bolognese 0.4.3 → 2.6.1

This diff represents the content of publicly available package versions that have been released to one of the supported registries. The information contained in this diff is provided for informational purposes only and reflects changes between package versions as they appear in their respective public registries.
Files changed (326) hide show
  1. checksums.yaml +5 -5
  2. data/.github/workflows/build.yml +9 -0
  3. data/.github/workflows/changelog.yml +36 -0
  4. data/.github/workflows/ci.yml +22 -0
  5. data/.github/workflows/pull-request.yml +9 -0
  6. data/.github/workflows/release.yml +32 -0
  7. data/.gitignore +4 -0
  8. data/.rubocop.yml +658 -0
  9. data/CHANGELOG.md +1864 -0
  10. data/CITATION +17 -0
  11. data/Gemfile +1 -1
  12. data/Gemfile.lock +250 -98
  13. data/README.md +963 -21
  14. data/Rakefile +1 -0
  15. data/bin/bolognese +5 -1
  16. data/bolognese.gemspec +33 -21
  17. data/lib/bolognese/array.rb +13 -0
  18. data/lib/bolognese/author_utils.rb +147 -33
  19. data/lib/bolognese/citeproc_extensions.rb +48 -0
  20. data/lib/bolognese/cli.rb +28 -21
  21. data/lib/bolognese/datacite_utils.rb +292 -104
  22. data/lib/bolognese/doi_utils.rb +44 -20
  23. data/lib/bolognese/metadata.rb +249 -23
  24. data/lib/bolognese/metadata_utils.rb +228 -0
  25. data/lib/bolognese/pubmed.rb +2 -0
  26. data/lib/bolognese/readers/bibtex_reader.rb +100 -0
  27. data/lib/bolognese/readers/citeproc_reader.rb +125 -0
  28. data/lib/bolognese/readers/codemeta_reader.rb +108 -0
  29. data/lib/bolognese/readers/crosscite_reader.rb +17 -0
  30. data/lib/bolognese/readers/crossref_reader.rb +413 -0
  31. data/lib/bolognese/readers/datacite_json_reader.rb +17 -0
  32. data/lib/bolognese/readers/datacite_reader.rb +341 -0
  33. data/lib/bolognese/readers/npm_reader.rb +115 -0
  34. data/lib/bolognese/readers/ris_reader.rb +114 -0
  35. data/lib/bolognese/readers/schema_org_reader.rb +264 -0
  36. data/lib/bolognese/string.rb +3 -1
  37. data/lib/bolognese/utils.rb +1463 -25
  38. data/lib/bolognese/version.rb +1 -1
  39. data/lib/bolognese/whitelist_scrubber.rb +47 -0
  40. data/lib/bolognese/writers/bibtex_writer.rb +32 -0
  41. data/lib/bolognese/writers/citation_writer.rb +14 -0
  42. data/lib/bolognese/writers/citeproc_writer.rb +11 -0
  43. data/lib/bolognese/writers/codemeta_writer.rb +29 -0
  44. data/lib/bolognese/writers/crosscite_writer.rb +11 -0
  45. data/lib/bolognese/writers/crossref_writer.rb +11 -0
  46. data/lib/bolognese/writers/csv_writer.rb +24 -0
  47. data/lib/bolognese/writers/datacite_json_writer.rb +13 -0
  48. data/lib/bolognese/writers/datacite_writer.rb +12 -0
  49. data/lib/bolognese/writers/jats_writer.rb +137 -0
  50. data/lib/bolognese/writers/rdf_xml_writer.rb +11 -0
  51. data/lib/bolognese/writers/ris_writer.rb +29 -0
  52. data/lib/bolognese/writers/schema_org_writer.rb +55 -0
  53. data/lib/bolognese/writers/turtle_writer.rb +11 -0
  54. data/lib/bolognese.rb +19 -5
  55. data/package.json +12 -0
  56. data/resources/2008/09/xsd.xsl +997 -0
  57. data/resources/datacite-contributorType-v4.xsd +35 -0
  58. data/resources/datacite-dateType-v4.xsd +25 -0
  59. data/resources/datacite-descriptionType-v4.xsd +19 -0
  60. data/resources/datacite-funderIdentifierType-v4.xsd +15 -0
  61. data/resources/datacite-nameType-v4.xsd +10 -0
  62. data/resources/datacite-relatedIdentifierType-v4.xsd +34 -0
  63. data/resources/datacite-relationType-v4.xsd +49 -0
  64. data/resources/datacite-resourceType-v4.xsd +28 -0
  65. data/resources/datacite-titleType-v4.xsd +14 -0
  66. data/resources/kernel-2.1/include/datacite-contributorType-v1.1.xsd +22 -0
  67. data/resources/kernel-2.1/include/datacite-contributorType-v2.xsd +3 -0
  68. data/resources/kernel-2.1/include/datacite-dateType-v1.1.xsd +31 -0
  69. data/resources/kernel-2.1/include/datacite-dateType-v2.xsd +3 -0
  70. data/resources/kernel-2.1/include/datacite-descriptionType-v1.1.xsd +14 -0
  71. data/resources/kernel-2.1/include/datacite-descriptionType-v2.xsd +3 -0
  72. data/resources/kernel-2.1/include/datacite-relatedIdentifierType-v1.1.xsd +24 -0
  73. data/resources/kernel-2.1/include/datacite-relatedIdentifierType-v2.xsd +3 -0
  74. data/resources/kernel-2.1/include/datacite-relationType-v1.1.xsd +29 -0
  75. data/resources/kernel-2.1/include/datacite-relationType-v2.xsd +3 -0
  76. data/resources/kernel-2.1/include/datacite-resourceType-v1.1.xsd +22 -0
  77. data/resources/kernel-2.1/include/datacite-resourceType-v2.xsd +3 -0
  78. data/resources/kernel-2.1/include/datacite-titleType-v1.1.xsd +11 -0
  79. data/resources/kernel-2.1/include/datacite-titleType-v2.xsd +3 -0
  80. data/resources/kernel-2.1/metadata.xsd +315 -0
  81. data/resources/kernel-2.2/include/datacite-contributorType-v2.xsd +29 -0
  82. data/resources/kernel-2.2/include/datacite-dateType-v2.xsd +21 -0
  83. data/resources/kernel-2.2/include/datacite-descriptionType-v2.xsd +15 -0
  84. data/resources/kernel-2.2/include/datacite-relatedIdentifierType-v2.xsd +25 -0
  85. data/resources/kernel-2.2/include/datacite-relationType-v2.xsd +29 -0
  86. data/resources/kernel-2.2/include/datacite-resourceType-v2.xsd +23 -0
  87. data/resources/kernel-2.2/include/datacite-titleType-v2.xsd +10 -0
  88. data/resources/kernel-2.2/metadata.xsd +316 -0
  89. data/resources/kernel-3/include/datacite-contributorType-v3.1.xsd +35 -0
  90. data/resources/kernel-3/include/datacite-dateType-v3.xsd +21 -0
  91. data/resources/kernel-3/include/datacite-descriptionType-v3.xsd +17 -0
  92. data/resources/kernel-3/include/datacite-relatedIdentifierType-v3.1.xsd +30 -0
  93. data/resources/kernel-3/include/datacite-relationType-v3.1.xsd +38 -0
  94. data/resources/kernel-3/include/datacite-resourceType-v3.xsd +26 -0
  95. data/resources/kernel-3/include/datacite-titleType-v3.xsd +12 -0
  96. data/resources/kernel-3/include/xml.xsd +286 -0
  97. data/resources/kernel-3/metadata.xsd +380 -0
  98. data/resources/kernel-3.0/include/datacite-contributorType-v3.xsd +33 -0
  99. data/resources/kernel-3.0/include/datacite-dateType-v3.xsd +21 -0
  100. data/resources/kernel-3.0/include/datacite-descriptionType-v3.xsd +17 -0
  101. data/resources/kernel-3.0/include/datacite-relatedIdentifierType-v3.xsd +27 -0
  102. data/resources/kernel-3.0/include/datacite-relationType-v3.xsd +33 -0
  103. data/resources/kernel-3.0/include/datacite-resourceType-v3.xsd +26 -0
  104. data/resources/kernel-3.0/include/datacite-titleType-v3.xsd +12 -0
  105. data/resources/kernel-3.0/include/xml.xsd +286 -0
  106. data/resources/kernel-3.0/metadata.xsd +377 -0
  107. data/resources/kernel-3.1/include/datacite-contributorType-v3.1.xsd +35 -0
  108. data/resources/kernel-3.1/include/datacite-dateType-v3.xsd +21 -0
  109. data/resources/kernel-3.1/include/datacite-descriptionType-v3.xsd +17 -0
  110. data/resources/kernel-3.1/include/datacite-relatedIdentifierType-v3.1.xsd +30 -0
  111. data/resources/kernel-3.1/include/datacite-relationType-v3.1.xsd +38 -0
  112. data/resources/kernel-3.1/include/datacite-resourceType-v3.xsd +26 -0
  113. data/resources/kernel-3.1/include/datacite-titleType-v3.xsd +12 -0
  114. data/resources/kernel-3.1/include/xml.xsd +286 -0
  115. data/resources/kernel-3.1/metadata.xsd +380 -0
  116. data/resources/kernel-4/include/datacite-contributorType-v4.xsd +37 -0
  117. data/resources/kernel-4/include/datacite-dateType-v4.xsd +27 -0
  118. data/resources/kernel-4/include/datacite-descriptionType-v4.xsd +19 -0
  119. data/resources/kernel-4/include/datacite-funderIdentifierType-v4.xsd +16 -0
  120. data/resources/kernel-4/include/datacite-nameType-v4.xsd +10 -0
  121. data/resources/kernel-4/include/datacite-numberType-v4.xsd +12 -0
  122. data/resources/kernel-4/include/datacite-relatedIdentifierType-v4.xsd +39 -0
  123. data/resources/kernel-4/include/datacite-relationType-v4.xsd +59 -0
  124. data/resources/kernel-4/include/datacite-resourceType-v4.xsd +52 -0
  125. data/resources/kernel-4/include/datacite-titleType-v4.xsd +14 -0
  126. data/resources/kernel-4/include/xml.xsd +286 -0
  127. data/resources/kernel-4/metadata.xsd +715 -0
  128. data/resources/kernel-4.0/include/datacite-contributorType-v4.xsd +1 -1
  129. data/resources/kernel-4.0/include/datacite-dateType-v4.xsd +1 -1
  130. data/resources/kernel-4.0/include/datacite-descriptionType-v4.xsd +1 -1
  131. data/resources/kernel-4.0/include/datacite-funderIdentifierType-v4.xsd +1 -1
  132. data/resources/kernel-4.0/include/datacite-relatedIdentifierType-v4.xsd +1 -1
  133. data/resources/kernel-4.0/include/datacite-relationType-v4.xsd +1 -1
  134. data/resources/kernel-4.0/include/datacite-resourceType-v4.xsd +1 -1
  135. data/resources/kernel-4.0/include/datacite-titleType-v4.xsd +1 -1
  136. data/resources/kernel-4.0/include/xml.xsd +286 -0
  137. data/resources/kernel-4.0/metadata.xsd +2 -2
  138. data/resources/kernel-4.1/include/datacite-contributorType-v4.xsd +35 -0
  139. data/resources/kernel-4.1/include/datacite-dateType-v4.1.xsd +23 -0
  140. data/resources/kernel-4.1/include/datacite-descriptionType-v4.xsd +19 -0
  141. data/resources/kernel-4.1/include/datacite-funderIdentifierType-v4.xsd +15 -0
  142. data/resources/kernel-4.1/include/datacite-nameType-v4.1.xsd +10 -0
  143. data/resources/kernel-4.1/include/datacite-relatedIdentifierType-v4.xsd +32 -0
  144. data/resources/kernel-4.1/include/datacite-relationType-v4.1.xsd +46 -0
  145. data/resources/kernel-4.1/include/datacite-resourceType-v4.1.xsd +28 -0
  146. data/resources/kernel-4.1/include/datacite-titleType-v4.xsd +14 -0
  147. data/resources/kernel-4.1/include/xml.xsd +286 -0
  148. data/resources/kernel-4.1/metadata.xsd +483 -0
  149. data/resources/kernel-4.2/include/datacite-contributorType-v4.xsd +35 -0
  150. data/resources/kernel-4.2/include/datacite-dateType-v4.xsd +25 -0
  151. data/resources/kernel-4.2/include/datacite-descriptionType-v4.xsd +19 -0
  152. data/resources/kernel-4.2/include/datacite-funderIdentifierType-v4.xsd +15 -0
  153. data/resources/kernel-4.2/include/datacite-nameType-v4.xsd +10 -0
  154. data/resources/kernel-4.2/include/datacite-relatedIdentifierType-v4.xsd +34 -0
  155. data/resources/kernel-4.2/include/datacite-relationType-v4.xsd +49 -0
  156. data/resources/kernel-4.2/include/datacite-resourceType-v4.xsd +28 -0
  157. data/resources/kernel-4.2/include/datacite-titleType-v4.xsd +14 -0
  158. data/resources/kernel-4.2/include/xml.xsd +286 -0
  159. data/resources/kernel-4.2/metadata.xsd +479 -0
  160. data/resources/kernel-4.3/include/datacite-contributorType-v4.xsd +35 -0
  161. data/resources/kernel-4.3/include/datacite-dateType-v4.xsd +25 -0
  162. data/resources/kernel-4.3/include/datacite-descriptionType-v4.xsd +19 -0
  163. data/resources/kernel-4.3/include/datacite-funderIdentifierType-v4.xsd +16 -0
  164. data/resources/kernel-4.3/include/datacite-nameType-v4.xsd +10 -0
  165. data/resources/kernel-4.3/include/datacite-relatedIdentifierType-v4.xsd +34 -0
  166. data/resources/kernel-4.3/include/datacite-relationType-v4.xsd +49 -0
  167. data/resources/kernel-4.3/include/datacite-resourceType-v4.xsd +28 -0
  168. data/resources/kernel-4.3/include/datacite-titleType-v4.xsd +14 -0
  169. data/resources/kernel-4.3/include/xml.xsd +286 -0
  170. data/resources/kernel-4.3/metadata.xsd +515 -0
  171. data/resources/kernel-4.4/include/datacite-contributorType-v4.xsd +35 -0
  172. data/resources/kernel-4.4/include/datacite-dateType-v4.xsd +25 -0
  173. data/resources/kernel-4.4/include/datacite-descriptionType-v4.xsd +19 -0
  174. data/resources/kernel-4.4/include/datacite-funderIdentifierType-v4.xsd +16 -0
  175. data/resources/kernel-4.4/include/datacite-nameType-v4.xsd +10 -0
  176. data/resources/kernel-4.4/include/datacite-numberType-v4.xsd +12 -0
  177. data/resources/kernel-4.4/include/datacite-relatedIdentifierType-v4.xsd +34 -0
  178. data/resources/kernel-4.4/include/datacite-relationType-v4.xsd +51 -0
  179. data/resources/kernel-4.4/include/datacite-resourceType-v4.xsd +43 -0
  180. data/resources/kernel-4.4/include/datacite-titleType-v4.xsd +14 -0
  181. data/resources/kernel-4.4/include/xml.xsd +286 -0
  182. data/resources/kernel-4.4/metadata.xsd +707 -0
  183. data/resources/kernel-4.5/include/datacite-contributorType-v4.xsd +35 -0
  184. data/resources/kernel-4.5/include/datacite-dateType-v4.xsd +25 -0
  185. data/resources/kernel-4.5/include/datacite-descriptionType-v4.xsd +19 -0
  186. data/resources/kernel-4.5/include/datacite-funderIdentifierType-v4.xsd +16 -0
  187. data/resources/kernel-4.5/include/datacite-nameType-v4.xsd +10 -0
  188. data/resources/kernel-4.5/include/datacite-numberType-v4.xsd +12 -0
  189. data/resources/kernel-4.5/include/datacite-relatedIdentifierType-v4.xsd +34 -0
  190. data/resources/kernel-4.5/include/datacite-relationType-v4.xsd +53 -0
  191. data/resources/kernel-4.5/include/datacite-resourceType-v4.xsd +45 -0
  192. data/resources/kernel-4.5/include/datacite-titleType-v4.xsd +14 -0
  193. data/resources/kernel-4.5/include/xml.xsd +286 -0
  194. data/resources/kernel-4.5/metadata.xsd +711 -0
  195. data/resources/kernel-4.6/include/datacite-contributorType-v4.xsd +37 -0
  196. data/resources/kernel-4.6/include/datacite-dateType-v4.xsd +27 -0
  197. data/resources/kernel-4.6/include/datacite-descriptionType-v4.xsd +19 -0
  198. data/resources/kernel-4.6/include/datacite-funderIdentifierType-v4.xsd +16 -0
  199. data/resources/kernel-4.6/include/datacite-nameType-v4.xsd +10 -0
  200. data/resources/kernel-4.6/include/datacite-numberType-v4.xsd +12 -0
  201. data/resources/kernel-4.6/include/datacite-relatedIdentifierType-v4.xsd +37 -0
  202. data/resources/kernel-4.6/include/datacite-relationType-v4.xsd +57 -0
  203. data/resources/kernel-4.6/include/datacite-resourceType-v4.xsd +49 -0
  204. data/resources/kernel-4.6/include/datacite-titleType-v4.xsd +14 -0
  205. data/resources/kernel-4.6/include/xml.xsd +286 -0
  206. data/resources/kernel-4.6/metadata.xsd +712 -0
  207. data/resources/kernel-4.7/include/datacite-contributorType-v4.xsd +37 -0
  208. data/resources/kernel-4.7/include/datacite-dateType-v4.xsd +27 -0
  209. data/resources/kernel-4.7/include/datacite-descriptionType-v4.xsd +19 -0
  210. data/resources/kernel-4.7/include/datacite-funderIdentifierType-v4.xsd +16 -0
  211. data/resources/kernel-4.7/include/datacite-nameType-v4.xsd +10 -0
  212. data/resources/kernel-4.7/include/datacite-numberType-v4.xsd +12 -0
  213. data/resources/kernel-4.7/include/datacite-relatedIdentifierType-v4.xsd +39 -0
  214. data/resources/kernel-4.7/include/datacite-relationType-v4.xsd +59 -0
  215. data/resources/kernel-4.7/include/datacite-resourceType-v4.xsd +52 -0
  216. data/resources/kernel-4.7/include/datacite-titleType-v4.xsd +14 -0
  217. data/resources/kernel-4.7/include/xml.xsd +286 -0
  218. data/resources/kernel-4.7/metadata.xsd +715 -0
  219. data/resources/oecd/dfg-mappings.json +1866 -0
  220. data/resources/oecd/for-mappings.json +1101 -0
  221. data/resources/oecd/fos-mappings.json +198 -0
  222. data/resources/schema_org/jsonldcontext.json +7477 -0
  223. data/resources/spdx/licenses.json +5297 -0
  224. data/resources/xml.xsd +286 -0
  225. metadata +466 -179
  226. data/.travis.yml +0 -23
  227. data/lib/bolognese/crossref.rb +0 -233
  228. data/lib/bolognese/datacite.rb +0 -176
  229. data/lib/bolognese/date_utils.rb +0 -48
  230. data/lib/bolognese/github.rb +0 -106
  231. data/lib/bolognese/orcid.rb +0 -24
  232. data/lib/bolognese/schema_org.rb +0 -170
  233. data/spec/cli_spec.rb +0 -56
  234. data/spec/crossref_spec.rb +0 -190
  235. data/spec/datacite_spec.rb +0 -93
  236. data/spec/datacite_utils_spec.rb +0 -159
  237. data/spec/doi_utils_spec.rb +0 -89
  238. data/spec/fixtures/crossref.xml +0 -742
  239. data/spec/fixtures/datacite.xml +0 -40
  240. data/spec/fixtures/vcr_cassettes/Bolognese_CLI/read/crossref/as_crossref.yml +0 -760
  241. data/spec/fixtures/vcr_cassettes/Bolognese_CLI/read/crossref/as_datacite.yml +0 -1476
  242. data/spec/fixtures/vcr_cassettes/Bolognese_CLI/read/crossref/as_schema_org.yml +0 -1476
  243. data/spec/fixtures/vcr_cassettes/Bolognese_CLI/read/datacite/as_datacite.yml +0 -214
  244. data/spec/fixtures/vcr_cassettes/Bolognese_CLI/read/datacite/as_schema_org.yml +0 -384
  245. data/spec/fixtures/vcr_cassettes/Bolognese_CLI/read/schema_org/as_datacite.yml +0 -653
  246. data/spec/fixtures/vcr_cassettes/Bolognese_CLI/read/schema_org/as_schema_org.yml +0 -653
  247. data/spec/fixtures/vcr_cassettes/Bolognese_Crossref/doi_registration_agency/crossref.yml +0 -971
  248. data/spec/fixtures/vcr_cassettes/Bolognese_Crossref/doi_registration_agency/datacite.yml +0 -971
  249. data/spec/fixtures/vcr_cassettes/Bolognese_Crossref/doi_registration_agency/medra.yml +0 -971
  250. data/spec/fixtures/vcr_cassettes/Bolognese_Crossref/doi_registration_agency/not_found.yml +0 -971
  251. data/spec/fixtures/vcr_cassettes/Bolognese_Crossref/get_metadata/DOI_with_ORCID_ID.yml +0 -506
  252. data/spec/fixtures/vcr_cassettes/Bolognese_Crossref/get_metadata/DOI_with_SICI_DOI.yml +0 -214
  253. data/spec/fixtures/vcr_cassettes/Bolognese_Crossref/get_metadata/DOI_with_data_citation.yml +0 -901
  254. data/spec/fixtures/vcr_cassettes/Bolognese_Crossref/get_metadata/date_in_future.yml +0 -305
  255. data/spec/fixtures/vcr_cassettes/Bolognese_Crossref/get_metadata/journal_article.yml +0 -1080
  256. data/spec/fixtures/vcr_cassettes/Bolognese_Crossref/get_metadata/not_found_error.yml +0 -183
  257. data/spec/fixtures/vcr_cassettes/Bolognese_Crossref/get_metadata/posted_content.yml +0 -389
  258. data/spec/fixtures/vcr_cassettes/Bolognese_Crossref/get_metadata_as_datacite_xml/DOI_with_ORCID_ID.yml +0 -506
  259. data/spec/fixtures/vcr_cassettes/Bolognese_Crossref/get_metadata_as_datacite_xml/DOI_with_data_citation.yml +0 -901
  260. data/spec/fixtures/vcr_cassettes/Bolognese_Crossref/get_metadata_as_datacite_xml/with_ORCID_ID.yml +0 -366
  261. data/spec/fixtures/vcr_cassettes/Bolognese_Crossref/get_metadata_as_datacite_xml/with_data_citation.yml +0 -719
  262. data/spec/fixtures/vcr_cassettes/Bolognese_Crossref/get_metadata_as_datacite_xml/with_editor.yml +0 -930
  263. data/spec/fixtures/vcr_cassettes/Bolognese_Crossref/get_metadata_as_string/DOI_with_data_citation.yml +0 -719
  264. data/spec/fixtures/vcr_cassettes/Bolognese_Crossref/normalize_doi/SICI_doi.yml +0 -930
  265. data/spec/fixtures/vcr_cassettes/Bolognese_Crossref/normalize_doi/doi.yml +0 -930
  266. data/spec/fixtures/vcr_cassettes/Bolognese_Crossref/normalize_doi/doi_from_url_without_doi_proxy.yml +0 -930
  267. data/spec/fixtures/vcr_cassettes/Bolognese_Crossref/normalize_doi/doi_prefix_too_long.yml +0 -930
  268. data/spec/fixtures/vcr_cassettes/Bolognese_Crossref/normalize_doi/doi_prefix_with_string.yml +0 -930
  269. data/spec/fixtures/vcr_cassettes/Bolognese_Crossref/normalize_doi/doi_with_protocol.yml +0 -930
  270. data/spec/fixtures/vcr_cassettes/Bolognese_Crossref/normalize_doi/dx_doi_org_url.yml +0 -930
  271. data/spec/fixtures/vcr_cassettes/Bolognese_Crossref/normalize_doi/https_url.yml +0 -930
  272. data/spec/fixtures/vcr_cassettes/Bolognese_Crossref/normalize_doi/not_valid_doi_prefix.yml +0 -930
  273. data/spec/fixtures/vcr_cassettes/Bolognese_Crossref/normalize_ids/doi.yml +0 -930
  274. data/spec/fixtures/vcr_cassettes/Bolognese_Crossref/normalize_ids/url.yml +0 -930
  275. data/spec/fixtures/vcr_cassettes/Bolognese_Crossref/normalize_url/doi.yml +0 -930
  276. data/spec/fixtures/vcr_cassettes/Bolognese_Crossref/normalize_url/url.yml +0 -930
  277. data/spec/fixtures/vcr_cassettes/Bolognese_Crossref/parse_attribute/array.yml +0 -930
  278. data/spec/fixtures/vcr_cassettes/Bolognese_Crossref/parse_attribute/hash.yml +0 -930
  279. data/spec/fixtures/vcr_cassettes/Bolognese_Crossref/parse_attribute/nil.yml +0 -930
  280. data/spec/fixtures/vcr_cassettes/Bolognese_Crossref/parse_attribute/string.yml +0 -930
  281. data/spec/fixtures/vcr_cassettes/Bolognese_Crossref/parse_attributes/array.yml +0 -930
  282. data/spec/fixtures/vcr_cassettes/Bolognese_Crossref/parse_attributes/hash.yml +0 -930
  283. data/spec/fixtures/vcr_cassettes/Bolognese_Crossref/parse_attributes/nil.yml +0 -930
  284. data/spec/fixtures/vcr_cassettes/Bolognese_Crossref/parse_attributes/string.yml +0 -930
  285. data/spec/fixtures/vcr_cassettes/Bolognese_Crossref/validate_url/DOI.yml +0 -930
  286. data/spec/fixtures/vcr_cassettes/Bolognese_Crossref/validate_url/URL.yml +0 -930
  287. data/spec/fixtures/vcr_cassettes/Bolognese_Crossref/validate_url/string.yml +0 -930
  288. data/spec/fixtures/vcr_cassettes/Bolognese_Datacite/get_metadata/BlogPosting.yml +0 -477
  289. data/spec/fixtures/vcr_cassettes/Bolognese_Datacite/get_metadata/Dataset.yml +0 -1925
  290. data/spec/fixtures/vcr_cassettes/Bolognese_Datacite/get_metadata/Date.yml +0 -458
  291. data/spec/fixtures/vcr_cassettes/Bolognese_Datacite/get_metadata_as_string/Dataset.yml +0 -173
  292. data/spec/fixtures/vcr_cassettes/Bolognese_Datacite/insert_alternate_identifiers/insert.yml +0 -173
  293. data/spec/fixtures/vcr_cassettes/Bolognese_Datacite/insert_contributors/insert.yml +0 -173
  294. data/spec/fixtures/vcr_cassettes/Bolognese_Datacite/insert_contributors/none.yml +0 -173
  295. data/spec/fixtures/vcr_cassettes/Bolognese_Datacite/insert_creators/insert.yml +0 -173
  296. data/spec/fixtures/vcr_cassettes/Bolognese_Datacite/insert_dates/insert.yml +0 -173
  297. data/spec/fixtures/vcr_cassettes/Bolognese_Datacite/insert_descriptions/insert.yml +0 -155
  298. data/spec/fixtures/vcr_cassettes/Bolognese_Datacite/insert_identifier/doi.yml +0 -173
  299. data/spec/fixtures/vcr_cassettes/Bolognese_Datacite/insert_person/creator.yml +0 -173
  300. data/spec/fixtures/vcr_cassettes/Bolognese_Datacite/insert_person/creator_given_and_family_name.yml +0 -173
  301. data/spec/fixtures/vcr_cassettes/Bolognese_Datacite/insert_person/creator_only_name.yml +0 -173
  302. data/spec/fixtures/vcr_cassettes/Bolognese_Datacite/insert_publication_year/insert.yml +0 -173
  303. data/spec/fixtures/vcr_cassettes/Bolognese_Datacite/insert_publisher/insert.yml +0 -173
  304. data/spec/fixtures/vcr_cassettes/Bolognese_Datacite/insert_related_identifiers/get_related_identifier_type.yml +0 -173
  305. data/spec/fixtures/vcr_cassettes/Bolognese_Datacite/insert_related_identifiers/get_related_identifier_type_DOI.yml +0 -173
  306. data/spec/fixtures/vcr_cassettes/Bolognese_Datacite/insert_related_identifiers/get_related_identifier_type_URL.yml +0 -173
  307. data/spec/fixtures/vcr_cassettes/Bolognese_Datacite/insert_related_identifiers/insert.yml +0 -173
  308. data/spec/fixtures/vcr_cassettes/Bolognese_Datacite/insert_related_identifiers/rel_identifiers.yml +0 -173
  309. data/spec/fixtures/vcr_cassettes/Bolognese_Datacite/insert_resource_type/insert.yml +0 -173
  310. data/spec/fixtures/vcr_cassettes/Bolognese_Datacite/insert_rights_list/insert.yml +0 -173
  311. data/spec/fixtures/vcr_cassettes/Bolognese_Datacite/insert_subjects/insert.yml +0 -173
  312. data/spec/fixtures/vcr_cassettes/Bolognese_Datacite/insert_titles/doi.yml +0 -173
  313. data/spec/fixtures/vcr_cassettes/Bolognese_Datacite/insert_titles/insert.yml +0 -173
  314. data/spec/fixtures/vcr_cassettes/Bolognese_Datacite/insert_version/insert.yml +0 -173
  315. data/spec/fixtures/vcr_cassettes/Bolognese_Metadata/find_PID_provider/crossref.yml +0 -44
  316. data/spec/fixtures/vcr_cassettes/Bolognese_Metadata/find_PID_provider/crossref_doi_not_url.yml +0 -44
  317. data/spec/fixtures/vcr_cassettes/Bolognese_Metadata/find_PID_provider/datacite.yml +0 -44
  318. data/spec/fixtures/vcr_cassettes/Bolognese_Metadata/find_PID_provider/datacite_doi_http.yml +0 -44
  319. data/spec/fixtures/vcr_cassettes/Bolognese_Metadata/find_PID_provider/orcid.yml +0 -44
  320. data/spec/fixtures/vcr_cassettes/Bolognese_SchemaOrg/get_metadata/BlogPosting.yml +0 -632
  321. data/spec/fixtures/vcr_cassettes/Bolognese_SchemaOrg/get_metadata/not_found_error.yml +0 -93
  322. data/spec/metadata_spec.rb +0 -41
  323. data/spec/orcid_spec.rb +0 -23
  324. data/spec/schema_org_spec.rb +0 -33
  325. data/spec/spec_helper.rb +0 -88
  326. data/spec/utils_spec.rb +0 -107
@@ -1,170 +0,0 @@
1
- module Bolognese
2
- class SchemaOrg < Metadata
3
-
4
- DC_TO_SO_TRANSLATIONS = {
5
- "Audiovisual" => "VideoObject",
6
- "Collection" => "Collection",
7
- "Dataset" => "Dataset",
8
- "Event" => "Event",
9
- "Image" => "ImageObject",
10
- "InteractiveResource" => nil,
11
- "Model" => nil,
12
- "PhysicalObject" => nil,
13
- "Service" => "Service",
14
- "Software" => "SoftwareSourceCode",
15
- "Sound" => "AudioObject",
16
- "Text" => "ScholarlyArticle",
17
- "Workflow" => nil,
18
- "Other" => "CreativeWork"
19
- }
20
-
21
- attr_reader = :id, :raw, :metadata, :schema_org
22
-
23
- def initialize(id: nil, string: nil)
24
- id = normalize_url(id) if id.present?
25
-
26
- if string.present?
27
- @raw = string
28
- elsif id.present?
29
- response = Maremma.get(id)
30
- @raw = response.body.fetch("data", nil)
31
- end
32
- end
33
-
34
- def metadata
35
- @metadata ||= begin
36
- if raw.present?
37
- doc = Nokogiri::XML(raw)
38
- tag = doc.at_xpath('//script[@type="application/ld+json"]')
39
- Maremma.from_json(tag)
40
- else
41
- {}
42
- end
43
- end
44
- end
45
-
46
- def exists?
47
- metadata.present?
48
- end
49
-
50
- def doi
51
- doi_from_url(id)
52
- end
53
-
54
- def id
55
- normalize_url(metadata.fetch("@id", nil))
56
- end
57
-
58
- def url
59
- normalize_url(metadata.fetch("url", nil))
60
- end
61
-
62
- def type
63
- metadata.fetch("@type", nil)
64
- end
65
-
66
- def additional_type
67
- metadata.fetch("additionalType", nil)
68
- end
69
-
70
- def name
71
- metadata.fetch("name", nil)
72
- end
73
-
74
- def alternate_name
75
- metadata.fetch("alternateName", nil)
76
- end
77
-
78
- def author
79
- Array(metadata.fetch("author", nil)).map { |a| a.except("name") }
80
- end
81
-
82
- def editor
83
- Array(metadata.fetch("editor", nil)).map { |a| a.except("name") }
84
- end
85
-
86
- def description
87
- metadata.fetch("description", nil)
88
- end
89
-
90
- def license
91
- metadata.fetch("license", nil)
92
- end
93
-
94
- def version
95
- metadata.fetch("version", nil)
96
- end
97
-
98
- def keywords
99
- metadata.fetch("keywords", nil)
100
- end
101
-
102
- def date_created
103
- metadata.fetch("dateCreated", nil)
104
- end
105
-
106
- def date_published
107
- metadata.fetch("datePublished", nil)
108
- end
109
-
110
- def date_modified
111
- metadata.fetch("dateModified", nil)
112
- end
113
-
114
- def related_identifiers(relation_type)
115
- normalize_ids(metadata.fetch(relation_type, nil))
116
- end
117
-
118
- def is_part_of
119
- related_identifiers("isPartOf").first
120
- end
121
-
122
- def has_part
123
- related_identifiers("hasPart")
124
- end
125
-
126
- def citation
127
- related_identifiers("citation")
128
- end
129
-
130
- def publisher
131
- metadata.fetch("publisher", nil)
132
- end
133
-
134
- def container_title
135
- if publisher.is_a?(Hash)
136
- publisher.fetch("name", nil)
137
- elsif publisher.is_a?(String)
138
- publisher
139
- end
140
- end
141
-
142
- def provider
143
- metadata.fetch("provider", nil)
144
- end
145
-
146
- def as_schema_org
147
- { "@context" => "http://schema.org",
148
- "@type" => type,
149
- "@id" => id,
150
- "url" => url,
151
- "name" => name,
152
- "alternateName" => alternate_name,
153
- "author" => author,
154
- "editor" => editor,
155
- "description" => description,
156
- "license" => license,
157
- "version" => version,
158
- "keywords" => keywords,
159
- "dateCreated" => date_created,
160
- "datePublished" => date_published,
161
- "dateModified" => date_modified,
162
- "isPartOf" => is_part_of,
163
- "hasPart" => has_part,
164
- "citation" => citation,
165
- "publisher" => publisher,
166
- "provider" => provider
167
- }.compact
168
- end
169
- end
170
- end
data/spec/cli_spec.rb DELETED
@@ -1,56 +0,0 @@
1
- require 'spec_helper'
2
- require 'bolognese/cli'
3
-
4
- describe Bolognese::CLI do
5
- let(:subject) do
6
- described_class.new
7
- end
8
-
9
- describe "read", vcr: true do
10
- context "crossref" do
11
- let(:id) { "10.7554/eLife.01567" }
12
- it 'as schema_org' do
13
- subject.options = { as: "schema_org" }
14
- expect { subject.read id }.to output(/additionalType/).to_stdout
15
- end
16
-
17
- it 'as crossref' do
18
- subject.options = { as: "crossref" }
19
- expect { subject.read id }.to output(/journal_metadata/).to_stdout
20
- end
21
-
22
- it 'as datacite' do
23
- subject.options = { as: "datacite" }
24
- expect { subject.read id }.to output(/http:\/\/datacite.org\/schema\/kernel-4/).to_stdout
25
- end
26
- end
27
-
28
- context "datacite" do
29
- let(:id) { "10.5061/dryad.8515" }
30
-
31
- it 'as schema_org' do
32
- subject.options = { as: "schema_org" }
33
- expect { subject.read id }.to output(/Phylogeny, Malaria, Parasites, Taxonomy, Mitochondrial genome, Africa, Plasmodium/).to_stdout
34
- end
35
-
36
- it 'as datacite' do
37
- subject.options = { as: "datacite" }
38
- expect { subject.read id }.to output(/http:\/\/datacite.org\/schema\/kernel-3/).to_stdout
39
- end
40
- end
41
-
42
- context "schema_org" do
43
- let(:id) { "https://blog.datacite.org/eating-your-own-dog-food" }
44
-
45
- it 'as schema_org' do
46
- subject.options = { as: "schema_org" }
47
- expect { subject.read id }.to output(/datacite, doi, metadata, featured/).to_stdout
48
- end
49
-
50
- it 'as datacite' do
51
- subject.options = { as: "datacite" }
52
- expect { subject.read id }.to output(/http:\/\/datacite.org\/schema\/kernel-4/).to_stdout
53
- end
54
- end
55
- end
56
- end
@@ -1,190 +0,0 @@
1
- require 'spec_helper'
2
-
3
- describe Bolognese::Crossref, vcr: true do
4
- let(:id) { "10.7554/eLife.01567" }
5
-
6
- subject { Bolognese::Crossref.new(id: id) }
7
-
8
- context "get metadata" do
9
- it "DOI with data citation" do
10
- expect(subject.id).to eq("https://doi.org/10.7554/elife.01567")
11
- expect(subject.type).to eq("ScholarlyArticle")
12
- expect(subject.additional_type).to eq("JournalArticle")
13
- expect(subject.author).to eq([{"@type"=>"Person", "givenName"=>"Martial", "familyName"=>"Sankar"},
14
- {"@type"=>"Person", "givenName"=>"Kaisa", "familyName"=>"Nieminen"},
15
- {"@type"=>"Person", "givenName"=>"Laura", "familyName"=>"Ragni"},
16
- {"@type"=>"Person", "givenName"=>"Ioannis", "familyName"=>"Xenarios"},
17
- {"@type"=>"Person", "givenName"=>"Christian S", "familyName"=>"Hardtke"}])
18
- expect(subject.license).to eq("http://creativecommons.org/licenses/by/3.0/")
19
- expect(subject.name).to eq("Automated quantitative histology reveals vascular morphodynamics during Arabidopsis hypocotyl secondary growth")
20
- expect(subject.date_published).to eq("2014-02-11")
21
- expect(subject.date_modified).to eq("2015-08-11T05:35:02Z")
22
- expect(subject.is_part_of).to eq("@type"=>"Periodical", "name"=>"eLife", "issn"=>"2050-084X")
23
- expect(subject.citation.count).to eq(27)
24
- expect(subject.citation[21]).to eq("@type"=>"CreativeWork", "@id"=>"https://doi.org/10.5061/dryad.b835k", "position"=>"22", "datePublished"=>"2014")
25
- expect(subject.provider).to eq("@type"=>"Organization", "name"=>"Crossref")
26
- end
27
-
28
- it "journal article" do
29
- id = "https://doi.org/10.1371/journal.pone.0000030"
30
- subject = Bolognese::Crossref.new(id: id)
31
- expect(subject.id).to eq(id)
32
- expect(subject.type).to eq("ScholarlyArticle")
33
- expect(subject.additional_type).to eq("JournalArticle")
34
- expect(subject.author).to eq([{"@type"=>"Person", "givenName"=>"Markus", "familyName"=>"Ralser"},
35
- {"@type"=>"Person", "givenName"=>"Gino", "familyName"=>"Heeren"},
36
- {"@type"=>"Person", "givenName"=>"Michael", "familyName"=>"Breitenbach"},
37
- {"@type"=>"Person", "givenName"=>"Hans", "familyName"=>"Lehrach"},
38
- {"@type"=>"Person", "givenName"=>"Sylvia", "familyName"=>"Krobitsch"}])
39
- expect(subject.editor).to eq([{"@type"=>"Person", "givenName"=>"Guilhem", "familyName"=>"Janbon"}])
40
- expect(subject.name).to eq("Triose Phosphate Isomerase Deficiency Is Caused by Altered Dimerization–Not Catalytic Inactivity–of the Mutant Enzymes")
41
- expect(subject.license).to eq("http://creativecommons.org/licenses/by/4.0/")
42
- expect(subject.date_published).to eq("2006-12-20")
43
- expect(subject.date_modified).to eq("2016-12-31T21:37:08Z")
44
- expect(subject.page_start).to eq("e30")
45
- expect(subject.is_part_of).to eq("@type"=>"Periodical", "name"=>"PLoS ONE", "issn"=>"1932-6203")
46
- expect(subject.provider).to eq("@type"=>"Organization", "name"=>"Crossref")
47
- end
48
-
49
- it "posted_content" do
50
- id = "https://doi.org/10.1101/097196"
51
- subject = Bolognese::Crossref.new(id: id)
52
- expect(subject.id).to eq(id)
53
- expect(subject.type).to eq("CreativeWork")
54
- expect(subject.additional_type).to eq("PostedContent")
55
- expect(subject.author.count).to eq(10)
56
- expect(subject.author.last).to eq("@type"=>"Person", "@id"=>"http://orcid.org/0000-0003-4060-7360", "givenName"=>"Timothy", "familyName"=>"Clark")
57
- expect(subject.name).to eq("A Data Citation Roadmap for Scholarly Data Repositories")
58
- expect(subject.alternate_name).to eq("biorxiv;097196v1")
59
- expect(subject.description).to start_with("This article presents a practical roadmap")
60
- expect(subject.date_published).to eq("2016-12-28")
61
- expect(subject.date_modified).to eq("2016-12-29T00:10:20Z")
62
- expect(subject.is_part_of).to be_nil
63
- expect(subject.provider).to eq("@type"=>"Organization", "name"=>"Crossref")
64
- end
65
-
66
- it "DOI with SICI DOI" do
67
- id = "https://doi.org/10.1890/0012-9658(2006)87[2832:tiopma]2.0.co;2"
68
- subject = Bolognese::Crossref.new(id: id)
69
- expect(subject.id).to eq("https://doi.org/10.1890/0012-9658(2006)87%5B2832:tiopma%5D2.0.co;2")
70
- expect(subject.type).to eq("ScholarlyArticle")
71
- expect(subject.additional_type).to eq("JournalArticle")
72
- expect(subject.author).to eq([{"@type"=>"Person", "givenName"=>"A.", "familyName"=>"Fenton"}, {"@type"=>"Person", "givenName"=>"S. A.", "familyName"=>"Rands"}])
73
- expect(subject.license).to eq("http://doi.wiley.com/10.1002/tdm_license_1")
74
- expect(subject.name).to eq("THE IMPACT OF PARASITE MANIPULATION AND PREDATOR FORAGING BEHAVIOR ON PREDATOR–PREY COMMUNITIES")
75
- expect(subject.date_published).to eq("2006-11")
76
- expect(subject.date_modified).to eq("2016-10-04T17:20:17Z")
77
- expect(subject.page_start).to eq("2832")
78
- expect(subject.page_end).to eq("2841")
79
- expect(subject.is_part_of).to eq("@type"=>"Periodical", "name"=>"Ecology", "issn"=>"0012-9658")
80
- expect(subject.provider).to eq("@type"=>"Organization", "name"=>"Crossref")
81
- end
82
-
83
- it "DOI with ORCID ID" do
84
- id = "https://doi.org/10.1155/2012/291294"
85
- subject = Bolognese::Crossref.new(id: id)
86
- expect(subject.id).to eq("https://doi.org/10.1155/2012/291294")
87
- expect(subject.type).to eq("ScholarlyArticle")
88
- expect(subject.additional_type).to eq("JournalArticle")
89
- expect(subject.author).to eq([{"@type"=>"Person", "givenName"=>"Wendy", "familyName"=>"Thanassi"},
90
- {"@type"=>"Person", "givenName"=>"Art", "familyName"=>"Noda"},
91
- {"@type"=>"Person",
92
- "@id"=>"http://orcid.org/0000-0003-2043-4925",
93
- "givenName"=>"Beatriz",
94
- "familyName"=>"Hernandez"},
95
- {"@type"=>"Person", "givenName"=>"Jeffery", "familyName"=>"Newell"},
96
- {"@type"=>"Person", "givenName"=>"Paul", "familyName"=>"Terpeluk"},
97
- {"@type"=>"Person", "givenName"=>"David", "familyName"=>"Marder"},
98
- {"@type"=>"Person", "givenName"=>"Jerome A.", "familyName"=>"Yesavage"}])
99
- expect(subject.license).to eq("http://creativecommons.org/licenses/by/3.0/")
100
- expect(subject.name).to eq("Delineating a Retesting Zone Using Receiver Operating Characteristic Analysis on Serial QuantiFERON Tuberculosis Test Results in US Healthcare Workers")
101
- expect(subject.date_published).to eq("2012")
102
- expect(subject.date_modified).to eq("2016-08-02T12:42:41Z")
103
- expect(subject.page_start).to eq("1")
104
- expect(subject.page_end).to eq("7")
105
- expect(subject.is_part_of).to eq("@type"=>"Periodical", "name"=>"Pulmonary Medicine", "issn"=>"2090-1836")
106
- expect(subject.provider).to eq("@type"=>"Organization", "name"=>"Crossref")
107
- end
108
-
109
- it "date in future" do
110
- id = "https://doi.org/10.1016/j.ejphar.2015.03.018"
111
- subject = Bolognese::Crossref.new(id: id)
112
- expect(subject.id).to eq(id)
113
- expect(subject.type).to eq("ScholarlyArticle")
114
- expect(subject.additional_type).to eq("JournalArticle")
115
- expect(subject.author).to eq([{"@type"=>"Person", "givenName"=>"Sarah E.", "familyName"=>"Beck"},
116
- {"@type"=>"Person", "givenName"=>"Suzanne E.", "familyName"=>"Queen"},
117
- {"@type"=>"Person", "givenName"=>"Kenneth W.", "familyName"=>"Witwer"},
118
- {"@type"=>"Person", "givenName"=>"Kelly A.", "familyName"=>"Metcalf Pate"},
119
- {"@type"=>"Person", "givenName"=>"Lisa M.", "familyName"=>"Mangus"},
120
- {"@type"=>"Person", "givenName"=>"Lucio", "familyName"=>"Gama"},
121
- {"@type"=>"Person", "givenName"=>"Robert J.", "familyName"=>"Adams"},
122
- {"@type"=>"Person", "givenName"=>"Janice E.", "familyName"=>"Clements"},
123
- {"@type"=>"Person", "givenName"=>"M.", "familyName"=>"Christine Zink"},
124
- {"@type"=>"Person", "givenName"=>"Joseph L.", "familyName"=>"Mankowski"}])
125
- expect(subject.name).to eq("Paving the path to HIV neurotherapy: Predicting SIV CNS disease")
126
- expect(subject.date_published).to eq("2015-07")
127
- expect(subject.date_modified).to eq("2016-08-20T02:19:38Z")
128
- expect(subject.is_part_of).to eq("@type"=>"Periodical", "name"=>"European Journal of Pharmacology", "issn"=>"00142999")
129
- expect(subject.provider).to eq("@type"=>"Organization", "name"=>"Crossref")
130
- end
131
-
132
- it "not found error" do
133
- id = "https://doi.org/10.7554/elife.01567x"
134
- subject = Bolognese::Crossref.new(id: id)
135
- expect(subject.id).to be_nil
136
- expect(subject.exists?).to be false
137
- end
138
- end
139
-
140
- context "get metadata as string" do
141
- it "DOI with data citation" do
142
- id = "10.7554/eLife.01567"
143
- string = Bolognese::Crossref.new(id: id).raw
144
-
145
- subject = Bolognese::Crossref.new(string: string)
146
- expect(subject.id).to eq("https://doi.org/10.7554/elife.01567")
147
- expect(subject.type).to eq("ScholarlyArticle")
148
- expect(subject.additional_type).to eq("JournalArticle")
149
- expect(subject.author).to eq([{"@type"=>"Person", "givenName"=>"Martial", "familyName"=>"Sankar"},
150
- {"@type"=>"Person", "givenName"=>"Kaisa", "familyName"=>"Nieminen"},
151
- {"@type"=>"Person", "givenName"=>"Laura", "familyName"=>"Ragni"},
152
- {"@type"=>"Person", "givenName"=>"Ioannis", "familyName"=>"Xenarios"},
153
- {"@type"=>"Person", "givenName"=>"Christian S", "familyName"=>"Hardtke"}])
154
- expect(subject.license).to eq("http://creativecommons.org/licenses/by/3.0/")
155
- expect(subject.name).to eq("Automated quantitative histology reveals vascular morphodynamics during Arabidopsis hypocotyl secondary growth")
156
- expect(subject.date_published).to eq("2014-02-11")
157
- expect(subject.date_modified).to eq("2015-08-11T05:35:02Z")
158
- expect(subject.is_part_of).to eq("@type"=>"Periodical", "name"=>"eLife", "issn"=>"2050-084X")
159
- expect(subject.citation.count).to eq(27)
160
- expect(subject.citation[21]).to eq("@type"=>"CreativeWork", "@id"=>"https://doi.org/10.5061/dryad.b835k", "position"=>"22", "datePublished"=>"2014")
161
- expect(subject.provider).to eq("@type"=>"Organization", "name"=>"Crossref")
162
- end
163
- end
164
-
165
- context "get metadata as datacite xml" do
166
- it "with data citation" do
167
- expect(subject.validation_errors).to be_empty
168
- datacite = Maremma.from_xml(subject.as_datacite).fetch("resource", {})
169
- expect(datacite.dig("titles", "title")).to eq("Automated quantitative histology reveals vascular morphodynamics during Arabidopsis hypocotyl secondary growth")
170
- expect(datacite.dig("relatedIdentifiers", "relatedIdentifier").count).to eq(25)
171
- end
172
-
173
- it "with ORCID ID" do
174
- id = "https://doi.org/10.1155/2012/291294"
175
- subject = Bolognese::Crossref.new(id: id)
176
- expect(subject.validation_errors).to be_empty
177
- datacite = Maremma.from_xml(subject.as_datacite).fetch("resource", {})
178
- expect(datacite.dig("creators", "creator").count).to eq(7)
179
- expect(datacite.dig("creators", "creator").first).to eq("creatorName"=>"Thanassi, Wendy", "givenName"=>"Wendy", "familyName"=>"Thanassi")
180
- end
181
-
182
- it "with editor" do
183
- id = "https://doi.org/10.1371/journal.pone.0000030"
184
- subject = Bolognese::Crossref.new(id: id)
185
- expect(subject.validation_errors).to be_empty
186
- datacite = Maremma.from_xml(subject.as_datacite).fetch("resource", {})
187
- expect(datacite.dig("contributors", "contributor")).to eq("contributorType"=>"Editor", "contributorName"=>"Janbon, Guilhem", "givenName"=>"Guilhem", "familyName"=>"Janbon")
188
- end
189
- end
190
- end
@@ -1,93 +0,0 @@
1
- require 'spec_helper'
2
-
3
- describe Bolognese::Datacite, vcr: true do
4
- context "get metadata" do
5
- let(:id) { "https://doi.org/10.5061/DRYAD.8515" }
6
-
7
- subject { Bolognese::Datacite.new(id: id) }
8
-
9
- it "Dataset" do
10
- expect(subject.id).to eq("https://doi.org/10.5061/dryad.8515")
11
- expect(subject.type).to eq("Dataset")
12
- expect(subject.additional_type).to eq("DataPackage")
13
- expect(subject.author).to eq([{"@type"=>"Person", "givenName"=>"Benjamin", "familyName"=>"Ollomo"},
14
- {"@type"=>"Person", "givenName"=>"Patrick", "familyName"=>"Durand"},
15
- {"@type"=>"Person", "givenName"=>"Franck", "familyName"=>"Prugnolle"},
16
- {"@type"=>"Person", "givenName"=>"Emmanuel J. P.", "familyName"=>"Douzery"},
17
- {"@type"=>"Person", "givenName"=>"Céline", "familyName"=>"Arnathau"},
18
- {"@type"=>"Person", "givenName"=>"Dieudonné", "familyName"=>"Nkoghe"},
19
- {"@type"=>"Person", "givenName"=>"Eric", "familyName"=>"Leroy"},
20
- {"@type"=>"Person", "givenName"=>"François", "familyName"=>"Renaud"}])
21
- expect(subject.name).to eq("Data from: A new malaria agent in African hominids.")
22
- expect(subject.alternate_name).to eq("Ollomo B, Durand P, Prugnolle F, Douzery EJP, Arnathau C, Nkoghe D, Leroy E, Renaud F (2009) A new malaria agent in African hominids. PLoS Pathogens 5(5): e1000446.")
23
- expect(subject.license).to eq("http://creativecommons.org/publicdomain/zero/1.0/")
24
- expect(subject.date_published).to eq("2011")
25
- expect(subject.has_part).to eq([{"@type"=>"CreativeWork", "@id"=>"https://doi.org/10.5061/dryad.8515/1"},
26
- {"@type"=>"CreativeWork", "@id"=>"https://doi.org/10.5061/dryad.8515/2"}])
27
- expect(subject.citation).to eq([{"@type"=>"CreativeWork", "@id"=>"https://doi.org/10.1371/journal.ppat.1000446"}])
28
- expect(subject.publisher).to eq("@type"=>"Organization", "name"=>"Dryad Digital Repository")
29
- expect(subject.provider).to eq("@type"=>"Organization", "name"=>"DataCite")
30
- end
31
-
32
- it "BlogPosting" do
33
- id = "https://doi.org/10.5438/4K3M-NYVG"
34
- subject = Bolognese::Datacite.new(id: id)
35
- expect(subject.id).to eq("https://doi.org/10.5438/4k3m-nyvg")
36
- expect(subject.type).to eq("ScholarlyArticle")
37
- expect(subject.additional_type).to eq("BlogPosting")
38
- expect(subject.author).to eq([{"@type"=>"Person", "@id"=>"http://orcid.org/0000-0003-1419-2405", "givenName"=>"Martin", "familyName"=>"Fenner"}])
39
- expect(subject.name).to eq("Eating your own Dog Food")
40
- expect(subject.alternate_name).to eq("MS-49-3632-5083")
41
- expect(subject.description).to start_with("Eating your own dog food")
42
- expect(subject.date_published).to eq("2016-12-20")
43
- expect(subject.date_modified).to eq("2016-12-20")
44
- expect(subject.is_part_of).to eq("@type"=>"CreativeWork", "@id"=>"https://doi.org/10.5438/0000-00ss")
45
- expect(subject.citation).to eq([{"@type"=>"CreativeWork", "@id"=>"https://doi.org/10.5438/0012"},
46
- {"@type"=>"CreativeWork", "@id"=>"https://doi.org/10.5438/55e5-t5c0"}])
47
- expect(subject.publisher).to eq("@type"=>"Organization", "name"=>"DataCite")
48
- expect(subject.provider).to eq("@type"=>"Organization", "name"=>"DataCite")
49
- end
50
-
51
- it "Date" do
52
- id = "https://doi.org/10.4230/lipics.tqc.2013.93"
53
- subject = Bolognese::Datacite.new(id: id)
54
- expect(subject.id).to eq("https://doi.org/10.4230/lipics.tqc.2013.93")
55
- expect(subject.type).to eq("ScholarlyArticle")
56
- expect(subject.additional_type).to eq("ConferencePaper")
57
- expect(subject.author).to eq([{"@type"=>"Person", "givenName"=>"Nathaniel", "familyName"=>"Johnston"}])
58
- expect(subject.name).to eq("The Minimum Size of Qubit Unextendible Product Bases")
59
- expect(subject.description).to start_with("We investigate the problem of constructing unextendible product bases in the qubit case")
60
- expect(subject.date_published).to eq("2013")
61
- expect(subject.publisher).to eq("@type"=>"Organization", "name"=>"Schloss Dagstuhl - Leibniz-Zentrum fuer Informatik GmbH, Wadern/Saarbruecken, Germany")
62
- expect(subject.provider).to eq("@type"=>"Organization", "name"=>"DataCite")
63
- end
64
- end
65
-
66
- context "get metadata as string" do
67
- it "Dataset" do
68
- id = "https://doi.org/10.5061/DRYAD.8515"
69
- string = Bolognese::Datacite.new(id: id).raw
70
-
71
- subject = Bolognese::Datacite.new(string: string)
72
- expect(subject.id).to eq("https://doi.org/10.5061/dryad.8515")
73
- expect(subject.type).to eq("Dataset")
74
- expect(subject.additional_type).to eq("DataPackage")
75
- expect(subject.author).to eq([{"@type"=>"Person", "givenName"=>"Benjamin", "familyName"=>"Ollomo"},
76
- {"@type"=>"Person", "givenName"=>"Patrick", "familyName"=>"Durand"},
77
- {"@type"=>"Person", "givenName"=>"Franck", "familyName"=>"Prugnolle"},
78
- {"@type"=>"Person", "givenName"=>"Emmanuel J. P.", "familyName"=>"Douzery"},
79
- {"@type"=>"Person", "givenName"=>"Céline", "familyName"=>"Arnathau"},
80
- {"@type"=>"Person", "givenName"=>"Dieudonné", "familyName"=>"Nkoghe"},
81
- {"@type"=>"Person", "givenName"=>"Eric", "familyName"=>"Leroy"},
82
- {"@type"=>"Person", "givenName"=>"François", "familyName"=>"Renaud"}])
83
- expect(subject.name).to eq("Data from: A new malaria agent in African hominids.")
84
- expect(subject.alternate_name).to eq("Ollomo B, Durand P, Prugnolle F, Douzery EJP, Arnathau C, Nkoghe D, Leroy E, Renaud F (2009) A new malaria agent in African hominids. PLoS Pathogens 5(5): e1000446.")
85
- expect(subject.license).to eq("http://creativecommons.org/publicdomain/zero/1.0/")
86
- expect(subject.date_published).to eq("2011")
87
- expect(subject.has_part).to eq([{"@type"=>"CreativeWork", "@id"=>"https://doi.org/10.5061/dryad.8515/1"},
88
- {"@type"=>"CreativeWork", "@id"=>"https://doi.org/10.5061/dryad.8515/2"}])
89
- expect(subject.citation).to eq([{"@type"=>"CreativeWork", "@id"=>"https://doi.org/10.1371/journal.ppat.1000446"}])
90
- expect(subject.provider).to eq("@type"=>"Organization", "name"=>"DataCite")
91
- end
92
- end
93
- end