bolognese 0.2.2 → 2.7.0

This diff represents the content of publicly available package versions that have been released to one of the supported registries. The information contained in this diff is provided for informational purposes only and reflects changes between package versions as they appear in their respective public registries.
Files changed (264) hide show
  1. checksums.yaml +5 -5
  2. data/.github/workflows/build.yml +9 -0
  3. data/.github/workflows/changelog.yml +36 -0
  4. data/.github/workflows/ci.yml +22 -0
  5. data/.github/workflows/pull-request.yml +9 -0
  6. data/.github/workflows/release.yml +32 -0
  7. data/.gitignore +4 -0
  8. data/.rubocop.yml +658 -0
  9. data/CHANGELOG.md +1864 -0
  10. data/CITATION +17 -0
  11. data/Gemfile +1 -1
  12. data/Gemfile.lock +251 -99
  13. data/README.md +1026 -2
  14. data/Rakefile +1 -0
  15. data/bin/bolognese +5 -1
  16. data/bolognese.gemspec +33 -21
  17. data/lib/bolognese/array.rb +13 -0
  18. data/lib/bolognese/author_utils.rb +115 -39
  19. data/lib/bolognese/citeproc_extensions.rb +48 -0
  20. data/lib/bolognese/cli.rb +28 -15
  21. data/lib/bolognese/datacite_utils.rb +418 -0
  22. data/lib/bolognese/doi_utils.rb +45 -23
  23. data/lib/bolognese/metadata.rb +250 -18
  24. data/lib/bolognese/metadata_utils.rb +228 -0
  25. data/lib/bolognese/pubmed.rb +2 -0
  26. data/lib/bolognese/readers/bibtex_reader.rb +100 -0
  27. data/lib/bolognese/readers/citeproc_reader.rb +125 -0
  28. data/lib/bolognese/readers/codemeta_reader.rb +108 -0
  29. data/lib/bolognese/readers/crosscite_reader.rb +17 -0
  30. data/lib/bolognese/readers/crossref_reader.rb +413 -0
  31. data/lib/bolognese/readers/datacite_json_reader.rb +17 -0
  32. data/lib/bolognese/readers/datacite_reader.rb +338 -0
  33. data/lib/bolognese/readers/npm_reader.rb +115 -0
  34. data/lib/bolognese/readers/ris_reader.rb +114 -0
  35. data/lib/bolognese/readers/schema_org_reader.rb +264 -0
  36. data/lib/bolognese/string.rb +3 -1
  37. data/lib/bolognese/utils.rb +1403 -12
  38. data/lib/bolognese/version.rb +1 -1
  39. data/lib/bolognese/whitelist_scrubber.rb +47 -0
  40. data/lib/bolognese/writers/bibtex_writer.rb +32 -0
  41. data/lib/bolognese/writers/citation_writer.rb +14 -0
  42. data/lib/bolognese/writers/citeproc_writer.rb +11 -0
  43. data/lib/bolognese/writers/codemeta_writer.rb +29 -0
  44. data/lib/bolognese/writers/crosscite_writer.rb +11 -0
  45. data/lib/bolognese/writers/crossref_writer.rb +11 -0
  46. data/lib/bolognese/writers/csv_writer.rb +24 -0
  47. data/lib/bolognese/writers/datacite_json_writer.rb +13 -0
  48. data/lib/bolognese/writers/datacite_writer.rb +12 -0
  49. data/lib/bolognese/writers/jats_writer.rb +138 -0
  50. data/lib/bolognese/writers/rdf_xml_writer.rb +11 -0
  51. data/lib/bolognese/writers/ris_writer.rb +29 -0
  52. data/lib/bolognese/writers/schema_org_writer.rb +55 -0
  53. data/lib/bolognese/writers/turtle_writer.rb +11 -0
  54. data/lib/bolognese.rb +19 -4
  55. data/package.json +12 -0
  56. data/resources/2008/09/xsd.xsl +997 -0
  57. data/resources/datacite-contributorType-v4.xsd +35 -0
  58. data/resources/datacite-dateType-v4.xsd +25 -0
  59. data/resources/datacite-descriptionType-v4.xsd +19 -0
  60. data/resources/datacite-funderIdentifierType-v4.xsd +15 -0
  61. data/resources/datacite-nameType-v4.xsd +10 -0
  62. data/resources/datacite-relatedIdentifierType-v4.xsd +34 -0
  63. data/resources/datacite-relationType-v4.xsd +49 -0
  64. data/resources/datacite-resourceType-v4.xsd +28 -0
  65. data/resources/datacite-titleType-v4.xsd +14 -0
  66. data/resources/kernel-2.1/include/datacite-contributorType-v1.1.xsd +22 -0
  67. data/resources/kernel-2.1/include/datacite-contributorType-v2.xsd +3 -0
  68. data/resources/kernel-2.1/include/datacite-dateType-v1.1.xsd +31 -0
  69. data/resources/kernel-2.1/include/datacite-dateType-v2.xsd +3 -0
  70. data/resources/kernel-2.1/include/datacite-descriptionType-v1.1.xsd +14 -0
  71. data/resources/kernel-2.1/include/datacite-descriptionType-v2.xsd +3 -0
  72. data/resources/kernel-2.1/include/datacite-relatedIdentifierType-v1.1.xsd +24 -0
  73. data/resources/kernel-2.1/include/datacite-relatedIdentifierType-v2.xsd +3 -0
  74. data/resources/kernel-2.1/include/datacite-relationType-v1.1.xsd +29 -0
  75. data/resources/kernel-2.1/include/datacite-relationType-v2.xsd +3 -0
  76. data/resources/kernel-2.1/include/datacite-resourceType-v1.1.xsd +22 -0
  77. data/resources/kernel-2.1/include/datacite-resourceType-v2.xsd +3 -0
  78. data/resources/kernel-2.1/include/datacite-titleType-v1.1.xsd +11 -0
  79. data/resources/kernel-2.1/include/datacite-titleType-v2.xsd +3 -0
  80. data/resources/kernel-2.1/metadata.xsd +315 -0
  81. data/resources/kernel-2.2/include/datacite-contributorType-v2.xsd +29 -0
  82. data/resources/kernel-2.2/include/datacite-dateType-v2.xsd +21 -0
  83. data/resources/kernel-2.2/include/datacite-descriptionType-v2.xsd +15 -0
  84. data/resources/kernel-2.2/include/datacite-relatedIdentifierType-v2.xsd +25 -0
  85. data/resources/kernel-2.2/include/datacite-relationType-v2.xsd +29 -0
  86. data/resources/kernel-2.2/include/datacite-resourceType-v2.xsd +23 -0
  87. data/resources/kernel-2.2/include/datacite-titleType-v2.xsd +10 -0
  88. data/resources/kernel-2.2/metadata.xsd +316 -0
  89. data/resources/kernel-3/include/datacite-contributorType-v3.1.xsd +35 -0
  90. data/resources/kernel-3/include/datacite-dateType-v3.xsd +21 -0
  91. data/resources/kernel-3/include/datacite-descriptionType-v3.xsd +17 -0
  92. data/resources/kernel-3/include/datacite-relatedIdentifierType-v3.1.xsd +30 -0
  93. data/resources/kernel-3/include/datacite-relationType-v3.1.xsd +38 -0
  94. data/resources/kernel-3/include/datacite-resourceType-v3.xsd +26 -0
  95. data/resources/kernel-3/include/datacite-titleType-v3.xsd +12 -0
  96. data/resources/kernel-3/include/xml.xsd +286 -0
  97. data/resources/kernel-3/metadata.xsd +380 -0
  98. data/resources/kernel-3.0/include/datacite-contributorType-v3.xsd +33 -0
  99. data/resources/kernel-3.0/include/datacite-dateType-v3.xsd +21 -0
  100. data/resources/kernel-3.0/include/datacite-descriptionType-v3.xsd +17 -0
  101. data/resources/kernel-3.0/include/datacite-relatedIdentifierType-v3.xsd +27 -0
  102. data/resources/kernel-3.0/include/datacite-relationType-v3.xsd +33 -0
  103. data/resources/kernel-3.0/include/datacite-resourceType-v3.xsd +26 -0
  104. data/resources/kernel-3.0/include/datacite-titleType-v3.xsd +12 -0
  105. data/resources/kernel-3.0/include/xml.xsd +286 -0
  106. data/resources/kernel-3.0/metadata.xsd +377 -0
  107. data/resources/kernel-3.1/include/datacite-contributorType-v3.1.xsd +35 -0
  108. data/resources/kernel-3.1/include/datacite-dateType-v3.xsd +21 -0
  109. data/resources/kernel-3.1/include/datacite-descriptionType-v3.xsd +17 -0
  110. data/resources/kernel-3.1/include/datacite-relatedIdentifierType-v3.1.xsd +30 -0
  111. data/resources/kernel-3.1/include/datacite-relationType-v3.1.xsd +38 -0
  112. data/resources/kernel-3.1/include/datacite-resourceType-v3.xsd +26 -0
  113. data/resources/kernel-3.1/include/datacite-titleType-v3.xsd +12 -0
  114. data/resources/kernel-3.1/include/xml.xsd +286 -0
  115. data/resources/kernel-3.1/metadata.xsd +380 -0
  116. data/resources/kernel-4/include/datacite-contributorType-v4.xsd +37 -0
  117. data/resources/kernel-4/include/datacite-dateType-v4.xsd +27 -0
  118. data/resources/kernel-4/include/datacite-descriptionType-v4.xsd +19 -0
  119. data/resources/kernel-4/include/datacite-funderIdentifierType-v4.xsd +16 -0
  120. data/resources/kernel-4/include/datacite-nameType-v4.xsd +10 -0
  121. data/resources/kernel-4/include/datacite-numberType-v4.xsd +12 -0
  122. data/resources/kernel-4/include/datacite-relatedIdentifierType-v4.xsd +39 -0
  123. data/resources/kernel-4/include/datacite-relationType-v4.xsd +59 -0
  124. data/resources/kernel-4/include/datacite-resourceType-v4.xsd +52 -0
  125. data/resources/kernel-4/include/datacite-titleType-v4.xsd +14 -0
  126. data/resources/kernel-4/include/xml.xsd +286 -0
  127. data/resources/kernel-4/metadata.xsd +715 -0
  128. data/resources/kernel-4.0/include/datacite-contributorType-v4.xsd +35 -0
  129. data/resources/kernel-4.0/include/datacite-dateType-v4.xsd +21 -0
  130. data/resources/kernel-4.0/include/datacite-descriptionType-v4.xsd +19 -0
  131. data/resources/kernel-4.0/include/datacite-funderIdentifierType-v4.xsd +15 -0
  132. data/resources/kernel-4.0/include/datacite-relatedIdentifierType-v4.xsd +32 -0
  133. data/resources/kernel-4.0/include/datacite-relationType-v4.xsd +39 -0
  134. data/resources/kernel-4.0/include/datacite-resourceType-v4.xsd +26 -0
  135. data/resources/kernel-4.0/include/datacite-titleType-v4.xsd +14 -0
  136. data/resources/kernel-4.0/include/xml.xsd +286 -0
  137. data/resources/kernel-4.0/metadata.xsd +470 -0
  138. data/resources/kernel-4.1/include/datacite-contributorType-v4.xsd +35 -0
  139. data/resources/kernel-4.1/include/datacite-dateType-v4.1.xsd +23 -0
  140. data/resources/kernel-4.1/include/datacite-descriptionType-v4.xsd +19 -0
  141. data/resources/kernel-4.1/include/datacite-funderIdentifierType-v4.xsd +15 -0
  142. data/resources/kernel-4.1/include/datacite-nameType-v4.1.xsd +10 -0
  143. data/resources/kernel-4.1/include/datacite-relatedIdentifierType-v4.xsd +32 -0
  144. data/resources/kernel-4.1/include/datacite-relationType-v4.1.xsd +46 -0
  145. data/resources/kernel-4.1/include/datacite-resourceType-v4.1.xsd +28 -0
  146. data/resources/kernel-4.1/include/datacite-titleType-v4.xsd +14 -0
  147. data/resources/kernel-4.1/include/xml.xsd +286 -0
  148. data/resources/kernel-4.1/metadata.xsd +483 -0
  149. data/resources/kernel-4.2/include/datacite-contributorType-v4.xsd +35 -0
  150. data/resources/kernel-4.2/include/datacite-dateType-v4.xsd +25 -0
  151. data/resources/kernel-4.2/include/datacite-descriptionType-v4.xsd +19 -0
  152. data/resources/kernel-4.2/include/datacite-funderIdentifierType-v4.xsd +15 -0
  153. data/resources/kernel-4.2/include/datacite-nameType-v4.xsd +10 -0
  154. data/resources/kernel-4.2/include/datacite-relatedIdentifierType-v4.xsd +34 -0
  155. data/resources/kernel-4.2/include/datacite-relationType-v4.xsd +49 -0
  156. data/resources/kernel-4.2/include/datacite-resourceType-v4.xsd +28 -0
  157. data/resources/kernel-4.2/include/datacite-titleType-v4.xsd +14 -0
  158. data/resources/kernel-4.2/include/xml.xsd +286 -0
  159. data/resources/kernel-4.2/metadata.xsd +479 -0
  160. data/resources/kernel-4.3/include/datacite-contributorType-v4.xsd +35 -0
  161. data/resources/kernel-4.3/include/datacite-dateType-v4.xsd +25 -0
  162. data/resources/kernel-4.3/include/datacite-descriptionType-v4.xsd +19 -0
  163. data/resources/kernel-4.3/include/datacite-funderIdentifierType-v4.xsd +16 -0
  164. data/resources/kernel-4.3/include/datacite-nameType-v4.xsd +10 -0
  165. data/resources/kernel-4.3/include/datacite-relatedIdentifierType-v4.xsd +34 -0
  166. data/resources/kernel-4.3/include/datacite-relationType-v4.xsd +49 -0
  167. data/resources/kernel-4.3/include/datacite-resourceType-v4.xsd +28 -0
  168. data/resources/kernel-4.3/include/datacite-titleType-v4.xsd +14 -0
  169. data/resources/kernel-4.3/include/xml.xsd +286 -0
  170. data/resources/kernel-4.3/metadata.xsd +515 -0
  171. data/resources/kernel-4.4/include/datacite-contributorType-v4.xsd +35 -0
  172. data/resources/kernel-4.4/include/datacite-dateType-v4.xsd +25 -0
  173. data/resources/kernel-4.4/include/datacite-descriptionType-v4.xsd +19 -0
  174. data/resources/kernel-4.4/include/datacite-funderIdentifierType-v4.xsd +16 -0
  175. data/resources/kernel-4.4/include/datacite-nameType-v4.xsd +10 -0
  176. data/resources/kernel-4.4/include/datacite-numberType-v4.xsd +12 -0
  177. data/resources/kernel-4.4/include/datacite-relatedIdentifierType-v4.xsd +34 -0
  178. data/resources/kernel-4.4/include/datacite-relationType-v4.xsd +51 -0
  179. data/resources/kernel-4.4/include/datacite-resourceType-v4.xsd +43 -0
  180. data/resources/kernel-4.4/include/datacite-titleType-v4.xsd +14 -0
  181. data/resources/kernel-4.4/include/xml.xsd +286 -0
  182. data/resources/kernel-4.4/metadata.xsd +707 -0
  183. data/resources/kernel-4.5/include/datacite-contributorType-v4.xsd +35 -0
  184. data/resources/kernel-4.5/include/datacite-dateType-v4.xsd +25 -0
  185. data/resources/kernel-4.5/include/datacite-descriptionType-v4.xsd +19 -0
  186. data/resources/kernel-4.5/include/datacite-funderIdentifierType-v4.xsd +16 -0
  187. data/resources/kernel-4.5/include/datacite-nameType-v4.xsd +10 -0
  188. data/resources/kernel-4.5/include/datacite-numberType-v4.xsd +12 -0
  189. data/resources/kernel-4.5/include/datacite-relatedIdentifierType-v4.xsd +34 -0
  190. data/resources/kernel-4.5/include/datacite-relationType-v4.xsd +53 -0
  191. data/resources/kernel-4.5/include/datacite-resourceType-v4.xsd +45 -0
  192. data/resources/kernel-4.5/include/datacite-titleType-v4.xsd +14 -0
  193. data/resources/kernel-4.5/include/xml.xsd +286 -0
  194. data/resources/kernel-4.5/metadata.xsd +711 -0
  195. data/resources/kernel-4.6/include/datacite-contributorType-v4.xsd +37 -0
  196. data/resources/kernel-4.6/include/datacite-dateType-v4.xsd +27 -0
  197. data/resources/kernel-4.6/include/datacite-descriptionType-v4.xsd +19 -0
  198. data/resources/kernel-4.6/include/datacite-funderIdentifierType-v4.xsd +16 -0
  199. data/resources/kernel-4.6/include/datacite-nameType-v4.xsd +10 -0
  200. data/resources/kernel-4.6/include/datacite-numberType-v4.xsd +12 -0
  201. data/resources/kernel-4.6/include/datacite-relatedIdentifierType-v4.xsd +37 -0
  202. data/resources/kernel-4.6/include/datacite-relationType-v4.xsd +57 -0
  203. data/resources/kernel-4.6/include/datacite-resourceType-v4.xsd +49 -0
  204. data/resources/kernel-4.6/include/datacite-titleType-v4.xsd +14 -0
  205. data/resources/kernel-4.6/include/xml.xsd +286 -0
  206. data/resources/kernel-4.6/metadata.xsd +712 -0
  207. data/resources/kernel-4.7/include/datacite-contributorType-v4.xsd +37 -0
  208. data/resources/kernel-4.7/include/datacite-dateType-v4.xsd +27 -0
  209. data/resources/kernel-4.7/include/datacite-descriptionType-v4.xsd +19 -0
  210. data/resources/kernel-4.7/include/datacite-funderIdentifierType-v4.xsd +16 -0
  211. data/resources/kernel-4.7/include/datacite-nameType-v4.xsd +10 -0
  212. data/resources/kernel-4.7/include/datacite-numberType-v4.xsd +12 -0
  213. data/resources/kernel-4.7/include/datacite-relatedIdentifierType-v4.xsd +39 -0
  214. data/resources/kernel-4.7/include/datacite-relationType-v4.xsd +59 -0
  215. data/resources/kernel-4.7/include/datacite-resourceType-v4.xsd +52 -0
  216. data/resources/kernel-4.7/include/datacite-titleType-v4.xsd +14 -0
  217. data/resources/kernel-4.7/include/xml.xsd +286 -0
  218. data/resources/kernel-4.7/metadata.xsd +715 -0
  219. data/resources/oecd/dfg-mappings.json +1866 -0
  220. data/resources/oecd/for-mappings.json +1101 -0
  221. data/resources/oecd/fos-mappings.json +198 -0
  222. data/resources/schema_org/jsonldcontext.json +7477 -0
  223. data/resources/spdx/licenses.json +5297 -0
  224. data/resources/xml.xsd +286 -0
  225. metadata +478 -150
  226. data/.travis.yml +0 -23
  227. data/lib/bolognese/crossref.rb +0 -202
  228. data/lib/bolognese/datacite.rb +0 -157
  229. data/lib/bolognese/date_utils.rb +0 -48
  230. data/lib/bolognese/github.rb +0 -106
  231. data/lib/bolognese/orcid.rb +0 -24
  232. data/lib/bolognese/pid_utils.rb +0 -23
  233. data/spec/cli_spec.rb +0 -37
  234. data/spec/crossref_spec.rb +0 -113
  235. data/spec/datacite_spec.rb +0 -49
  236. data/spec/doi_spec.rb +0 -89
  237. data/spec/fixtures/crossref.xml +0 -742
  238. data/spec/fixtures/datacite.xml +0 -40
  239. data/spec/fixtures/vcr_cassettes/Bolognese_CLI/read/crossref/as_crossref.yml +0 -760
  240. data/spec/fixtures/vcr_cassettes/Bolognese_CLI/read/crossref/as_schema_org.yml +0 -1476
  241. data/spec/fixtures/vcr_cassettes/Bolognese_CLI/read/datacite/as_datacite.yml +0 -214
  242. data/spec/fixtures/vcr_cassettes/Bolognese_CLI/read/datacite/as_schema_org.yml +0 -384
  243. data/spec/fixtures/vcr_cassettes/Bolognese_Crossref/doi_registration_agency/crossref.yml +0 -44
  244. data/spec/fixtures/vcr_cassettes/Bolognese_Crossref/doi_registration_agency/datacite.yml +0 -44
  245. data/spec/fixtures/vcr_cassettes/Bolognese_Crossref/doi_registration_agency/medra.yml +0 -44
  246. data/spec/fixtures/vcr_cassettes/Bolognese_Crossref/doi_registration_agency/not_found.yml +0 -44
  247. data/spec/fixtures/vcr_cassettes/Bolognese_Crossref/get_metadata/DOI_test.yml +0 -843
  248. data/spec/fixtures/vcr_cassettes/Bolognese_Crossref/get_metadata/DOI_with_SICI_DOI.yml +0 -277
  249. data/spec/fixtures/vcr_cassettes/Bolognese_Crossref/get_metadata/DOI_with_data_citation.yml +0 -15755
  250. data/spec/fixtures/vcr_cassettes/Bolognese_Crossref/get_metadata/date_in_future.yml +0 -2691
  251. data/spec/fixtures/vcr_cassettes/Bolognese_Crossref/get_metadata/journal_article.yml +0 -1857
  252. data/spec/fixtures/vcr_cassettes/Bolognese_Crossref/get_metadata/not_found_error.yml +0 -93
  253. data/spec/fixtures/vcr_cassettes/Bolognese_Crossref/get_metadata/posted_content.yml +0 -5715
  254. data/spec/fixtures/vcr_cassettes/Bolognese_Datacite/get_metadata/BlogPosting.yml +0 -307
  255. data/spec/fixtures/vcr_cassettes/Bolognese_Datacite/get_metadata/Dataset.yml +0 -343
  256. data/spec/fixtures/vcr_cassettes/Bolognese_Metadata/find_PID_provider/crossref.yml +0 -44
  257. data/spec/fixtures/vcr_cassettes/Bolognese_Metadata/find_PID_provider/crossref_doi_not_url.yml +0 -44
  258. data/spec/fixtures/vcr_cassettes/Bolognese_Metadata/find_PID_provider/datacite.yml +0 -44
  259. data/spec/fixtures/vcr_cassettes/Bolognese_Metadata/find_PID_provider/datacite_doi_http.yml +0 -44
  260. data/spec/fixtures/vcr_cassettes/Bolognese_Metadata/find_PID_provider/orcid.yml +0 -44
  261. data/spec/metadata_spec.rb +0 -35
  262. data/spec/orcid_spec.rb +0 -23
  263. data/spec/spec_helper.rb +0 -88
  264. /data/{LICENSE → LICENSE.md} +0 -0
data/spec/fixtures/vcr_cassettes/Bolognese_CLI/read/datacite/as_datacite.yml DELETED
@@ -1,214 +0,0 @@
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- ---
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- http_interactions:
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- - request:
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- method: get
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- uri: https://doi.crossref.org/doiRA/10.5061/DRYAD.8515
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- body:
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- encoding: US-ASCII
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- string: ''
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- headers:
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- User-Agent:
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- - Maremma - https://github.com/datacite/maremma
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- Accept:
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- - text/html,application/json,application/xml;q=0.9, text/plain;q=0.8,image/png,*/*;q=0.5
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- response:
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- status:
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- code: 200
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- message: ''
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- headers:
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- Server:
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- - Apache-Coyote/1.1
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- Crossref-Deployment-Name:
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- - svc1-1
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- Content-Type:
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- - application/json;charset=UTF-8
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- Content-Language:
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- - en-US
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- Content-Length:
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- - '56'
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- Date:
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- - Thu, 16 Feb 2017 22:30:15 GMT
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- Connection:
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- - close
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- body:
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- encoding: UTF-8
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- string: |-
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- [
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- {
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