XML::Builder.new { |xml| subject.insert_publication_year(xml) }.to_xml
-      response = Maremma.from_xml(xml)
-      expect(response["publicationYear"]).to eq("2011")
-    end
-  end
-
-  context "insert_resource_type" do
-    it "insert" do
-      xml = Nokogiri::XML::Builder.new { |xml| subject.insert_resource_type(xml) }.to_xml
-      response = Maremma.from_xml(xml)
-      expect(response["resourceType"]).to eq("resourceTypeGeneral"=>"Dataset", "text"=>"DataPackage")
-    end
-  end
-
-  context "insert_alternate_identifiers" do
-    it "insert" do
-      xml = Nokogiri::XML::Builder.new { |xml| subject.insert_alternate_identifiers(xml) }.to_xml
-      response = Maremma.from_xml(xml)
-      expect(response.dig("alternateIdentifiers", "alternateIdentifier")).to eq("alternateIdentifierType"=>"Local accession number", "text"=>"Ollomo B, Durand P, Prugnolle F, Douzery EJP, Arnathau C, Nkoghe D, Leroy E, Renaud F (2009) A new malaria agent in African hominids. PLoS Pathogens 5(5): e1000446.")
-    end
-  end
-
-  context "insert_dates" do
-    it "insert" do
-      xml = Nokogiri::XML::Builder.new { |xml| subject.insert_dates(xml) }.to_xml
-      response = Maremma.from_xml(xml)
-      expect(response.dig("dates", "date")).to eq("dateType"=>"Issued", "text"=>"2011")
-    end
-  end
-
-  context "insert_subjects" do
-    it "insert" do
-      xml = Nokogiri::XML::Builder.new { |xml| subject.insert_subjects(xml) }.to_xml
-      response = Maremma.from_xml(xml)
-      expect(response.dig("subjects", "subject")).to eq(["Phylogeny", "Malaria", "Parasites", "Taxonomy", "Mitochondrial genome", "Africa", "Plasmodium"])
-    end
-  end
-
-  context "insert_version" do
-    it "insert" do
-      xml = Nokogiri::XML::Builder.new { |xml| subject.insert_version(xml) }.to_xml
-      response = Maremma.from_xml(xml)
-      expect(response.fetch("version", nil)).to eq("1")
-    end
-  end
-
-  context "insert_related_identifiers" do
-    it "rel_identifiers" do
-      expect(subject.rel_identifiers).to eq([{"text"=>"https://doi.org/10.5061/dryad.8515/1",
-                                              "related_identifier_type"=>"DOI",
-                                              "relation_type"=>"HasPart"},
-                                             {"text"=>"https://doi.org/10.5061/dryad.8515/2",
-                                              "related_identifier_type"=>"DOI",
-                                              "relation_type"=>"HasPart"},
-                                             {"text"=>"https://doi.org/10.1371/journal.ppat.1000446",
-                                              "related_identifier_type"=>"DOI",
-                                              "relation_type"=>"References"}])
-    end
-
-    it "insert" do
-      xml = Nokogiri::XML::Builder.new { |xml| subject.insert_related_identifiers(xml) }.to_xml
-      response = Maremma.from_xml(xml)
-      expect(response.dig("relatedIdentifiers", "relatedIdentifier")).to eq([{"relatedIdentifierType"=>"DOI",
-                                                                              "relationType"=>"HasPart",
-                                                                              "text"=>"https://doi.org/10.5061/dryad.8515/1"},
-                                                                             {"relatedIdentifierType"=>"DOI",
-                                                                              "relationType"=>"HasPart",
-                                                                              "text"=>"https://doi.org/10.5061/dryad.8515/2"},
-                                                                             {"relatedIdentifierType"=>"DOI",
-                                                                              "relationType"=>"References",
-                                                                              "text"=>"https://doi.org/10.1371/journal.ppat.1000446"}])
-    end
-  end
-
-  context "insert_rights_list" do
-    it "insert" do
-      xml = Nokogiri::XML::Builder.new { |xml| subject.insert_rights_list(xml) }.to_xml
-      response = Maremma.from_xml(xml)
-      expect(response.dig("rightsList", "rights")).to eq("rightsURI"=>"http://creativecommons.org/publicdomain/zero/1.0/", "text"=>"Public Domain (CC0 1.0)")
-    end
-  end
-
-  context "insert_descriptions" do
-    it "insert" do
-      id = "https://doi.org/10.5438/4K3M-NYVG"
-      subject = Bolognese::Datacite.new(id: id)
-      xml = Nokogiri::XML::Builder.new { |xml| subject.insert_descriptions(xml) }.to_xml
-      response = Maremma.from_xml(xml)
-      expect(response.dig("descriptions", "description")).to eq("descriptionType" => "Abstract", "text" => "Eating your own dog food is a slang term to describe that an organization should itself use the products and services it provides. For DataCite this means that we should use DOIs with appropriate metadata and strategies for long-term preservation for...")
-    end
-  end
-end

data/spec/doi_utils_spec.rb

@@ -1,89 +0,0 @@
-require 'spec_helper'
-
-describe Bolognese::Crossref, vcr: true do
-  let(:id) { "https://doi.org/10.1371/journal.pone.0000030" }
-
-  subject { Bolognese::Crossref.new(id: id) }
-
-  context "normalize doi" do
-    it "doi" do
-      doi = "10.5061/DRYAD.8515"
-      response = subject.normalize_doi(doi)
-      expect(response).to eq("https://doi.org/10.5061/dryad.8515")
-    end
-
-    it "doi with protocol" do
-      doi = "doi:10.5061/DRYAD.8515"
-      response = subject.normalize_doi(doi)
-      expect(response).to eq("https://doi.org/10.5061/dryad.8515")
-    end
-
-    it "SICI doi" do
-      doi = "10.1890/0012-9658(2006)87[2832:tiopma]2.0.co;2"
-      response = subject.normalize_doi(doi)
-      expect(response).to eq("https://doi.org/10.1890/0012-9658(2006)87%5B2832:tiopma%5D2.0.co;2")
-    end
-
-    it "https url" do
-      doi = "https://doi.org/10.5061/dryad.8515"
-      response = subject.normalize_doi(doi)
-      expect(response).to eq("https://doi.org/10.5061/dryad.8515")
-    end
-
-    it "dx.doi.org url" do
-      doi = "http://dx.doi.org/10.5061/dryad.8515"
-      response = subject.normalize_doi(doi)
-      expect(response).to eq("https://doi.org/10.5061/dryad.8515")
-    end
-
-    it "not valid doi prefix" do
-      doi = "https://doi.org/20.5061/dryad.8515"
-      response = subject.normalize_doi(doi)
-      expect(response).to be_nil
-    end
-
-    it "doi prefix with string" do
-      doi = "https://doi.org/10.506X/dryad.8515"
-      response = subject.normalize_doi(doi)
-      expect(response).to be_nil
-    end
-
-    it "doi prefix too long" do
-      doi = "https://doi.org/10.506123/dryad.8515"
-      response = subject.normalize_doi(doi)
-      expect(response).to be_nil
-    end
-
-    it "doi from url without doi proxy" do
-      doi = "https://handle.net/10.5061/dryad.8515"
-      response = subject.normalize_doi(doi)
-      expect(response).to be_nil
-    end
-  end
-
-  context "doi registration agency" do
-    it "datacite" do
-      doi = "https://doi.org/10.5061/dryad.8515"
-      response = subject.get_doi_ra(doi)
-      expect(response["name"]).to eq("DataCite")
-    end
-
-    it "crossref" do
-      doi = "https://doi.org/10.1371/journal.pone.0000030"
-      response = subject.get_doi_ra(doi)
-      expect(response["name"]).to eq("Crossref")
-    end
-
-    it "medra" do
-      doi = "https://doi.org/10.1392/roma081203"
-      response = subject.get_doi_ra(doi)
-      expect(response["name"]).to eq("mEDRA")
-    end
-
-    it "not found" do
-      doi = "https://doi.org/10.5061/dryad.8515x"
-      response = subject.get_doi_ra(doi)
-      expect(response["errors"]).to eq([{"DOI"=>"10.5061/dryad.8515x", "status"=>"Invalid DOI"}])
-    end
-  end
-end