bolognese 0.2.2 → 2.7.0

data/spec/crossref_spec.rb

@@ -1,113 +0,0 @@
-require 'spec_helper'
-
-describe Bolognese::Crossref, vcr: true do
-  context "get metadata" do
-    let(:id) { "https://doi.org/10.1371/journal.pone.0000030" }
-
-    subject { Bolognese::Crossref.new(id) }
-
-    it "journal article" do
-      expect(subject.id).to eq(id)
-      expect(subject.type).to eq("ScholarlyArticle")
-      expect(subject.additional_type).to eq("JournalArticle")
-      expect(subject.author).to eq([{"@type"=>"Person", "givenName"=>"Markus", "familyName"=>"Ralser"},
-                                    {"@type"=>"Person", "givenName"=>"Gino", "familyName"=>"Heeren"},
-                                    {"@type"=>"Person", "givenName"=>"Michael", "familyName"=>"Breitenbach"},
-                                    {"@type"=>"Person", "givenName"=>"Hans", "familyName"=>"Lehrach"},
-                                    {"@type"=>"Person", "givenName"=>"Sylvia", "familyName"=>"Krobitsch"}])
-      expect(subject.editor).to eq([{"@type"=>"Person", "givenName"=>"Guilhem", "familyName"=>"Janbon"}])
-      expect(subject.name).to eq("Triose Phosphate Isomerase Deficiency Is Caused by Altered Dimerization–Not Catalytic Inactivity–of the Mutant Enzymes")
-      expect(subject.license).to eq("http://creativecommons.org/licenses/by/4.0/")
-      expect(subject.date_published).to eq("2006-12-20")
-      expect(subject.date_modified).to eq("2016-12-31T21:37:08Z")
-      expect(subject.page_start).to eq("e30")
-      expect(subject.is_part_of).to eq("@type"=>"Periodical", "name"=>"PLoS ONE", "issn"=>"1932-6203")
-      expect(subject.provider).to eq("@type"=>"Organization", "name"=>"Crossref")
-    end
-
-    it "posted_content" do
-      id = "https://doi.org/10.1101/097196"
-      subject = Bolognese::Crossref.new(id)
-      expect(subject.id).to eq(id)
-      expect(subject.type).to eq("CreativeWork")
-      expect(subject.additional_type).to eq("PostedContent")
-      expect(subject.author.count).to eq(10)
-      expect(subject.author.last).to eq("@type"=>"Person", "@id"=>"http://orcid.org/0000-0003-4060-7360", "givenName"=>"Timothy", "familyName"=>"Clark")
-      expect(subject.name).to eq("A Data Citation Roadmap for Scholarly Data Repositories")
-      expect(subject.alternate_name).to eq("biorxiv;097196v1")
-      expect(subject.description).to start_with("This article presents a practical roadmap")
-      expect(subject.date_published).to eq("2016-12-28")
-      expect(subject.date_modified).to eq("2016-12-29T00:10:20Z")
-      expect(subject.is_part_of).to be_nil
-      expect(subject.provider).to eq("@type"=>"Organization", "name"=>"Crossref")
-    end
-
-    it "DOI with data citation" do
-      id = "10.7554/eLife.01567"
-      subject = Bolognese::Crossref.new(id)
-      expect(subject.id).to eq("https://doi.org/10.7554/elife.01567")
-      expect(subject.type).to eq("ScholarlyArticle")
-      expect(subject.additional_type).to eq("JournalArticle")
-      expect(subject.author).to eq([{"@type"=>"Person", "givenName"=>"Martial", "familyName"=>"Sankar"},
-                                    {"@type"=>"Person", "givenName"=>"Kaisa", "familyName"=>"Nieminen"},
-                                    {"@type"=>"Person", "givenName"=>"Laura", "familyName"=>"Ragni"},
-                                    {"@type"=>"Person", "givenName"=>"Ioannis", "familyName"=>"Xenarios"},
-                                    {"@type"=>"Person", "givenName"=>"Christian S", "familyName"=>"Hardtke"}])
-      expect(subject.license).to eq("http://creativecommons.org/licenses/by/3.0/")
-      expect(subject.name).to eq("Automated quantitative histology reveals vascular morphodynamics during Arabidopsis hypocotyl secondary growth")
-      expect(subject.date_published).to eq("2014-02-11")
-      expect(subject.date_modified).to eq("2015-08-11T05:35:02Z")
-      expect(subject.is_part_of).to eq("@type"=>"Periodical", "name"=>"eLife", "issn"=>"2050-084X")
-      expect(subject.citation.count).to eq(27)
-      expect(subject.citation[21]).to eq("@type"=>"CreativeWork", "@id"=>"https://doi.org/10.5061/dryad.b835k", "position"=>"22", "datePublished"=>"2014")
-      expect(subject.provider).to eq("@type"=>"Organization", "name"=>"Crossref")
-    end
-
-    it "DOI with SICI DOI" do
-      id = "https://doi.org/10.1890/0012-9658(2006)87[2832:tiopma]2.0.co;2"
-      subject = Bolognese::Crossref.new(id)
-      expect(subject.id).to eq("https://doi.org/10.1890/0012-9658(2006)87%5B2832:tiopma%5D2.0.co;2")
-      expect(subject.type).to eq("ScholarlyArticle")
-      expect(subject.additional_type).to eq("JournalArticle")
-      expect(subject.author).to eq([{"@type"=>"Person", "givenName"=>"A.", "familyName"=>"Fenton"}, {"@type"=>"Person", "givenName"=>"S. A.", "familyName"=>"Rands"}])
-      expect(subject.license).to eq("http://doi.wiley.com/10.1002/tdm_license_1")
-      expect(subject.name).to eq("THE IMPACT OF PARASITE MANIPULATION AND PREDATOR FORAGING BEHAVIOR ON PREDATOR–PREY COMMUNITIES")
-      expect(subject.date_published).to eq("2006-11")
-      expect(subject.date_modified).to eq("2016-10-04T17:20:17Z")
-      expect(subject.page_start).to eq("2832")
-      expect(subject.page_end).to eq("2841")
-      expect(subject.is_part_of).to eq("@type"=>"Periodical", "name"=>"Ecology", "issn"=>"0012-9658")
-      expect(subject.provider).to eq("@type"=>"Organization", "name"=>"Crossref")
-    end
-
-    it "date in future" do
-      id = "https://doi.org/10.1016/j.ejphar.2015.03.018"
-      subject = Bolognese::Crossref.new(id)
-      expect(subject.id).to eq(id)
-      expect(subject.type).to eq("ScholarlyArticle")
-      expect(subject.additional_type).to eq("JournalArticle")
-      expect(subject.author).to eq([{"@type"=>"Person", "givenName"=>"Sarah E.", "familyName"=>"Beck"},
-                                    {"@type"=>"Person", "givenName"=>"Suzanne E.", "familyName"=>"Queen"},
-                                    {"@type"=>"Person", "givenName"=>"Kenneth W.", "familyName"=>"Witwer"},
-                                    {"@type"=>"Person", "givenName"=>"Kelly A.", "familyName"=>"Metcalf Pate"},
-                                    {"@type"=>"Person", "givenName"=>"Lisa M.", "familyName"=>"Mangus"},
-                                    {"@type"=>"Person", "givenName"=>"Lucio", "familyName"=>"Gama"},
-                                    {"@type"=>"Person", "givenName"=>"Robert J.", "familyName"=>"Adams"},
-                                    {"@type"=>"Person", "givenName"=>"Janice E.", "familyName"=>"Clements"},
-                                    {"@type"=>"Person", "givenName"=>"M.", "familyName"=>"Christine Zink"},
-                                    {"@type"=>"Person", "givenName"=>"Joseph L.", "familyName"=>"Mankowski"}])
-      expect(subject.name).to eq("Paving the path to HIV neurotherapy: Predicting SIV CNS disease")
-      expect(subject.date_published).to eq("2015-07")
-      expect(subject.date_modified).to eq("2016-08-20T02:19:38Z")
-      expect(subject.is_part_of).to eq("@type"=>"Periodical", "name"=>"European Journal of Pharmacology", "issn"=>"00142999")
-      expect(subject.provider).to eq("@type"=>"Organization", "name"=>"Crossref")
-    end
-
-    it "not found error" do
-      id = "https://doi.org/10.1371/journal.pone.0000030x"
-      subject = Bolognese::Crossref.new(id)
-      expect(subject.id).to eq(id)
-      expect(subject.exists?).to be false
-    end
-  end
-end

data/spec/datacite_spec.rb

@@ -1,49 +0,0 @@
-require 'spec_helper'
-
-describe Bolognese::Datacite, vcr: true do
-  context "get metadata" do
-    let(:id) { "https://doi.org/10.5061/DRYAD.8515" }
-
-    subject { Bolognese::Datacite.new(id) }
-
-    it "Dataset" do
-      expect(subject.id).to eq("https://doi.org/10.5061/dryad.8515")
-      expect(subject.type).to eq("Dataset")
-      expect(subject.additional_type).to eq("DataPackage")
-      expect(subject.author).to eq([{"@type"=>"Person", "givenName"=>"Benjamin", "familyName"=>"Ollomo"},
-                                    {"@type"=>"Person", "givenName"=>"Patrick", "familyName"=>"Durand"},
-                                    {"@type"=>"Person", "givenName"=>"Franck", "familyName"=>"Prugnolle"},
-                                    {"@type"=>"Person", "givenName"=>"Emmanuel J. P.", "familyName"=>"Douzery"},
-                                    {"@type"=>"Person", "givenName"=>"Céline", "familyName"=>"Arnathau"},
-                                    {"@type"=>"Person", "givenName"=>"Dieudonné", "familyName"=>"Nkoghe"},
-                                    {"@type"=>"Person", "givenName"=>"Eric", "familyName"=>"Leroy"},
-                                    {"@type"=>"Person", "givenName"=>"François", "familyName"=>"Renaud"}])
-      expect(subject.name).to eq("Data from: A new malaria agent in African hominids.")
-      expect(subject.alternate_name).to eq("Ollomo B, Durand P, Prugnolle F, Douzery EJP, Arnathau C, Nkoghe D, Leroy E, Renaud F (2009) A new malaria agent in African hominids. PLoS Pathogens 5(5): e1000446.")
-      expect(subject.license).to eq("http://creativecommons.org/publicdomain/zero/1.0/")
-      expect(subject.date_published).to eq("2011")
-      expect(subject.has_part).to eq([{"@type"=>"CreativeWork", "@id"=>"https://doi.org/10.5061/dryad.8515/1"},
-                                      {"@type"=>"CreativeWork", "@id"=>"https://doi.org/10.5061/dryad.8515/2"}])
-      expect(subject.citation).to eq([{"@type"=>"CreativeWork", "@id"=>"https://doi.org/10.1371/journal.ppat.1000446"}])
-      expect(subject.provider).to eq("@type"=>"Organization", "name"=>"DataCite")
-    end
-
-    it "BlogPosting" do
-      id = "https://doi.org/10.5438/4K3M-NYVG"
-      subject = Bolognese::Datacite.new(id)
-      expect(subject.id).to eq("https://doi.org/10.5438/4k3m-nyvg")
-      expect(subject.type).to eq("ScholarlyArticle")
-      expect(subject.additional_type).to eq("BlogPosting")
-      expect(subject.author).to eq([{"@type"=>"Person", "@id"=>"http://orcid.org/0000-0003-1419-2405", "givenName"=>"Martin", "familyName"=>"Fenner"}])
-      expect(subject.name).to eq("Eating your own Dog Food")
-      expect(subject.alternate_name).to eq("MS-49-3632-5083")
-      expect(subject.description).to start_with("Eating your own dog food")
-      expect(subject.date_published).to eq("2016-12-20")
-      expect(subject.date_modified).to eq("2016-12-20")
-      expect(subject.is_part_of).to eq("@type"=>"CreativeWork", "@id"=>"https://doi.org/10.5438/0000-00ss")
-      expect(subject.citation).to eq([{"@type"=>"CreativeWork", "@id"=>"https://doi.org/10.5438/0012"},
-                                      {"@type"=>"CreativeWork", "@id"=>"https://doi.org/10.5438/55e5-t5c0"}])
-      expect(subject.provider).to eq("@type"=>"Organization", "name"=>"DataCite")
-    end
-  end
-end

data/spec/doi_spec.rb

@@ -1,89 +0,0 @@
-require 'spec_helper'
-
-describe Bolognese::Crossref, vcr: true do
-  let(:id) { "https://doi.org/10.1371/journal.pone.0000030" }
-
-  subject { Bolognese::Crossref.new(id) }
-
-  context "normalize doi" do
-    it "doi" do
-      doi = "10.5061/DRYAD.8515"
-      response = subject.normalize_doi(doi)
-      expect(response).to eq("https://doi.org/10.5061/dryad.8515")
-    end
-
-    it "doi with protocol" do
-      doi = "doi:10.5061/DRYAD.8515"
-      response = subject.normalize_doi(doi)
-      expect(response).to eq("https://doi.org/10.5061/dryad.8515")
-    end
-
-    it "SICI doi" do
-      doi = "10.1890/0012-9658(2006)87[2832:tiopma]2.0.co;2"
-      response = subject.normalize_doi(doi)
-      expect(response).to eq("https://doi.org/10.1890/0012-9658(2006)87%5B2832:tiopma%5D2.0.co;2")
-    end
-
-    it "https url" do
-      doi = "https://doi.org/10.5061/dryad.8515"
-      response = subject.normalize_doi(doi)
-      expect(response).to eq("https://doi.org/10.5061/dryad.8515")
-    end
-
-    it "dx.doi.org url" do
-      doi = "http://dx.doi.org/10.5061/dryad.8515"
-      response = subject.normalize_doi(doi)
-      expect(response).to eq("https://doi.org/10.5061/dryad.8515")
-    end
-
-    it "not valid doi prefix" do
-      doi = "https://doi.org/20.5061/dryad.8515"
-      response = subject.normalize_doi(doi)
-      expect(response).to be_nil
-    end
-
-    it "doi prefix with string" do
-      doi = "https://doi.org/10.506X/dryad.8515"
-      response = subject.normalize_doi(doi)
-      expect(response).to be_nil
-    end
-
-    it "doi prefix too long" do
-      doi = "https://doi.org/10.506123/dryad.8515"
-      response = subject.normalize_doi(doi)
-      expect(response).to be_nil
-    end
-
-    it "doi from url without doi proxy" do
-      doi = "https://handle.net/10.5061/dryad.8515"
-      response = subject.normalize_doi(doi)
-      expect(response).to be_nil
-    end
-  end
-
-  context "doi registration agency" do
-    it "datacite" do
-      doi = "https://doi.org/10.5061/dryad.8515"
-      response = subject.get_doi_ra(doi)
-      expect(response["name"]).to eq("DataCite")
-    end
-
-    it "crossref" do
-      doi = "https://doi.org/10.1371/journal.pone.0000030"
-      response = subject.get_doi_ra(doi)
-      expect(response["name"]).to eq("Crossref")
-    end
-
-    it "medra" do
-      doi = "https://doi.org/10.1392/roma081203"
-      response = subject.get_doi_ra(doi)
-      expect(response["name"]).to eq("mEDRA")
-    end
-
-    it "not found" do
-      doi = "https://doi.org/10.5061/dryad.8515x"
-      response = subject.get_doi_ra(doi)
-      expect(response["errors"]).to eq([{"DOI"=>"10.5061/DRYAD.8515X", "status"=>"Invalid DOI"}])
-    end
-  end
-end