bolognese 0.4.3 → 2.6.1
This diff represents the content of publicly available package versions that have been released to one of the supported registries. The information contained in this diff is provided for informational purposes only and reflects changes between package versions as they appear in their respective public registries.
- checksums.yaml +5 -5
- data/.github/workflows/build.yml +9 -0
- data/.github/workflows/changelog.yml +36 -0
- data/.github/workflows/ci.yml +22 -0
- data/.github/workflows/pull-request.yml +9 -0
- data/.github/workflows/release.yml +32 -0
- data/.gitignore +4 -0
- data/.rubocop.yml +658 -0
- data/CHANGELOG.md +1864 -0
- data/CITATION +17 -0
- data/Gemfile +1 -1
- data/Gemfile.lock +250 -98
- data/README.md +963 -21
- data/Rakefile +1 -0
- data/bin/bolognese +5 -1
- data/bolognese.gemspec +33 -21
- data/lib/bolognese/array.rb +13 -0
- data/lib/bolognese/author_utils.rb +147 -33
- data/lib/bolognese/citeproc_extensions.rb +48 -0
- data/lib/bolognese/cli.rb +28 -21
- data/lib/bolognese/datacite_utils.rb +292 -104
- data/lib/bolognese/doi_utils.rb +44 -20
- data/lib/bolognese/metadata.rb +249 -23
- data/lib/bolognese/metadata_utils.rb +228 -0
- data/lib/bolognese/pubmed.rb +2 -0
- data/lib/bolognese/readers/bibtex_reader.rb +100 -0
- data/lib/bolognese/readers/citeproc_reader.rb +125 -0
- data/lib/bolognese/readers/codemeta_reader.rb +108 -0
- data/lib/bolognese/readers/crosscite_reader.rb +17 -0
- data/lib/bolognese/readers/crossref_reader.rb +413 -0
- data/lib/bolognese/readers/datacite_json_reader.rb +17 -0
- data/lib/bolognese/readers/datacite_reader.rb +341 -0
- data/lib/bolognese/readers/npm_reader.rb +115 -0
- data/lib/bolognese/readers/ris_reader.rb +114 -0
- data/lib/bolognese/readers/schema_org_reader.rb +264 -0
- data/lib/bolognese/string.rb +3 -1
- data/lib/bolognese/utils.rb +1463 -25
- data/lib/bolognese/version.rb +1 -1
- data/lib/bolognese/whitelist_scrubber.rb +47 -0
- data/lib/bolognese/writers/bibtex_writer.rb +32 -0
- data/lib/bolognese/writers/citation_writer.rb +14 -0
- data/lib/bolognese/writers/citeproc_writer.rb +11 -0
- data/lib/bolognese/writers/codemeta_writer.rb +29 -0
- data/lib/bolognese/writers/crosscite_writer.rb +11 -0
- data/lib/bolognese/writers/crossref_writer.rb +11 -0
- data/lib/bolognese/writers/csv_writer.rb +24 -0
- data/lib/bolognese/writers/datacite_json_writer.rb +13 -0
- data/lib/bolognese/writers/datacite_writer.rb +12 -0
- data/lib/bolognese/writers/jats_writer.rb +137 -0
- data/lib/bolognese/writers/rdf_xml_writer.rb +11 -0
- data/lib/bolognese/writers/ris_writer.rb +29 -0
- data/lib/bolognese/writers/schema_org_writer.rb +55 -0
- data/lib/bolognese/writers/turtle_writer.rb +11 -0
- data/lib/bolognese.rb +19 -5
- data/package.json +12 -0
- data/resources/2008/09/xsd.xsl +997 -0
- data/resources/datacite-contributorType-v4.xsd +35 -0
- data/resources/datacite-dateType-v4.xsd +25 -0
- data/resources/datacite-descriptionType-v4.xsd +19 -0
- data/resources/datacite-funderIdentifierType-v4.xsd +15 -0
- data/resources/datacite-nameType-v4.xsd +10 -0
- data/resources/datacite-relatedIdentifierType-v4.xsd +34 -0
- data/resources/datacite-relationType-v4.xsd +49 -0
- data/resources/datacite-resourceType-v4.xsd +28 -0
- data/resources/datacite-titleType-v4.xsd +14 -0
- data/resources/kernel-2.1/include/datacite-contributorType-v1.1.xsd +22 -0
- data/resources/kernel-2.1/include/datacite-contributorType-v2.xsd +3 -0
- data/resources/kernel-2.1/include/datacite-dateType-v1.1.xsd +31 -0
- data/resources/kernel-2.1/include/datacite-dateType-v2.xsd +3 -0
- data/resources/kernel-2.1/include/datacite-descriptionType-v1.1.xsd +14 -0
- data/resources/kernel-2.1/include/datacite-descriptionType-v2.xsd +3 -0
- data/resources/kernel-2.1/include/datacite-relatedIdentifierType-v1.1.xsd +24 -0
- data/resources/kernel-2.1/include/datacite-relatedIdentifierType-v2.xsd +3 -0
- data/resources/kernel-2.1/include/datacite-relationType-v1.1.xsd +29 -0
- data/resources/kernel-2.1/include/datacite-relationType-v2.xsd +3 -0
- data/resources/kernel-2.1/include/datacite-resourceType-v1.1.xsd +22 -0
- data/resources/kernel-2.1/include/datacite-resourceType-v2.xsd +3 -0
- data/resources/kernel-2.1/include/datacite-titleType-v1.1.xsd +11 -0
- data/resources/kernel-2.1/include/datacite-titleType-v2.xsd +3 -0
- data/resources/kernel-2.1/metadata.xsd +315 -0
- data/resources/kernel-2.2/include/datacite-contributorType-v2.xsd +29 -0
- data/resources/kernel-2.2/include/datacite-dateType-v2.xsd +21 -0
- data/resources/kernel-2.2/include/datacite-descriptionType-v2.xsd +15 -0
- data/resources/kernel-2.2/include/datacite-relatedIdentifierType-v2.xsd +25 -0
- data/resources/kernel-2.2/include/datacite-relationType-v2.xsd +29 -0
- data/resources/kernel-2.2/include/datacite-resourceType-v2.xsd +23 -0
- data/resources/kernel-2.2/include/datacite-titleType-v2.xsd +10 -0
- data/resources/kernel-2.2/metadata.xsd +316 -0
- data/resources/kernel-3/include/datacite-contributorType-v3.1.xsd +35 -0
- data/resources/kernel-3/include/datacite-dateType-v3.xsd +21 -0
- data/resources/kernel-3/include/datacite-descriptionType-v3.xsd +17 -0
- data/resources/kernel-3/include/datacite-relatedIdentifierType-v3.1.xsd +30 -0
- data/resources/kernel-3/include/datacite-relationType-v3.1.xsd +38 -0
- data/resources/kernel-3/include/datacite-resourceType-v3.xsd +26 -0
- data/resources/kernel-3/include/datacite-titleType-v3.xsd +12 -0
- data/resources/kernel-3/include/xml.xsd +286 -0
- data/resources/kernel-3/metadata.xsd +380 -0
- data/resources/kernel-3.0/include/datacite-contributorType-v3.xsd +33 -0
- data/resources/kernel-3.0/include/datacite-dateType-v3.xsd +21 -0
- data/resources/kernel-3.0/include/datacite-descriptionType-v3.xsd +17 -0
- data/resources/kernel-3.0/include/datacite-relatedIdentifierType-v3.xsd +27 -0
- data/resources/kernel-3.0/include/datacite-relationType-v3.xsd +33 -0
- data/resources/kernel-3.0/include/datacite-resourceType-v3.xsd +26 -0
- data/resources/kernel-3.0/include/datacite-titleType-v3.xsd +12 -0
- data/resources/kernel-3.0/include/xml.xsd +286 -0
- data/resources/kernel-3.0/metadata.xsd +377 -0
- data/resources/kernel-3.1/include/datacite-contributorType-v3.1.xsd +35 -0
- data/resources/kernel-3.1/include/datacite-dateType-v3.xsd +21 -0
- data/resources/kernel-3.1/include/datacite-descriptionType-v3.xsd +17 -0
- data/resources/kernel-3.1/include/datacite-relatedIdentifierType-v3.1.xsd +30 -0
- data/resources/kernel-3.1/include/datacite-relationType-v3.1.xsd +38 -0
- data/resources/kernel-3.1/include/datacite-resourceType-v3.xsd +26 -0
- data/resources/kernel-3.1/include/datacite-titleType-v3.xsd +12 -0
- data/resources/kernel-3.1/include/xml.xsd +286 -0
- data/resources/kernel-3.1/metadata.xsd +380 -0
- data/resources/kernel-4/include/datacite-contributorType-v4.xsd +37 -0
- data/resources/kernel-4/include/datacite-dateType-v4.xsd +27 -0
- data/resources/kernel-4/include/datacite-descriptionType-v4.xsd +19 -0
- data/resources/kernel-4/include/datacite-funderIdentifierType-v4.xsd +16 -0
- data/resources/kernel-4/include/datacite-nameType-v4.xsd +10 -0
- data/resources/kernel-4/include/datacite-numberType-v4.xsd +12 -0
- data/resources/kernel-4/include/datacite-relatedIdentifierType-v4.xsd +39 -0
- data/resources/kernel-4/include/datacite-relationType-v4.xsd +59 -0
- data/resources/kernel-4/include/datacite-resourceType-v4.xsd +52 -0
- data/resources/kernel-4/include/datacite-titleType-v4.xsd +14 -0
- data/resources/kernel-4/include/xml.xsd +286 -0
- data/resources/kernel-4/metadata.xsd +715 -0
- data/resources/kernel-4.0/include/datacite-contributorType-v4.xsd +1 -1
- data/resources/kernel-4.0/include/datacite-dateType-v4.xsd +1 -1
- data/resources/kernel-4.0/include/datacite-descriptionType-v4.xsd +1 -1
- data/resources/kernel-4.0/include/datacite-funderIdentifierType-v4.xsd +1 -1
- data/resources/kernel-4.0/include/datacite-relatedIdentifierType-v4.xsd +1 -1
- data/resources/kernel-4.0/include/datacite-relationType-v4.xsd +1 -1
- data/resources/kernel-4.0/include/datacite-resourceType-v4.xsd +1 -1
- data/resources/kernel-4.0/include/datacite-titleType-v4.xsd +1 -1
- data/resources/kernel-4.0/include/xml.xsd +286 -0
- data/resources/kernel-4.0/metadata.xsd +2 -2
- data/resources/kernel-4.1/include/datacite-contributorType-v4.xsd +35 -0
- data/resources/kernel-4.1/include/datacite-dateType-v4.1.xsd +23 -0
- data/resources/kernel-4.1/include/datacite-descriptionType-v4.xsd +19 -0
- data/resources/kernel-4.1/include/datacite-funderIdentifierType-v4.xsd +15 -0
- data/resources/kernel-4.1/include/datacite-nameType-v4.1.xsd +10 -0
- data/resources/kernel-4.1/include/datacite-relatedIdentifierType-v4.xsd +32 -0
- data/resources/kernel-4.1/include/datacite-relationType-v4.1.xsd +46 -0
- data/resources/kernel-4.1/include/datacite-resourceType-v4.1.xsd +28 -0
- data/resources/kernel-4.1/include/datacite-titleType-v4.xsd +14 -0
- data/resources/kernel-4.1/include/xml.xsd +286 -0
- data/resources/kernel-4.1/metadata.xsd +483 -0
- data/resources/kernel-4.2/include/datacite-contributorType-v4.xsd +35 -0
- data/resources/kernel-4.2/include/datacite-dateType-v4.xsd +25 -0
- data/resources/kernel-4.2/include/datacite-descriptionType-v4.xsd +19 -0
- data/resources/kernel-4.2/include/datacite-funderIdentifierType-v4.xsd +15 -0
- data/resources/kernel-4.2/include/datacite-nameType-v4.xsd +10 -0
- data/resources/kernel-4.2/include/datacite-relatedIdentifierType-v4.xsd +34 -0
- data/resources/kernel-4.2/include/datacite-relationType-v4.xsd +49 -0
- data/resources/kernel-4.2/include/datacite-resourceType-v4.xsd +28 -0
- data/resources/kernel-4.2/include/datacite-titleType-v4.xsd +14 -0
- data/resources/kernel-4.2/include/xml.xsd +286 -0
- data/resources/kernel-4.2/metadata.xsd +479 -0
- data/resources/kernel-4.3/include/datacite-contributorType-v4.xsd +35 -0
- data/resources/kernel-4.3/include/datacite-dateType-v4.xsd +25 -0
- data/resources/kernel-4.3/include/datacite-descriptionType-v4.xsd +19 -0
- data/resources/kernel-4.3/include/datacite-funderIdentifierType-v4.xsd +16 -0
- data/resources/kernel-4.3/include/datacite-nameType-v4.xsd +10 -0
- data/resources/kernel-4.3/include/datacite-relatedIdentifierType-v4.xsd +34 -0
- data/resources/kernel-4.3/include/datacite-relationType-v4.xsd +49 -0
- data/resources/kernel-4.3/include/datacite-resourceType-v4.xsd +28 -0
- data/resources/kernel-4.3/include/datacite-titleType-v4.xsd +14 -0
- data/resources/kernel-4.3/include/xml.xsd +286 -0
- data/resources/kernel-4.3/metadata.xsd +515 -0
- data/resources/kernel-4.4/include/datacite-contributorType-v4.xsd +35 -0
- data/resources/kernel-4.4/include/datacite-dateType-v4.xsd +25 -0
- data/resources/kernel-4.4/include/datacite-descriptionType-v4.xsd +19 -0
- data/resources/kernel-4.4/include/datacite-funderIdentifierType-v4.xsd +16 -0
- data/resources/kernel-4.4/include/datacite-nameType-v4.xsd +10 -0
- data/resources/kernel-4.4/include/datacite-numberType-v4.xsd +12 -0
- data/resources/kernel-4.4/include/datacite-relatedIdentifierType-v4.xsd +34 -0
- data/resources/kernel-4.4/include/datacite-relationType-v4.xsd +51 -0
- data/resources/kernel-4.4/include/datacite-resourceType-v4.xsd +43 -0
- data/resources/kernel-4.4/include/datacite-titleType-v4.xsd +14 -0
- data/resources/kernel-4.4/include/xml.xsd +286 -0
- data/resources/kernel-4.4/metadata.xsd +707 -0
- data/resources/kernel-4.5/include/datacite-contributorType-v4.xsd +35 -0
- data/resources/kernel-4.5/include/datacite-dateType-v4.xsd +25 -0
- data/resources/kernel-4.5/include/datacite-descriptionType-v4.xsd +19 -0
- data/resources/kernel-4.5/include/datacite-funderIdentifierType-v4.xsd +16 -0
- data/resources/kernel-4.5/include/datacite-nameType-v4.xsd +10 -0
- data/resources/kernel-4.5/include/datacite-numberType-v4.xsd +12 -0
- data/resources/kernel-4.5/include/datacite-relatedIdentifierType-v4.xsd +34 -0
- data/resources/kernel-4.5/include/datacite-relationType-v4.xsd +53 -0
- data/resources/kernel-4.5/include/datacite-resourceType-v4.xsd +45 -0
- data/resources/kernel-4.5/include/datacite-titleType-v4.xsd +14 -0
- data/resources/kernel-4.5/include/xml.xsd +286 -0
- data/resources/kernel-4.5/metadata.xsd +711 -0
- data/resources/kernel-4.6/include/datacite-contributorType-v4.xsd +37 -0
- data/resources/kernel-4.6/include/datacite-dateType-v4.xsd +27 -0
- data/resources/kernel-4.6/include/datacite-descriptionType-v4.xsd +19 -0
- data/resources/kernel-4.6/include/datacite-funderIdentifierType-v4.xsd +16 -0
- data/resources/kernel-4.6/include/datacite-nameType-v4.xsd +10 -0
- data/resources/kernel-4.6/include/datacite-numberType-v4.xsd +12 -0
- data/resources/kernel-4.6/include/datacite-relatedIdentifierType-v4.xsd +37 -0
- data/resources/kernel-4.6/include/datacite-relationType-v4.xsd +57 -0
- data/resources/kernel-4.6/include/datacite-resourceType-v4.xsd +49 -0
- data/resources/kernel-4.6/include/datacite-titleType-v4.xsd +14 -0
- data/resources/kernel-4.6/include/xml.xsd +286 -0
- data/resources/kernel-4.6/metadata.xsd +712 -0
- data/resources/kernel-4.7/include/datacite-contributorType-v4.xsd +37 -0
- data/resources/kernel-4.7/include/datacite-dateType-v4.xsd +27 -0
- data/resources/kernel-4.7/include/datacite-descriptionType-v4.xsd +19 -0
- data/resources/kernel-4.7/include/datacite-funderIdentifierType-v4.xsd +16 -0
- data/resources/kernel-4.7/include/datacite-nameType-v4.xsd +10 -0
- data/resources/kernel-4.7/include/datacite-numberType-v4.xsd +12 -0
- data/resources/kernel-4.7/include/datacite-relatedIdentifierType-v4.xsd +39 -0
- data/resources/kernel-4.7/include/datacite-relationType-v4.xsd +59 -0
- data/resources/kernel-4.7/include/datacite-resourceType-v4.xsd +52 -0
- data/resources/kernel-4.7/include/datacite-titleType-v4.xsd +14 -0
- data/resources/kernel-4.7/include/xml.xsd +286 -0
- data/resources/kernel-4.7/metadata.xsd +715 -0
- data/resources/oecd/dfg-mappings.json +1866 -0
- data/resources/oecd/for-mappings.json +1101 -0
- data/resources/oecd/fos-mappings.json +198 -0
- data/resources/schema_org/jsonldcontext.json +7477 -0
- data/resources/spdx/licenses.json +5297 -0
- data/resources/xml.xsd +286 -0
- metadata +466 -179
- data/.travis.yml +0 -23
- data/lib/bolognese/crossref.rb +0 -233
- data/lib/bolognese/datacite.rb +0 -176
- data/lib/bolognese/date_utils.rb +0 -48
- data/lib/bolognese/github.rb +0 -106
- data/lib/bolognese/orcid.rb +0 -24
- data/lib/bolognese/schema_org.rb +0 -170
- data/spec/cli_spec.rb +0 -56
- data/spec/crossref_spec.rb +0 -190
- data/spec/datacite_spec.rb +0 -93
- data/spec/datacite_utils_spec.rb +0 -159
- data/spec/doi_utils_spec.rb +0 -89
- data/spec/fixtures/crossref.xml +0 -742
- data/spec/fixtures/datacite.xml +0 -40
- data/spec/fixtures/vcr_cassettes/Bolognese_CLI/read/crossref/as_crossref.yml +0 -760
- data/spec/fixtures/vcr_cassettes/Bolognese_CLI/read/crossref/as_datacite.yml +0 -1476
- data/spec/fixtures/vcr_cassettes/Bolognese_CLI/read/crossref/as_schema_org.yml +0 -1476
- data/spec/fixtures/vcr_cassettes/Bolognese_CLI/read/datacite/as_datacite.yml +0 -214
- data/spec/fixtures/vcr_cassettes/Bolognese_CLI/read/datacite/as_schema_org.yml +0 -384
- data/spec/fixtures/vcr_cassettes/Bolognese_CLI/read/schema_org/as_datacite.yml +0 -653
- data/spec/fixtures/vcr_cassettes/Bolognese_CLI/read/schema_org/as_schema_org.yml +0 -653
- data/spec/fixtures/vcr_cassettes/Bolognese_Crossref/doi_registration_agency/crossref.yml +0 -971
- data/spec/fixtures/vcr_cassettes/Bolognese_Crossref/doi_registration_agency/datacite.yml +0 -971
- data/spec/fixtures/vcr_cassettes/Bolognese_Crossref/doi_registration_agency/medra.yml +0 -971
- data/spec/fixtures/vcr_cassettes/Bolognese_Crossref/doi_registration_agency/not_found.yml +0 -971
- data/spec/fixtures/vcr_cassettes/Bolognese_Crossref/get_metadata/DOI_with_ORCID_ID.yml +0 -506
- data/spec/fixtures/vcr_cassettes/Bolognese_Crossref/get_metadata/DOI_with_SICI_DOI.yml +0 -214
- data/spec/fixtures/vcr_cassettes/Bolognese_Crossref/get_metadata/DOI_with_data_citation.yml +0 -901
- data/spec/fixtures/vcr_cassettes/Bolognese_Crossref/get_metadata/date_in_future.yml +0 -305
- data/spec/fixtures/vcr_cassettes/Bolognese_Crossref/get_metadata/journal_article.yml +0 -1080
- data/spec/fixtures/vcr_cassettes/Bolognese_Crossref/get_metadata/not_found_error.yml +0 -183
- data/spec/fixtures/vcr_cassettes/Bolognese_Crossref/get_metadata/posted_content.yml +0 -389
- data/spec/fixtures/vcr_cassettes/Bolognese_Crossref/get_metadata_as_datacite_xml/DOI_with_ORCID_ID.yml +0 -506
- data/spec/fixtures/vcr_cassettes/Bolognese_Crossref/get_metadata_as_datacite_xml/DOI_with_data_citation.yml +0 -901
- data/spec/fixtures/vcr_cassettes/Bolognese_Crossref/get_metadata_as_datacite_xml/with_ORCID_ID.yml +0 -366
- data/spec/fixtures/vcr_cassettes/Bolognese_Crossref/get_metadata_as_datacite_xml/with_data_citation.yml +0 -719
- data/spec/fixtures/vcr_cassettes/Bolognese_Crossref/get_metadata_as_datacite_xml/with_editor.yml +0 -930
- data/spec/fixtures/vcr_cassettes/Bolognese_Crossref/get_metadata_as_string/DOI_with_data_citation.yml +0 -719
- data/spec/fixtures/vcr_cassettes/Bolognese_Crossref/normalize_doi/SICI_doi.yml +0 -930
- data/spec/fixtures/vcr_cassettes/Bolognese_Crossref/normalize_doi/doi.yml +0 -930
- data/spec/fixtures/vcr_cassettes/Bolognese_Crossref/normalize_doi/doi_from_url_without_doi_proxy.yml +0 -930
- data/spec/fixtures/vcr_cassettes/Bolognese_Crossref/normalize_doi/doi_prefix_too_long.yml +0 -930
- data/spec/fixtures/vcr_cassettes/Bolognese_Crossref/normalize_doi/doi_prefix_with_string.yml +0 -930
- data/spec/fixtures/vcr_cassettes/Bolognese_Crossref/normalize_doi/doi_with_protocol.yml +0 -930
- data/spec/fixtures/vcr_cassettes/Bolognese_Crossref/normalize_doi/dx_doi_org_url.yml +0 -930
- data/spec/fixtures/vcr_cassettes/Bolognese_Crossref/normalize_doi/https_url.yml +0 -930
- data/spec/fixtures/vcr_cassettes/Bolognese_Crossref/normalize_doi/not_valid_doi_prefix.yml +0 -930
- data/spec/fixtures/vcr_cassettes/Bolognese_Crossref/normalize_ids/doi.yml +0 -930
- data/spec/fixtures/vcr_cassettes/Bolognese_Crossref/normalize_ids/url.yml +0 -930
- data/spec/fixtures/vcr_cassettes/Bolognese_Crossref/normalize_url/doi.yml +0 -930
- data/spec/fixtures/vcr_cassettes/Bolognese_Crossref/normalize_url/url.yml +0 -930
- data/spec/fixtures/vcr_cassettes/Bolognese_Crossref/parse_attribute/array.yml +0 -930
- data/spec/fixtures/vcr_cassettes/Bolognese_Crossref/parse_attribute/hash.yml +0 -930
- data/spec/fixtures/vcr_cassettes/Bolognese_Crossref/parse_attribute/nil.yml +0 -930
- data/spec/fixtures/vcr_cassettes/Bolognese_Crossref/parse_attribute/string.yml +0 -930
- data/spec/fixtures/vcr_cassettes/Bolognese_Crossref/parse_attributes/array.yml +0 -930
- data/spec/fixtures/vcr_cassettes/Bolognese_Crossref/parse_attributes/hash.yml +0 -930
- data/spec/fixtures/vcr_cassettes/Bolognese_Crossref/parse_attributes/nil.yml +0 -930
- data/spec/fixtures/vcr_cassettes/Bolognese_Crossref/parse_attributes/string.yml +0 -930
- data/spec/fixtures/vcr_cassettes/Bolognese_Crossref/validate_url/DOI.yml +0 -930
- data/spec/fixtures/vcr_cassettes/Bolognese_Crossref/validate_url/URL.yml +0 -930
- data/spec/fixtures/vcr_cassettes/Bolognese_Crossref/validate_url/string.yml +0 -930
- data/spec/fixtures/vcr_cassettes/Bolognese_Datacite/get_metadata/BlogPosting.yml +0 -477
- data/spec/fixtures/vcr_cassettes/Bolognese_Datacite/get_metadata/Dataset.yml +0 -1925
- data/spec/fixtures/vcr_cassettes/Bolognese_Datacite/get_metadata/Date.yml +0 -458
- data/spec/fixtures/vcr_cassettes/Bolognese_Datacite/get_metadata_as_string/Dataset.yml +0 -173
- data/spec/fixtures/vcr_cassettes/Bolognese_Datacite/insert_alternate_identifiers/insert.yml +0 -173
- data/spec/fixtures/vcr_cassettes/Bolognese_Datacite/insert_contributors/insert.yml +0 -173
- data/spec/fixtures/vcr_cassettes/Bolognese_Datacite/insert_contributors/none.yml +0 -173
- data/spec/fixtures/vcr_cassettes/Bolognese_Datacite/insert_creators/insert.yml +0 -173
- data/spec/fixtures/vcr_cassettes/Bolognese_Datacite/insert_dates/insert.yml +0 -173
- data/spec/fixtures/vcr_cassettes/Bolognese_Datacite/insert_descriptions/insert.yml +0 -155
- data/spec/fixtures/vcr_cassettes/Bolognese_Datacite/insert_identifier/doi.yml +0 -173
- data/spec/fixtures/vcr_cassettes/Bolognese_Datacite/insert_person/creator.yml +0 -173
- data/spec/fixtures/vcr_cassettes/Bolognese_Datacite/insert_person/creator_given_and_family_name.yml +0 -173
- data/spec/fixtures/vcr_cassettes/Bolognese_Datacite/insert_person/creator_only_name.yml +0 -173
- data/spec/fixtures/vcr_cassettes/Bolognese_Datacite/insert_publication_year/insert.yml +0 -173
- data/spec/fixtures/vcr_cassettes/Bolognese_Datacite/insert_publisher/insert.yml +0 -173
- data/spec/fixtures/vcr_cassettes/Bolognese_Datacite/insert_related_identifiers/get_related_identifier_type.yml +0 -173
- data/spec/fixtures/vcr_cassettes/Bolognese_Datacite/insert_related_identifiers/get_related_identifier_type_DOI.yml +0 -173
- data/spec/fixtures/vcr_cassettes/Bolognese_Datacite/insert_related_identifiers/get_related_identifier_type_URL.yml +0 -173
- data/spec/fixtures/vcr_cassettes/Bolognese_Datacite/insert_related_identifiers/insert.yml +0 -173
- data/spec/fixtures/vcr_cassettes/Bolognese_Datacite/insert_related_identifiers/rel_identifiers.yml +0 -173
- data/spec/fixtures/vcr_cassettes/Bolognese_Datacite/insert_resource_type/insert.yml +0 -173
- data/spec/fixtures/vcr_cassettes/Bolognese_Datacite/insert_rights_list/insert.yml +0 -173
- data/spec/fixtures/vcr_cassettes/Bolognese_Datacite/insert_subjects/insert.yml +0 -173
- data/spec/fixtures/vcr_cassettes/Bolognese_Datacite/insert_titles/doi.yml +0 -173
- data/spec/fixtures/vcr_cassettes/Bolognese_Datacite/insert_titles/insert.yml +0 -173
- data/spec/fixtures/vcr_cassettes/Bolognese_Datacite/insert_version/insert.yml +0 -173
- data/spec/fixtures/vcr_cassettes/Bolognese_Metadata/find_PID_provider/crossref.yml +0 -44
- data/spec/fixtures/vcr_cassettes/Bolognese_Metadata/find_PID_provider/crossref_doi_not_url.yml +0 -44
- data/spec/fixtures/vcr_cassettes/Bolognese_Metadata/find_PID_provider/datacite.yml +0 -44
- data/spec/fixtures/vcr_cassettes/Bolognese_Metadata/find_PID_provider/datacite_doi_http.yml +0 -44
- data/spec/fixtures/vcr_cassettes/Bolognese_Metadata/find_PID_provider/orcid.yml +0 -44
- data/spec/fixtures/vcr_cassettes/Bolognese_SchemaOrg/get_metadata/BlogPosting.yml +0 -632
- data/spec/fixtures/vcr_cassettes/Bolognese_SchemaOrg/get_metadata/not_found_error.yml +0 -93
- data/spec/metadata_spec.rb +0 -41
- data/spec/orcid_spec.rb +0 -23
- data/spec/schema_org_spec.rb +0 -33
- data/spec/spec_helper.rb +0 -88
- data/spec/utils_spec.rb +0 -107
data/lib/bolognese/utils.rb
CHANGED
|
@@ -1,23 +1,634 @@
|
|
|
1
|
+
# frozen_string_literal: true
|
|
2
|
+
|
|
1
3
|
module Bolognese
|
|
2
4
|
module Utils
|
|
3
|
-
|
|
4
|
-
|
|
5
|
-
|
|
5
|
+
class << self
|
|
6
|
+
include Utils
|
|
7
|
+
end
|
|
6
8
|
|
|
7
|
-
|
|
8
|
-
"
|
|
9
|
+
NORMALIZED_LICENSES = {
|
|
10
|
+
"https://creativecommons.org/licenses/by/1.0" => "https://creativecommons.org/licenses/by/1.0/legalcode",
|
|
11
|
+
"https://creativecommons.org/licenses/by/2.0" => "https://creativecommons.org/licenses/by/2.0/legalcode",
|
|
12
|
+
"https://creativecommons.org/licenses/by/2.5" => "https://creativecommons.org/licenses/by/2.5/legalcode",
|
|
13
|
+
"https://creativecommons.org/licenses/by/3.0" => "https://creativecommons.org/licenses/by/3.0/legalcode",
|
|
14
|
+
"https://creativecommons.org/licenses/by/3.0/us" => "https://creativecommons.org/licenses/by/3.0/legalcode",
|
|
15
|
+
"https://creativecommons.org/licenses/by/4.0" => "https://creativecommons.org/licenses/by/4.0/legalcode",
|
|
16
|
+
"https://creativecommons.org/licenses/by-nc/1.0" => "https://creativecommons.org/licenses/by-nc/1.0/legalcode",
|
|
17
|
+
"https://creativecommons.org/licenses/by-nc/2.0" => "https://creativecommons.org/licenses/by-nc/2.0/legalcode",
|
|
18
|
+
"https://creativecommons.org/licenses/by-nc/2.5" => "https://creativecommons.org/licenses/by-nc/2.5/legalcode",
|
|
19
|
+
"https://creativecommons.org/licenses/by-nc/3.0" => "https://creativecommons.org/licenses/by-nc/3.0/legalcode",
|
|
20
|
+
"https://creativecommons.org/licenses/by-nc/4.0" => "https://creativecommons.org/licenses/by-nc/4.0/legalcode",
|
|
21
|
+
"https://creativecommons.org/licenses/by-nd-nc/1.0" => "https://creativecommons.org/licenses/by-nd-nc/1.0/legalcode",
|
|
22
|
+
"https://creativecommons.org/licenses/by-nd-nc/2.0" => "https://creativecommons.org/licenses/by-nd-nc/2.0/legalcode",
|
|
23
|
+
"https://creativecommons.org/licenses/by-nd-nc/2.5" => "https://creativecommons.org/licenses/by-nd-nc/2.5/legalcode",
|
|
24
|
+
"https://creativecommons.org/licenses/by-nd-nc/3.0" => "https://creativecommons.org/licenses/by-nd-nc/3.0/legalcode",
|
|
25
|
+
"https://creativecommons.org/licenses/by-nd-nc/4.0" => "https://creativecommons.org/licenses/by-nd-nc/4.0/legalcode",
|
|
26
|
+
"https://creativecommons.org/licenses/by-nc-sa/1.0" => "https://creativecommons.org/licenses/by-nc-sa/1.0/legalcode",
|
|
27
|
+
"https://creativecommons.org/licenses/by-nc-sa/2.0" => "https://creativecommons.org/licenses/by-nc-sa/2.0/legalcode",
|
|
28
|
+
"https://creativecommons.org/licenses/by-nc-sa/2.5" => "https://creativecommons.org/licenses/by-nc-sa/2.5/legalcode",
|
|
29
|
+
"https://creativecommons.org/licenses/by-nc-sa/3.0" => "https://creativecommons.org/licenses/by-nc-sa/3.0/legalcode",
|
|
30
|
+
"https://creativecommons.org/licenses/by-nc-sa/4.0" => "https://creativecommons.org/licenses/by-nc-sa/4.0/legalcode",
|
|
31
|
+
"https://creativecommons.org/licenses/by-nd/1.0" => "https://creativecommons.org/licenses/by-nd/1.0/legalcode",
|
|
32
|
+
"https://creativecommons.org/licenses/by-nd/2.0" => "https://creativecommons.org/licenses/by-nd/2.0/legalcode",
|
|
33
|
+
"https://creativecommons.org/licenses/by-nd/2.5" => "https://creativecommons.org/licenses/by-nd/2.5/legalcode",
|
|
34
|
+
"https://creativecommons.org/licenses/by-nd/3.0" => "https://creativecommons.org/licenses/by-nd/3.0/legalcode",
|
|
35
|
+
"https://creativecommons.org/licenses/by-nd/4.0" => "https://creativecommons.org/licenses/by-nd/4.0/legalcode",
|
|
36
|
+
"https://creativecommons.org/licenses/by-sa/1.0" => "https://creativecommons.org/licenses/by-sa/1.0/legalcode",
|
|
37
|
+
"https://creativecommons.org/licenses/by-sa/2.0" => "https://creativecommons.org/licenses/by-sa/2.0/legalcode",
|
|
38
|
+
"https://creativecommons.org/licenses/by-sa/2.5" => "https://creativecommons.org/licenses/by-sa/2.5/legalcode",
|
|
39
|
+
"https://creativecommons.org/licenses/by-sa/3.0" => "https://creativecommons.org/licenses/by-sa/3.0/legalcode",
|
|
40
|
+
"https://creativecommons.org/licenses/by-sa/4.0" => "https://creativecommons.org/licenses/by-sa/4.0/legalcode",
|
|
41
|
+
"https://creativecommons.org/licenses/by-nc-nd/1.0" => "https://creativecommons.org/licenses/by-nc-nd/1.0/legalcode",
|
|
42
|
+
"https://creativecommons.org/licenses/by-nc-nd/2.0" => "https://creativecommons.org/licenses/by-nc-nd/2.0/legalcode",
|
|
43
|
+
"https://creativecommons.org/licenses/by-nc-nd/2.5" => "https://creativecommons.org/licenses/by-nc-nd/2.5/legalcode",
|
|
44
|
+
"https://creativecommons.org/licenses/by-nc-nd/3.0" => "https://creativecommons.org/licenses/by-nc-nd/3.0/legalcode",
|
|
45
|
+
"https://creativecommons.org/licenses/by-nc-nd/4.0" => "https://creativecommons.org/licenses/by-nc-nd/4.0/legalcode",
|
|
46
|
+
"https://creativecommons.org/licenses/publicdomain" => "https://creativecommons.org/licenses/publicdomain/",
|
|
47
|
+
"https://creativecommons.org/publicdomain/zero/1.0" => "https://creativecommons.org/publicdomain/zero/1.0/legalcode",
|
|
48
|
+
}
|
|
49
|
+
|
|
50
|
+
DC_TO_SO_TRANSLATIONS = {
|
|
51
|
+
"Audiovisual" => "MediaObject",
|
|
52
|
+
"Book" => "Book",
|
|
53
|
+
"BookChapter" => "Chapter",
|
|
54
|
+
"Collection" => "Collection",
|
|
55
|
+
"ComputationalNotebook" => "SoftwareSourceCode",
|
|
56
|
+
"ConferencePaper" => "Article",
|
|
57
|
+
"ConferenceProceeding" => "Periodical",
|
|
58
|
+
"DataPaper" => "Article",
|
|
59
|
+
"Dataset" => "Dataset",
|
|
60
|
+
"Dissertation" => "Thesis",
|
|
61
|
+
"Event" => "Event",
|
|
62
|
+
"Image" => "ImageObject",
|
|
63
|
+
"InteractiveResource" => nil,
|
|
64
|
+
"Journal" => "Periodical",
|
|
65
|
+
"JournalArticle" => "ScholarlyArticle",
|
|
66
|
+
"Model" => nil,
|
|
67
|
+
"OutputManagementPlan" => nil,
|
|
68
|
+
"PeerReview" => "Review",
|
|
69
|
+
"PhysicalObject" => nil,
|
|
70
|
+
"Poster" => "Poster",
|
|
71
|
+
"Preprint" => nil,
|
|
72
|
+
"Presentation" => "PresentationDigitalDocument",
|
|
73
|
+
"Report" => "Report",
|
|
74
|
+
"Service" => "Service",
|
|
75
|
+
"Software" => "SoftwareSourceCode",
|
|
76
|
+
"Sound" => "AudioObject",
|
|
77
|
+
"Standard" => nil,
|
|
78
|
+
"Text" => "ScholarlyArticle",
|
|
79
|
+
"Workflow" => nil,
|
|
80
|
+
"Other" => "CreativeWork",
|
|
81
|
+
# not part of DataCite schema, but used internally
|
|
82
|
+
"Periodical" => "Periodical",
|
|
83
|
+
"DataCatalog" => "DataCatalog",
|
|
84
|
+
"Award" => "Grant",
|
|
85
|
+
"Project" => "Project"
|
|
86
|
+
}
|
|
87
|
+
|
|
88
|
+
DC_TO_CP_TRANSLATIONS = {
|
|
89
|
+
"Audiovisual" => "motion_picture",
|
|
90
|
+
"Book" => "book",
|
|
91
|
+
"BookChapter" => "chapter",
|
|
92
|
+
"Collection" => nil,
|
|
93
|
+
"ComputationalNotebook" => nil,
|
|
94
|
+
"ConferencePaper" => "paper_conference",
|
|
95
|
+
"ConferenceProceeding" => nil,
|
|
96
|
+
"DataPaper" => "report",
|
|
97
|
+
"Dataset" => "dataset",
|
|
98
|
+
"Dissertation" => nil,
|
|
99
|
+
"Event" => nil,
|
|
100
|
+
"Image" => "graphic",
|
|
101
|
+
"InteractiveResource" => nil,
|
|
102
|
+
"Journal" => nil,
|
|
103
|
+
"JournalArticle" => "article-journal",
|
|
104
|
+
"Model" => nil,
|
|
105
|
+
"OutputManagementPlan" => nil,
|
|
106
|
+
"PeerReview" => "review",
|
|
107
|
+
"PhysicalObject" => nil,
|
|
108
|
+
"Poster" => "document",
|
|
109
|
+
"Preprint" => nil,
|
|
110
|
+
"Presentation" => "presentation",
|
|
111
|
+
"Report" => "report",
|
|
112
|
+
"Service" => nil,
|
|
113
|
+
"Sound" => "song",
|
|
114
|
+
"Standard" => nil,
|
|
115
|
+
"Text" => "report",
|
|
116
|
+
"Workflow" => nil,
|
|
117
|
+
"Other" => nil
|
|
118
|
+
}
|
|
119
|
+
|
|
120
|
+
CR_TO_CP_TRANSLATIONS = {
|
|
121
|
+
"Proceedings" => nil,
|
|
122
|
+
"ReferenceBook" => nil,
|
|
123
|
+
"JournalIssue" => nil,
|
|
124
|
+
"ProceedingsArticle" => "paper-conference",
|
|
125
|
+
"Other" => nil,
|
|
126
|
+
"Dissertation" => "thesis",
|
|
127
|
+
"Dataset" => "dataset",
|
|
128
|
+
"EditedBook" => "book",
|
|
129
|
+
"JournalArticle" => "article-journal",
|
|
130
|
+
"Journal" => nil,
|
|
131
|
+
"Report" => "report",
|
|
132
|
+
"BookSeries" => nil,
|
|
133
|
+
"ReportSeries" => nil,
|
|
134
|
+
"BookTrack" => nil,
|
|
135
|
+
"Standard" => nil,
|
|
136
|
+
"BookSection" => "chapter",
|
|
137
|
+
"BookPart" => nil,
|
|
138
|
+
"Book" => "book",
|
|
139
|
+
"BookChapter" => "chapter",
|
|
140
|
+
"StandardSeries" => nil,
|
|
141
|
+
"Monograph" => "book",
|
|
142
|
+
"Component" => nil,
|
|
143
|
+
"ReferenceEntry" => "entry-dictionary",
|
|
144
|
+
"JournalVolume" => nil,
|
|
145
|
+
"BookSet" => nil
|
|
146
|
+
}
|
|
147
|
+
|
|
148
|
+
CR_TO_SO_TRANSLATIONS = {
|
|
149
|
+
"Proceedings" => nil,
|
|
150
|
+
"ReferenceBook" => "Book",
|
|
151
|
+
"JournalIssue" => "PublicationIssue",
|
|
152
|
+
"ProceedingsArticle" => nil,
|
|
153
|
+
"Other" => "CreativeWork",
|
|
154
|
+
"Dissertation" => "Thesis",
|
|
155
|
+
"Dataset" => "Dataset",
|
|
156
|
+
"EditedBook" => "Book",
|
|
157
|
+
"JournalArticle" => "ScholarlyArticle",
|
|
158
|
+
"Journal" => nil,
|
|
159
|
+
"Report" => "Report",
|
|
160
|
+
"BookSeries" => nil,
|
|
161
|
+
"ReportSeries" => nil,
|
|
162
|
+
"BookTrack" => nil,
|
|
163
|
+
"Standard" => nil,
|
|
164
|
+
"BookSection" => nil,
|
|
165
|
+
"BookPart" => nil,
|
|
166
|
+
"Book" => "Book",
|
|
167
|
+
"BookChapter" => "Chapter",
|
|
168
|
+
"StandardSeries" => nil,
|
|
169
|
+
"Monograph" => "Book",
|
|
170
|
+
"Component" => "CreativeWork",
|
|
171
|
+
"ReferenceEntry" => nil,
|
|
172
|
+
"JournalVolume" => "PublicationVolume",
|
|
173
|
+
"BookSet" => nil,
|
|
174
|
+
"PostedContent" => "ScholarlyArticle",
|
|
175
|
+
"PeerReview" => "Review"
|
|
176
|
+
}
|
|
177
|
+
|
|
178
|
+
CR_TO_BIB_TRANSLATIONS = {
|
|
179
|
+
"Proceedings" => "proceedings",
|
|
180
|
+
"ReferenceBook" => "book",
|
|
181
|
+
"JournalIssue" => nil,
|
|
182
|
+
"ProceedingsArticle" => nil,
|
|
183
|
+
"Other" => nil,
|
|
184
|
+
"Dissertation" => "phdthesis",
|
|
185
|
+
"Dataset" => nil,
|
|
186
|
+
"EditedBook" => "book",
|
|
187
|
+
"JournalArticle" => "article",
|
|
188
|
+
"Journal" => nil,
|
|
189
|
+
"Report" => "techreport",
|
|
190
|
+
"BookSeries" => nil,
|
|
191
|
+
"ReportSeries" => nil,
|
|
192
|
+
"BookTrack" => nil,
|
|
193
|
+
"Standard" => nil,
|
|
194
|
+
"BookSection" => "inbook",
|
|
195
|
+
"BookPart" => nil,
|
|
196
|
+
"Book" => "book",
|
|
197
|
+
"BookChapter" => "inbook",
|
|
198
|
+
"StandardSeries" => nil,
|
|
199
|
+
"Monograph" => "book",
|
|
200
|
+
"Component" => nil,
|
|
201
|
+
"ReferenceEntry" => nil,
|
|
202
|
+
"JournalVolume" => nil,
|
|
203
|
+
"BookSet" => nil,
|
|
204
|
+
"PostedContent" => "article"
|
|
205
|
+
}
|
|
206
|
+
|
|
207
|
+
BIB_TO_CR_TRANSLATIONS = {
|
|
208
|
+
"proceedings" => "Proceedings",
|
|
209
|
+
"phdthesis" => "Dissertation",
|
|
210
|
+
"article" => "JournalArticle",
|
|
211
|
+
"book" => "Book",
|
|
212
|
+
"inbook" => "BookChapter"
|
|
213
|
+
}
|
|
214
|
+
|
|
215
|
+
CR_TO_JATS_TRANSLATIONS = {
|
|
216
|
+
"Proceedings" => "working-paper",
|
|
217
|
+
"ReferenceBook" => "book",
|
|
218
|
+
"JournalIssue" => "journal",
|
|
219
|
+
"ProceedingsArticle" => "working-paper",
|
|
220
|
+
"Other" => nil,
|
|
221
|
+
"Dissertation" => nil,
|
|
222
|
+
"Dataset" => "data",
|
|
223
|
+
"EditedBook" => "book",
|
|
224
|
+
"JournalArticle" => "journal",
|
|
225
|
+
"Journal" => "journal",
|
|
226
|
+
"Report" => "report",
|
|
227
|
+
"BookSeries" => "book",
|
|
228
|
+
"ReportSeries" => "report",
|
|
229
|
+
"BookTrack" => "book",
|
|
230
|
+
"Standard" => "standard",
|
|
231
|
+
"BookSection" => "chapter",
|
|
232
|
+
"BookPart" => "chapter",
|
|
233
|
+
"Book" => "book",
|
|
234
|
+
"BookChapter" => "chapter",
|
|
235
|
+
"StandardSeries" => "standard",
|
|
236
|
+
"Monograph" => "book",
|
|
237
|
+
"Component" => nil,
|
|
238
|
+
"ReferenceEntry" => nil,
|
|
239
|
+
"JournalVolume" => "journal",
|
|
240
|
+
"BookSet" => "book"
|
|
241
|
+
}
|
|
242
|
+
|
|
243
|
+
CR_TO_DC_TRANSLATIONS = {
|
|
244
|
+
"Proceedings" => nil,
|
|
245
|
+
"ReferenceBook" => nil,
|
|
246
|
+
"JournalIssue" => "Text",
|
|
247
|
+
"ProceedingsArticle" => "ConferencePaper",
|
|
248
|
+
"Other" => "Other",
|
|
249
|
+
"Dissertation" => "Dissertation",
|
|
250
|
+
"Dataset" => "Dataset",
|
|
251
|
+
"EditedBook" => "Book",
|
|
252
|
+
"JournalArticle" => "JournalArticle",
|
|
253
|
+
"Journal" => "Journal",
|
|
254
|
+
"Report" => "Report",
|
|
255
|
+
"BookSeries" => nil,
|
|
256
|
+
"ReportSeries" => nil,
|
|
257
|
+
"BookTrack" => nil,
|
|
258
|
+
"Standard" => "Standard",
|
|
259
|
+
"BookSection" => "BookChapter",
|
|
260
|
+
"BookPart" => nil,
|
|
261
|
+
"Book" => "Book",
|
|
262
|
+
"BookChapter" => "BookChapter",
|
|
263
|
+
"SaComponent" => "Text",
|
|
264
|
+
"StandardSeries" => "Standard",
|
|
265
|
+
"Monograph" => "book",
|
|
266
|
+
"Component" => nil,
|
|
267
|
+
"ReferenceEntry" => nil,
|
|
268
|
+
"JournalVolume" => nil,
|
|
269
|
+
"BookSet" => nil,
|
|
270
|
+
"PostedContent" => "JournalArticle",
|
|
271
|
+
"PeerReview" => "PeerReview"
|
|
272
|
+
}
|
|
273
|
+
|
|
274
|
+
SO_TO_DC_TRANSLATIONS = {
|
|
275
|
+
"Article" => "Text",
|
|
276
|
+
"AudioObject" => "Sound",
|
|
277
|
+
"Blog" => "Text",
|
|
278
|
+
"BlogPosting" => "Text",
|
|
279
|
+
"Book" => "Book",
|
|
280
|
+
"Chapter" => "BookChapter",
|
|
281
|
+
"Collection" => "Collection",
|
|
282
|
+
"DataCatalog" => "Dataset",
|
|
283
|
+
"Dataset" => "Dataset",
|
|
284
|
+
"Event" => "Event",
|
|
285
|
+
"ImageObject" => "Image",
|
|
286
|
+
"Movie" => "Audiovisual",
|
|
287
|
+
"Poster" => "Poster",
|
|
288
|
+
"PresentationDigitalDocument" => "Presentation",
|
|
289
|
+
"PublicationIssue" => "Text",
|
|
290
|
+
"Report" => "Report",
|
|
291
|
+
"ScholarlyArticle" => "Text",
|
|
292
|
+
"Thesis" => "Text",
|
|
293
|
+
"Service" => "Service",
|
|
294
|
+
"Review" => "PeerReview",
|
|
295
|
+
"SoftwareSourceCode" => "Software",
|
|
296
|
+
"VideoObject" => "Audiovisual",
|
|
297
|
+
"WebPage" => "Text",
|
|
298
|
+
"WebSite" => "Text"
|
|
299
|
+
}
|
|
300
|
+
|
|
301
|
+
SO_TO_JATS_TRANSLATIONS = {
|
|
302
|
+
"Article" => "journal",
|
|
303
|
+
"AudioObject" => nil,
|
|
304
|
+
"Blog" => nil,
|
|
305
|
+
"BlogPosting" => nil,
|
|
306
|
+
"Book" => "book",
|
|
307
|
+
"Collection" => nil,
|
|
308
|
+
"CreativeWork" => nil,
|
|
309
|
+
"DataCatalog" => "data",
|
|
310
|
+
"Dataset" => "data",
|
|
311
|
+
"Event" => nil,
|
|
312
|
+
"ImageObject" => nil,
|
|
313
|
+
"Movie" => nil,
|
|
314
|
+
"PublicationIssue" => "journal",
|
|
315
|
+
"ScholarlyArticle" => "journal",
|
|
316
|
+
"Service" => nil,
|
|
317
|
+
"SoftwareSourceCode" => "software",
|
|
318
|
+
"VideoObject" => nil,
|
|
319
|
+
"WebPage" => nil,
|
|
320
|
+
"WebSite" => "website"
|
|
321
|
+
}
|
|
322
|
+
|
|
323
|
+
SO_TO_CP_TRANSLATIONS = {
|
|
324
|
+
"Article" => "",
|
|
325
|
+
"AudioObject" => "song",
|
|
326
|
+
"Blog" => "report",
|
|
327
|
+
"BlogPosting" => "post-weblog",
|
|
328
|
+
"Collection" => nil,
|
|
329
|
+
"CreativeWork" => nil,
|
|
330
|
+
"DataCatalog" => "dataset",
|
|
331
|
+
"Dataset" => "dataset",
|
|
332
|
+
"Event" => nil,
|
|
333
|
+
"ImageObject" => "graphic",
|
|
334
|
+
"Movie" => "motion_picture",
|
|
335
|
+
"Poster" => "document",
|
|
336
|
+
"PresentationDigitalDocument" => "presentation",
|
|
337
|
+
"PublicationIssue" => nil,
|
|
338
|
+
"Report" => "report",
|
|
339
|
+
"ScholarlyArticle" => "article-journal",
|
|
340
|
+
"Service" => nil,
|
|
341
|
+
"Thesis" => "thesis",
|
|
342
|
+
"VideoObject" => "broadcast",
|
|
343
|
+
"WebPage" => "webpage",
|
|
344
|
+
"WebSite" => "webpage"
|
|
345
|
+
}
|
|
346
|
+
|
|
347
|
+
SO_TO_RIS_TRANSLATIONS = {
|
|
348
|
+
"Article" => nil,
|
|
349
|
+
"AudioObject" => nil,
|
|
350
|
+
"Blog" => nil,
|
|
351
|
+
"BlogPosting" => "BLOG",
|
|
352
|
+
"Collection" => nil,
|
|
353
|
+
"CreativeWork" => "GEN",
|
|
354
|
+
"DataCatalog" => "CTLG",
|
|
355
|
+
"Dataset" => "DATA",
|
|
356
|
+
"Event" => nil,
|
|
357
|
+
"ImageObject" => "FIGURE",
|
|
358
|
+
"Movie" => "MPCT",
|
|
359
|
+
"Poster" => "GEN",
|
|
360
|
+
"PresentationDigitalDocument" => "SLIDE",
|
|
361
|
+
"PublicationIssue" => nil,
|
|
362
|
+
"Report" => "RPRT",
|
|
363
|
+
"ScholarlyArticle" => "JOUR",
|
|
364
|
+
"Service" => nil,
|
|
365
|
+
"SoftwareSourceCode" => "COMP",
|
|
366
|
+
"VideoObject" => "VIDEO",
|
|
367
|
+
"WebPage" => "ELEC",
|
|
368
|
+
"WebSite" => nil
|
|
369
|
+
}
|
|
370
|
+
|
|
371
|
+
CR_TO_RIS_TRANSLATIONS = {
|
|
372
|
+
"Proceedings" => "CONF",
|
|
373
|
+
"ReferenceBook" => "BOOK",
|
|
374
|
+
"JournalIssue" => nil,
|
|
375
|
+
"ProceedingsArticle" => "CPAPER",
|
|
376
|
+
"Other" => "GEN",
|
|
377
|
+
"Dissertation" => "THES",
|
|
378
|
+
"Dataset" => "DATA",
|
|
379
|
+
"EditedBook" => "BOOK",
|
|
380
|
+
"JournalArticle" => "JOUR",
|
|
381
|
+
"Journal" => nil,
|
|
382
|
+
"Report" => "RPRT",
|
|
383
|
+
"BookSeries" => nil,
|
|
384
|
+
"ReportSeries" => nil,
|
|
385
|
+
"BookTrack" => nil,
|
|
386
|
+
"Standard" => "STAND",
|
|
387
|
+
"BookSection" => "CHAP",
|
|
388
|
+
"BookPart" => "CHAP",
|
|
389
|
+
"Book" => "BOOK",
|
|
390
|
+
"BookChapter" => "CHAP",
|
|
391
|
+
"StandardSeries" => nil,
|
|
392
|
+
"Monograph" => "BOOK",
|
|
393
|
+
"Component" => nil,
|
|
394
|
+
"ReferenceEntry" => "DICT",
|
|
395
|
+
"JournalVolume" => nil,
|
|
396
|
+
"BookSet" => nil
|
|
397
|
+
}
|
|
398
|
+
|
|
399
|
+
DC_TO_RIS_TRANSLATIONS = {
|
|
400
|
+
"Audiovisual" => "MPCT",
|
|
401
|
+
"Book" => "BOOK",
|
|
402
|
+
"BookChapter" => "CHAP",
|
|
403
|
+
"Collection" => nil,
|
|
404
|
+
"ComputationalNotebook" => "COMP",
|
|
405
|
+
"ConferencePaper" => "CPAPER",
|
|
406
|
+
"ConferenceProceeding" => "CONF",
|
|
407
|
+
"DataPaper" => nil,
|
|
408
|
+
"Dataset" => "DATA",
|
|
409
|
+
"Dissertation" => "THES",
|
|
410
|
+
"Event" => nil,
|
|
411
|
+
"Image" => "FIGURE",
|
|
412
|
+
"InteractiveResource" => nil,
|
|
413
|
+
"Journal" => nil,
|
|
414
|
+
"JournalArticle" => "JOUR",
|
|
415
|
+
"Model" => nil,
|
|
416
|
+
"OutputManagementPlan" => nil,
|
|
417
|
+
"PeerReview" => nil,
|
|
418
|
+
"PhysicalObject" => nil,
|
|
419
|
+
"Poster" => "GEN",
|
|
420
|
+
"Preprint" => nil,
|
|
421
|
+
"Presentation" => "SLIDE",
|
|
422
|
+
"Report" => "RRPT",
|
|
423
|
+
"Service" => nil,
|
|
424
|
+
"Software" => "COMP",
|
|
425
|
+
"Sound" => "SOUND",
|
|
426
|
+
"Standard" => nil,
|
|
427
|
+
"Text" => "RPRT",
|
|
428
|
+
"Workflow" => nil,
|
|
429
|
+
"Other" => nil
|
|
430
|
+
}
|
|
431
|
+
|
|
432
|
+
RIS_TO_DC_TRANSLATIONS = {
|
|
433
|
+
"BLOG" => "Text",
|
|
434
|
+
"GEN" => "Poster",
|
|
435
|
+
"CTLG" => "Collection",
|
|
436
|
+
"DATA" => "Dataset",
|
|
437
|
+
"FIGURE" => "Image",
|
|
438
|
+
"THES" => "Dissertation",
|
|
439
|
+
"MPCT" => "Audiovisual",
|
|
440
|
+
"JOUR" => "JournalArticle",
|
|
441
|
+
"COMP" => "Software",
|
|
442
|
+
"VIDEO" => "Audiovisual",
|
|
443
|
+
"ELEC" => "Text",
|
|
444
|
+
"SLIDE" => "Presentation"
|
|
445
|
+
}
|
|
446
|
+
|
|
447
|
+
BIB_TO_DC_TRANSLATIONS = {
|
|
448
|
+
"article" => "JournalArticle",
|
|
449
|
+
"book" => "Book",
|
|
450
|
+
"inbook" => "BookChapter",
|
|
451
|
+
"inproceedings" => nil,
|
|
452
|
+
"manual" => nil,
|
|
453
|
+
"misc" => "Other",
|
|
454
|
+
"phdthesis" => "Dissertation",
|
|
455
|
+
"proceedings" => "ConferenceProceeding",
|
|
456
|
+
"techreport" => "Report",
|
|
457
|
+
"unpublished" => nil
|
|
458
|
+
}
|
|
459
|
+
|
|
460
|
+
CP_TO_DC_TRANSLATIONS = {
|
|
461
|
+
"song" => "Audiovisual",
|
|
462
|
+
"post-weblog" => "Text",
|
|
463
|
+
"dataset" => "Dataset",
|
|
464
|
+
"graphic" => "Image",
|
|
465
|
+
"motion_picture" => "Audiovisual",
|
|
466
|
+
"article-journal" => "JournalArticle",
|
|
467
|
+
"broadcast" => "Audiovisual",
|
|
468
|
+
"webpage" => "Text",
|
|
469
|
+
"document" => "Poster",
|
|
470
|
+
"presentation" => "Presentation"
|
|
471
|
+
}
|
|
472
|
+
|
|
473
|
+
SO_TO_BIB_TRANSLATIONS = {
|
|
474
|
+
"Article" => "article",
|
|
475
|
+
"AudioObject" => "misc",
|
|
476
|
+
"Thesis" => "phdthesis",
|
|
477
|
+
"Blog" => "misc",
|
|
478
|
+
"BlogPosting" => "article",
|
|
479
|
+
"Collection" => "misc",
|
|
480
|
+
"CreativeWork" => "misc",
|
|
481
|
+
"DataCatalog" => "misc",
|
|
482
|
+
"Dataset" => "misc",
|
|
483
|
+
"Event" => "misc",
|
|
484
|
+
"ImageObject" => "misc",
|
|
485
|
+
"Movie" => "misc",
|
|
486
|
+
"Poster" => "misc",
|
|
487
|
+
"PresentationDigitalDocument" => "misc",
|
|
488
|
+
"PublicationIssue" => "misc",
|
|
489
|
+
"ScholarlyArticle" => "article",
|
|
490
|
+
"Service" => "misc",
|
|
491
|
+
"SoftwareSourceCode" => "misc",
|
|
492
|
+
"VideoObject" => "misc",
|
|
493
|
+
"WebPage" => "misc",
|
|
494
|
+
"WebSite" => "misc"
|
|
495
|
+
}
|
|
496
|
+
|
|
497
|
+
UNKNOWN_INFORMATION = {
|
|
498
|
+
":unac" => "temporarily inaccessible",
|
|
499
|
+
":unal" => "unallowed, suppressed intentionally",
|
|
500
|
+
":unap" => "not applicable, makes no sense",
|
|
501
|
+
":unas" => "value unassigned (e.g., Untitled)",
|
|
502
|
+
":unav" => "value unavailable, possibly unknown",
|
|
503
|
+
":unkn" => "known to be unknown (e.g., Anonymous, Inconnue)",
|
|
504
|
+
":none" => "never had a value, never will",
|
|
505
|
+
":null" => "explicitly and meaningfully empty",
|
|
506
|
+
":tba" => "to be assigned or announced later",
|
|
507
|
+
":etal" => "too numerous to list (et alia)"
|
|
508
|
+
}
|
|
509
|
+
|
|
510
|
+
RESOURCE_PATHS = {
|
|
511
|
+
spdx: 'spdx/licenses.json',
|
|
512
|
+
fos: 'oecd/fos-mappings.json',
|
|
513
|
+
for: 'oecd/for-mappings.json',
|
|
514
|
+
dfg: 'oecd/dfg-mappings.json'
|
|
515
|
+
}
|
|
516
|
+
|
|
517
|
+
def resources_dir_path
|
|
518
|
+
File.expand_path('../../../resources', __FILE__) + '/'
|
|
519
|
+
end
|
|
520
|
+
|
|
521
|
+
def resource_file( extra_path )
|
|
522
|
+
File.read(resources_dir_path + extra_path)
|
|
523
|
+
end
|
|
524
|
+
|
|
525
|
+
def resource_json( resource_symbol )
|
|
526
|
+
if RESOURCE_PATHS.keys().include?(resource_symbol)
|
|
527
|
+
JSON.load(resource_file(RESOURCE_PATHS[resource_symbol]))
|
|
528
|
+
end
|
|
529
|
+
end
|
|
530
|
+
|
|
531
|
+
|
|
532
|
+
def find_from_format(id: nil, string: nil, ext: nil, filename: nil)
|
|
533
|
+
if id.present?
|
|
534
|
+
find_from_format_by_id(id)
|
|
535
|
+
elsif ext.present?
|
|
536
|
+
find_from_format_by_filename(filename) || find_from_format_by_ext(string, ext: ext)
|
|
537
|
+
elsif string.present?
|
|
538
|
+
find_from_format_by_string(string)
|
|
539
|
+
else
|
|
540
|
+
"datacite"
|
|
541
|
+
end
|
|
542
|
+
end
|
|
543
|
+
|
|
544
|
+
def find_from_format_by_id(id)
|
|
545
|
+
id = normalize_id(id)
|
|
546
|
+
|
|
547
|
+
if /\A(?:(http|https):\/(\/)?(dx\.)?(doi.org|handle.stage.datacite.org)\/)?(doi:)?(10\.\d{4,5}\/.+)\z/.match(id)
|
|
548
|
+
ra = get_doi_ra(id)
|
|
549
|
+
%w(DataCite Crossref mEDRA KISTI JaLC OP).include?(ra) ? ra.downcase : nil
|
|
550
|
+
elsif /\A(?:(http|https):\/(\/)?orcid\.org\/)?(\d{4}-\d{4}-\d{4}-\d{3}[0-9X]+)\z/.match(id)
|
|
551
|
+
"orcid"
|
|
552
|
+
elsif /\A(http|https):\/(\/)?github\.com\/(.+)\/package.json\z/.match(id)
|
|
553
|
+
"npm"
|
|
554
|
+
elsif /\A(http|https):\/(\/)?github\.com\/(.+)\z/.match(id)
|
|
555
|
+
"codemeta"
|
|
556
|
+
else
|
|
557
|
+
"schema_org"
|
|
558
|
+
end
|
|
559
|
+
end
|
|
560
|
+
|
|
561
|
+
def find_from_format_by_filename(filename)
|
|
562
|
+
if filename == "package.json"
|
|
563
|
+
"npm"
|
|
564
|
+
end
|
|
565
|
+
end
|
|
566
|
+
|
|
567
|
+
def find_from_format_by_ext(string, options={})
|
|
568
|
+
if options[:ext] == ".bib"
|
|
569
|
+
"bibtex"
|
|
570
|
+
elsif options[:ext] == ".ris"
|
|
571
|
+
"ris"
|
|
572
|
+
elsif options[:ext] == ".xml" && Maremma.from_xml(string).to_h.dig("crossref_result", "query_result", "body", "query", "doi_record", "crossref")
|
|
573
|
+
"crossref"
|
|
574
|
+
elsif options[:ext] == ".xml" && Nokogiri::XML(string, nil, 'UTF-8', &:noblanks).collect_namespaces.find { |k, v| v.start_with?("http://datacite.org/schema/kernel") }
|
|
575
|
+
"datacite"
|
|
576
|
+
elsif options[:ext] == ".json" && Maremma.from_json(string).to_h.dig("@context").to_s.start_with?("http://schema.org", "https://schema.org")
|
|
577
|
+
"schema_org"
|
|
578
|
+
elsif options[:ext] == ".json" && Maremma.from_json(string).to_h.dig("@context") == ("https://raw.githubusercontent.com/codemeta/codemeta/master/codemeta.jsonld")
|
|
579
|
+
"codemeta"
|
|
580
|
+
elsif options[:ext] == ".json" && Maremma.from_json(string).to_h.dig("schemaVersion").to_s.start_with?("http://datacite.org/schema/kernel")
|
|
581
|
+
"datacite_json"
|
|
582
|
+
elsif options[:ext] == ".json" && Maremma.from_json(string).to_h.dig("types") && Maremma.from_json(string).to_h.dig("publication_year").present?
|
|
583
|
+
"crosscite"
|
|
584
|
+
elsif options[:ext] == ".json" && Maremma.from_json(string).to_h.dig("issued", "date-parts").present?
|
|
585
|
+
"citeproc"
|
|
586
|
+
end
|
|
587
|
+
end
|
|
588
|
+
|
|
589
|
+
def find_from_format_by_string(string)
|
|
590
|
+
if Maremma.from_xml(string).to_h.dig("crossref_result", "query_result", "body", "query", "doi_record", "crossref").present?
|
|
591
|
+
"crossref"
|
|
592
|
+
elsif Nokogiri::XML(string, nil, 'UTF-8', &:noblanks).collect_namespaces.find { |k, v| v.start_with?("http://datacite.org/schema/kernel") }
|
|
593
|
+
"datacite"
|
|
594
|
+
elsif Maremma.from_json(string).to_h.dig("@context").to_s.start_with?("http://schema.org", "https://schema.org")
|
|
595
|
+
"schema_org"
|
|
596
|
+
elsif Maremma.from_json(string).to_h.dig("@context") == ("https://raw.githubusercontent.com/codemeta/codemeta/master/codemeta.jsonld")
|
|
597
|
+
"codemeta"
|
|
598
|
+
elsif Maremma.from_json(string).to_h.dig("schema-version").to_s.start_with?("http://datacite.org/schema/kernel")
|
|
599
|
+
"datacite_json"
|
|
600
|
+
elsif Maremma.from_json(string).to_h.dig("types").present? && Maremma.from_json(string).to_h.dig("publication_year").present?
|
|
601
|
+
"crosscite"
|
|
602
|
+
elsif Maremma.from_json(string).to_h.dig("issued", "date-parts").present?
|
|
603
|
+
"citeproc"
|
|
604
|
+
elsif string.start_with?("TY - ")
|
|
605
|
+
"ris"
|
|
606
|
+
elsif BibTeX.parse(string).first
|
|
607
|
+
"bibtex"
|
|
608
|
+
end
|
|
609
|
+
rescue BibTeX::ParseError => error
|
|
610
|
+
nil
|
|
9
611
|
end
|
|
10
612
|
|
|
11
613
|
def orcid_from_url(url)
|
|
12
|
-
Array(/\
|
|
614
|
+
Array(/\A:(http|https):\/\/orcid\.org\/(.+)/.match(url)).last
|
|
13
615
|
end
|
|
14
616
|
|
|
15
617
|
def orcid_as_url(orcid)
|
|
16
|
-
"
|
|
618
|
+
"https://orcid.org/#{orcid}" if orcid.present?
|
|
17
619
|
end
|
|
18
620
|
|
|
19
621
|
def validate_orcid(orcid)
|
|
20
|
-
Array(/\A(?:http:\/\/orcid\.org\/)?(\d{4}
|
|
622
|
+
orcid = Array(/\A(?:(?:http|https):\/\/(?:(?:www|sandbox)?\.)?orcid\.org\/)?(\d{4}[[:space:]-]\d{4}[[:space:]-]\d{4}[[:space:]-]\d{3}[0-9X]+)\/{0,1}\z/.match(orcid)).last
|
|
623
|
+
orcid.gsub(/[[:space:]]/, "-") if orcid.present?
|
|
624
|
+
end
|
|
625
|
+
|
|
626
|
+
def validate_ror(ror)
|
|
627
|
+
Array(/^(?:(?:(?:http|https):\/\/)?ror\.org\/)?(0\w{6}\d{2})\/{0,1}$/.match(ror)).last
|
|
628
|
+
end
|
|
629
|
+
|
|
630
|
+
def validate_orcid_scheme(orcid_scheme)
|
|
631
|
+
Array(/\A(http|https):\/\/(www\.)?(orcid\.org)/.match(orcid_scheme)).last
|
|
21
632
|
end
|
|
22
633
|
|
|
23
634
|
def validate_url(str)
|
|
@@ -25,41 +636,868 @@ module Bolognese
|
|
|
25
636
|
"DOI"
|
|
26
637
|
elsif /\A(http|https):\/\//.match(str)
|
|
27
638
|
"URL"
|
|
639
|
+
elsif /\A(ISSN|eISSN) (\d{4}-\d{3}[0-9X]+)\z/.match(str)
|
|
640
|
+
"ISSN"
|
|
28
641
|
end
|
|
29
642
|
end
|
|
30
643
|
|
|
31
|
-
def parse_attributes(element)
|
|
32
|
-
|
|
33
|
-
|
|
644
|
+
def parse_attributes(element, options={})
|
|
645
|
+
content = options[:content] || "__content__"
|
|
646
|
+
|
|
647
|
+
if element.is_a?(String) && options[:content].nil?
|
|
648
|
+
CGI.unescapeHTML(element)
|
|
34
649
|
elsif element.is_a?(Hash)
|
|
35
|
-
element.fetch(
|
|
650
|
+
element.fetch( CGI.unescapeHTML(content), nil)
|
|
36
651
|
elsif element.is_a?(Array)
|
|
37
|
-
element.map { |e| e.fetch(
|
|
652
|
+
a = element.map { |e| e.is_a?(Hash) ? e.fetch(CGI.unescapeHTML(content), nil) : e }.uniq
|
|
653
|
+
a = options[:first] ? a.first : a.unwrap
|
|
38
654
|
else
|
|
39
655
|
nil
|
|
40
656
|
end
|
|
41
657
|
end
|
|
42
658
|
|
|
43
|
-
def
|
|
44
|
-
|
|
45
|
-
|
|
46
|
-
|
|
47
|
-
|
|
48
|
-
|
|
49
|
-
|
|
659
|
+
def normalize_id(id, options={})
|
|
660
|
+
return nil unless id.present?
|
|
661
|
+
|
|
662
|
+
# check for valid DOI
|
|
663
|
+
doi = DoiUtils::normalize_doi(id, options)
|
|
664
|
+
return doi if doi.present?
|
|
665
|
+
|
|
666
|
+
# check for valid HTTP uri
|
|
667
|
+
uri = Addressable::URI.parse(id)
|
|
668
|
+
return nil unless uri && uri.host && %w(http https).include?(uri.scheme)
|
|
669
|
+
|
|
670
|
+
# clean up URL
|
|
671
|
+
normalize_uri_with_path_cleanup(uri)
|
|
672
|
+
rescue Addressable::URI::InvalidURIError
|
|
673
|
+
nil
|
|
674
|
+
end
|
|
675
|
+
|
|
676
|
+
def normalize_url(id, options={})
|
|
677
|
+
return nil unless id.present?
|
|
678
|
+
|
|
679
|
+
# handle info URIs
|
|
680
|
+
return id if id.to_s.start_with?("info")
|
|
681
|
+
|
|
682
|
+
# check for valid HTTP uri
|
|
683
|
+
uri = Addressable::URI.parse(id)
|
|
684
|
+
|
|
685
|
+
return nil unless uri && uri.host && %w(http https ftp).include?(uri.scheme)
|
|
686
|
+
|
|
687
|
+
# optionally turn into https URL
|
|
688
|
+
uri.scheme = "https" if options[:https]
|
|
689
|
+
|
|
690
|
+
# clean up URL
|
|
691
|
+
normalize_uri_with_path_cleanup(uri)
|
|
692
|
+
rescue Addressable::URI::InvalidURIError
|
|
693
|
+
nil
|
|
694
|
+
end
|
|
695
|
+
|
|
696
|
+
def normalize_cc_url(id)
|
|
697
|
+
id = normalize_url(id, https: true)
|
|
698
|
+
NORMALIZED_LICENSES.fetch(id, id)
|
|
699
|
+
end
|
|
700
|
+
|
|
701
|
+
def normalize_orcid(orcid)
|
|
702
|
+
orcid = validate_orcid(orcid)
|
|
703
|
+
return nil unless orcid.present?
|
|
704
|
+
|
|
705
|
+
# turn ORCID ID into URL
|
|
706
|
+
"https://orcid.org/" + Addressable::URI.encode(orcid)
|
|
707
|
+
end
|
|
708
|
+
|
|
709
|
+
def normalize_ror(ror)
|
|
710
|
+
ror = validate_ror(ror)
|
|
711
|
+
return nil unless ror.present?
|
|
712
|
+
|
|
713
|
+
# turn ROR into URL
|
|
714
|
+
"https://ror.org/" + Addressable::URI.encode(ror)
|
|
715
|
+
end
|
|
716
|
+
|
|
717
|
+
def normalize_ids(ids: nil, relation_type: nil)
|
|
718
|
+
Array.wrap(ids).select { |idx| idx["@id"].present? }.map do |idx|
|
|
719
|
+
id = normalize_id(idx["@id"])
|
|
720
|
+
related_identifier_type = DoiUtils::doi_from_url(id).present? ? "DOI" : "URL"
|
|
721
|
+
id = DoiUtils::doi_from_url(id) || id
|
|
722
|
+
|
|
723
|
+
{ "relatedIdentifier" => id,
|
|
724
|
+
"relationType" => relation_type,
|
|
725
|
+
"relatedIdentifierType" => related_identifier_type,
|
|
726
|
+
"resourceTypeGeneral" => Metadata::SO_TO_DC_TRANSLATIONS[idx["@type"]] }.compact
|
|
727
|
+
end.unwrap
|
|
728
|
+
end
|
|
729
|
+
|
|
730
|
+
# pick electronic issn if there are multiple
|
|
731
|
+
# format issn as xxxx-xxxx
|
|
732
|
+
def normalize_issn(input, options={})
|
|
733
|
+
content = options[:content] || "__content__"
|
|
734
|
+
|
|
735
|
+
issn = if input.blank?
|
|
736
|
+
nil
|
|
737
|
+
elsif input.is_a?(String) && options[:content].nil?
|
|
738
|
+
input
|
|
739
|
+
elsif input.is_a?(Hash)
|
|
740
|
+
input.fetch(content, nil)
|
|
741
|
+
elsif input.is_a?(Array)
|
|
742
|
+
a = input.find { |a| a["media_type"] == "electronic" } || input.first
|
|
743
|
+
a.fetch(content, nil)
|
|
744
|
+
end
|
|
745
|
+
|
|
746
|
+
case issn.to_s.length
|
|
747
|
+
when 9
|
|
748
|
+
issn
|
|
749
|
+
when 8
|
|
750
|
+
issn[0..3] + "-" + issn[4..7]
|
|
751
|
+
else
|
|
752
|
+
nil
|
|
753
|
+
end
|
|
754
|
+
end
|
|
755
|
+
|
|
756
|
+
# find Creative Commons or OSI license in licenses array, normalize url and name
|
|
757
|
+
def normalize_licenses(licenses)
|
|
758
|
+
standard_licenses = Array.wrap(licenses).map { |l| URI.parse(l["url"]) }.select { |li| li.host && li.host[/(creativecommons.org|opensource.org)$/] }
|
|
759
|
+
return licenses unless standard_licenses.present?
|
|
760
|
+
|
|
761
|
+
# use HTTPS
|
|
762
|
+
uri.scheme = "https"
|
|
763
|
+
|
|
764
|
+
# use host name without subdomain
|
|
765
|
+
uri.host = Array(/(creativecommons.org|opensource.org)/.match uri.host).last
|
|
766
|
+
|
|
767
|
+
# normalize URLs
|
|
768
|
+
if uri.host == "creativecommons.org"
|
|
769
|
+
uri.path = uri.path.split('/')[0..-2].join("/") if uri.path.split('/').last == "legalcode"
|
|
770
|
+
uri.path << '/' unless uri.path.end_with?('/')
|
|
771
|
+
else
|
|
772
|
+
uri.path = uri.path.gsub(/(-license|\.php|\.html)/, '')
|
|
773
|
+
uri.path = uri.path.sub(/(mit|afl|apl|osl|gpl|ecl)/) { |match| match.upcase }
|
|
774
|
+
uri.path = uri.path.sub(/(artistic|apache)/) { |match| match.titleize }
|
|
775
|
+
uri.path = uri.path.sub(/([^0-9\-]+)(-)?([1-9])?(\.)?([0-9])?$/) do
|
|
776
|
+
m = Regexp.last_match
|
|
777
|
+
text = m[1]
|
|
778
|
+
|
|
779
|
+
if m[3].present?
|
|
780
|
+
version = [m[3], m[5].presence || "0"].join(".")
|
|
781
|
+
[text, version].join("-")
|
|
782
|
+
else
|
|
783
|
+
text
|
|
784
|
+
end
|
|
785
|
+
end
|
|
786
|
+
end
|
|
787
|
+
|
|
788
|
+
uri.to_s
|
|
789
|
+
rescue URI::InvalidURIError
|
|
790
|
+
nil
|
|
791
|
+
end
|
|
792
|
+
|
|
793
|
+
def normalize_publisher(publisher)
|
|
794
|
+
if publisher.respond_to?(:to_hash)
|
|
795
|
+
publisher
|
|
796
|
+
elsif publisher.respond_to?(:to_str)
|
|
797
|
+
{ "name" => publisher }
|
|
798
|
+
end
|
|
799
|
+
end
|
|
800
|
+
|
|
801
|
+
def to_datacite_json(element, options={})
|
|
802
|
+
a = Array.wrap(element).map do |e|
|
|
803
|
+
e.inject({}) {|h, (k,v)| h[k.dasherize] = v; h }
|
|
804
|
+
end
|
|
805
|
+
options[:first] ? a.unwrap : a.presence
|
|
806
|
+
end
|
|
807
|
+
|
|
808
|
+
def from_datacite_json(element)
|
|
809
|
+
Array.wrap(element).map do |e|
|
|
810
|
+
e.inject({}) {|h, (k,v)| h[k.underscore] = v; h }
|
|
811
|
+
end
|
|
812
|
+
end
|
|
813
|
+
|
|
814
|
+
def to_schema_org(element)
|
|
815
|
+
mapping = { "type" => "@type", "id" => "@id", "title" => "name" }
|
|
816
|
+
|
|
817
|
+
map_hash_keys(element: element, mapping: mapping)
|
|
818
|
+
end
|
|
819
|
+
|
|
820
|
+
def to_schema_org_creators(element)
|
|
821
|
+
element = Array.wrap(element).map do |c|
|
|
822
|
+
c["affiliation"] = Array.wrap(c["affiliation"]).map do |a|
|
|
823
|
+
if a.is_a?(String)
|
|
824
|
+
name = a
|
|
825
|
+
affiliation_identifier = nil
|
|
826
|
+
else
|
|
827
|
+
name = a["name"]
|
|
828
|
+
affiliation_identifier = a["affiliationIdentifier"]
|
|
829
|
+
end
|
|
830
|
+
|
|
831
|
+
{
|
|
832
|
+
"@type" => "Organization",
|
|
833
|
+
"@id" => affiliation_identifier,
|
|
834
|
+
"name" => name }.compact
|
|
835
|
+
end.unwrap
|
|
836
|
+
c["@type"] = c["nameType"].present? ? c["nameType"][0..-3] : nil
|
|
837
|
+
c["@id"] = Array.wrap(c["nameIdentifiers"]).first.to_h.fetch("nameIdentifier", nil)
|
|
838
|
+
c["name"] = c["familyName"].present? ? [c["givenName"], c["familyName"]].join(" ") : c["name"]
|
|
839
|
+
c.except("nameIdentifiers", "nameType").compact
|
|
840
|
+
end.unwrap
|
|
841
|
+
end
|
|
842
|
+
|
|
843
|
+
def to_schema_org_contributors(element)
|
|
844
|
+
element = Array.wrap(element).map do |c|
|
|
845
|
+
transformed_c = c.dup
|
|
846
|
+
transformed_c["affiliation"] = Array.wrap(c["affiliation"]).map do |a|
|
|
847
|
+
if a.is_a?(String)
|
|
848
|
+
name = a
|
|
849
|
+
affiliation_identifier = nil
|
|
850
|
+
else
|
|
851
|
+
name = a["name"]
|
|
852
|
+
affiliation_identifier = a["affiliationIdentifier"]
|
|
853
|
+
end
|
|
854
|
+
|
|
855
|
+
{
|
|
856
|
+
"@type" => "Organization",
|
|
857
|
+
"@id" => affiliation_identifier,
|
|
858
|
+
"name" => name }.compact
|
|
859
|
+
end.unwrap
|
|
860
|
+
transformed_c["@type"] = c["nameType"].present? ? c["nameType"][0..-3] : nil
|
|
861
|
+
transformed_c["@id"] = Array.wrap(c["nameIdentifiers"]).first.to_h.fetch("nameIdentifier", nil)
|
|
862
|
+
transformed_c["name"] = c["familyName"].present? ? [c["givenName"], c["familyName"]].join(" ") : c["name"]
|
|
863
|
+
transformed_c.except("nameIdentifiers", "nameType").compact
|
|
864
|
+
end.unwrap
|
|
865
|
+
end
|
|
866
|
+
|
|
867
|
+
def to_schema_org_container(element, options={})
|
|
868
|
+
return nil unless (element.is_a?(Hash) || (element.nil? && options[:container_title].present?))
|
|
869
|
+
|
|
870
|
+
{
|
|
871
|
+
"@id" => element["identifier"],
|
|
872
|
+
"@type" => (options[:type] == "Dataset") ? "DataCatalog" : "Periodical",
|
|
873
|
+
"name" => element["title"] || options[:container_title] }.compact
|
|
874
|
+
end
|
|
875
|
+
|
|
876
|
+
def to_schema_org_identifiers(element, options={})
|
|
877
|
+
Array.wrap(element).map do |ai|
|
|
878
|
+
{
|
|
879
|
+
"@type" => "PropertyValue",
|
|
880
|
+
"propertyID" => ai["identifierType"],
|
|
881
|
+
"value" => ai["identifier"] }
|
|
882
|
+
end.unwrap
|
|
883
|
+
end
|
|
884
|
+
|
|
885
|
+
def to_schema_org_relation(related_identifiers: nil, relation_type: nil)
|
|
886
|
+
return nil unless related_identifiers.present? && relation_type.present?
|
|
887
|
+
|
|
888
|
+
relation_type = relation_type == "References" ? ["References", "Cites", "Documents"] : [relation_type]
|
|
889
|
+
|
|
890
|
+
Array.wrap(related_identifiers).select { |ri| relation_type.include?(ri["relationType"]) }.map do |r|
|
|
891
|
+
if r["relatedIdentifierType"] == "ISSN" && r["relationType"] == "IsPartOf"
|
|
892
|
+
{
|
|
893
|
+
"@type" => "Periodical",
|
|
894
|
+
"issn" => r["relatedIdentifier"] }.compact
|
|
895
|
+
else
|
|
896
|
+
{
|
|
897
|
+
"@id" => normalize_id(r["relatedIdentifier"]),
|
|
898
|
+
"@type" => DC_TO_SO_TRANSLATIONS[r["resourceTypeGeneral"]] || "CreativeWork" }.compact
|
|
899
|
+
end
|
|
900
|
+
end.unwrap
|
|
901
|
+
end
|
|
902
|
+
|
|
903
|
+
def to_schema_org_funder(funding_references)
|
|
904
|
+
return nil unless funding_references.present?
|
|
905
|
+
|
|
906
|
+
Array.wrap(funding_references).map do |fr|
|
|
907
|
+
{
|
|
908
|
+
"@id" => fr["funderIdentifier"],
|
|
909
|
+
"@type" => "Organization",
|
|
910
|
+
"name" => fr["funderName"] }.compact
|
|
911
|
+
end.unwrap
|
|
912
|
+
end
|
|
913
|
+
|
|
914
|
+
def to_schema_org_spatial_coverage(geo_location)
|
|
915
|
+
return nil unless geo_location.present?
|
|
916
|
+
|
|
917
|
+
Array.wrap(geo_location).reduce([]) do |sum, gl|
|
|
918
|
+
if gl.fetch("geoLocationPoint", nil)
|
|
919
|
+
sum << {
|
|
920
|
+
"@type" => "Place",
|
|
921
|
+
"geo" => {
|
|
922
|
+
"@type" => "GeoCoordinates",
|
|
923
|
+
"address" => gl["geoLocationPlace"],
|
|
924
|
+
"latitude" => gl.dig("geoLocationPoint", "pointLatitude"),
|
|
925
|
+
"longitude" => gl.dig("geoLocationPoint", "pointLongitude") }
|
|
926
|
+
}.compact
|
|
927
|
+
end
|
|
928
|
+
|
|
929
|
+
if gl.fetch("geoLocationBox", nil)
|
|
930
|
+
sum << {
|
|
931
|
+
"@type" => "Place",
|
|
932
|
+
"geo" => {
|
|
933
|
+
"@type" => "GeoShape",
|
|
934
|
+
"address" => gl["geoLocationPlace"],
|
|
935
|
+
"box" => [gl.dig("geoLocationBox", "southBoundLatitude"),
|
|
936
|
+
gl.dig("geoLocationBox", "westBoundLongitude"),
|
|
937
|
+
gl.dig("geoLocationBox", "northBoundLatitude"),
|
|
938
|
+
gl.dig("geoLocationBox", "eastBoundLongitude")].compact.join(" ").presence }.compact
|
|
939
|
+
}.compact
|
|
940
|
+
end
|
|
941
|
+
|
|
942
|
+
if gl.fetch("geoLocationPolygon", nil)
|
|
943
|
+
sum << {
|
|
944
|
+
"@type" => "Place",
|
|
945
|
+
"geo" => {
|
|
946
|
+
"@type" => "GeoShape",
|
|
947
|
+
"address" => gl["geoLocationPlace"],
|
|
948
|
+
"polygon" => Array.wrap(gl.dig("geoLocationPolygon")).map do |glp|
|
|
949
|
+
Array.wrap(glp).map do |glpp|
|
|
950
|
+
if glpp.dig("polygonPoint")
|
|
951
|
+
[glpp.dig("polygonPoint", "pointLongitude"), glpp.dig("polygonPoint", "pointLatitude")].compact
|
|
952
|
+
end
|
|
953
|
+
end.compact.presence
|
|
954
|
+
end.compact.presence,
|
|
955
|
+
}
|
|
956
|
+
}
|
|
957
|
+
end
|
|
958
|
+
|
|
959
|
+
if gl.fetch("geoLocationPlace", nil) && !gl.fetch("geoLocationPoint", nil) && !gl.fetch("geoLocationBox", nil) && !gl.fetch("geoLocationPolygon", nil)
|
|
960
|
+
sum << {
|
|
961
|
+
"@type" => "Place",
|
|
962
|
+
"geo" => {
|
|
963
|
+
"@type" => "GeoCoordinates",
|
|
964
|
+
"address" => gl["geoLocationPlace"] }
|
|
965
|
+
}.compact
|
|
966
|
+
end
|
|
967
|
+
|
|
968
|
+
sum
|
|
969
|
+
end.unwrap
|
|
970
|
+
end
|
|
971
|
+
|
|
972
|
+
def from_schema_org(element)
|
|
973
|
+
mapping = { "@type" => "type", "@id" => "id" }
|
|
974
|
+
|
|
975
|
+
map_hash_keys(element: element, mapping: mapping)
|
|
976
|
+
end
|
|
977
|
+
|
|
978
|
+
def from_schema_org_creators(element)
|
|
979
|
+
element = Array.wrap(element).map do |c|
|
|
980
|
+
if c["affiliation"].is_a?(String)
|
|
981
|
+
c["affiliation"] = { "name" => c["affiliation"] }
|
|
982
|
+
affiliation_identifier_scheme = nil
|
|
983
|
+
scheme_uri = nil
|
|
984
|
+
elsif c.dig("affiliation", "@id").to_s.starts_with?("https://ror.org")
|
|
985
|
+
affiliation_identifier_scheme = "ROR"
|
|
986
|
+
scheme_uri = "https://ror.org/"
|
|
987
|
+
elsif c.dig("affiliation", "@id").to_s.starts_with?("https://isni.org")
|
|
988
|
+
affiliation_identifier_scheme = "ISNI"
|
|
989
|
+
scheme_uri = "https://isni.org/isni/"
|
|
990
|
+
else
|
|
991
|
+
affiliation_identifier_scheme = nil
|
|
992
|
+
scheme_uri = nil
|
|
993
|
+
end
|
|
994
|
+
|
|
995
|
+
c["nameIdentifier"] = [{ "__content__" => c["@id"], "nameIdentifierScheme" => "ORCID", "schemeUri" => "https://orcid.org" }] if normalize_orcid(c["@id"])
|
|
996
|
+
c["@type"] = c["@type"].find { |t| %w(Person Organization).include?(t) } if c["@type"].is_a?(Array)
|
|
997
|
+
c["creatorName"] = { "nameType" => c["@type"].present? ? c["@type"].titleize + "al" : nil, "__content__" => c["name"] }.compact
|
|
998
|
+
c["affiliation"] = { "__content__" => c.dig("affiliation", "name"), "affiliationIdentifier" => c.dig("affiliation", "@id"), "affiliationIdentifierScheme" => affiliation_identifier_scheme, "schemeUri" => scheme_uri }.compact.presence
|
|
999
|
+
c.except("@id", "@type", "name").compact
|
|
1000
|
+
end
|
|
1001
|
+
end
|
|
1002
|
+
|
|
1003
|
+
def from_schema_org_contributors(element)
|
|
1004
|
+
element = Array.wrap(element).map do |c|
|
|
1005
|
+
if c["affiliation"].is_a?(String)
|
|
1006
|
+
c["affiliation"] = { "name" => c["affiliation"] }
|
|
1007
|
+
affiliation_identifier_scheme = nil
|
|
1008
|
+
scheme_uri = nil
|
|
1009
|
+
elsif c.dig("affiliation", "@id").to_s.starts_with?("https://ror.org")
|
|
1010
|
+
affiliation_identifier_scheme = "ROR"
|
|
1011
|
+
scheme_uri = "https://ror.org/"
|
|
1012
|
+
elsif c.dig("affiliation", "@id").to_s.starts_with?("https://isni.org")
|
|
1013
|
+
affiliation_identifier_scheme = "ISNI"
|
|
1014
|
+
scheme_uri = "https://isni.org/isni/"
|
|
1015
|
+
else
|
|
1016
|
+
affiliation_identifier_scheme = nil
|
|
1017
|
+
scheme_uri = nil
|
|
1018
|
+
end
|
|
1019
|
+
|
|
1020
|
+
c["nameIdentifier"] = [{ "__content__" => c["@id"], "nameIdentifierScheme" => "ORCID", "schemeUri" => "https://orcid.org" }] if normalize_orcid(c["@id"])
|
|
1021
|
+
c["contributorName"] = { "nameType" => c["@type"].present? ? c["@type"].titleize + "al" : nil, "__content__" => c["name"] }.compact
|
|
1022
|
+
c["affiliation"] = { "__content__" => c.dig("affiliation", "name"), "affiliationIdentifier" => c.dig("affiliation", "@id"), "affiliationIdentifierScheme" => affiliation_identifier_scheme, "schemeUri" => scheme_uri }.compact.presence
|
|
1023
|
+
c.except("@id", "@type", "name").compact
|
|
1024
|
+
end
|
|
1025
|
+
end
|
|
1026
|
+
|
|
1027
|
+
def map_hash_keys(element: nil, mapping: nil)
|
|
1028
|
+
Array.wrap(element).map do |a|
|
|
1029
|
+
a.map {|k, v| [mapping.fetch(k, k), v] }.reduce({}) do |hsh, (k, v)|
|
|
1030
|
+
if v.is_a?(Hash)
|
|
1031
|
+
hsh[k] = to_schema_org(v)
|
|
1032
|
+
hsh
|
|
1033
|
+
else
|
|
1034
|
+
hsh[k] = v
|
|
1035
|
+
hsh
|
|
1036
|
+
end
|
|
1037
|
+
end
|
|
1038
|
+
end.unwrap
|
|
1039
|
+
end
|
|
1040
|
+
|
|
1041
|
+
def to_identifier(identifier)
|
|
1042
|
+
{
|
|
1043
|
+
"@type" => "PropertyValue",
|
|
1044
|
+
"propertyID" => identifier["relatedIdentifierType"],
|
|
1045
|
+
"value" => identifier["relatedIdentifier"] }
|
|
1046
|
+
end
|
|
1047
|
+
|
|
1048
|
+
def from_citeproc(element)
|
|
1049
|
+
Array.wrap(element).map do |a|
|
|
1050
|
+
if a["literal"].present?
|
|
1051
|
+
a["@type"] = "Organization"
|
|
1052
|
+
a["creatorName"] = a["literal"]
|
|
1053
|
+
else
|
|
1054
|
+
a["@type"] = "Person"
|
|
1055
|
+
a["name"] = [a["given"], a["family"]].compact.join(" ")
|
|
1056
|
+
end
|
|
1057
|
+
a["givenName"] = a["given"]
|
|
1058
|
+
a["familyName"] = a["family"]
|
|
1059
|
+
a.except("given", "family", "literal").compact
|
|
1060
|
+
end.unwrap
|
|
1061
|
+
end
|
|
1062
|
+
|
|
1063
|
+
def to_citeproc(element)
|
|
1064
|
+
Array.wrap(element).map do |a|
|
|
1065
|
+
a["family"] = a["familyName"]
|
|
1066
|
+
a["given"] = a["givenName"]
|
|
1067
|
+
a["literal"] = a["name"] unless a["familyName"].present?
|
|
1068
|
+
a.except("nameType", "type", "@type", "id", "@id", "name", "familyName", "givenName", "affiliation", "nameIdentifiers", "contributorType").compact
|
|
1069
|
+
end.presence
|
|
1070
|
+
end
|
|
1071
|
+
|
|
1072
|
+
def to_ris(element)
|
|
1073
|
+
Array.wrap(element).map do |a|
|
|
1074
|
+
if a["familyName"].present?
|
|
1075
|
+
[a["familyName"], a["givenName"]].join(", ")
|
|
1076
|
+
else
|
|
1077
|
+
a["name"]
|
|
1078
|
+
end
|
|
1079
|
+
end.unwrap
|
|
1080
|
+
end
|
|
1081
|
+
|
|
1082
|
+
def sanitize(text, options={})
|
|
1083
|
+
options[:tags] ||= Set.new(%w(strong em b i code pre sub sup br))
|
|
1084
|
+
content = options[:content] || "__content__"
|
|
1085
|
+
custom_scrubber = Bolognese::WhitelistScrubber.new(options)
|
|
1086
|
+
|
|
1087
|
+
if text.is_a?(String)
|
|
1088
|
+
if options[:new_line]
|
|
1089
|
+
# Remove multiple spaces, tabs, and other whitespace characters while preserving single spaces and new lines
|
|
1090
|
+
Loofah.scrub_fragment(text, custom_scrubber).to_s.gsub(/[ \t]+/, ' ').strip
|
|
1091
|
+
else
|
|
1092
|
+
Loofah.scrub_fragment(text, custom_scrubber).to_s.squish
|
|
1093
|
+
end
|
|
1094
|
+
elsif text.is_a?(Hash)
|
|
1095
|
+
sanitize(text.fetch(content, nil), new_line: options[:new_line])
|
|
1096
|
+
elsif text.is_a?(Array)
|
|
1097
|
+
a = text.map { |e| e.is_a?(Hash) ? sanitize(e.fetch(content, nil), new_line: options[:new_line]) : sanitize(e, new_line: options[:new_line]) }.uniq
|
|
1098
|
+
a = options[:first] ? a.first : a.unwrap
|
|
50
1099
|
else
|
|
51
1100
|
nil
|
|
52
1101
|
end
|
|
53
1102
|
end
|
|
54
1103
|
|
|
55
|
-
def
|
|
56
|
-
return
|
|
1104
|
+
def github_from_url(url)
|
|
1105
|
+
return {} unless /\Ahttps:\/\/github\.com\/(.+)(?:\/)?(.+)?(?:\/tree\/)?(.*)\z/.match(url)
|
|
1106
|
+
words = URI.parse(url).path[1..-1].split('/')
|
|
1107
|
+
path = words.length > 3 ? words[4...words.length].join("/") : nil
|
|
1108
|
+
|
|
1109
|
+
{ owner: words[0],
|
|
1110
|
+
repo: words[1],
|
|
1111
|
+
release: words[3],
|
|
1112
|
+
path: path }.compact
|
|
1113
|
+
end
|
|
1114
|
+
|
|
1115
|
+
def github_repo_from_url(url)
|
|
1116
|
+
github_from_url(url).fetch(:repo, nil)
|
|
1117
|
+
end
|
|
1118
|
+
|
|
1119
|
+
def github_release_from_url(url)
|
|
1120
|
+
github_from_url(url).fetch(:release, nil)
|
|
1121
|
+
end
|
|
1122
|
+
|
|
1123
|
+
def github_owner_from_url(url)
|
|
1124
|
+
github_from_url(url).fetch(:owner, nil)
|
|
1125
|
+
end
|
|
1126
|
+
|
|
1127
|
+
def github_as_owner_url(url)
|
|
1128
|
+
github_hash = github_from_url(url)
|
|
1129
|
+
"https://github.com/#{github_hash[:owner]}" if github_hash[:owner].present?
|
|
1130
|
+
end
|
|
1131
|
+
|
|
1132
|
+
def github_as_repo_url(url)
|
|
1133
|
+
github_hash = github_from_url(url)
|
|
1134
|
+
"https://github.com/#{github_hash[:owner]}/#{github_hash[:repo]}" if github_hash[:repo].present?
|
|
1135
|
+
end
|
|
1136
|
+
|
|
1137
|
+
def github_as_release_url(url)
|
|
1138
|
+
github_hash = github_from_url(url)
|
|
1139
|
+
"https://github.com/#{github_hash[:owner]}/#{github_hash[:repo]}/tree/#{github_hash[:release]}" if github_hash[:release].present?
|
|
1140
|
+
end
|
|
1141
|
+
|
|
1142
|
+
def github_as_codemeta_url(url)
|
|
1143
|
+
github_hash = github_from_url(url)
|
|
1144
|
+
|
|
1145
|
+
if github_hash[:path].to_s.end_with?("codemeta.json")
|
|
1146
|
+
"https://raw.githubusercontent.com/#{github_hash[:owner]}/#{github_hash[:repo]}/#{github_hash[:release]}/#{github_hash[:path]}"
|
|
1147
|
+
elsif github_hash[:owner].present?
|
|
1148
|
+
"https://raw.githubusercontent.com/#{github_hash[:owner]}/#{github_hash[:repo]}/master/codemeta.json"
|
|
1149
|
+
end
|
|
1150
|
+
end
|
|
1151
|
+
|
|
1152
|
+
def get_date_parts(iso8601_time)
|
|
1153
|
+
return { 'date-parts' => [[]] } if iso8601_time.nil?
|
|
1154
|
+
|
|
1155
|
+
year = iso8601_time[0..3].to_i
|
|
1156
|
+
month = iso8601_time[5..6].to_i
|
|
1157
|
+
day = iso8601_time[8..9].to_i
|
|
1158
|
+
{ 'date-parts' => [[year, month, day].reject { |part| part == 0 }] }
|
|
1159
|
+
rescue TypeError
|
|
1160
|
+
nil
|
|
1161
|
+
end
|
|
1162
|
+
|
|
1163
|
+
def get_date_from_date_parts(date_as_parts)
|
|
1164
|
+
date_parts = date_as_parts.fetch("date-parts", []).first
|
|
1165
|
+
year, month, day = date_parts[0], date_parts[1], date_parts[2]
|
|
1166
|
+
get_date_from_parts(year, month, day)
|
|
1167
|
+
end
|
|
1168
|
+
|
|
1169
|
+
def get_date_from_parts(year, month = nil, day = nil)
|
|
1170
|
+
[year.to_s.rjust(4, '0'), month.to_s.rjust(2, '0'), day.to_s.rjust(2, '0')].reject { |part| part == "00" }.join("-")
|
|
1171
|
+
end
|
|
1172
|
+
|
|
1173
|
+
def get_date_parts_from_parts(year, month = nil, day = nil)
|
|
1174
|
+
{ 'date-parts' => [[year.to_i, month.to_i, day.to_i].reject { |part| part == 0 }] }
|
|
1175
|
+
end
|
|
1176
|
+
|
|
1177
|
+
def get_iso8601_date(iso8601_time)
|
|
1178
|
+
return nil if iso8601_time.nil?
|
|
1179
|
+
|
|
1180
|
+
iso8601_time[0..9]
|
|
1181
|
+
end
|
|
1182
|
+
|
|
1183
|
+
def get_year_month(iso8601_time)
|
|
1184
|
+
return [] if iso8601_time.nil?
|
|
1185
|
+
|
|
1186
|
+
year = iso8601_time[0..3]
|
|
1187
|
+
month = iso8601_time[5..6]
|
|
1188
|
+
|
|
1189
|
+
[year.to_i, month.to_i].reject { |part| part == 0 }
|
|
1190
|
+
end
|
|
1191
|
+
|
|
1192
|
+
def get_year_month_day(iso8601_time)
|
|
1193
|
+
return [] if iso8601_time.nil?
|
|
1194
|
+
|
|
1195
|
+
year = iso8601_time[0..3]
|
|
1196
|
+
month = iso8601_time[5..6]
|
|
1197
|
+
day = iso8601_time[8..9]
|
|
1198
|
+
|
|
1199
|
+
[year.to_i, month.to_i, day.to_i].reject { |part| part == 0 }
|
|
1200
|
+
end
|
|
1201
|
+
|
|
1202
|
+
# parsing of incomplete iso8601 timestamps such as 2015-04 is broken
|
|
1203
|
+
# in standard library
|
|
1204
|
+
# return nil if invalid iso8601 timestamp
|
|
1205
|
+
def get_datetime_from_iso8601(iso8601_time)
|
|
1206
|
+
ISO8601::DateTime.new(iso8601_time).to_time.utc
|
|
1207
|
+
rescue
|
|
1208
|
+
nil
|
|
1209
|
+
end
|
|
1210
|
+
|
|
1211
|
+
# iso8601 datetime without hyphens and colons, used by Crossref
|
|
1212
|
+
# return nil if invalid
|
|
1213
|
+
def get_datetime_from_time(time)
|
|
1214
|
+
DateTime.strptime(time.to_s, "%Y%m%d%H%M%S").strftime('%Y-%m-%dT%H:%M:%SZ')
|
|
1215
|
+
rescue ArgumentError
|
|
1216
|
+
nil
|
|
1217
|
+
end
|
|
1218
|
+
|
|
1219
|
+
def get_date(dates, date_type)
|
|
1220
|
+
dd = Array.wrap(dates).find { |d| d["dateType"] == date_type } || {}
|
|
1221
|
+
dd.fetch("date", nil)
|
|
1222
|
+
end
|
|
1223
|
+
|
|
1224
|
+
def get_contributor(contributor, contributor_type)
|
|
1225
|
+
contributor.select { |c| c["contributorType"] == contributor_type }
|
|
1226
|
+
end
|
|
1227
|
+
|
|
1228
|
+
def get_identifier(identifiers, identifier_type)
|
|
1229
|
+
id = Array.wrap(identifiers).find { |i| i["identifierType"] == identifier_type } || {}
|
|
1230
|
+
id.fetch("identifier", nil)
|
|
1231
|
+
end
|
|
1232
|
+
|
|
1233
|
+
def get_identifier_type(identifier_type)
|
|
1234
|
+
return nil unless identifier_type.present?
|
|
1235
|
+
|
|
1236
|
+
identifierTypes = {
|
|
1237
|
+
"ark" => "ARK",
|
|
1238
|
+
"arxiv" => "arXiv",
|
|
1239
|
+
"bibcode" => "bibcode",
|
|
1240
|
+
"doi" => "DOI",
|
|
1241
|
+
"ean13" => "EAN13",
|
|
1242
|
+
"eissn" => "EISSN",
|
|
1243
|
+
"handle" => "Handle",
|
|
1244
|
+
"igsn" => "IGSN",
|
|
1245
|
+
"isbn" => "ISBN",
|
|
1246
|
+
"issn" => "ISSN",
|
|
1247
|
+
"istc" => "ISTC",
|
|
1248
|
+
"lissn" => "LISSN",
|
|
1249
|
+
"lsid" => "LSID",
|
|
1250
|
+
"pmid" => "PMID",
|
|
1251
|
+
"purl" => "PURL",
|
|
1252
|
+
"upc" => "UPC",
|
|
1253
|
+
"url" => "URL",
|
|
1254
|
+
"urn" => "URN",
|
|
1255
|
+
"md5" => "md5",
|
|
1256
|
+
"minid" => "minid",
|
|
1257
|
+
"dataguid" => "dataguid",
|
|
1258
|
+
"cstr" => "CSTR",
|
|
1259
|
+
"rrid" => "RRID"
|
|
1260
|
+
}
|
|
1261
|
+
|
|
1262
|
+
identifierTypes[identifier_type.downcase] || identifier_type
|
|
1263
|
+
end
|
|
1264
|
+
|
|
1265
|
+
def get_series_information(str)
|
|
1266
|
+
return {} unless str.present?
|
|
1267
|
+
|
|
1268
|
+
str = str.split(",").map(&:strip)
|
|
1269
|
+
|
|
1270
|
+
title = str.first
|
|
1271
|
+
volume_issue = str.length > 2 ? str[1].rpartition(/\(([^)]+)\)/) : nil
|
|
1272
|
+
volume = volume_issue.present? ? volume_issue[0].presence || volume_issue[2].presence : nil
|
|
1273
|
+
issue = volume_issue.present? ? volume_issue[1][1...-1].presence : nil
|
|
1274
|
+
pages = str.length > 1 ? str.last : nil
|
|
1275
|
+
first_page = pages.present? ? pages.split("-").map(&:strip)[0] : nil
|
|
1276
|
+
last_page = pages.present? ? pages.split("-").map(&:strip)[1] : nil
|
|
1277
|
+
|
|
1278
|
+
{
|
|
1279
|
+
"title" => title,
|
|
1280
|
+
"volume" => volume,
|
|
1281
|
+
"issue" => issue,
|
|
1282
|
+
"firstPage" => first_page,
|
|
1283
|
+
"lastPage" => last_page }.compact
|
|
1284
|
+
end
|
|
1285
|
+
|
|
1286
|
+
def jsonlint(json)
|
|
1287
|
+
return ["No JSON provided"] unless json.present?
|
|
1288
|
+
|
|
1289
|
+
error_array = []
|
|
1290
|
+
linter = JsonLint::Linter.new
|
|
1291
|
+
linter.send(:check_data, json, error_array)
|
|
1292
|
+
error_array
|
|
1293
|
+
end
|
|
1294
|
+
|
|
1295
|
+
def name_to_spdx(name)
|
|
1296
|
+
spdx = resource_json(:spdx).fetch("licenses")
|
|
1297
|
+
license = spdx.find { |l| l["name"] == name || l["licenseId"] == name || l["seeAlso"].first == normalize_cc_url(name) }
|
|
1298
|
+
|
|
1299
|
+
if license
|
|
1300
|
+
{
|
|
1301
|
+
"rights" => license["name"],
|
|
1302
|
+
"rightsUri" => license["seeAlso"].first,
|
|
1303
|
+
"rightsIdentifier" => license["licenseId"].downcase,
|
|
1304
|
+
"rightsIdentifierScheme" => "SPDX",
|
|
1305
|
+
"schemeUri" => "https://spdx.org/licenses/" }.compact
|
|
1306
|
+
else
|
|
1307
|
+
{ "rights" => name }
|
|
1308
|
+
end
|
|
1309
|
+
end
|
|
1310
|
+
|
|
1311
|
+
def hsh_to_spdx(hsh)
|
|
1312
|
+
spdx = resource_json(:spdx).fetch("licenses")
|
|
1313
|
+
license = spdx.find { |l| l["licenseId"].casecmp?(hsh["rightsIdentifier"]) || l["seeAlso"].first == normalize_cc_url(hsh["rightsURI"]) || l["name"] == hsh["rights"] || l["seeAlso"].first == normalize_cc_url(hsh["rights"]) }
|
|
57
1314
|
|
|
58
|
-
|
|
1315
|
+
if license
|
|
1316
|
+
{
|
|
1317
|
+
"rights" => license["name"],
|
|
1318
|
+
"rightsUri" => license["seeAlso"].first,
|
|
1319
|
+
"rightsIdentifier" => license["licenseId"].downcase,
|
|
1320
|
+
"rightsIdentifierScheme" => "SPDX",
|
|
1321
|
+
"schemeUri" => "https://spdx.org/licenses/",
|
|
1322
|
+
"lang" => hsh["lang"] }.compact
|
|
1323
|
+
else
|
|
1324
|
+
{
|
|
1325
|
+
"rights" => hsh["__content__"] || hsh["rights"],
|
|
1326
|
+
"rightsUri" => hsh["rightsURI"] || hsh["rightsUri"],
|
|
1327
|
+
"rightsIdentifier" => hsh["rightsIdentifier"].present? ? hsh["rightsIdentifier"].downcase : nil,
|
|
1328
|
+
"rightsIdentifierScheme" => hsh["rightsIdentifierScheme"],
|
|
1329
|
+
"schemeUri" => hsh["schemeUri"],
|
|
1330
|
+
"lang" => hsh["lang"] }.compact
|
|
1331
|
+
end
|
|
59
1332
|
end
|
|
60
1333
|
|
|
61
|
-
def
|
|
62
|
-
|
|
1334
|
+
def name_to_fos(name)
|
|
1335
|
+
# first find subject in Fields of Science (OECD)
|
|
1336
|
+
fos = resource_json(:fos).fetch("fosFields")
|
|
1337
|
+
|
|
1338
|
+
subject = fos.find { |l| l["fosLabel"] == name || "FOS: " + l["fosLabel"] == name }
|
|
1339
|
+
|
|
1340
|
+
if subject
|
|
1341
|
+
return [{
|
|
1342
|
+
"subject" => sanitize(name) },
|
|
1343
|
+
{
|
|
1344
|
+
"subject" => "FOS: " + subject["fosLabel"],
|
|
1345
|
+
"subjectScheme" => "Fields of Science and Technology (FOS)",
|
|
1346
|
+
"schemeUri" => "http://www.oecd.org/science/inno/38235147.pdf"
|
|
1347
|
+
}]
|
|
1348
|
+
end
|
|
1349
|
+
|
|
1350
|
+
# if not found, look in Fields of Research (Australian and New Zealand Standard Research Classification)
|
|
1351
|
+
# and map to Fields of Science. Add an extra entry for the latter
|
|
1352
|
+
fores = resource_json(:for)
|
|
1353
|
+
for_fields = fores.fetch("forFields")
|
|
1354
|
+
for_disciplines = fores.fetch("forDisciplines")
|
|
1355
|
+
|
|
1356
|
+
subject = for_fields.find { |l| l["forLabel"] == name } ||
|
|
1357
|
+
for_disciplines.find { |l| l["forLabel"] == name }
|
|
1358
|
+
|
|
1359
|
+
if subject
|
|
1360
|
+
[{
|
|
1361
|
+
"subject" => sanitize(name) },
|
|
1362
|
+
{
|
|
1363
|
+
"subject" => "FOS: " + subject["fosLabel"],
|
|
1364
|
+
"subjectScheme" => "Fields of Science and Technology (FOS)",
|
|
1365
|
+
"schemeUri" => "http://www.oecd.org/science/inno/38235147.pdf"
|
|
1366
|
+
}]
|
|
1367
|
+
else
|
|
1368
|
+
[{ "subject" => sanitize(name) }]
|
|
1369
|
+
end
|
|
1370
|
+
end
|
|
1371
|
+
|
|
1372
|
+
def hsh_to_fos(hsh)
|
|
1373
|
+
# first find subject in Fields of Science (OECD)
|
|
1374
|
+
fos = resource_json(:fos).fetch("fosFields")
|
|
1375
|
+
subject = fos.find { |l| l["fosLabel"] == hsh["__content__"] || "FOS: " + l["fosLabel"] == hsh["__content__"] || l["fosLabel"] == hsh["subject"]}
|
|
1376
|
+
|
|
1377
|
+
if subject
|
|
1378
|
+
return [{
|
|
1379
|
+
"subject" => sanitize(hsh["__content__"] || hsh["subject"]),
|
|
1380
|
+
"subjectScheme" => hsh["subjectScheme"],
|
|
1381
|
+
"schemeUri" => hsh["schemeURI"] || hsh["schemeUri"],
|
|
1382
|
+
"valueUri" => hsh["valueURI"] || hsh["valueUri"],
|
|
1383
|
+
"classificationCode" => hsh["classificationCode"],
|
|
1384
|
+
"lang" => hsh["lang"] }.compact,
|
|
1385
|
+
{
|
|
1386
|
+
"subject" => "FOS: " + subject["fosLabel"],
|
|
1387
|
+
"subjectScheme" => "Fields of Science and Technology (FOS)",
|
|
1388
|
+
"schemeUri" => "http://www.oecd.org/science/inno/38235147.pdf" }.compact]
|
|
1389
|
+
end
|
|
1390
|
+
|
|
1391
|
+
# if not found, look in Fields of Research (Australian and New Zealand Standard Research Classification)
|
|
1392
|
+
# and map to Fields of Science. Add an extra entry for the latter
|
|
1393
|
+
fores = resource_json(:for)
|
|
1394
|
+
for_fields = fores.fetch("forFields")
|
|
1395
|
+
for_disciplines = fores.fetch("forDisciplines")
|
|
1396
|
+
|
|
1397
|
+
# try to extract forId
|
|
1398
|
+
if hsh["subjectScheme"] == "FOR"
|
|
1399
|
+
for_id = hsh["__content__"].to_s.split(" ").first || hsh["subject"].to_s.split(" ").first
|
|
1400
|
+
for_id = for_id.rjust(6, "0")
|
|
1401
|
+
|
|
1402
|
+
subject = for_fields.find { |l| l["forId"] == for_id } ||
|
|
1403
|
+
for_disciplines.find { |l| l["forId"] == for_id[0..3] }
|
|
1404
|
+
else
|
|
1405
|
+
subject = for_fields.find { |l| l["forLabel"] == hsh["__content__"] || l["forLabel"] == hsh["subject"] } ||
|
|
1406
|
+
for_disciplines.find { |l| l["forLabel"] == hsh["__content__"] || l["forLabel"] == hsh["subject"] }
|
|
1407
|
+
end
|
|
1408
|
+
|
|
1409
|
+
if subject
|
|
1410
|
+
[{
|
|
1411
|
+
"subject" => sanitize(hsh["__content__"] || hsh["subject"]),
|
|
1412
|
+
"subjectScheme" => hsh["subjectScheme"],
|
|
1413
|
+
"classificationCode" => hsh["classificationCode"],
|
|
1414
|
+
"schemeUri" => hsh["schemeURI"] || hsh["schemeUri"],
|
|
1415
|
+
"valueUri" => hsh["valueURI"] || hsh["valueUri"],
|
|
1416
|
+
"lang" => hsh["lang"] }.compact,
|
|
1417
|
+
{
|
|
1418
|
+
"subject" => "FOS: " + subject["fosLabel"],
|
|
1419
|
+
"subjectScheme" => "Fields of Science and Technology (FOS)",
|
|
1420
|
+
"schemeUri" => "http://www.oecd.org/science/inno/38235147.pdf"
|
|
1421
|
+
}]
|
|
1422
|
+
else
|
|
1423
|
+
[{
|
|
1424
|
+
"subject" => sanitize(hsh["__content__"] || hsh["subject"]),
|
|
1425
|
+
"subjectScheme" => hsh["subjectScheme"],
|
|
1426
|
+
"classificationCode" => hsh["classificationCode"],
|
|
1427
|
+
"schemeUri" => hsh["schemeURI"] || hsh["schemeUri"],
|
|
1428
|
+
"valueUri" => hsh["valueURI"] || hsh["valueUri"],
|
|
1429
|
+
"lang" => hsh["lang"] }.compact]
|
|
1430
|
+
end
|
|
1431
|
+
end
|
|
1432
|
+
|
|
1433
|
+
def dfg_ids_to_fos(dfg_ids)
|
|
1434
|
+
dfgs = resource_json(:dfg).fetch("dfgFields")
|
|
1435
|
+
ids = Array.wrap(dfg_ids)
|
|
1436
|
+
|
|
1437
|
+
subjects = dfgs.select { |l| ids.include?(l["dfgId"])}
|
|
1438
|
+
subjects.map do |subject|
|
|
1439
|
+
{
|
|
1440
|
+
"classificationCode" => subject["fosId"],
|
|
1441
|
+
"subject" => subject["fosLabel"],
|
|
1442
|
+
"subjectScheme" => "Fields of Science and Technology (FOS)",
|
|
1443
|
+
"schemeUri" => "http://www.oecd.org/science/inno/38235147.pdf"
|
|
1444
|
+
}
|
|
1445
|
+
end
|
|
1446
|
+
end
|
|
1447
|
+
|
|
1448
|
+
def abstract_description
|
|
1449
|
+
# Fetch the first description with descriptionType "Abstract"
|
|
1450
|
+
Array.wrap(descriptions)&.find { |d| d["descriptionType"] == "Abstract" }
|
|
1451
|
+
end
|
|
1452
|
+
|
|
1453
|
+
def generate_container(types, related_items, related_identifiers, descriptions)
|
|
1454
|
+
container_type = (types.respond_to?(:dig) && types&.dig("resourceTypeGeneral")) == "Dataset" ? "DataRepository" : "Series"
|
|
1455
|
+
|
|
1456
|
+
# relatedItem container
|
|
1457
|
+
related_item = Array.wrap(related_items).find { |ri| ri["relationType"] == "IsPublishedIn" }.to_h
|
|
1458
|
+
|
|
1459
|
+
if related_item.present?
|
|
1460
|
+
return {
|
|
1461
|
+
"type" => container_type,
|
|
1462
|
+
"identifier" => related_item.dig("relatedItemIdentifier", "relatedItemIdentifier"),
|
|
1463
|
+
"identifierType" => related_item.dig("relatedItemIdentifier", "relatedItemIdentifierType"),
|
|
1464
|
+
"title" => related_item.dig("titles", 0).then { |t| t ? parse_attributes(t, content: "title", first: true) : nil },
|
|
1465
|
+
"volume" => related_item["volume"],
|
|
1466
|
+
"issue" => related_item["issue"],
|
|
1467
|
+
"edition" => related_item["edition"],
|
|
1468
|
+
"number" => related_item["number"],
|
|
1469
|
+
"chapterNumber" => related_item["numberType"] == "Chapter" ? related_item["number"] : nil,
|
|
1470
|
+
"firstPage" => related_item["firstPage"],
|
|
1471
|
+
"lastPage" => related_item["lastPage"]
|
|
1472
|
+
}.compact
|
|
1473
|
+
end
|
|
1474
|
+
|
|
1475
|
+
# Legacy SeriesInformation/relatedIdentifier container fallback
|
|
1476
|
+
series_information = Array.wrap(descriptions).find { |r| r["descriptionType"] == "SeriesInformation" }.to_h.fetch("description", nil)
|
|
1477
|
+
si = get_series_information(series_information)
|
|
1478
|
+
|
|
1479
|
+
is_part_of = Array.wrap(related_identifiers).find { |ri| ri["relationType"] == "IsPartOf" }.to_h
|
|
1480
|
+
|
|
1481
|
+
if si["title"].present?
|
|
1482
|
+
return {
|
|
1483
|
+
"type" => container_type,
|
|
1484
|
+
"identifier" => is_part_of["relatedIdentifier"],
|
|
1485
|
+
"identifierType" => is_part_of["relatedIdentifierType"],
|
|
1486
|
+
"title" => si["title"],
|
|
1487
|
+
"volume" => si["volume"],
|
|
1488
|
+
"issue" => si["issue"],
|
|
1489
|
+
"firstPage" => si["firstPage"],
|
|
1490
|
+
"lastPage" => si["lastPage"]
|
|
1491
|
+
}.compact
|
|
1492
|
+
end
|
|
1493
|
+
end
|
|
1494
|
+
|
|
1495
|
+
private
|
|
1496
|
+
|
|
1497
|
+
def normalize_uri_with_path_cleanup(uri)
|
|
1498
|
+
normalized_uri = uri.normalize
|
|
1499
|
+
normalized_uri.path = normalized_uri.path.sub(%r{/\z}, "") if normalized_uri.path.present?
|
|
1500
|
+
normalized_uri.to_s
|
|
63
1501
|
end
|
|
64
1502
|
end
|
|
65
1503
|
end
|