biointerchange 0.1.3 → 0.2.0
Sign up to get free protection for your applications and to get access to all the features.
- data/README.md +17 -0
- data/VERSION +1 -1
- data/generators/GOxrefify.rb +41 -0
- data/generators/rdfxml.rb +6 -4
- data/lib/biointerchange/core.rb +94 -20
- data/lib/biointerchange/genomics/gff3_feature_set.rb +11 -3
- data/lib/biointerchange/genomics/gff3_pragmas.rb +3 -3
- data/lib/biointerchange/genomics/gff3_rdf_ntriples.rb +217 -12
- data/lib/biointerchange/genomics/gff3_reader.rb +78 -20
- data/lib/biointerchange/genomics/gvf_reader.rb +9 -3
- data/lib/biointerchange/gff3o.rb +69 -55
- data/lib/biointerchange/goxref.rb +867 -0
- data/lib/biointerchange/gvf1o.rb +546 -82
- data/lib/biointerchange/textmining/text_mining_reader.rb +9 -0
- data/spec/gff3_rdfwriter_spec.rb +1 -1
- data/spec/gvf_rdfwriter_spec.rb +1 -1
- data/spec/text_mining_pdfx_xml_reader_spec.rb +3 -0
- data/spec/text_mining_pubannos_json_reader_spec.rb +4 -1
- data/supplemental/java/biointerchange/pom.xml +1 -1
- data/supplemental/java/biointerchange/src/main/java/org/biointerchange/vocabulary/GFF3O.java +93 -125
- data/supplemental/java/biointerchange/src/main/java/org/biointerchange/vocabulary/GVF1O.java +304 -205
- data/supplemental/java/biointerchange/src/main/java/org/biointerchange/vocabulary/SIO.java +4044 -4290
- data/supplemental/java/biointerchange/src/main/java/org/biointerchange/vocabulary/SOFA.java +3 -3
- data/supplemental/python/biointerchange/gff3o.py +1 -89
- data/supplemental/python/biointerchange/gvf1o.py +129 -147
- data/supplemental/python/biointerchange/sio.py +817 -46
- data/supplemental/python/biointerchange/sofa.py +543 -543
- data/supplemental/python/setup.py +1 -1
- data/web/ontologies.html +1 -3
- metadata +7 -2
@@ -2,1829 +2,1829 @@ import rdflib
|
|
2
2
|
|
3
3
|
from rdflib import Namespace
|
4
4
|
|
5
|
-
|
5
|
+
__namespace_SOFA = Namespace('http://purl.obolibrary.org/obo/http_//purl.org/obo/owl:adjacent_to')
|
6
6
|
|
7
|
-
def
|
8
|
-
return
|
7
|
+
def _namespace_SOFA(accession):
|
8
|
+
return __namespace_SOFA[accession]
|
9
9
|
|
10
|
-
class
|
10
|
+
class SOFA:
|
11
11
|
|
12
12
|
@classmethod
|
13
13
|
def adjacent_to(cls):
|
14
|
-
return
|
14
|
+
return _namespace_SOFA('')
|
15
15
|
|
16
16
|
@classmethod
|
17
17
|
def complete_evidence_for_feature(cls):
|
18
|
-
return
|
18
|
+
return _namespace_SOFA('http://purl.obolibrary.org/obo/http_//purl.org/obo/owl:complete_evidence_for_feature')
|
19
19
|
|
20
20
|
@classmethod
|
21
21
|
def contained_by(cls):
|
22
|
-
return
|
22
|
+
return _namespace_SOFA('http://purl.obolibrary.org/obo/http_//purl.org/obo/owl:contained_by')
|
23
23
|
|
24
24
|
@classmethod
|
25
25
|
def contains(cls):
|
26
|
-
return
|
26
|
+
return _namespace_SOFA('http://purl.obolibrary.org/obo/http_//purl.org/obo/owl:contains')
|
27
27
|
|
28
28
|
@classmethod
|
29
29
|
def derives_from(cls):
|
30
|
-
return
|
30
|
+
return _namespace_SOFA('http://purl.obolibrary.org/obo/http_//purl.org/obo/owl:derives_from')
|
31
31
|
|
32
32
|
@classmethod
|
33
33
|
def evidence_for_feature(cls):
|
34
|
-
return
|
34
|
+
return _namespace_SOFA('http://purl.obolibrary.org/obo/http_//purl.org/obo/owl:evidence_for_feature')
|
35
35
|
|
36
36
|
@classmethod
|
37
37
|
def has_integral_part(cls):
|
38
|
-
return
|
38
|
+
return _namespace_SOFA('http://purl.obolibrary.org/obo/http_//purl.org/obo/owl:has_integral_part')
|
39
39
|
|
40
40
|
@classmethod
|
41
41
|
def has_part(cls):
|
42
|
-
return
|
42
|
+
return _namespace_SOFA('http://purl.obolibrary.org/obo/http_//purl.org/obo/owl:has_part')
|
43
43
|
|
44
44
|
@classmethod
|
45
45
|
def homologous_to(cls):
|
46
|
-
return
|
46
|
+
return _namespace_SOFA('http://purl.obolibrary.org/obo/http_//purl.org/obo/owl:homologous_to')
|
47
47
|
|
48
48
|
@classmethod
|
49
49
|
def integral_part_of(cls):
|
50
|
-
return
|
50
|
+
return _namespace_SOFA('http://purl.obolibrary.org/obo/http_//purl.org/obo/owl:integral_part_of')
|
51
51
|
|
52
52
|
@classmethod
|
53
53
|
def member_of(cls):
|
54
|
-
return
|
54
|
+
return _namespace_SOFA('http://purl.obolibrary.org/obo/http_//purl.org/obo/owl:member_of')
|
55
55
|
|
56
56
|
@classmethod
|
57
57
|
def non_functional_homolog_of(cls):
|
58
|
-
return
|
58
|
+
return _namespace_SOFA('http://purl.obolibrary.org/obo/http_//purl.org/obo/owl:non_functional_homolog_of')
|
59
59
|
|
60
60
|
@classmethod
|
61
61
|
def orthologous_to(cls):
|
62
|
-
return
|
62
|
+
return _namespace_SOFA('http://purl.obolibrary.org/obo/http_//purl.org/obo/owl:orthologous_to')
|
63
63
|
|
64
64
|
@classmethod
|
65
65
|
def paralogous_to(cls):
|
66
|
-
return
|
66
|
+
return _namespace_SOFA('http://purl.obolibrary.org/obo/http_//purl.org/obo/owl:paralogous_to')
|
67
67
|
|
68
68
|
@classmethod
|
69
69
|
def part_of(cls):
|
70
|
-
return
|
70
|
+
return _namespace_SOFA('http://purl.obolibrary.org/obo/http_//purl.org/obo/owl:part_of')
|
71
71
|
|
72
72
|
@classmethod
|
73
73
|
def partial_evidence_for_feature(cls):
|
74
|
-
return
|
74
|
+
return _namespace_SOFA('http://purl.obolibrary.org/obo/http_//purl.org/obo/owl:partial_evidence_for_feature')
|
75
75
|
|
76
76
|
@classmethod
|
77
77
|
def similar_to(cls):
|
78
|
-
return
|
78
|
+
return _namespace_SOFA('http://purl.obolibrary.org/obo/http_//purl.org/obo/owl:similar_to')
|
79
79
|
|
80
80
|
@classmethod
|
81
81
|
def Sequence_Ontology(cls):
|
82
|
-
return
|
82
|
+
return _namespace_SOFA('http://purl.obolibrary.org/obo/SO_0000000')
|
83
83
|
|
84
84
|
@classmethod
|
85
85
|
def region(cls):
|
86
86
|
"""A sequence_feature with an extent greater than zero. A nucleotide region is composed of bases and a polypeptide region is composed of amino acids. (cls, SO:ke)
|
87
87
|
(http://purl.obolibrary.org/obo/SO_0000001)
|
88
88
|
"""
|
89
|
-
return
|
89
|
+
return _namespace_SOFA('http://purl.obolibrary.org/obo/SO_0000001')
|
90
90
|
|
91
91
|
@classmethod
|
92
92
|
def interior_coding_exon(cls):
|
93
|
-
return
|
93
|
+
return _namespace_SOFA('http://purl.obolibrary.org/obo/SO_0000004')
|
94
94
|
|
95
95
|
@classmethod
|
96
96
|
def satellite_DNA(cls):
|
97
97
|
"""The many tandem repeats (cls, identical or related) of a short basic repeating unit; many have a base composition or other property different from the genome average that allows them to be separated from the bulk (main band) genomic DNA. (http://www.ebi.ac.uk/embl/Documentation/FT_definitions/feature_table.html)
|
98
98
|
(http://purl.obolibrary.org/obo/SO_0000005)
|
99
99
|
"""
|
100
|
-
return
|
100
|
+
return _namespace_SOFA('http://purl.obolibrary.org/obo/SO_0000005')
|
101
101
|
|
102
102
|
@classmethod
|
103
103
|
def PCR_product(cls):
|
104
104
|
"""A region amplified by a PCR reaction. (cls, SO:ke)
|
105
105
|
(http://purl.obolibrary.org/obo/SO_0000006)
|
106
106
|
"""
|
107
|
-
return
|
107
|
+
return _namespace_SOFA('http://purl.obolibrary.org/obo/SO_0000006')
|
108
108
|
|
109
109
|
@classmethod
|
110
110
|
def read_pair(cls):
|
111
111
|
"""One of a pair of sequencing reads in which the two members of the pair are related by originating at either end of a clone insert. (cls, SO:ls)
|
112
112
|
(http://purl.obolibrary.org/obo/SO_0000007)
|
113
113
|
"""
|
114
|
-
return
|
114
|
+
return _namespace_SOFA('http://purl.obolibrary.org/obo/SO_0000007')
|
115
115
|
|
116
116
|
@classmethod
|
117
117
|
def scRNA(cls):
|
118
118
|
"""A small non coding RNA sequence, present in the cytoplasm. (cls, SO:ke)
|
119
119
|
(http://purl.obolibrary.org/obo/SO_0000013)
|
120
120
|
"""
|
121
|
-
return
|
121
|
+
return _namespace_SOFA('http://purl.obolibrary.org/obo/SO_0000013')
|
122
122
|
|
123
123
|
@classmethod
|
124
124
|
def match_set(cls):
|
125
125
|
"""A collection of match parts. (cls, SO:ke)
|
126
126
|
(http://purl.obolibrary.org/obo/SO_0000038)
|
127
127
|
"""
|
128
|
-
return
|
128
|
+
return _namespace_SOFA('http://purl.obolibrary.org/obo/SO_0000038')
|
129
129
|
|
130
130
|
@classmethod
|
131
131
|
def match_part(cls):
|
132
132
|
"""A part of a match, for example an hsp from blast is a match_part. (cls, SO:ke)
|
133
133
|
(http://purl.obolibrary.org/obo/SO_0000039)
|
134
134
|
"""
|
135
|
-
return
|
135
|
+
return _namespace_SOFA('http://purl.obolibrary.org/obo/SO_0000039')
|
136
136
|
|
137
137
|
@classmethod
|
138
138
|
def gene_part(cls):
|
139
139
|
"""A part of a gene, that has no other route in the ontology back to region. This concept is necessary for logical inference as these parts must have the properties of region. It also allows us to associate all the parts of genes with a gene. (cls, SO:ke)
|
140
140
|
(http://purl.obolibrary.org/obo/SO_0000050)
|
141
141
|
"""
|
142
|
-
return
|
142
|
+
return _namespace_SOFA('http://purl.obolibrary.org/obo/SO_0000050')
|
143
143
|
|
144
144
|
@classmethod
|
145
145
|
def operator(cls):
|
146
146
|
"""A regulatory element of an operon to which activators or repressors bind thereby effecting translation of genes in that operon. (cls, SO:ma)
|
147
147
|
(http://purl.obolibrary.org/obo/SO_0000057)
|
148
148
|
"""
|
149
|
-
return
|
149
|
+
return _namespace_SOFA('http://purl.obolibrary.org/obo/SO_0000057')
|
150
150
|
|
151
151
|
@classmethod
|
152
152
|
def nuclease_binding_site(cls):
|
153
153
|
"""A binding site that, of a nucleotide molecule, that interacts selectively and non-covalently with polypeptide residues of a nuclease. (cls, SO:cb)
|
154
154
|
(http://purl.obolibrary.org/obo/SO_0000059)
|
155
155
|
"""
|
156
|
-
return
|
156
|
+
return _namespace_SOFA('http://purl.obolibrary.org/obo/SO_0000059')
|
157
157
|
|
158
158
|
@classmethod
|
159
159
|
def transposable_element(cls):
|
160
160
|
"""A transposon or insertion sequence. An element that can insert in a variety of DNA sequences. (cls, http://www.sci.sdsu.edu/~smaloy/Glossary/T.html)
|
161
161
|
(http://purl.obolibrary.org/obo/SO_0000101)
|
162
162
|
"""
|
163
|
-
return
|
163
|
+
return _namespace_SOFA('http://purl.obolibrary.org/obo/SO_0000101')
|
164
164
|
|
165
165
|
@classmethod
|
166
166
|
def expressed_sequence_match(cls):
|
167
167
|
"""A match to an EST or cDNA sequence. (cls, SO:ke)
|
168
168
|
(http://purl.obolibrary.org/obo/SO_0000102)
|
169
169
|
"""
|
170
|
-
return
|
170
|
+
return _namespace_SOFA('http://purl.obolibrary.org/obo/SO_0000102')
|
171
171
|
|
172
172
|
@classmethod
|
173
173
|
def clone_insert_end(cls):
|
174
174
|
"""The end of the clone insert. (cls, SO:ke)
|
175
175
|
(http://purl.obolibrary.org/obo/SO_0000103)
|
176
176
|
"""
|
177
|
-
return
|
177
|
+
return _namespace_SOFA('http://purl.obolibrary.org/obo/SO_0000103')
|
178
178
|
|
179
179
|
@classmethod
|
180
180
|
def polypeptide(cls):
|
181
181
|
"""A sequence of amino acids linked by peptide bonds which may lack appreciable tertiary structure and may not be liable to irreversible denaturation. (cls, SO:ma)
|
182
182
|
(http://purl.obolibrary.org/obo/SO_0000104)
|
183
183
|
"""
|
184
|
-
return
|
184
|
+
return _namespace_SOFA('http://purl.obolibrary.org/obo/SO_0000104')
|
185
185
|
|
186
186
|
@classmethod
|
187
187
|
def sequence_variant_obs(cls):
|
188
188
|
"""A sequence_variant is a non exact copy of a sequence_feature or genome exhibiting one or more sequence_alteration. (cls, SO:ke)
|
189
189
|
(http://purl.obolibrary.org/obo/SO_0000109)
|
190
190
|
"""
|
191
|
-
return
|
191
|
+
return _namespace_SOFA('http://purl.obolibrary.org/obo/SO_0000109')
|
192
192
|
|
193
193
|
@classmethod
|
194
194
|
def sequence_feature(cls):
|
195
195
|
"""An extent of biological sequence. (cls, SO:ke)
|
196
196
|
(http://purl.obolibrary.org/obo/SO_0000110)
|
197
197
|
"""
|
198
|
-
return
|
198
|
+
return _namespace_SOFA('http://purl.obolibrary.org/obo/SO_0000110')
|
199
199
|
|
200
200
|
@classmethod
|
201
201
|
def primer(cls):
|
202
202
|
"""An oligo to which new deoxyribonucleotides can be added by DNA polymerase. (cls, SO:ke)
|
203
203
|
(http://purl.obolibrary.org/obo/SO_0000112)
|
204
204
|
"""
|
205
|
-
return
|
205
|
+
return _namespace_SOFA('http://purl.obolibrary.org/obo/SO_0000112')
|
206
206
|
|
207
207
|
@classmethod
|
208
208
|
def proviral_region(cls):
|
209
209
|
"""A viral sequence which has integrated into a host genome. (cls, SO:ke)
|
210
210
|
(http://purl.obolibrary.org/obo/SO_0000113)
|
211
211
|
"""
|
212
|
-
return
|
212
|
+
return _namespace_SOFA('http://purl.obolibrary.org/obo/SO_0000113')
|
213
213
|
|
214
214
|
@classmethod
|
215
215
|
def methylated_C(cls):
|
216
216
|
"""A methylated deoxy-cytosine. (cls, SO:ke)
|
217
217
|
(http://purl.obolibrary.org/obo/SO_0000114)
|
218
218
|
"""
|
219
|
-
return
|
219
|
+
return _namespace_SOFA('http://purl.obolibrary.org/obo/SO_0000114')
|
220
220
|
|
221
221
|
@classmethod
|
222
222
|
def protein_coding_primary_transcript(cls):
|
223
223
|
"""A primary transcript that, at least in part, encodes one or more proteins. (cls, SO:ke)
|
224
224
|
(http://purl.obolibrary.org/obo/SO_0000120)
|
225
225
|
"""
|
226
|
-
return
|
226
|
+
return _namespace_SOFA('http://purl.obolibrary.org/obo/SO_0000120')
|
227
227
|
|
228
228
|
@classmethod
|
229
229
|
def ribosome_entry_site(cls):
|
230
230
|
"""Region in mRNA where ribosome assembles. (cls, SO:ke)
|
231
231
|
(http://purl.obolibrary.org/obo/SO_0000139)
|
232
232
|
"""
|
233
|
-
return
|
233
|
+
return _namespace_SOFA('http://purl.obolibrary.org/obo/SO_0000139')
|
234
234
|
|
235
235
|
@classmethod
|
236
236
|
def attenuator(cls):
|
237
237
|
"""A sequence segment located within the five prime end of an mRNA that causes premature termination of translation. (cls, SO:as)
|
238
238
|
(http://purl.obolibrary.org/obo/SO_0000140)
|
239
239
|
"""
|
240
|
-
return
|
240
|
+
return _namespace_SOFA('http://purl.obolibrary.org/obo/SO_0000140')
|
241
241
|
|
242
242
|
@classmethod
|
243
243
|
def terminator(cls):
|
244
244
|
"""The sequence of DNA located either at the end of the transcript that causes RNA polymerase to terminate transcription. (cls, http://www.ebi.ac.uk/embl/Documentation/FT_definitions/feature_table.html)
|
245
245
|
(http://purl.obolibrary.org/obo/SO_0000141)
|
246
246
|
"""
|
247
|
-
return
|
247
|
+
return _namespace_SOFA('http://purl.obolibrary.org/obo/SO_0000141')
|
248
248
|
|
249
249
|
@classmethod
|
250
250
|
def assembly_component(cls):
|
251
251
|
"""A region of known length which may be used to manufacture a longer region. (cls, SO:ke)
|
252
252
|
(http://purl.obolibrary.org/obo/SO_0000143)
|
253
253
|
"""
|
254
|
-
return
|
254
|
+
return _namespace_SOFA('http://purl.obolibrary.org/obo/SO_0000143')
|
255
255
|
|
256
256
|
@classmethod
|
257
257
|
def exon(cls):
|
258
258
|
"""A region of the transcript sequence within a gene which is not removed from the primary RNA transcript by RNA splicing. (cls, SO:ke)
|
259
259
|
(http://purl.obolibrary.org/obo/SO_0000147)
|
260
260
|
"""
|
261
|
-
return
|
261
|
+
return _namespace_SOFA('http://purl.obolibrary.org/obo/SO_0000147')
|
262
262
|
|
263
263
|
@classmethod
|
264
264
|
def supercontig(cls):
|
265
265
|
"""One or more contigs that have been ordered and oriented using end-read information. Contains gaps that are filled with N's. (cls, SO:ls)
|
266
266
|
(http://purl.obolibrary.org/obo/SO_0000148)
|
267
267
|
"""
|
268
|
-
return
|
268
|
+
return _namespace_SOFA('http://purl.obolibrary.org/obo/SO_0000148')
|
269
269
|
|
270
270
|
@classmethod
|
271
271
|
def contig(cls):
|
272
272
|
"""A contiguous sequence derived from sequence assembly. Has no gaps, but may contain N's from unavailable bases. (cls, SO:ls)
|
273
273
|
(http://purl.obolibrary.org/obo/SO_0000149)
|
274
274
|
"""
|
275
|
-
return
|
275
|
+
return _namespace_SOFA('http://purl.obolibrary.org/obo/SO_0000149')
|
276
276
|
|
277
277
|
@classmethod
|
278
278
|
def read(cls):
|
279
279
|
"""A sequence obtained from a single sequencing experiment. Typically a read is produced when a base calling program interprets information from a chromatogram trace file produced from a sequencing machine. (cls, SO:rd)
|
280
280
|
(http://purl.obolibrary.org/obo/SO_0000150)
|
281
281
|
"""
|
282
|
-
return
|
282
|
+
return _namespace_SOFA('http://purl.obolibrary.org/obo/SO_0000150')
|
283
283
|
|
284
284
|
@classmethod
|
285
285
|
def clone(cls):
|
286
286
|
"""A piece of DNA that has been inserted in a vector so that it can be propagated in a host bacterium or some other organism. (cls, SO:ke)
|
287
287
|
(http://purl.obolibrary.org/obo/SO_0000151)
|
288
288
|
"""
|
289
|
-
return
|
289
|
+
return _namespace_SOFA('http://purl.obolibrary.org/obo/SO_0000151')
|
290
290
|
|
291
291
|
@classmethod
|
292
292
|
def deletion(cls):
|
293
293
|
"""The point at which one or more contiguous nucleotides were excised. (cls, SO:ke)
|
294
294
|
(http://purl.obolibrary.org/obo/SO_0000159)
|
295
295
|
"""
|
296
|
-
return
|
296
|
+
return _namespace_SOFA('http://purl.obolibrary.org/obo/SO_0000159')
|
297
297
|
|
298
298
|
@classmethod
|
299
299
|
def methylated_A(cls):
|
300
300
|
"""A modified RNA base in which adenine has been methylated. (cls, SO:ke)
|
301
301
|
(http://purl.obolibrary.org/obo/SO_0000161)
|
302
302
|
"""
|
303
|
-
return
|
303
|
+
return _namespace_SOFA('http://purl.obolibrary.org/obo/SO_0000161')
|
304
304
|
|
305
305
|
@classmethod
|
306
306
|
def splice_site(cls):
|
307
307
|
"""Consensus region of primary transcript bordering junction of splicing. A region that overlaps exactly 2 base and adjacent_to splice_junction. (cls, SO:cjm, SO:ke)
|
308
308
|
(http://purl.obolibrary.org/obo/SO_0000162)
|
309
309
|
"""
|
310
|
-
return
|
310
|
+
return _namespace_SOFA('http://purl.obolibrary.org/obo/SO_0000162')
|
311
311
|
|
312
312
|
@classmethod
|
313
313
|
def five_prime_cis_splice_site(cls):
|
314
314
|
"""Intronic 2 bp region bordering the exon, at the 5' edge of the intron. A splice_site that is downstream_adjacent_to exon and starts intron. (cls, http://www.ucl.ac.uk/~ucbhjow/b241/glossary.html, SO:cjm, SO:ke)
|
315
315
|
(http://purl.obolibrary.org/obo/SO_0000163)
|
316
316
|
"""
|
317
|
-
return
|
317
|
+
return _namespace_SOFA('http://purl.obolibrary.org/obo/SO_0000163')
|
318
318
|
|
319
319
|
@classmethod
|
320
320
|
def three_prime_cis_splice_site(cls):
|
321
321
|
"""Intronic 2 bp region bordering the exon, at the 3' edge of the intron. A splice_site that is upstream_adjacent_to exon and finishes intron. (cls, http://www.ucl.ac.uk/~ucbhjow/b241/glossary.html, SO:cjm, SO:ke)
|
322
322
|
(http://purl.obolibrary.org/obo/SO_0000164)
|
323
323
|
"""
|
324
|
-
return
|
324
|
+
return _namespace_SOFA('http://purl.obolibrary.org/obo/SO_0000164')
|
325
325
|
|
326
326
|
@classmethod
|
327
327
|
def enhancer(cls):
|
328
328
|
"""A cis-acting sequence that increases the utilization of (cls, some) eukaryotic promoters, and can function in either orientation and in any location (upstream or downstream) relative to the promoter. (http://www.ebi.ac.uk/embl/Documentation/FT_definitions/feature_table.html)
|
329
329
|
(http://purl.obolibrary.org/obo/SO_0000165)
|
330
330
|
"""
|
331
|
-
return
|
331
|
+
return _namespace_SOFA('http://purl.obolibrary.org/obo/SO_0000165')
|
332
332
|
|
333
333
|
@classmethod
|
334
334
|
def promoter(cls):
|
335
335
|
"""A regulatory_region composed of the TSS(cls, s) and binding sites for TF_complexes of the basal transcription machinery. (SO:regcreative)
|
336
336
|
(http://purl.obolibrary.org/obo/SO_0000167)
|
337
337
|
"""
|
338
|
-
return
|
338
|
+
return _namespace_SOFA('http://purl.obolibrary.org/obo/SO_0000167')
|
339
339
|
|
340
340
|
@classmethod
|
341
341
|
def cross_genome_match(cls):
|
342
342
|
"""A nucleotide match against a sequence from another organism. (cls, SO:ma)
|
343
343
|
(http://purl.obolibrary.org/obo/SO_0000177)
|
344
344
|
"""
|
345
|
-
return
|
345
|
+
return _namespace_SOFA('http://purl.obolibrary.org/obo/SO_0000177')
|
346
346
|
|
347
347
|
@classmethod
|
348
348
|
def operon(cls):
|
349
349
|
"""A group of contiguous genes transcribed as a single (cls, polycistronic) mRNA from a single regulatory region. (SO:ma)
|
350
350
|
(http://purl.obolibrary.org/obo/SO_0000178)
|
351
351
|
"""
|
352
|
-
return
|
352
|
+
return _namespace_SOFA('http://purl.obolibrary.org/obo/SO_0000178')
|
353
353
|
|
354
354
|
@classmethod
|
355
355
|
def clone_insert_start(cls):
|
356
356
|
"""The start of the clone insert. (cls, SO:ke)
|
357
357
|
(http://purl.obolibrary.org/obo/SO_0000179)
|
358
358
|
"""
|
359
|
-
return
|
359
|
+
return _namespace_SOFA('http://purl.obolibrary.org/obo/SO_0000179')
|
360
360
|
|
361
361
|
@classmethod
|
362
362
|
def translated_nucleotide_match(cls):
|
363
363
|
"""A match against a translated sequence. (cls, SO:ke)
|
364
364
|
(http://purl.obolibrary.org/obo/SO_0000181)
|
365
365
|
"""
|
366
|
-
return
|
366
|
+
return _namespace_SOFA('http://purl.obolibrary.org/obo/SO_0000181')
|
367
367
|
|
368
368
|
@classmethod
|
369
369
|
def non_transcribed_region(cls):
|
370
370
|
"""A region of the gene which is not transcribed. (cls, SO:ke)
|
371
371
|
(http://purl.obolibrary.org/obo/SO_0000183)
|
372
372
|
"""
|
373
|
-
return
|
373
|
+
return _namespace_SOFA('http://purl.obolibrary.org/obo/SO_0000183')
|
374
374
|
|
375
375
|
@classmethod
|
376
376
|
def primary_transcript(cls):
|
377
377
|
"""A transcript that in its initial state requires modification to be functional. (cls, SO:ma)
|
378
378
|
(http://purl.obolibrary.org/obo/SO_0000185)
|
379
379
|
"""
|
380
|
-
return
|
380
|
+
return _namespace_SOFA('http://purl.obolibrary.org/obo/SO_0000185')
|
381
381
|
|
382
382
|
@classmethod
|
383
383
|
def repeat_family(cls):
|
384
384
|
"""A group of characterized repeat sequences. (cls, SO:ke)
|
385
385
|
(http://purl.obolibrary.org/obo/SO_0000187)
|
386
386
|
"""
|
387
|
-
return
|
387
|
+
return _namespace_SOFA('http://purl.obolibrary.org/obo/SO_0000187')
|
388
388
|
|
389
389
|
@classmethod
|
390
390
|
def intron(cls):
|
391
391
|
"""A region of a primary transcript that is transcribed, but removed from within the transcript by splicing together the sequences (cls, exons) on either side of it. (http://www.ebi.ac.uk/embl/Documentation/FT_definitions/feature_table.html)
|
392
392
|
(http://purl.obolibrary.org/obo/SO_0000188)
|
393
393
|
"""
|
394
|
-
return
|
394
|
+
return _namespace_SOFA('http://purl.obolibrary.org/obo/SO_0000188')
|
395
395
|
|
396
396
|
@classmethod
|
397
397
|
def RFLP_fragment(cls):
|
398
398
|
"""A DNA fragment used as a reagent to detect the polymorphic genomic loci by hybridizing against the genomic DNA digested with a given restriction enzyme. (cls, GOC:pj)
|
399
399
|
(http://purl.obolibrary.org/obo/SO_0000193)
|
400
400
|
"""
|
401
|
-
return
|
401
|
+
return _namespace_SOFA('http://purl.obolibrary.org/obo/SO_0000193')
|
402
402
|
|
403
403
|
@classmethod
|
404
404
|
def coding_exon(cls):
|
405
405
|
"""An exon whereby at least one base is part of a codon (cls, here, 'codon' is inclusive of the stop_codon). (SO:ke)
|
406
406
|
(http://purl.obolibrary.org/obo/SO_0000195)
|
407
407
|
"""
|
408
|
-
return
|
408
|
+
return _namespace_SOFA('http://purl.obolibrary.org/obo/SO_0000195')
|
409
409
|
|
410
410
|
@classmethod
|
411
411
|
def five_prime_coding_exon_coding_region(cls):
|
412
412
|
"""The sequence of the five_prime_coding_exon that codes for protein. (cls, SO:cjm)
|
413
413
|
(http://purl.obolibrary.org/obo/SO_0000196)
|
414
414
|
"""
|
415
|
-
return
|
415
|
+
return _namespace_SOFA('http://purl.obolibrary.org/obo/SO_0000196')
|
416
416
|
|
417
417
|
@classmethod
|
418
418
|
def three_prime_coding_exon_coding_region(cls):
|
419
419
|
"""The sequence of the three_prime_coding_exon that codes for protein. (cls, SO:cjm)
|
420
420
|
(http://purl.obolibrary.org/obo/SO_0000197)
|
421
421
|
"""
|
422
|
-
return
|
422
|
+
return _namespace_SOFA('http://purl.obolibrary.org/obo/SO_0000197')
|
423
423
|
|
424
424
|
@classmethod
|
425
425
|
def noncoding_exon(cls):
|
426
426
|
"""An exon that does not contain any codons. (cls, SO:ke)
|
427
427
|
(http://purl.obolibrary.org/obo/SO_0000198)
|
428
428
|
"""
|
429
|
-
return
|
429
|
+
return _namespace_SOFA('http://purl.obolibrary.org/obo/SO_0000198')
|
430
430
|
|
431
431
|
@classmethod
|
432
432
|
def five_prime_coding_exon(cls):
|
433
433
|
"""The 5' most coding exon. (cls, SO:ke)
|
434
434
|
(http://purl.obolibrary.org/obo/SO_0000200)
|
435
435
|
"""
|
436
|
-
return
|
436
|
+
return _namespace_SOFA('http://purl.obolibrary.org/obo/SO_0000200')
|
437
437
|
|
438
438
|
@classmethod
|
439
439
|
def UTR(cls):
|
440
440
|
"""Messenger RNA sequences that are untranslated and lie five prime or three prime to sequences which are translated. (cls, SO:ke)
|
441
441
|
(http://purl.obolibrary.org/obo/SO_0000203)
|
442
442
|
"""
|
443
|
-
return
|
443
|
+
return _namespace_SOFA('http://purl.obolibrary.org/obo/SO_0000203')
|
444
444
|
|
445
445
|
@classmethod
|
446
446
|
def five_prime_UTR(cls):
|
447
447
|
"""A region at the 5' end of a mature transcript (cls, preceding the initiation codon) that is not translated into a protein. (http://www.ebi.ac.uk/embl/Documentation/FT_definitions/feature_table.html)
|
448
448
|
(http://purl.obolibrary.org/obo/SO_0000204)
|
449
449
|
"""
|
450
|
-
return
|
450
|
+
return _namespace_SOFA('http://purl.obolibrary.org/obo/SO_0000204')
|
451
451
|
|
452
452
|
@classmethod
|
453
453
|
def three_prime_UTR(cls):
|
454
454
|
"""A region at the 3' end of a mature transcript (cls, following the stop codon) that is not translated into a protein. (http://www.ebi.ac.uk/embl/Documentation/FT_definitions/feature_table.html)
|
455
455
|
(http://purl.obolibrary.org/obo/SO_0000205)
|
456
456
|
"""
|
457
|
-
return
|
457
|
+
return _namespace_SOFA('http://purl.obolibrary.org/obo/SO_0000205')
|
458
458
|
|
459
459
|
@classmethod
|
460
460
|
def rRNA_primary_transcript(cls):
|
461
461
|
"""A primary transcript encoding a ribosomal RNA. (cls, SO:ke)
|
462
462
|
(http://purl.obolibrary.org/obo/SO_0000209)
|
463
463
|
"""
|
464
|
-
return
|
464
|
+
return _namespace_SOFA('http://purl.obolibrary.org/obo/SO_0000209')
|
465
465
|
|
466
466
|
@classmethod
|
467
467
|
def mature_transcript(cls):
|
468
468
|
"""A transcript which has undergone the necessary modifications, if any, for its function. In eukaryotes this includes, for example, processing of introns, cleavage, base modification, and modifications to the 5' and/or the 3' ends, other than addition of bases. In bacteria functional mRNAs are usually not modified. (cls, SO:ke)
|
469
469
|
(http://purl.obolibrary.org/obo/SO_0000233)
|
470
470
|
"""
|
471
|
-
return
|
471
|
+
return _namespace_SOFA('http://purl.obolibrary.org/obo/SO_0000233')
|
472
472
|
|
473
473
|
@classmethod
|
474
474
|
def mRNA(cls):
|
475
475
|
"""Messenger RNA is the intermediate molecule between DNA and protein. It includes UTR and coding sequences. It does not contain introns. (cls, SO:ma)
|
476
476
|
(http://purl.obolibrary.org/obo/SO_0000234)
|
477
477
|
"""
|
478
|
-
return
|
478
|
+
return _namespace_SOFA('http://purl.obolibrary.org/obo/SO_0000234')
|
479
479
|
|
480
480
|
@classmethod
|
481
481
|
def TF_binding_site(cls):
|
482
482
|
"""A region of a nucleotide molecule that binds a Transcription Factor or Transcription Factor complex [GO:0005667]. (cls, SO:ke)
|
483
483
|
(http://purl.obolibrary.org/obo/SO_0000235)
|
484
484
|
"""
|
485
|
-
return
|
485
|
+
return _namespace_SOFA('http://purl.obolibrary.org/obo/SO_0000235')
|
486
486
|
|
487
487
|
@classmethod
|
488
488
|
def ORF(cls):
|
489
489
|
"""The in-frame interval between the stop codons of a reading frame which when read as sequential triplets, has the potential of encoding a sequential string of amino acids. TER(cls, NNN)nTER. (SGD:rb, SO:ma)
|
490
490
|
(http://purl.obolibrary.org/obo/SO_0000236)
|
491
491
|
"""
|
492
|
-
return
|
492
|
+
return _namespace_SOFA('http://purl.obolibrary.org/obo/SO_0000236')
|
493
493
|
|
494
494
|
@classmethod
|
495
495
|
def flanking_region(cls):
|
496
496
|
"""The sequences extending on either side of a specific region. (cls, SO:ke)
|
497
497
|
(http://purl.obolibrary.org/obo/SO_0000239)
|
498
498
|
"""
|
499
|
-
return
|
499
|
+
return _namespace_SOFA('http://purl.obolibrary.org/obo/SO_0000239')
|
500
500
|
|
501
501
|
@classmethod
|
502
502
|
def rRNA(cls):
|
503
503
|
"""RNA that comprises part of a ribosome, and that can provide both structural scaffolding and catalytic activity. (cls, http://www.ebi.ac.uk/embl/Documentation/FT_definitions/feature_table.html, ISBN:0198506732)
|
504
504
|
(http://purl.obolibrary.org/obo/SO_0000252)
|
505
505
|
"""
|
506
|
-
return
|
506
|
+
return _namespace_SOFA('http://purl.obolibrary.org/obo/SO_0000252')
|
507
507
|
|
508
508
|
@classmethod
|
509
509
|
def tRNA(cls):
|
510
510
|
"""Transfer RNA (cls, tRNA) molecules are approximately 80 nucleotides in length. Their secondary structure includes four short double-helical elements and three loops (D, anti-codon, and T loops). Further hydrogen bonds mediate the characteristic L-shaped molecular structure. Transfer RNAs have two regions of fundamental functional importance: the anti-codon, which is responsible for specific mRNA codon recognition, and the 3' end, to which the tRNA's corresponding amino acid is attached (by aminoacyl-tRNA synthetases). Transfer RNAs cope with the degeneracy of the genetic code in two manners: having more than one tRNA (with a specific anti-codon) for a particular amino acid; and 'wobble' base-pairing, i.e. permitting non-standard base-pairing at the 3rd anti-codon position. (http://www.sanger.ac.uk/cgi-bin/Rfam/getacc?RF00005, ISBN:0198506732)
|
511
511
|
(http://purl.obolibrary.org/obo/SO_0000253)
|
512
512
|
"""
|
513
|
-
return
|
513
|
+
return _namespace_SOFA('http://purl.obolibrary.org/obo/SO_0000253')
|
514
514
|
|
515
515
|
@classmethod
|
516
516
|
def snRNA(cls):
|
517
517
|
"""A small nuclear RNA molecule involved in pre-mRNA splicing and processing. (cls, http://www.ebi.ac.uk/embl/Documentation/FT_definitions/feature_table.html, PMID:11733745, WB:ems)
|
518
518
|
(http://purl.obolibrary.org/obo/SO_0000274)
|
519
519
|
"""
|
520
|
-
return
|
520
|
+
return _namespace_SOFA('http://purl.obolibrary.org/obo/SO_0000274')
|
521
521
|
|
522
522
|
@classmethod
|
523
523
|
def snoRNA(cls):
|
524
524
|
"""A snoRNA (cls, small nucleolar RNA) is any one of a class of small RNAs that are associated with the eukaryotic nucleus as components of small nucleolar ribonucleoproteins. They participate in the processing or modifications of many RNAs, mostly ribosomal RNAs (rRNAs) though snoRNAs are also known to target other classes of RNA, including spliceosomal RNAs, tRNAs, and mRNAs via a stretch of sequence that is complementary to a sequence in the targeted RNA. (GOC:kgc)
|
525
525
|
(http://purl.obolibrary.org/obo/SO_0000275)
|
526
526
|
"""
|
527
|
-
return
|
527
|
+
return _namespace_SOFA('http://purl.obolibrary.org/obo/SO_0000275')
|
528
528
|
|
529
529
|
@classmethod
|
530
530
|
def miRNA(cls):
|
531
531
|
"""Small, ~22-nt, RNA molecule that is the endogenous transcript of a miRNA gene. Micro RNAs are produced from precursor molecules (cls, SO:0000647) that can form local hairpin structures, which ordinarily are processed (via the Dicer pathway) such that a single miRNA molecule accumulates from one arm of a hairpin precursor molecule. Micro RNAs may trigger the cleavage of their target molecules or act as translational repressors. (PMID:12592000)
|
532
532
|
(http://purl.obolibrary.org/obo/SO_0000276)
|
533
533
|
"""
|
534
|
-
return
|
534
|
+
return _namespace_SOFA('http://purl.obolibrary.org/obo/SO_0000276')
|
535
535
|
|
536
536
|
@classmethod
|
537
537
|
def microsatellite(cls):
|
538
538
|
"""A repeat_region containing repeat_units (cls, 2 to 4 bp) that is repeated multiple times in tandem. (http://www.informatics.jax.org/silver/glossary.shtml)
|
539
539
|
(http://purl.obolibrary.org/obo/SO_0000289)
|
540
540
|
"""
|
541
|
-
return
|
541
|
+
return _namespace_SOFA('http://purl.obolibrary.org/obo/SO_0000289')
|
542
542
|
|
543
543
|
@classmethod
|
544
544
|
def inverted_repeat(cls):
|
545
545
|
"""The sequence is complementarily repeated on the opposite strand. It is a palindrome, and it may, or may not be hyphenated. Examples: GCTGATCAGC, or GCTGA-----TCAGC. (cls, SO:ke)
|
546
546
|
(http://purl.obolibrary.org/obo/SO_0000294)
|
547
547
|
"""
|
548
|
-
return
|
548
|
+
return _namespace_SOFA('http://purl.obolibrary.org/obo/SO_0000294')
|
549
549
|
|
550
550
|
@classmethod
|
551
551
|
def origin_of_replication(cls):
|
552
552
|
"""The origin of replication; starting site for duplication of a nucleic acid molecule to give two identical copies. (cls, http://www.ebi.ac.uk/embl/Documentation/FT_definitions/feature_table.html)
|
553
553
|
(http://purl.obolibrary.org/obo/SO_0000296)
|
554
554
|
"""
|
555
|
-
return
|
555
|
+
return _namespace_SOFA('http://purl.obolibrary.org/obo/SO_0000296')
|
556
556
|
|
557
557
|
@classmethod
|
558
558
|
def clip(cls):
|
559
559
|
"""Part of the primary transcript that is clipped off during processing. (cls, SO:ke)
|
560
560
|
(http://purl.obolibrary.org/obo/SO_0000303)
|
561
561
|
"""
|
562
|
-
return
|
562
|
+
return _namespace_SOFA('http://purl.obolibrary.org/obo/SO_0000303')
|
563
563
|
|
564
564
|
@classmethod
|
565
565
|
def modified_base(cls):
|
566
566
|
"""A modified nucleotide, i.e. a nucleotide other than A, T, C. G. (cls, http://www.ebi.ac.uk/embl/Documentation/FT_definitions/feature_table.html)
|
567
567
|
(http://purl.obolibrary.org/obo/SO_0000305)
|
568
568
|
"""
|
569
|
-
return
|
569
|
+
return _namespace_SOFA('http://purl.obolibrary.org/obo/SO_0000305')
|
570
570
|
|
571
571
|
@classmethod
|
572
572
|
def methylated_base_feature(cls):
|
573
573
|
"""A nucleotide modified by methylation. (cls, SO:ke)
|
574
574
|
(http://purl.obolibrary.org/obo/SO_0000306)
|
575
575
|
"""
|
576
|
-
return
|
576
|
+
return _namespace_SOFA('http://purl.obolibrary.org/obo/SO_0000306')
|
577
577
|
|
578
578
|
@classmethod
|
579
579
|
def CpG_island(cls):
|
580
580
|
"""Regions of a few hundred to a few thousand bases in vertebrate genomes that are relatively GC and CpG rich; they are typically unmethylated and often found near the 5' ends of genes. (cls, SO:rd)
|
581
581
|
(http://purl.obolibrary.org/obo/SO_0000307)
|
582
582
|
"""
|
583
|
-
return
|
583
|
+
return _namespace_SOFA('http://purl.obolibrary.org/obo/SO_0000307')
|
584
584
|
|
585
585
|
@classmethod
|
586
586
|
def direct_repeat(cls):
|
587
587
|
"""A repeat where the same sequence is repeated in the same direction. Example: GCTGA-----GCTGA. (cls, SO:ke)
|
588
588
|
(http://purl.obolibrary.org/obo/SO_0000314)
|
589
589
|
"""
|
590
|
-
return
|
590
|
+
return _namespace_SOFA('http://purl.obolibrary.org/obo/SO_0000314')
|
591
591
|
|
592
592
|
@classmethod
|
593
593
|
def TSS(cls):
|
594
594
|
"""The first base where RNA polymerase begins to synthesize the RNA transcript. (cls, SO:ke)
|
595
595
|
(http://purl.obolibrary.org/obo/SO_0000315)
|
596
596
|
"""
|
597
|
-
return
|
597
|
+
return _namespace_SOFA('http://purl.obolibrary.org/obo/SO_0000315')
|
598
598
|
|
599
599
|
@classmethod
|
600
600
|
def CDS(cls):
|
601
601
|
"""A contiguous sequence which begins with, and includes, a start codon and ends with, and includes, a stop codon. (cls, SO:ma)
|
602
602
|
(http://purl.obolibrary.org/obo/SO_0000316)
|
603
603
|
"""
|
604
|
-
return
|
604
|
+
return _namespace_SOFA('http://purl.obolibrary.org/obo/SO_0000316')
|
605
605
|
|
606
606
|
@classmethod
|
607
607
|
def start_codon(cls):
|
608
608
|
"""First codon to be translated by a ribosome. (cls, SO:ke)
|
609
609
|
(http://purl.obolibrary.org/obo/SO_0000318)
|
610
610
|
"""
|
611
|
-
return
|
611
|
+
return _namespace_SOFA('http://purl.obolibrary.org/obo/SO_0000318')
|
612
612
|
|
613
613
|
@classmethod
|
614
614
|
def stop_codon(cls):
|
615
615
|
"""In mRNA, a set of three nucleotides that indicates the end of information for protein synthesis. (cls, SO:ke)
|
616
616
|
(http://purl.obolibrary.org/obo/SO_0000319)
|
617
617
|
"""
|
618
|
-
return
|
618
|
+
return _namespace_SOFA('http://purl.obolibrary.org/obo/SO_0000319')
|
619
619
|
|
620
620
|
@classmethod
|
621
621
|
def tag(cls):
|
622
622
|
"""A nucleotide sequence that may be used to identify a larger sequence. (cls, SO:ke)
|
623
623
|
(http://purl.obolibrary.org/obo/SO_0000324)
|
624
624
|
"""
|
625
|
-
return
|
625
|
+
return _namespace_SOFA('http://purl.obolibrary.org/obo/SO_0000324')
|
626
626
|
|
627
627
|
@classmethod
|
628
628
|
def rRNA_large_subunit_primary_transcript(cls):
|
629
629
|
"""A primary transcript encoding a large ribosomal subunit RNA. (cls, SO:ke)
|
630
630
|
(http://purl.obolibrary.org/obo/SO_0000325)
|
631
631
|
"""
|
632
|
-
return
|
632
|
+
return _namespace_SOFA('http://purl.obolibrary.org/obo/SO_0000325')
|
633
633
|
|
634
634
|
@classmethod
|
635
635
|
def SAGE_tag(cls):
|
636
636
|
"""A short diagnostic sequence tag, serial analysis of gene expression (cls, SAGE), that allows the quantitative and simultaneous analysis of a large number of transcripts. (http://www.ncbi.nlm.nih.gov/entrez/query.fcgi?cmd=Retrieve&db=PubMed&list_uids=7570003&dopt=Abstract)
|
637
637
|
(http://purl.obolibrary.org/obo/SO_0000326)
|
638
638
|
"""
|
639
|
-
return
|
639
|
+
return _namespace_SOFA('http://purl.obolibrary.org/obo/SO_0000326')
|
640
640
|
|
641
641
|
@classmethod
|
642
642
|
def conserved_region(cls):
|
643
643
|
"""Region of sequence similarity by descent from a common ancestor. (cls, SO:ke)
|
644
644
|
(http://purl.obolibrary.org/obo/SO_0000330)
|
645
645
|
"""
|
646
|
-
return
|
646
|
+
return _namespace_SOFA('http://purl.obolibrary.org/obo/SO_0000330')
|
647
647
|
|
648
648
|
@classmethod
|
649
649
|
def STS(cls):
|
650
650
|
"""Short (cls, typically a few hundred base pairs) DNA sequence that has a single occurrence in a genome and whose location and base sequence are known. (http://www.biospace.com)
|
651
651
|
(http://purl.obolibrary.org/obo/SO_0000331)
|
652
652
|
"""
|
653
|
-
return
|
653
|
+
return _namespace_SOFA('http://purl.obolibrary.org/obo/SO_0000331')
|
654
654
|
|
655
655
|
@classmethod
|
656
656
|
def coding_conserved_region(cls):
|
657
657
|
"""Coding region of sequence similarity by descent from a common ancestor. (cls, SO:ke)
|
658
658
|
(http://purl.obolibrary.org/obo/SO_0000332)
|
659
659
|
"""
|
660
|
-
return
|
660
|
+
return _namespace_SOFA('http://purl.obolibrary.org/obo/SO_0000332')
|
661
661
|
|
662
662
|
@classmethod
|
663
663
|
def exon_junction(cls):
|
664
664
|
"""The boundary between two exons in a processed transcript. (cls, SO:ke)
|
665
665
|
(http://purl.obolibrary.org/obo/SO_0000333)
|
666
666
|
"""
|
667
|
-
return
|
667
|
+
return _namespace_SOFA('http://purl.obolibrary.org/obo/SO_0000333')
|
668
668
|
|
669
669
|
@classmethod
|
670
670
|
def nc_conserved_region(cls):
|
671
671
|
"""Non-coding region of sequence similarity by descent from a common ancestor. (cls, SO:ke)
|
672
672
|
(http://purl.obolibrary.org/obo/SO_0000334)
|
673
673
|
"""
|
674
|
-
return
|
674
|
+
return _namespace_SOFA('http://purl.obolibrary.org/obo/SO_0000334')
|
675
675
|
|
676
676
|
@classmethod
|
677
677
|
def pseudogene(cls):
|
678
678
|
"""A sequence that closely resembles a known functional gene, at another locus within a genome, that is non-functional as a consequence of (cls, usually several) mutations that prevent either its transcription or translation (or both). In general, pseudogenes result from either reverse transcription of a transcript of their \"normal\" paralog (SO:0000043) (in which case the pseudogene typically lacks introns and includes a poly(A) tail) or from recombination (SO:0000044) (in which case the pseudogene is typically a tandem duplication of its \"normal\" paralog). (http://www.ucl.ac.uk/~ucbhjow/b241/glossary.html)
|
679
679
|
(http://purl.obolibrary.org/obo/SO_0000336)
|
680
680
|
"""
|
681
|
-
return
|
681
|
+
return _namespace_SOFA('http://purl.obolibrary.org/obo/SO_0000336')
|
682
682
|
|
683
683
|
@classmethod
|
684
684
|
def RNAi_reagent(cls):
|
685
685
|
"""A double stranded RNA duplex, at least 20bp long, used experimentally to inhibit gene function by RNA interference. (cls, SO:rd)
|
686
686
|
(http://purl.obolibrary.org/obo/SO_0000337)
|
687
687
|
"""
|
688
|
-
return
|
688
|
+
return _namespace_SOFA('http://purl.obolibrary.org/obo/SO_0000337')
|
689
689
|
|
690
690
|
@classmethod
|
691
691
|
def chromosome(cls):
|
692
692
|
"""Structural unit composed of a nucleic acid molecule which controls its own replication through the interaction of specific proteins at one or more origins of replication. (cls, SO:ma)
|
693
693
|
(http://purl.obolibrary.org/obo/SO_0000340)
|
694
694
|
"""
|
695
|
-
return
|
695
|
+
return _namespace_SOFA('http://purl.obolibrary.org/obo/SO_0000340')
|
696
696
|
|
697
697
|
@classmethod
|
698
698
|
def chromosome_band(cls):
|
699
699
|
"""A cytologically distinguishable feature of a chromosome, often made visible by staining, and usually alternating light and dark. (cls, SO:ma)
|
700
700
|
(http://purl.obolibrary.org/obo/SO_0000341)
|
701
701
|
"""
|
702
|
-
return
|
702
|
+
return _namespace_SOFA('http://purl.obolibrary.org/obo/SO_0000341')
|
703
703
|
|
704
704
|
@classmethod
|
705
705
|
def match(cls):
|
706
706
|
"""A region of sequence, aligned to another sequence with some statistical significance, using an algorithm such as BLAST or SIM4. (cls, SO:ke)
|
707
707
|
(http://purl.obolibrary.org/obo/SO_0000343)
|
708
708
|
"""
|
709
|
-
return
|
709
|
+
return _namespace_SOFA('http://purl.obolibrary.org/obo/SO_0000343')
|
710
710
|
|
711
711
|
@classmethod
|
712
712
|
def splice_enhancer(cls):
|
713
713
|
"""Region of a transcript that regulates splicing. (cls, SO:ke)
|
714
714
|
(http://purl.obolibrary.org/obo/SO_0000344)
|
715
715
|
"""
|
716
|
-
return
|
716
|
+
return _namespace_SOFA('http://purl.obolibrary.org/obo/SO_0000344')
|
717
717
|
|
718
718
|
@classmethod
|
719
719
|
def EST(cls):
|
720
720
|
"""A tag produced from a single sequencing read from a cDNA clone or PCR product; typically a few hundred base pairs long. (cls, SO:ke)
|
721
721
|
(http://purl.obolibrary.org/obo/SO_0000345)
|
722
722
|
"""
|
723
|
-
return
|
723
|
+
return _namespace_SOFA('http://purl.obolibrary.org/obo/SO_0000345')
|
724
724
|
|
725
725
|
@classmethod
|
726
726
|
def nucleotide_match(cls):
|
727
727
|
"""A match against a nucleotide sequence. (cls, SO:ke)
|
728
728
|
(http://purl.obolibrary.org/obo/SO_0000347)
|
729
729
|
"""
|
730
|
-
return
|
730
|
+
return _namespace_SOFA('http://purl.obolibrary.org/obo/SO_0000347')
|
731
731
|
|
732
732
|
@classmethod
|
733
733
|
def protein_match(cls):
|
734
734
|
"""A match against a protein sequence. (cls, SO:ke)
|
735
735
|
(http://purl.obolibrary.org/obo/SO_0000349)
|
736
736
|
"""
|
737
|
-
return
|
737
|
+
return _namespace_SOFA('http://purl.obolibrary.org/obo/SO_0000349')
|
738
738
|
|
739
739
|
@classmethod
|
740
740
|
def sequence_assembly(cls):
|
741
741
|
"""A sequence of nucleotides that has been algorithmically derived from an alignment of two or more different sequences. (cls, SO:ma)
|
742
742
|
(http://purl.obolibrary.org/obo/SO_0000353)
|
743
743
|
"""
|
744
|
-
return
|
744
|
+
return _namespace_SOFA('http://purl.obolibrary.org/obo/SO_0000353')
|
745
745
|
|
746
746
|
@classmethod
|
747
747
|
def codon(cls):
|
748
748
|
"""A set of (cls, usually) three nucleotide bases in a DNA or RNA sequence, which together code for a unique amino acid or the termination of translation and are contained within the CDS. (http://www.everythingbio.com/glos/definition.php?word=codon, SO:ke)
|
749
749
|
(http://purl.obolibrary.org/obo/SO_0000360)
|
750
750
|
"""
|
751
|
-
return
|
751
|
+
return _namespace_SOFA('http://purl.obolibrary.org/obo/SO_0000360')
|
752
752
|
|
753
753
|
@classmethod
|
754
754
|
def insertion_site(cls):
|
755
755
|
"""The junction where an insertion occurred. (cls, SO:ke)
|
756
756
|
(http://purl.obolibrary.org/obo/SO_0000366)
|
757
757
|
"""
|
758
|
-
return
|
758
|
+
return _namespace_SOFA('http://purl.obolibrary.org/obo/SO_0000366')
|
759
759
|
|
760
760
|
@classmethod
|
761
761
|
def transposable_element_insertion_site(cls):
|
762
762
|
"""The junction in a genome where a transposable_element has inserted. (cls, SO:ke)
|
763
763
|
(http://purl.obolibrary.org/obo/SO_0000368)
|
764
764
|
"""
|
765
|
-
return
|
765
|
+
return _namespace_SOFA('http://purl.obolibrary.org/obo/SO_0000368')
|
766
766
|
|
767
767
|
@classmethod
|
768
768
|
def small_regulatory_ncRNA(cls):
|
769
769
|
"""A non-coding RNA, usually with a specific secondary structure, that acts to regulate gene expression. (cls, SO:ma)
|
770
770
|
(http://purl.obolibrary.org/obo/SO_0000370)
|
771
771
|
"""
|
772
|
-
return
|
772
|
+
return _namespace_SOFA('http://purl.obolibrary.org/obo/SO_0000370')
|
773
773
|
|
774
774
|
@classmethod
|
775
775
|
def enzymatic_RNA(cls):
|
776
776
|
"""An RNA sequence that has catalytic activity with or without an associated ribonucleoprotein. (cls, RSC:cb)
|
777
777
|
(http://purl.obolibrary.org/obo/SO_0000372)
|
778
778
|
"""
|
779
|
-
return
|
779
|
+
return _namespace_SOFA('http://purl.obolibrary.org/obo/SO_0000372')
|
780
780
|
|
781
781
|
@classmethod
|
782
782
|
def ribozyme(cls):
|
783
783
|
"""An RNA with catalytic activity. (cls, SO:ma)
|
784
784
|
(http://purl.obolibrary.org/obo/SO_0000374)
|
785
785
|
"""
|
786
|
-
return
|
786
|
+
return _namespace_SOFA('http://purl.obolibrary.org/obo/SO_0000374')
|
787
787
|
|
788
788
|
@classmethod
|
789
789
|
def rRNA_5_8S(cls):
|
790
790
|
"""5_8S ribosomal RNA (cls, 5. 8S rRNA) is a component of the large subunit of the eukaryotic ribosome. It is transcribed by RNA polymerase I as part of the 45S precursor that also contains 18S and 28S rRNA. Functionally, it is thought that 5.8S rRNA may be involved in ribosome translocation. It is also known to form covalent linkage to the p53 tumour suppressor protein. 5_8S rRNA is also found in archaea. (http://www.sanger.ac.uk/cgi-bin/Rfam/getacc?RF00002)
|
791
791
|
(http://purl.obolibrary.org/obo/SO_0000375)
|
792
792
|
"""
|
793
|
-
return
|
793
|
+
return _namespace_SOFA('http://purl.obolibrary.org/obo/SO_0000375')
|
794
794
|
|
795
795
|
@classmethod
|
796
796
|
def hammerhead_ribozyme(cls):
|
797
797
|
"""A small catalytic RNA motif that catalyzes self-cleavage reaction. Its name comes from its secondary structure which resembles a carpenter's hammer. The hammerhead ribozyme is involved in the replication of some viroid and some satellite RNAs. (cls, PMID:2436805)
|
798
798
|
(http://purl.obolibrary.org/obo/SO_0000380)
|
799
799
|
"""
|
800
|
-
return
|
800
|
+
return _namespace_SOFA('http://purl.obolibrary.org/obo/SO_0000380')
|
801
801
|
|
802
802
|
@classmethod
|
803
803
|
def RNase_MRP_RNA(cls):
|
804
804
|
"""The RNA molecule essential for the catalytic activity of RNase MRP, an enzymatically active ribonucleoprotein with two distinct roles in eukaryotes. In mitochondria it plays a direct role in the initiation of mitochondrial DNA replication. In the nucleus it is involved in precursor rRNA processing, where it cleaves the internal transcribed spacer 1 between 18S and 5.8S rRNAs. (cls, http://www.sanger.ac.uk/cgi-bin/Rfam/getacc?RF00030)
|
805
805
|
(http://purl.obolibrary.org/obo/SO_0000385)
|
806
806
|
"""
|
807
|
-
return
|
807
|
+
return _namespace_SOFA('http://purl.obolibrary.org/obo/SO_0000385')
|
808
808
|
|
809
809
|
@classmethod
|
810
810
|
def RNase_P_RNA(cls):
|
811
811
|
"""The RNA component of Ribonuclease P (cls, RNase P), a ubiquitous endoribonuclease, found in archaea, bacteria and eukarya as well as chloroplasts and mitochondria. Its best characterized activity is the generation of mature 5 prime ends of tRNAs by cleaving the 5 prime leader elements of precursor-tRNAs. Cellular RNase Ps are ribonucleoproteins. RNA from bacterial RNase Ps retains its catalytic activity in the absence of the protein subunit, i.e. it is a ribozyme. Isolated eukaryotic and archaeal RNase P RNA has not been shown to retain its catalytic function, but is still essential for the catalytic activity of the holoenzyme. Although the archaeal and eukaryotic holoenzymes have a much greater protein content than the bacterial ones, the RNA cores from all the three lineages are homologous. Helices corresponding to P1, P2, P3, P4, and P10/11 are common to all cellular RNase P RNAs. Yet, there is considerable sequence variation, particularly among the eukaryotic RNAs. (http://www.sanger.ac.uk/cgi-bin/Rfam/getacc?RF00010)
|
812
812
|
(http://purl.obolibrary.org/obo/SO_0000386)
|
813
813
|
"""
|
814
|
-
return
|
814
|
+
return _namespace_SOFA('http://purl.obolibrary.org/obo/SO_0000386')
|
815
815
|
|
816
816
|
@classmethod
|
817
817
|
def telomerase_RNA(cls):
|
818
818
|
"""The RNA component of telomerase, a reverse transcriptase that synthesizes telomeric DNA. (cls, http://www.sanger.ac.uk/cgi-bin/Rfam/getacc?RF00025)
|
819
819
|
(http://purl.obolibrary.org/obo/SO_0000390)
|
820
820
|
"""
|
821
|
-
return
|
821
|
+
return _namespace_SOFA('http://purl.obolibrary.org/obo/SO_0000390')
|
822
822
|
|
823
823
|
@classmethod
|
824
824
|
def U1_snRNA(cls):
|
825
825
|
"""U1 is a small nuclear RNA (cls, snRNA) component of the spliceosome (involved in pre-mRNA splicing). Its 5' end forms complementary base pairs with the 5' splice junction, thus defining the 5' donor site of an intron. There are significant differences in sequence and secondary structure between metazoan and yeast U1 snRNAs, the latter being much longer (568 nucleotides as compared to 164 nucleotides in human). Nevertheless, secondary structure predictions suggest that all U1 snRNAs share a 'common core' consisting of helices I, II, the proximal region of III, and IV. (http://www.sanger.ac.uk/cgi-bin/Rfam/getacc?RF00003)
|
826
826
|
(http://purl.obolibrary.org/obo/SO_0000391)
|
827
827
|
"""
|
828
|
-
return
|
828
|
+
return _namespace_SOFA('http://purl.obolibrary.org/obo/SO_0000391')
|
829
829
|
|
830
830
|
@classmethod
|
831
831
|
def U2_snRNA(cls):
|
832
832
|
"""U2 is a small nuclear RNA (cls, snRNA) component of the spliceosome (involved in pre-mRNA splicing). Complementary binding between U2 snRNA (in an area lying towards the 5' end but 3' to hairpin I) and the branchpoint sequence (BPS) of the intron results in the bulging out of an unpaired adenine, on the BPS, which initiates a nucleophilic attack at the intronic 5' splice site, thus starting the first of two transesterification reactions that mediate splicing. (http://www.sanger.ac.uk/cgi-bin/Rfam/getacc?RF00004)
|
833
833
|
(http://purl.obolibrary.org/obo/SO_0000392)
|
834
834
|
"""
|
835
|
-
return
|
835
|
+
return _namespace_SOFA('http://purl.obolibrary.org/obo/SO_0000392')
|
836
836
|
|
837
837
|
@classmethod
|
838
838
|
def U4_snRNA(cls):
|
839
839
|
"""U4 small nuclear RNA (cls, U4 snRNA) is a component of the major U2-dependent spliceosome. It forms a duplex with U6, and with each splicing round, it is displaced from U6 (and the spliceosome) in an ATP-dependent manner, allowing U6 to refold and create the active site for splicing catalysis. A recycling process involving protein Prp24 re-anneals U4 and U6. (http://www.sanger.ac.uk/cgi-bin/Rfam/getacc?RF00015)
|
840
840
|
(http://purl.obolibrary.org/obo/SO_0000393)
|
841
841
|
"""
|
842
|
-
return
|
842
|
+
return _namespace_SOFA('http://purl.obolibrary.org/obo/SO_0000393')
|
843
843
|
|
844
844
|
@classmethod
|
845
845
|
def U4atac_snRNA(cls):
|
846
846
|
"""An snRNA required for the splicing of the minor U12-dependent class of eukaryotic nuclear introns. It forms a base paired complex with U6atac_snRNA (cls, SO:0000397). (PMID:=12409455)
|
847
847
|
(http://purl.obolibrary.org/obo/SO_0000394)
|
848
848
|
"""
|
849
|
-
return
|
849
|
+
return _namespace_SOFA('http://purl.obolibrary.org/obo/SO_0000394')
|
850
850
|
|
851
851
|
@classmethod
|
852
852
|
def U5_snRNA(cls):
|
853
853
|
"""U5 RNA is a component of both types of known spliceosome. The precise function of this molecule is unknown, though it is known that the 5' loop is required for splice site selection and p220 binding, and that both the 3' stem-loop and the Sm site are important for Sm protein binding and cap methylation. (cls, http://www.sanger.ac.uk/cgi-bin/Rfam/getacc?RF00020)
|
854
854
|
(http://purl.obolibrary.org/obo/SO_0000395)
|
855
855
|
"""
|
856
|
-
return
|
856
|
+
return _namespace_SOFA('http://purl.obolibrary.org/obo/SO_0000395')
|
857
857
|
|
858
858
|
@classmethod
|
859
859
|
def U6_snRNA(cls):
|
860
860
|
"""U6 snRNA is a component of the spliceosome which is involved in splicing pre-mRNA. The putative secondary structure consensus base pairing is confined to a short 5' stem loop, but U6 snRNA is thought to form extensive base-pair interactions with U4 snRNA. (cls, http://www.sanger.ac.uk/cgi-bin/Rfam/getacc?RF00015)
|
861
861
|
(http://purl.obolibrary.org/obo/SO_0000396)
|
862
862
|
"""
|
863
|
-
return
|
863
|
+
return _namespace_SOFA('http://purl.obolibrary.org/obo/SO_0000396')
|
864
864
|
|
865
865
|
@classmethod
|
866
866
|
def U6atac_snRNA(cls):
|
867
867
|
"""U6atac_snRNA is an snRNA required for the splicing of the minor U12-dependent class of eukaryotic nuclear introns. It forms a base paired complex with U4atac_snRNA (cls, SO:0000394). (http://www.ncbi.nlm.nih.gov/entrez/query.fcgi?cmd=retrieve&db=pubmed&list_uids=12409455&dopt=Abstract)
|
868
868
|
(http://purl.obolibrary.org/obo/SO_0000397)
|
869
869
|
"""
|
870
|
-
return
|
870
|
+
return _namespace_SOFA('http://purl.obolibrary.org/obo/SO_0000397')
|
871
871
|
|
872
872
|
@classmethod
|
873
873
|
def U11_snRNA(cls):
|
874
874
|
"""U11 snRNA plays a role in splicing of the minor U12-dependent class of eukaryotic nuclear introns, similar to U1 snRNA in the major class spliceosome it base pairs to the conserved 5' splice site sequence. (cls, PMID:9622129)
|
875
875
|
(http://purl.obolibrary.org/obo/SO_0000398)
|
876
876
|
"""
|
877
|
-
return
|
877
|
+
return _namespace_SOFA('http://purl.obolibrary.org/obo/SO_0000398')
|
878
878
|
|
879
879
|
@classmethod
|
880
880
|
def U12_snRNA(cls):
|
881
881
|
"""The U12 small nuclear (cls, snRNA), together with U4atac/U6atac, U5, and U11 snRNAs and associated proteins, forms a spliceosome that cleaves a divergent class of low-abundance pre-mRNA introns. (http://www.sanger.ac.uk/cgi-bin/Rfam/getacc?RF00007)
|
882
882
|
(http://purl.obolibrary.org/obo/SO_0000399)
|
883
883
|
"""
|
884
|
-
return
|
884
|
+
return _namespace_SOFA('http://purl.obolibrary.org/obo/SO_0000399')
|
885
885
|
|
886
886
|
@classmethod
|
887
887
|
def U14_snoRNA(cls):
|
888
888
|
"""U14 small nucleolar RNA (cls, U14 snoRNA) is required for early cleavages of eukaryotic precursor rRNAs. In yeasts, this molecule possess a stem-loop region (known as the Y-domain) which is essential for function. A similar structure, but with a different consensus sequence, is found in plants, but is absent in vertebrates. (http://www.sanger.ac.uk/cgi-bin/Rfam/getacc?RF00016, PMID:2551119)
|
889
889
|
(http://purl.obolibrary.org/obo/SO_0000403)
|
890
890
|
"""
|
891
|
-
return
|
891
|
+
return _namespace_SOFA('http://purl.obolibrary.org/obo/SO_0000403')
|
892
892
|
|
893
893
|
@classmethod
|
894
894
|
def vault_RNA(cls):
|
895
895
|
"""A family of RNAs are found as part of the enigmatic vault ribonucleoprotein complex. The complex consists of a major vault protein (cls, MVP), two minor vault proteins (VPARP and TEP1), and several small untranslated RNA molecules. It has been suggested that the vault complex is involved in drug resistance. (http://www.sanger.ac.uk/cgi-bin/Rfam/getacc?RF00006)
|
896
896
|
(http://purl.obolibrary.org/obo/SO_0000404)
|
897
897
|
"""
|
898
|
-
return
|
898
|
+
return _namespace_SOFA('http://purl.obolibrary.org/obo/SO_0000404')
|
899
899
|
|
900
900
|
@classmethod
|
901
901
|
def Y_RNA(cls):
|
902
902
|
"""Y RNAs are components of the Ro ribonucleoprotein particle (cls, Ro RNP), in association with Ro60 and La proteins. The Y RNAs and Ro60 and La proteins are well conserved, but the function of the Ro RNP is not known. In humans the RNA component can be one of four small RNAs: hY1, hY3, hY4 and hY5. These small RNAs are predicted to fold into a conserved secondary structure containing three stem structures. The largest of the four, hY1, contains an additional hairpin. (http://www.sanger.ac.uk/cgi-bin/Rfam/getacc?RF00019)
|
903
903
|
(http://purl.obolibrary.org/obo/SO_0000405)
|
904
904
|
"""
|
905
|
-
return
|
905
|
+
return _namespace_SOFA('http://purl.obolibrary.org/obo/SO_0000405')
|
906
906
|
|
907
907
|
@classmethod
|
908
908
|
def rRNA_18S(cls):
|
909
909
|
"""A large polynucleotide in eukaryotes, which functions as the small subunit of the ribosome. (cls, SO:ke)
|
910
910
|
(http://purl.obolibrary.org/obo/SO_0000407)
|
911
911
|
"""
|
912
|
-
return
|
912
|
+
return _namespace_SOFA('http://purl.obolibrary.org/obo/SO_0000407')
|
913
913
|
|
914
914
|
@classmethod
|
915
915
|
def binding_site(cls):
|
916
916
|
"""A biological_region of sequence that, in the molecule, interacts selectively and non-covalently with other molecules. A region on the surface of a molecule that may interact with another molecule. When applied to polypeptides: Amino acids involved in binding or interactions. It can also apply to an amino acid bond which is represented by the positions of the two flanking amino acids. (cls, EBIBS:GAR, SO:ke)
|
917
917
|
(http://purl.obolibrary.org/obo/SO_0000409)
|
918
918
|
"""
|
919
|
-
return
|
919
|
+
return _namespace_SOFA('http://purl.obolibrary.org/obo/SO_0000409')
|
920
920
|
|
921
921
|
@classmethod
|
922
922
|
def protein_binding_site(cls):
|
923
923
|
"""A binding site that, in the molecule, interacts selectively and non-covalently with polypeptide molecules. (cls, SO:ke)
|
924
924
|
(http://purl.obolibrary.org/obo/SO_0000410)
|
925
925
|
"""
|
926
|
-
return
|
926
|
+
return _namespace_SOFA('http://purl.obolibrary.org/obo/SO_0000410')
|
927
927
|
|
928
928
|
@classmethod
|
929
929
|
def restriction_fragment(cls):
|
930
930
|
"""A region of polynucleotide sequence produced by digestion with a restriction endonuclease. (cls, SO:ke)
|
931
931
|
(http://purl.obolibrary.org/obo/SO_0000412)
|
932
932
|
"""
|
933
|
-
return
|
933
|
+
return _namespace_SOFA('http://purl.obolibrary.org/obo/SO_0000412')
|
934
934
|
|
935
935
|
@classmethod
|
936
936
|
def sequence_difference(cls):
|
937
937
|
"""A region where the sequence differs from that of a specified sequence. (cls, SO:ke)
|
938
938
|
(http://purl.obolibrary.org/obo/SO_0000413)
|
939
939
|
"""
|
940
|
-
return
|
940
|
+
return _namespace_SOFA('http://purl.obolibrary.org/obo/SO_0000413')
|
941
941
|
|
942
942
|
@classmethod
|
943
943
|
def signal_peptide(cls):
|
944
944
|
"""The signal_peptide is a short region of the peptide located at the N-terminus that directs the protein to be secreted or part of membrane components. (cls, http://www.ebi.ac.uk/embl/Documentation/FT_definitions/feature_table.html)
|
945
945
|
(http://purl.obolibrary.org/obo/SO_0000418)
|
946
946
|
"""
|
947
|
-
return
|
947
|
+
return _namespace_SOFA('http://purl.obolibrary.org/obo/SO_0000418')
|
948
948
|
|
949
949
|
@classmethod
|
950
950
|
def mature_protein_region(cls):
|
951
951
|
"""The polypeptide sequence that remains when the cleaved peptide regions have been cleaved from the immature peptide. (cls, EBIBS:GAR, http://www.ebi.ac.uk/embl/Documentation/FT_definitions/feature_table.html, SO:cb)
|
952
952
|
(http://purl.obolibrary.org/obo/SO_0000419)
|
953
953
|
"""
|
954
|
-
return
|
954
|
+
return _namespace_SOFA('http://purl.obolibrary.org/obo/SO_0000419')
|
955
955
|
|
956
956
|
@classmethod
|
957
957
|
def ARS(cls):
|
958
958
|
"""A sequence that can autonomously replicate, as a plasmid, when transformed into a bacterial host. (cls, SO:ma)
|
959
959
|
(http://purl.obolibrary.org/obo/SO_0000436)
|
960
960
|
"""
|
961
|
-
return
|
961
|
+
return _namespace_SOFA('http://purl.obolibrary.org/obo/SO_0000436')
|
962
962
|
|
963
963
|
@classmethod
|
964
964
|
def ss_oligo(cls):
|
965
965
|
"""A single stranded oligonucleotide. (cls, SO:ke)
|
966
966
|
(http://purl.obolibrary.org/obo/SO_0000441)
|
967
967
|
"""
|
968
|
-
return
|
968
|
+
return _namespace_SOFA('http://purl.obolibrary.org/obo/SO_0000441')
|
969
969
|
|
970
970
|
@classmethod
|
971
971
|
def ds_oligo(cls):
|
972
972
|
"""A double stranded oligonucleotide. (cls, SO:ke)
|
973
973
|
(http://purl.obolibrary.org/obo/SO_0000442)
|
974
974
|
"""
|
975
|
-
return
|
975
|
+
return _namespace_SOFA('http://purl.obolibrary.org/obo/SO_0000442')
|
976
976
|
|
977
977
|
@classmethod
|
978
978
|
def rasiRNA(cls):
|
979
979
|
"""A 17-28-nt, small interfering RNA derived from transcripts of repetitive elements. (cls, http://www.developmentalcell.com/content/article/abstract?uid=PIIS1534580703002284)
|
980
980
|
(http://purl.obolibrary.org/obo/SO_0000454)
|
981
981
|
"""
|
982
|
-
return
|
982
|
+
return _namespace_SOFA('http://purl.obolibrary.org/obo/SO_0000454')
|
983
983
|
|
984
984
|
@classmethod
|
985
985
|
def pseudogenic_region(cls):
|
986
986
|
"""A non-functional descendent of a functional entity. (cls, SO:cjm)
|
987
987
|
(http://purl.obolibrary.org/obo/SO_0000462)
|
988
988
|
"""
|
989
|
-
return
|
989
|
+
return _namespace_SOFA('http://purl.obolibrary.org/obo/SO_0000462')
|
990
990
|
|
991
991
|
@classmethod
|
992
992
|
def decayed_exon(cls):
|
993
993
|
"""A non-functional descendant of an exon. (cls, SO:ke)
|
994
994
|
(http://purl.obolibrary.org/obo/SO_0000464)
|
995
995
|
"""
|
996
|
-
return
|
996
|
+
return _namespace_SOFA('http://purl.obolibrary.org/obo/SO_0000464')
|
997
997
|
|
998
998
|
@classmethod
|
999
999
|
def golden_path_fragment(cls):
|
1000
1000
|
"""One of the pieces of sequence that make up a golden path. (cls, SO:rd)
|
1001
1001
|
(http://purl.obolibrary.org/obo/SO_0000468)
|
1002
1002
|
"""
|
1003
|
-
return
|
1003
|
+
return _namespace_SOFA('http://purl.obolibrary.org/obo/SO_0000468')
|
1004
1004
|
|
1005
1005
|
@classmethod
|
1006
1006
|
def tiling_path(cls):
|
1007
1007
|
"""A set of regions which overlap with minimal polymorphism to form a linear sequence. (cls, SO:cjm)
|
1008
1008
|
(http://purl.obolibrary.org/obo/SO_0000472)
|
1009
1009
|
"""
|
1010
|
-
return
|
1010
|
+
return _namespace_SOFA('http://purl.obolibrary.org/obo/SO_0000472')
|
1011
1011
|
|
1012
1012
|
@classmethod
|
1013
1013
|
def tiling_path_fragment(cls):
|
1014
1014
|
"""A piece of sequence that makes up a tiling_path (cls, SO:0000472). (SO:ke)
|
1015
1015
|
(http://purl.obolibrary.org/obo/SO_0000474)
|
1016
1016
|
"""
|
1017
|
-
return
|
1017
|
+
return _namespace_SOFA('http://purl.obolibrary.org/obo/SO_0000474')
|
1018
1018
|
|
1019
1019
|
@classmethod
|
1020
1020
|
def nc_primary_transcript(cls):
|
1021
1021
|
"""A primary transcript that is never translated into a protein. (cls, SO:ke)
|
1022
1022
|
(http://purl.obolibrary.org/obo/SO_0000483)
|
1023
1023
|
"""
|
1024
|
-
return
|
1024
|
+
return _namespace_SOFA('http://purl.obolibrary.org/obo/SO_0000483')
|
1025
1025
|
|
1026
1026
|
@classmethod
|
1027
1027
|
def three_prime_coding_exon_noncoding_region(cls):
|
1028
1028
|
"""The sequence of the 3' exon that is not coding. (cls, SO:ke)
|
1029
1029
|
(http://purl.obolibrary.org/obo/SO_0000484)
|
1030
1030
|
"""
|
1031
|
-
return
|
1031
|
+
return _namespace_SOFA('http://purl.obolibrary.org/obo/SO_0000484')
|
1032
1032
|
|
1033
1033
|
@classmethod
|
1034
1034
|
def five_prime_coding_exon_noncoding_region(cls):
|
1035
1035
|
"""The sequence of the 5' exon preceding the start codon. (cls, SO:ke)
|
1036
1036
|
(http://purl.obolibrary.org/obo/SO_0000486)
|
1037
1037
|
"""
|
1038
|
-
return
|
1038
|
+
return _namespace_SOFA('http://purl.obolibrary.org/obo/SO_0000486')
|
1039
1039
|
|
1040
1040
|
@classmethod
|
1041
1041
|
def virtual_sequence(cls):
|
1042
1042
|
"""A continuous piece of sequence similar to the 'virtual contig' concept of the Ensembl database. (cls, SO:ke)
|
1043
1043
|
(http://purl.obolibrary.org/obo/SO_0000499)
|
1044
1044
|
"""
|
1045
|
-
return
|
1045
|
+
return _namespace_SOFA('http://purl.obolibrary.org/obo/SO_0000499')
|
1046
1046
|
|
1047
1047
|
@classmethod
|
1048
1048
|
def transcribed_region(cls):
|
1049
1049
|
"""A region of sequence that is transcribed. This region may cover the transcript of a gene, it may emcompas the sequence covered by all of the transcripts of a alternately spliced gene, or it may cover the region transcribed by a polycistronic transcript. A gene may have 1 or more transcribed regions and a transcribed_region may belong to one or more genes. (cls, SO:ke)
|
1050
1050
|
(http://purl.obolibrary.org/obo/SO_0000502)
|
1051
1051
|
"""
|
1052
|
-
return
|
1052
|
+
return _namespace_SOFA('http://purl.obolibrary.org/obo/SO_0000502')
|
1053
1053
|
|
1054
1054
|
@classmethod
|
1055
1055
|
def polyA_signal_sequence(cls):
|
1056
1056
|
"""The recognition sequence necessary for endonuclease cleavage of an RNA transcript that is followed by polyadenylation; consensus=AATAAA. (cls, http://www.ebi.ac.uk/embl/Documentation/FT_definitions/feature_table.html)
|
1057
1057
|
(http://purl.obolibrary.org/obo/SO_0000551)
|
1058
1058
|
"""
|
1059
|
-
return
|
1059
|
+
return _namespace_SOFA('http://purl.obolibrary.org/obo/SO_0000551')
|
1060
1060
|
|
1061
1061
|
@classmethod
|
1062
1062
|
def polyA_site(cls):
|
1063
1063
|
"""The site on an RNA transcript to which will be added adenine residues by post-transcriptional polyadenylation. The boundary between the UTR and the polyA sequence. (cls, http://www.ebi.ac.uk/embl/Documentation/FT_definitions/feature_table.html)
|
1064
1064
|
(http://purl.obolibrary.org/obo/SO_0000553)
|
1065
1065
|
"""
|
1066
|
-
return
|
1066
|
+
return _namespace_SOFA('http://purl.obolibrary.org/obo/SO_0000553')
|
1067
1067
|
|
1068
1068
|
@classmethod
|
1069
1069
|
def centromere(cls):
|
1070
1070
|
"""A region of chromosome where the spindle fibers attach during mitosis and meiosis. (cls, SO:ke)
|
1071
1071
|
(http://purl.obolibrary.org/obo/SO_0000577)
|
1072
1072
|
"""
|
1073
|
-
return
|
1073
|
+
return _namespace_SOFA('http://purl.obolibrary.org/obo/SO_0000577')
|
1074
1074
|
|
1075
1075
|
@classmethod
|
1076
1076
|
def cap(cls):
|
1077
1077
|
"""A structure consisting of a 7-methylguanosine in 5'-5' triphosphate linkage with the first nucleotide of an mRNA. It is added post-transcriptionally, and is not encoded in the DNA. (cls, http://seqcore.brcf.med.umich.edu/doc/educ/dnapr/mbglossary/mbgloss.html)
|
1078
1078
|
(http://purl.obolibrary.org/obo/SO_0000581)
|
1079
1079
|
"""
|
1080
|
-
return
|
1080
|
+
return _namespace_SOFA('http://purl.obolibrary.org/obo/SO_0000581')
|
1081
1081
|
|
1082
1082
|
@classmethod
|
1083
1083
|
def group_I_intron(cls):
|
1084
1084
|
"""Group I catalytic introns are large self-splicing ribozymes. They catalyze their own excision from mRNA, tRNA and rRNA precursors in a wide range of organisms. The core secondary structure consists of 9 paired regions (cls, P1-P9). These fold to essentially two domains, the P4-P6 domain (formed from the stacking of P5, P4, P6 and P6a helices) and the P3-P9 domain (formed from the P8, P3, P7 and P9 helices). Group I catalytic introns often have long ORFs inserted in loop regions. (http://www.sanger.ac.uk/cgi-bin/Rfam/getacc?RF00028)
|
1085
1085
|
(http://purl.obolibrary.org/obo/SO_0000587)
|
1086
1086
|
"""
|
1087
|
-
return
|
1087
|
+
return _namespace_SOFA('http://purl.obolibrary.org/obo/SO_0000587')
|
1088
1088
|
|
1089
1089
|
@classmethod
|
1090
1090
|
def autocatalytically_spliced_intron(cls):
|
1091
1091
|
"""A self spliced intron. (cls, SO:ke)
|
1092
1092
|
(http://purl.obolibrary.org/obo/SO_0000588)
|
1093
1093
|
"""
|
1094
|
-
return
|
1094
|
+
return _namespace_SOFA('http://purl.obolibrary.org/obo/SO_0000588')
|
1095
1095
|
|
1096
1096
|
@classmethod
|
1097
1097
|
def SRP_RNA(cls):
|
1098
1098
|
"""The signal recognition particle (cls, SRP) is a universally conserved ribonucleoprotein. It is involved in the co-translational targeting of proteins to membranes. The eukaryotic SRP consists of a 300-nucleotide 7S RNA and six proteins: SRPs 72, 68, 54, 19, 14, and 9. Archaeal SRP consists of a 7S RNA and homologues of the eukaryotic SRP19 and SRP54 proteins. In most eubacteria, the SRP consists of a 4.5S RNA and the Ffh protein (a homologue of the eukaryotic SRP54 protein). Eukaryotic and archaeal 7S RNAs have very similar secondary structures, with eight helical elements. These fold into the Alu and S domains, separated by a long linker region. Eubacterial SRP is generally a simpler structure, with the M domain of Ffh bound to a region of the 4.5S RNA that corresponds to helix 8 of the eukaryotic and archaeal SRP S domain. Some Gram-positive bacteria (e.g. Bacillus subtilis), however, have a larger SRP RNA that also has an Alu domain. The Alu domain is thought to mediate the peptide chain elongation retardation function of the SRP. The universally conserved helix which interacts with the SRP54/Ffh M domain mediates signal sequence recognition. In eukaryotes and archaea, the SRP19-helix 6 complex is thought to be involved in SRP assembly and stabilizes helix 8 for SRP54 binding. (http://www.sanger.ac.uk/cgi-bin/Rfam/getacc?RF00017)
|
1099
1099
|
(http://purl.obolibrary.org/obo/SO_0000590)
|
1100
1100
|
"""
|
1101
|
-
return
|
1101
|
+
return _namespace_SOFA('http://purl.obolibrary.org/obo/SO_0000590')
|
1102
1102
|
|
1103
1103
|
@classmethod
|
1104
1104
|
def C_D_box_snoRNA(cls):
|
1105
1105
|
"""Most box C/D snoRNAs also contain long (cls, >10 nt) sequences complementary to rRNA. Boxes C and D, as well as boxes C' and D', are usually located in close proximity, and form a structure known as the box C/D motif. This motif is important for snoRNA stability, processing, nucleolar targeting and function. A small number of box C/D snoRNAs are involved in rRNA processing; most, however, are known or predicted to serve as guide RNAs in ribose methylation of rRNA. Targeting involves direct base pairing of the snoRNA at the rRNA site to be modified and selection of a rRNA nucleotide a fixed distance from box D or D'. (http://www.bio.umass.edu/biochem/rna-sequence/Yeast_snoRNA_Database/snoRNA_DataBase.html)
|
1106
1106
|
(http://purl.obolibrary.org/obo/SO_0000593)
|
1107
1107
|
"""
|
1108
|
-
return
|
1108
|
+
return _namespace_SOFA('http://purl.obolibrary.org/obo/SO_0000593')
|
1109
1109
|
|
1110
1110
|
@classmethod
|
1111
1111
|
def guide_RNA(cls):
|
1112
1112
|
"""A short 3'-uridylated RNA that can form a duplex (cls, except for its post-transcriptionally added oligo_U tail (SO:0000609)) with a stretch of mature edited mRNA. (http://www.rna.ucla.edu/index.html)
|
1113
1113
|
(http://purl.obolibrary.org/obo/SO_0000602)
|
1114
1114
|
"""
|
1115
|
-
return
|
1115
|
+
return _namespace_SOFA('http://purl.obolibrary.org/obo/SO_0000602')
|
1116
1116
|
|
1117
1117
|
@classmethod
|
1118
1118
|
def group_II_intron(cls):
|
1119
1119
|
"""Group II introns are found in rRNA, tRNA and mRNA of organelles in fungi, plants and protists, and also in mRNA in bacteria. They are large self-splicing ribozymes and have 6 structural domains (cls, usually designated dI to dVI). A subset of group II introns also encode essential splicing proteins in intronic ORFs. The length of these introns can therefore be up to 3kb. Splicing occurs in almost identical fashion to nuclear pre-mRNA splicing with two transesterification steps. The 2' hydroxyl of a bulged adenosine in domain VI attacks the 5' splice site, followed by nucleophilic attack on the 3' splice site by the 3' OH of the upstream exon. Protein machinery is required for splicing in vivo, and long range intron-intron and intron-exon interactions are important for splice site positioning. Group II introns are further sub-classified into groups IIA and IIB which differ in splice site consensus, distance of bulged A from 3' splice site, some tertiary interactions, and intronic ORF phylogeny. (http://www.sanger.ac.uk/Software/Rfam/browse/index.shtml)
|
1120
1120
|
(http://purl.obolibrary.org/obo/SO_0000603)
|
1121
1121
|
"""
|
1122
|
-
return
|
1122
|
+
return _namespace_SOFA('http://purl.obolibrary.org/obo/SO_0000603')
|
1123
1123
|
|
1124
1124
|
@classmethod
|
1125
1125
|
def intergenic_region(cls):
|
1126
1126
|
"""A region containing or overlapping no genes that is bounded on either side by a gene, or bounded by a gene and the end of the chromosome. (cls, SO:cjm)
|
1127
1127
|
(http://purl.obolibrary.org/obo/SO_0000605)
|
1128
1128
|
"""
|
1129
|
-
return
|
1129
|
+
return _namespace_SOFA('http://purl.obolibrary.org/obo/SO_0000605')
|
1130
1130
|
|
1131
1131
|
@classmethod
|
1132
1132
|
def polyA_sequence(cls):
|
1133
1133
|
"""Sequence of about 100 nucleotides of A added to the 3' end of most eukaryotic mRNAs. (cls, SO:ke)
|
1134
1134
|
(http://purl.obolibrary.org/obo/SO_0000610)
|
1135
1135
|
"""
|
1136
|
-
return
|
1136
|
+
return _namespace_SOFA('http://purl.obolibrary.org/obo/SO_0000610')
|
1137
1137
|
|
1138
1138
|
@classmethod
|
1139
1139
|
def branch_site(cls):
|
1140
1140
|
"""A pyrimidine rich sequence near the 3' end of an intron to which the 5'end becomes covalently bound during nuclear splicing. The resulting structure resembles a lariat. (cls, SO:ke)
|
1141
1141
|
(http://purl.obolibrary.org/obo/SO_0000611)
|
1142
1142
|
"""
|
1143
|
-
return
|
1143
|
+
return _namespace_SOFA('http://purl.obolibrary.org/obo/SO_0000611')
|
1144
1144
|
|
1145
1145
|
@classmethod
|
1146
1146
|
def polypyrimidine_tract(cls):
|
1147
1147
|
"""The polypyrimidine tract is one of the cis-acting sequence elements directing intron removal in pre-mRNA splicing. (cls, http://nar.oupjournals.org/cgi/content/full/25/4/888)
|
1148
1148
|
(http://purl.obolibrary.org/obo/SO_0000612)
|
1149
1149
|
"""
|
1150
|
-
return
|
1150
|
+
return _namespace_SOFA('http://purl.obolibrary.org/obo/SO_0000612')
|
1151
1151
|
|
1152
1152
|
@classmethod
|
1153
1153
|
def transcription_end_site(cls):
|
1154
1154
|
"""The base where transcription ends. (cls, SO:ke)
|
1155
1155
|
(http://purl.obolibrary.org/obo/SO_0000616)
|
1156
1156
|
"""
|
1157
|
-
return
|
1157
|
+
return _namespace_SOFA('http://purl.obolibrary.org/obo/SO_0000616')
|
1158
1158
|
|
1159
1159
|
@classmethod
|
1160
1160
|
def telomere(cls):
|
1161
1161
|
"""A specific structure at the end of a linear chromosome, required for the integrity and maintenance of the end. (cls, SO:ma)
|
1162
1162
|
(http://purl.obolibrary.org/obo/SO_0000624)
|
1163
1163
|
"""
|
1164
|
-
return
|
1164
|
+
return _namespace_SOFA('http://purl.obolibrary.org/obo/SO_0000624')
|
1165
1165
|
|
1166
1166
|
@classmethod
|
1167
1167
|
def silencer(cls):
|
1168
1168
|
"""A regulatory region which upon binding of transcription factors, suppress the transcription of the gene or genes they control. (cls, SO:ke)
|
1169
1169
|
(http://purl.obolibrary.org/obo/SO_0000625)
|
1170
1170
|
"""
|
1171
|
-
return
|
1171
|
+
return _namespace_SOFA('http://purl.obolibrary.org/obo/SO_0000625')
|
1172
1172
|
|
1173
1173
|
@classmethod
|
1174
1174
|
def insulator(cls):
|
1175
1175
|
"""A transcriptional cis regulatory region that when located between a CM and a gene's promoter prevents the CRM from modulating that genes expression. (cls, SO:regcreative)
|
1176
1176
|
(http://purl.obolibrary.org/obo/SO_0000627)
|
1177
1177
|
"""
|
1178
|
-
return
|
1178
|
+
return _namespace_SOFA('http://purl.obolibrary.org/obo/SO_0000627')
|
1179
1179
|
|
1180
1180
|
@classmethod
|
1181
1181
|
def chromosomal_structural_element(cls):
|
1182
|
-
return
|
1182
|
+
return _namespace_SOFA('http://purl.obolibrary.org/obo/SO_0000628')
|
1183
1183
|
|
1184
1184
|
@classmethod
|
1185
1185
|
def minisatellite(cls):
|
1186
1186
|
"""A repeat region containing tandemly repeated sequences having a unit length of 10 to 40 bp. (cls, http://www.informatics.jax.org/silver/glossary.shtml)
|
1187
1187
|
(http://purl.obolibrary.org/obo/SO_0000643)
|
1188
1188
|
"""
|
1189
|
-
return
|
1189
|
+
return _namespace_SOFA('http://purl.obolibrary.org/obo/SO_0000643')
|
1190
1190
|
|
1191
1191
|
@classmethod
|
1192
1192
|
def antisense_RNA(cls):
|
1193
1193
|
"""Antisense RNA is RNA that is transcribed from the coding, rather than the template, strand of DNA. It is therefore complementary to mRNA. (cls, SO:ke)
|
1194
1194
|
(http://purl.obolibrary.org/obo/SO_0000644)
|
1195
1195
|
"""
|
1196
|
-
return
|
1196
|
+
return _namespace_SOFA('http://purl.obolibrary.org/obo/SO_0000644')
|
1197
1197
|
|
1198
1198
|
@classmethod
|
1199
1199
|
def antisense_primary_transcript(cls):
|
1200
1200
|
"""The reverse complement of the primary transcript. (cls, SO:ke)
|
1201
1201
|
(http://purl.obolibrary.org/obo/SO_0000645)
|
1202
1202
|
"""
|
1203
|
-
return
|
1203
|
+
return _namespace_SOFA('http://purl.obolibrary.org/obo/SO_0000645')
|
1204
1204
|
|
1205
1205
|
@classmethod
|
1206
1206
|
def siRNA(cls):
|
1207
1207
|
"""A small RNA molecule that is the product of a longer exogenous or endogenous dsRNA, which is either a bimolecular duplex or very long hairpin, processed (cls, via the Dicer pathway) such that numerous siRNAs accumulate from both strands of the dsRNA. SRNAs trigger the cleavage of their target molecules. (PMID:12592000)
|
1208
1208
|
(http://purl.obolibrary.org/obo/SO_0000646)
|
1209
1209
|
"""
|
1210
|
-
return
|
1210
|
+
return _namespace_SOFA('http://purl.obolibrary.org/obo/SO_0000646')
|
1211
1211
|
|
1212
1212
|
@classmethod
|
1213
1213
|
def stRNA(cls):
|
1214
1214
|
"""Non-coding RNAs of about 21 nucleotides in length that regulate temporal development; first discovered in C. elegans. (cls, PMID:11081512)
|
1215
1215
|
(http://purl.obolibrary.org/obo/SO_0000649)
|
1216
1216
|
"""
|
1217
|
-
return
|
1217
|
+
return _namespace_SOFA('http://purl.obolibrary.org/obo/SO_0000649')
|
1218
1218
|
|
1219
1219
|
@classmethod
|
1220
1220
|
def small_subunit_rRNA(cls):
|
1221
1221
|
"""Ribosomal RNA transcript that structures the small subunit of the ribosome. (cls, SO:ke)
|
1222
1222
|
(http://purl.obolibrary.org/obo/SO_0000650)
|
1223
1223
|
"""
|
1224
|
-
return
|
1224
|
+
return _namespace_SOFA('http://purl.obolibrary.org/obo/SO_0000650')
|
1225
1225
|
|
1226
1226
|
@classmethod
|
1227
1227
|
def large_subunit_rRNA(cls):
|
1228
1228
|
"""Ribosomal RNA transcript that structures the large subunit of the ribosome. (cls, SO:ke)
|
1229
1229
|
(http://purl.obolibrary.org/obo/SO_0000651)
|
1230
1230
|
"""
|
1231
|
-
return
|
1231
|
+
return _namespace_SOFA('http://purl.obolibrary.org/obo/SO_0000651')
|
1232
1232
|
|
1233
1233
|
@classmethod
|
1234
1234
|
def rRNA_5S(cls):
|
1235
1235
|
"""5S ribosomal RNA (cls, 5S rRNA) is a component of the large ribosomal subunit in both prokaryotes and eukaryotes. In eukaryotes, it is synthesised by RNA polymerase III (the other eukaryotic rRNAs are cleaved from a 45S precursor synthesised by RNA polymerase I). In Xenopus oocytes, it has been shown that fingers 4-7 of the nine-zinc finger transcription factor TFIIIA can bind to the central region of 5S RNA. Thus, in addition to positively regulating 5S rRNA transcription, TFIIIA also stabilizes 5S rRNA until it is required for transcription. (http://www.sanger.ac.uk/cgi-bin/Rfam/getacc?RF00001)
|
1236
1236
|
(http://purl.obolibrary.org/obo/SO_0000652)
|
1237
1237
|
"""
|
1238
|
-
return
|
1238
|
+
return _namespace_SOFA('http://purl.obolibrary.org/obo/SO_0000652')
|
1239
1239
|
|
1240
1240
|
@classmethod
|
1241
1241
|
def rRNA_28S(cls):
|
1242
1242
|
"""A component of the large ribosomal subunit. (cls, SO:ke)
|
1243
1243
|
(http://purl.obolibrary.org/obo/SO_0000653)
|
1244
1244
|
"""
|
1245
|
-
return
|
1245
|
+
return _namespace_SOFA('http://purl.obolibrary.org/obo/SO_0000653')
|
1246
1246
|
|
1247
1247
|
@classmethod
|
1248
1248
|
def ncRNA(cls):
|
1249
1249
|
"""An RNA transcript that does not encode for a protein rather the RNA molecule is the gene product. (cls, SO:ke)
|
1250
1250
|
(http://purl.obolibrary.org/obo/SO_0000655)
|
1251
1251
|
"""
|
1252
|
-
return
|
1252
|
+
return _namespace_SOFA('http://purl.obolibrary.org/obo/SO_0000655')
|
1253
1253
|
|
1254
1254
|
@classmethod
|
1255
1255
|
def repeat_region(cls):
|
1256
1256
|
"""A region of sequence containing one or more repeat units. (cls, SO:ke)
|
1257
1257
|
(http://purl.obolibrary.org/obo/SO_0000657)
|
1258
1258
|
"""
|
1259
|
-
return
|
1259
|
+
return _namespace_SOFA('http://purl.obolibrary.org/obo/SO_0000657')
|
1260
1260
|
|
1261
1261
|
@classmethod
|
1262
1262
|
def dispersed_repeat(cls):
|
1263
1263
|
"""A repeat that is located at dispersed sites in the genome. (cls, SO:ke)
|
1264
1264
|
(http://purl.obolibrary.org/obo/SO_0000658)
|
1265
1265
|
"""
|
1266
|
-
return
|
1266
|
+
return _namespace_SOFA('http://purl.obolibrary.org/obo/SO_0000658')
|
1267
1267
|
|
1268
1268
|
@classmethod
|
1269
1269
|
def spliceosomal_intron(cls):
|
1270
1270
|
"""An intron which is spliced by the spliceosome. (cls, SO:ke)
|
1271
1271
|
(http://purl.obolibrary.org/obo/SO_0000662)
|
1272
1272
|
"""
|
1273
|
-
return
|
1273
|
+
return _namespace_SOFA('http://purl.obolibrary.org/obo/SO_0000662')
|
1274
1274
|
|
1275
1275
|
@classmethod
|
1276
1276
|
def insertion(cls):
|
1277
1277
|
"""The sequence of one or more nucleotides added between two adjacent nucleotides in the sequence. (cls, SO:ke)
|
1278
1278
|
(http://purl.obolibrary.org/obo/SO_0000667)
|
1279
1279
|
"""
|
1280
|
-
return
|
1280
|
+
return _namespace_SOFA('http://purl.obolibrary.org/obo/SO_0000667')
|
1281
1281
|
|
1282
1282
|
@classmethod
|
1283
1283
|
def EST_match(cls):
|
1284
1284
|
"""A match against an EST sequence. (cls, SO:ke)
|
1285
1285
|
(http://purl.obolibrary.org/obo/SO_0000668)
|
1286
1286
|
"""
|
1287
|
-
return
|
1287
|
+
return _namespace_SOFA('http://purl.obolibrary.org/obo/SO_0000668')
|
1288
1288
|
|
1289
1289
|
@classmethod
|
1290
1290
|
def transcript(cls):
|
1291
1291
|
"""An RNA synthesized on a DNA or RNA template by an RNA polymerase. (cls, SO:ma)
|
1292
1292
|
(http://purl.obolibrary.org/obo/SO_0000673)
|
1293
1293
|
"""
|
1294
|
-
return
|
1294
|
+
return _namespace_SOFA('http://purl.obolibrary.org/obo/SO_0000673')
|
1295
1295
|
|
1296
1296
|
@classmethod
|
1297
1297
|
def nuclease_sensitive_site(cls):
|
1298
1298
|
"""A region of nucleotide sequence targeted by a nuclease enzyme. (cls, SO:ma)
|
1299
1299
|
(http://purl.obolibrary.org/obo/SO_0000684)
|
1300
1300
|
"""
|
1301
|
-
return
|
1301
|
+
return _namespace_SOFA('http://purl.obolibrary.org/obo/SO_0000684')
|
1302
1302
|
|
1303
1303
|
@classmethod
|
1304
1304
|
def deletion_junction(cls):
|
1305
1305
|
"""The space between two bases in a sequence which marks the position where a deletion has occurred. (cls, SO:ke)
|
1306
1306
|
(http://purl.obolibrary.org/obo/SO_0000687)
|
1307
1307
|
"""
|
1308
|
-
return
|
1308
|
+
return _namespace_SOFA('http://purl.obolibrary.org/obo/SO_0000687')
|
1309
1309
|
|
1310
1310
|
@classmethod
|
1311
1311
|
def golden_path(cls):
|
1312
1312
|
"""A set of subregions selected from sequence contigs which when concatenated form a nonredundant linear sequence. (cls, SO:ls)
|
1313
1313
|
(http://purl.obolibrary.org/obo/SO_0000688)
|
1314
1314
|
"""
|
1315
|
-
return
|
1315
|
+
return _namespace_SOFA('http://purl.obolibrary.org/obo/SO_0000688')
|
1316
1316
|
|
1317
1317
|
@classmethod
|
1318
1318
|
def cDNA_match(cls):
|
1319
1319
|
"""A match against cDNA sequence. (cls, SO:ke)
|
1320
1320
|
(http://purl.obolibrary.org/obo/SO_0000689)
|
1321
1321
|
"""
|
1322
|
-
return
|
1322
|
+
return _namespace_SOFA('http://purl.obolibrary.org/obo/SO_0000689')
|
1323
1323
|
|
1324
1324
|
@classmethod
|
1325
1325
|
def SNP(cls):
|
1326
1326
|
"""SNPs are single base pair positions in genomic DNA at which different sequence alternatives exist in normal individuals in some population(cls, s), wherein the least frequent variant has an abundance of 1% or greater. (SO:cb)
|
1327
1327
|
(http://purl.obolibrary.org/obo/SO_0000694)
|
1328
1328
|
"""
|
1329
|
-
return
|
1329
|
+
return _namespace_SOFA('http://purl.obolibrary.org/obo/SO_0000694')
|
1330
1330
|
|
1331
1331
|
@classmethod
|
1332
1332
|
def reagent(cls):
|
1333
1333
|
"""A sequence used in experiment. (cls, SO:ke)
|
1334
1334
|
(http://purl.obolibrary.org/obo/SO_0000695)
|
1335
1335
|
"""
|
1336
|
-
return
|
1336
|
+
return _namespace_SOFA('http://purl.obolibrary.org/obo/SO_0000695')
|
1337
1337
|
|
1338
1338
|
@classmethod
|
1339
1339
|
def oligo(cls):
|
1340
1340
|
"""A short oligonucleotide sequence, of length on the order of 10's of bases; either single or double stranded. (cls, SO:ma)
|
1341
1341
|
(http://purl.obolibrary.org/obo/SO_0000696)
|
1342
1342
|
"""
|
1343
|
-
return
|
1343
|
+
return _namespace_SOFA('http://purl.obolibrary.org/obo/SO_0000696')
|
1344
1344
|
|
1345
1345
|
@classmethod
|
1346
1346
|
def junction(cls):
|
1347
1347
|
"""A sequence_feature with an extent of zero. (cls, SO:ke)
|
1348
1348
|
(http://purl.obolibrary.org/obo/SO_0000699)
|
1349
1349
|
"""
|
1350
|
-
return
|
1350
|
+
return _namespace_SOFA('http://purl.obolibrary.org/obo/SO_0000699')
|
1351
1351
|
|
1352
1352
|
@classmethod
|
1353
1353
|
def remark(cls):
|
1354
1354
|
"""A comment about the sequence. (cls, SO:ke)
|
1355
1355
|
(http://purl.obolibrary.org/obo/SO_0000700)
|
1356
1356
|
"""
|
1357
|
-
return
|
1357
|
+
return _namespace_SOFA('http://purl.obolibrary.org/obo/SO_0000700')
|
1358
1358
|
|
1359
1359
|
@classmethod
|
1360
1360
|
def possible_base_call_error(cls):
|
1361
1361
|
"""A region of sequence where the validity of the base calling is questionable. (cls, SO:ke)
|
1362
1362
|
(http://purl.obolibrary.org/obo/SO_0000701)
|
1363
1363
|
"""
|
1364
|
-
return
|
1364
|
+
return _namespace_SOFA('http://purl.obolibrary.org/obo/SO_0000701')
|
1365
1365
|
|
1366
1366
|
@classmethod
|
1367
1367
|
def possible_assembly_error(cls):
|
1368
1368
|
"""A region of sequence where there may have been an error in the assembly. (cls, SO:ke)
|
1369
1369
|
(http://purl.obolibrary.org/obo/SO_0000702)
|
1370
1370
|
"""
|
1371
|
-
return
|
1371
|
+
return _namespace_SOFA('http://purl.obolibrary.org/obo/SO_0000702')
|
1372
1372
|
|
1373
1373
|
@classmethod
|
1374
1374
|
def experimental_result_region(cls):
|
1375
1375
|
"""A region of sequence implicated in an experimental result. (cls, SO:ke)
|
1376
1376
|
(http://purl.obolibrary.org/obo/SO_0000703)
|
1377
1377
|
"""
|
1378
|
-
return
|
1378
|
+
return _namespace_SOFA('http://purl.obolibrary.org/obo/SO_0000703')
|
1379
1379
|
|
1380
1380
|
@classmethod
|
1381
1381
|
def gene(cls):
|
1382
1382
|
"""A region (cls, or regions) that includes all of the sequence elements necessary to encode a functional transcript. A gene may include regulatory regions, transcribed regions and/or other functional sequence regions. (SO:immuno_workshop)
|
1383
1383
|
(http://purl.obolibrary.org/obo/SO_0000704)
|
1384
1384
|
"""
|
1385
|
-
return
|
1385
|
+
return _namespace_SOFA('http://purl.obolibrary.org/obo/SO_0000704')
|
1386
1386
|
|
1387
1387
|
@classmethod
|
1388
1388
|
def tandem_repeat(cls):
|
1389
1389
|
"""Two or more adjcent copies of a region (cls, of length greater than 1). (SO:ke)
|
1390
1390
|
(http://purl.obolibrary.org/obo/SO_0000705)
|
1391
1391
|
"""
|
1392
|
-
return
|
1392
|
+
return _namespace_SOFA('http://purl.obolibrary.org/obo/SO_0000705')
|
1393
1393
|
|
1394
1394
|
@classmethod
|
1395
1395
|
def trans_splice_acceptor_site(cls):
|
1396
1396
|
"""The 3' splice site of the acceptor primary transcript. (cls, SO:ke)
|
1397
1397
|
(http://purl.obolibrary.org/obo/SO_0000706)
|
1398
1398
|
"""
|
1399
|
-
return
|
1399
|
+
return _namespace_SOFA('http://purl.obolibrary.org/obo/SO_0000706')
|
1400
1400
|
|
1401
1401
|
@classmethod
|
1402
1402
|
def nucleotide_motif(cls):
|
1403
1403
|
"""A region of nucleotide sequence corresponding to a known motif. (cls, SO:ke)
|
1404
1404
|
(http://purl.obolibrary.org/obo/SO_0000714)
|
1405
1405
|
"""
|
1406
|
-
return
|
1406
|
+
return _namespace_SOFA('http://purl.obolibrary.org/obo/SO_0000714')
|
1407
1407
|
|
1408
1408
|
@classmethod
|
1409
1409
|
def RNA_motif(cls):
|
1410
1410
|
"""A motif that is active in RNA sequence. (cls, SO:ke)
|
1411
1411
|
(http://purl.obolibrary.org/obo/SO_0000715)
|
1412
1412
|
"""
|
1413
|
-
return
|
1413
|
+
return _namespace_SOFA('http://purl.obolibrary.org/obo/SO_0000715')
|
1414
1414
|
|
1415
1415
|
@classmethod
|
1416
1416
|
def reading_frame(cls):
|
1417
1417
|
"""A nucleic acid sequence that when read as sequential triplets, has the potential of encoding a sequential string of amino acids. It need not contain the start or stop codon. (cls, SGD:rb)
|
1418
1418
|
(http://purl.obolibrary.org/obo/SO_0000717)
|
1419
1419
|
"""
|
1420
|
-
return
|
1420
|
+
return _namespace_SOFA('http://purl.obolibrary.org/obo/SO_0000717')
|
1421
1421
|
|
1422
1422
|
@classmethod
|
1423
1423
|
def ultracontig(cls):
|
1424
1424
|
"""An ordered and oriented set of scaffolds based on somewhat weaker sets of inferential evidence such as one set of mate pair reads together with supporting evidence from ESTs or location of markers from SNP or microsatellite maps, or cytogenetic localization of contained markers. (cls, FB:WG)
|
1425
1425
|
(http://purl.obolibrary.org/obo/SO_0000719)
|
1426
1426
|
"""
|
1427
|
-
return
|
1427
|
+
return _namespace_SOFA('http://purl.obolibrary.org/obo/SO_0000719')
|
1428
1428
|
|
1429
1429
|
@classmethod
|
1430
1430
|
def oriT(cls):
|
1431
1431
|
"""A region of a DNA molecule where transfer is initiated during the process of conjugation or mobilization. (cls, http://www.ebi.ac.uk/embl/Documentation/FT_definitions/feature_table.html)
|
1432
1432
|
(http://purl.obolibrary.org/obo/SO_0000724)
|
1433
1433
|
"""
|
1434
|
-
return
|
1434
|
+
return _namespace_SOFA('http://purl.obolibrary.org/obo/SO_0000724')
|
1435
1435
|
|
1436
1436
|
@classmethod
|
1437
1437
|
def transit_peptide(cls):
|
1438
1438
|
"""The transit_peptide is a short region at the N-terminus of the peptide that directs the protein to an organelle (cls, chloroplast, mitochondrion, microbody or cyanelle). (http://www.ebi.ac.uk/embl/Documentation/FT_definitions/feature_table.html)
|
1439
1439
|
(http://purl.obolibrary.org/obo/SO_0000725)
|
1440
1440
|
"""
|
1441
|
-
return
|
1441
|
+
return _namespace_SOFA('http://purl.obolibrary.org/obo/SO_0000725')
|
1442
1442
|
|
1443
1443
|
@classmethod
|
1444
1444
|
def CRM(cls):
|
1445
1445
|
"""A regulatory_region where more than 1 TF_binding_site together are regulatorily active. (cls, SO:SG)
|
1446
1446
|
(http://purl.obolibrary.org/obo/SO_0000727)
|
1447
1447
|
"""
|
1448
|
-
return
|
1448
|
+
return _namespace_SOFA('http://purl.obolibrary.org/obo/SO_0000727')
|
1449
1449
|
|
1450
1450
|
@classmethod
|
1451
1451
|
def gap(cls):
|
1452
1452
|
"""A gap in the sequence of known length. The unknown bases are filled in with N's. (cls, SO:ke)
|
1453
1453
|
(http://purl.obolibrary.org/obo/SO_0000730)
|
1454
1454
|
"""
|
1455
|
-
return
|
1455
|
+
return _namespace_SOFA('http://purl.obolibrary.org/obo/SO_0000730')
|
1456
1456
|
|
1457
1457
|
@classmethod
|
1458
1458
|
def gene_group_regulatory_region(cls):
|
1459
|
-
return
|
1459
|
+
return _namespace_SOFA('http://purl.obolibrary.org/obo/SO_0000752')
|
1460
1460
|
|
1461
1461
|
@classmethod
|
1462
1462
|
def clone_insert(cls):
|
1463
1463
|
"""The region of sequence that has been inserted and is being propagated by the clone. (cls, SO:ke)
|
1464
1464
|
(http://purl.obolibrary.org/obo/SO_0000753)
|
1465
1465
|
"""
|
1466
|
-
return
|
1466
|
+
return _namespace_SOFA('http://purl.obolibrary.org/obo/SO_0000753')
|
1467
1467
|
|
1468
1468
|
@classmethod
|
1469
1469
|
def pseudogenic_rRNA(cls):
|
1470
1470
|
"""A non functional descendent of an rRNA. (cls, SO:ke)
|
1471
1471
|
(http://purl.obolibrary.org/obo/SO_0000777)
|
1472
1472
|
"""
|
1473
|
-
return
|
1473
|
+
return _namespace_SOFA('http://purl.obolibrary.org/obo/SO_0000777')
|
1474
1474
|
|
1475
1475
|
@classmethod
|
1476
1476
|
def pseudogenic_tRNA(cls):
|
1477
1477
|
"""A non functional descendent of a tRNA. (cls, SO:ke)
|
1478
1478
|
(http://purl.obolibrary.org/obo/SO_0000778)
|
1479
1479
|
"""
|
1480
|
-
return
|
1480
|
+
return _namespace_SOFA('http://purl.obolibrary.org/obo/SO_0000778')
|
1481
1481
|
|
1482
1482
|
@classmethod
|
1483
1483
|
def chromosome_part(cls):
|
1484
1484
|
"""A region of a chromosome. (cls, SO:ke)
|
1485
1485
|
(http://purl.obolibrary.org/obo/SO_0000830)
|
1486
1486
|
"""
|
1487
|
-
return
|
1487
|
+
return _namespace_SOFA('http://purl.obolibrary.org/obo/SO_0000830')
|
1488
1488
|
|
1489
1489
|
@classmethod
|
1490
1490
|
def gene_member_region(cls):
|
1491
1491
|
"""A region of a gene. (cls, SO:ke)
|
1492
1492
|
(http://purl.obolibrary.org/obo/SO_0000831)
|
1493
1493
|
"""
|
1494
|
-
return
|
1494
|
+
return _namespace_SOFA('http://purl.obolibrary.org/obo/SO_0000831')
|
1495
1495
|
|
1496
1496
|
@classmethod
|
1497
1497
|
def transcript_region(cls):
|
1498
1498
|
"""A region of a transcript. (cls, SO:ke)
|
1499
1499
|
(http://purl.obolibrary.org/obo/SO_0000833)
|
1500
1500
|
"""
|
1501
|
-
return
|
1501
|
+
return _namespace_SOFA('http://purl.obolibrary.org/obo/SO_0000833')
|
1502
1502
|
|
1503
1503
|
@classmethod
|
1504
1504
|
def mature_transcript_region(cls):
|
1505
1505
|
"""A region of a mature transcript. (cls, SO:ke)
|
1506
1506
|
(http://purl.obolibrary.org/obo/SO_0000834)
|
1507
1507
|
"""
|
1508
|
-
return
|
1508
|
+
return _namespace_SOFA('http://purl.obolibrary.org/obo/SO_0000834')
|
1509
1509
|
|
1510
1510
|
@classmethod
|
1511
1511
|
def primary_transcript_region(cls):
|
1512
1512
|
"""A part of a primary transcript. (cls, SO:ke)
|
1513
1513
|
(http://purl.obolibrary.org/obo/SO_0000835)
|
1514
1514
|
"""
|
1515
|
-
return
|
1515
|
+
return _namespace_SOFA('http://purl.obolibrary.org/obo/SO_0000835')
|
1516
1516
|
|
1517
1517
|
@classmethod
|
1518
1518
|
def mRNA_region(cls):
|
1519
1519
|
"""A region of an mRNA. (cls, SO:cb)
|
1520
1520
|
(http://purl.obolibrary.org/obo/SO_0000836)
|
1521
1521
|
"""
|
1522
|
-
return
|
1522
|
+
return _namespace_SOFA('http://purl.obolibrary.org/obo/SO_0000836')
|
1523
1523
|
|
1524
1524
|
@classmethod
|
1525
1525
|
def UTR_region(cls):
|
1526
1526
|
"""A region of UTR. (cls, SO:ke)
|
1527
1527
|
(http://purl.obolibrary.org/obo/SO_0000837)
|
1528
1528
|
"""
|
1529
|
-
return
|
1529
|
+
return _namespace_SOFA('http://purl.obolibrary.org/obo/SO_0000837')
|
1530
1530
|
|
1531
1531
|
@classmethod
|
1532
1532
|
def polypeptide_region(cls):
|
1533
1533
|
"""Biological sequence region that can be assigned to a specific subsequence of a polypeptide. (cls, SO:GAR, SO:ke)
|
1534
1534
|
(http://purl.obolibrary.org/obo/SO_0000839)
|
1535
1535
|
"""
|
1536
|
-
return
|
1536
|
+
return _namespace_SOFA('http://purl.obolibrary.org/obo/SO_0000839')
|
1537
1537
|
|
1538
1538
|
@classmethod
|
1539
1539
|
def spliceosomal_intron_region(cls):
|
1540
1540
|
"""A region within an intron. (cls, SO:ke)
|
1541
1541
|
(http://purl.obolibrary.org/obo/SO_0000841)
|
1542
1542
|
"""
|
1543
|
-
return
|
1543
|
+
return _namespace_SOFA('http://purl.obolibrary.org/obo/SO_0000841')
|
1544
1544
|
|
1545
1545
|
@classmethod
|
1546
1546
|
def gene_component_region(cls):
|
1547
|
-
return
|
1547
|
+
return _namespace_SOFA('http://purl.obolibrary.org/obo/SO_0000842')
|
1548
1548
|
|
1549
1549
|
@classmethod
|
1550
1550
|
def CDS_region(cls):
|
1551
1551
|
"""A region of a CDS. (cls, SO:cb)
|
1552
1552
|
(http://purl.obolibrary.org/obo/SO_0000851)
|
1553
1553
|
"""
|
1554
|
-
return
|
1554
|
+
return _namespace_SOFA('http://purl.obolibrary.org/obo/SO_0000851')
|
1555
1555
|
|
1556
1556
|
@classmethod
|
1557
1557
|
def exon_region(cls):
|
1558
1558
|
"""A region of an exon. (cls, RSC:cb)
|
1559
1559
|
(http://purl.obolibrary.org/obo/SO_0000852)
|
1560
1560
|
"""
|
1561
|
-
return
|
1561
|
+
return _namespace_SOFA('http://purl.obolibrary.org/obo/SO_0000852')
|
1562
1562
|
|
1563
1563
|
@classmethod
|
1564
1564
|
def rRNA_16S(cls):
|
1565
1565
|
"""A large polynucleotide in Bacteria and Archaea, which functions as the small subunit of the ribosome. (cls, SO:ke)
|
1566
1566
|
(http://purl.obolibrary.org/obo/SO_0001000)
|
1567
1567
|
"""
|
1568
|
-
return
|
1568
|
+
return _namespace_SOFA('http://purl.obolibrary.org/obo/SO_0001000')
|
1569
1569
|
|
1570
1570
|
@classmethod
|
1571
1571
|
def rRNA_23S(cls):
|
1572
1572
|
"""A large polynucleotide in Bacteria and Archaea, which functions as the large subunit of the ribosome. (cls, SO:ke)
|
1573
1573
|
(http://purl.obolibrary.org/obo/SO_0001001)
|
1574
1574
|
"""
|
1575
|
-
return
|
1575
|
+
return _namespace_SOFA('http://purl.obolibrary.org/obo/SO_0001001')
|
1576
1576
|
|
1577
1577
|
@classmethod
|
1578
1578
|
def rRNA_25S(cls):
|
1579
1579
|
"""A large polynucleotide which functions as part of the large subunit of the ribosome in some eukaryotes. (cls, RSC:cb)
|
1580
1580
|
(http://purl.obolibrary.org/obo/SO_0001002)
|
1581
1581
|
"""
|
1582
|
-
return
|
1582
|
+
return _namespace_SOFA('http://purl.obolibrary.org/obo/SO_0001002')
|
1583
1583
|
|
1584
1584
|
@classmethod
|
1585
1585
|
def copy_number_variation(cls):
|
1586
1586
|
"""A variation that increases or decreases the copy number of a given region. (cls, SO:ke)
|
1587
1587
|
(http://purl.obolibrary.org/obo/SO_0001019)
|
1588
1588
|
"""
|
1589
|
-
return
|
1589
|
+
return _namespace_SOFA('http://purl.obolibrary.org/obo/SO_0001019')
|
1590
1590
|
|
1591
1591
|
@classmethod
|
1592
1592
|
def mobile_genetic_element(cls):
|
1593
1593
|
"""A nucleotide region with either intra-genome or intracellular moblity, of varying length, which often carry the information necessary for transfer and recombination with the host genome. (cls, PMID:14681355)
|
1594
1594
|
(http://purl.obolibrary.org/obo/SO_0001037)
|
1595
1595
|
"""
|
1596
|
-
return
|
1596
|
+
return _namespace_SOFA('http://purl.obolibrary.org/obo/SO_0001037')
|
1597
1597
|
|
1598
1598
|
@classmethod
|
1599
1599
|
def integrated_mobile_genetic_element(cls):
|
1600
1600
|
"""An MGE that is integrated into the host chromosome. (cls, SO:ke)
|
1601
1601
|
(http://purl.obolibrary.org/obo/SO_0001039)
|
1602
1602
|
"""
|
1603
|
-
return
|
1603
|
+
return _namespace_SOFA('http://purl.obolibrary.org/obo/SO_0001039')
|
1604
1604
|
|
1605
1605
|
@classmethod
|
1606
1606
|
def transcriptional_cis_regulatory_region(cls):
|
1607
1607
|
"""A regulatory_region that modulates the transcription of a gene or genes. (cls, SO:regcreative)
|
1608
1608
|
(http://purl.obolibrary.org/obo/SO_0001055)
|
1609
1609
|
"""
|
1610
|
-
return
|
1610
|
+
return _namespace_SOFA('http://purl.obolibrary.org/obo/SO_0001055')
|
1611
1611
|
|
1612
1612
|
@classmethod
|
1613
1613
|
def splicing_regulatory_region(cls):
|
1614
1614
|
"""A regulatory_region that modulates splicing. (cls, SO:ke)
|
1615
1615
|
(http://purl.obolibrary.org/obo/SO_0001056)
|
1616
1616
|
"""
|
1617
|
-
return
|
1617
|
+
return _namespace_SOFA('http://purl.obolibrary.org/obo/SO_0001056')
|
1618
1618
|
|
1619
1619
|
@classmethod
|
1620
1620
|
def sequence_alteration(cls):
|
1621
1621
|
"""A sequence_alteration is a sequence_feature whose extent is the deviation from another sequence. (cls, SO:ke)
|
1622
1622
|
(http://purl.obolibrary.org/obo/SO_0001059)
|
1623
1623
|
"""
|
1624
|
-
return
|
1624
|
+
return _namespace_SOFA('http://purl.obolibrary.org/obo/SO_0001059')
|
1625
1625
|
|
1626
1626
|
@classmethod
|
1627
1627
|
def immature_peptide_region(cls):
|
1628
1628
|
"""An immature_peptide_region is the extent of the peptide after it has been translated and before any processing occurs. (cls, EBIBS:GAR)
|
1629
1629
|
(http://purl.obolibrary.org/obo/SO_0001063)
|
1630
1630
|
"""
|
1631
|
-
return
|
1631
|
+
return _namespace_SOFA('http://purl.obolibrary.org/obo/SO_0001063')
|
1632
1632
|
|
1633
1633
|
@classmethod
|
1634
1634
|
def noncoding_region_of_exon(cls):
|
1635
1635
|
"""The maximal intersection of exon and UTR. (cls, SO:ke)
|
1636
1636
|
(http://purl.obolibrary.org/obo/SO_0001214)
|
1637
1637
|
"""
|
1638
|
-
return
|
1638
|
+
return _namespace_SOFA('http://purl.obolibrary.org/obo/SO_0001214')
|
1639
1639
|
|
1640
1640
|
@classmethod
|
1641
1641
|
def coding_region_of_exon(cls):
|
1642
1642
|
"""The region of an exon that encodes for protein sequence. (cls, SO:ke)
|
1643
1643
|
(http://purl.obolibrary.org/obo/SO_0001215)
|
1644
1644
|
"""
|
1645
|
-
return
|
1645
|
+
return _namespace_SOFA('http://purl.obolibrary.org/obo/SO_0001215')
|
1646
1646
|
|
1647
1647
|
@classmethod
|
1648
1648
|
def replicon(cls):
|
1649
1649
|
"""A region containing at least one unique origin of replication and a unique termination site. (cls, ISBN:0716719207)
|
1650
1650
|
(http://purl.obolibrary.org/obo/SO_0001235)
|
1651
1651
|
"""
|
1652
|
-
return
|
1652
|
+
return _namespace_SOFA('http://purl.obolibrary.org/obo/SO_0001235')
|
1653
1653
|
|
1654
1654
|
@classmethod
|
1655
1655
|
def base(cls):
|
1656
1656
|
"""A base is a sequence feature that corresponds to a single unit of a nucleotide polymer. (cls, SO:ke)
|
1657
1657
|
(http://purl.obolibrary.org/obo/SO_0001236)
|
1658
1658
|
"""
|
1659
|
-
return
|
1659
|
+
return _namespace_SOFA('http://purl.obolibrary.org/obo/SO_0001236')
|
1660
1660
|
|
1661
1661
|
@classmethod
|
1662
1662
|
def assembly(cls):
|
1663
1663
|
"""A region of the genome of known length that is composed by ordering and aligning two or more different regions. (cls, SO:ke)
|
1664
1664
|
(http://purl.obolibrary.org/obo/SO_0001248)
|
1665
1665
|
"""
|
1666
|
-
return
|
1666
|
+
return _namespace_SOFA('http://purl.obolibrary.org/obo/SO_0001248')
|
1667
1667
|
|
1668
1668
|
@classmethod
|
1669
1669
|
def biomaterial_region(cls):
|
1670
1670
|
"""A region which is intended for use in an experiment. (cls, SO:cb)
|
1671
1671
|
(http://purl.obolibrary.org/obo/SO_0001409)
|
1672
1672
|
"""
|
1673
|
-
return
|
1673
|
+
return _namespace_SOFA('http://purl.obolibrary.org/obo/SO_0001409')
|
1674
1674
|
|
1675
1675
|
@classmethod
|
1676
1676
|
def experimental_feature(cls):
|
1677
1677
|
"""A region which is the result of some arbitrary experimental procedure. The procedure may be carried out with biological material or inside a computer. (cls, SO:cb)
|
1678
1678
|
(http://purl.obolibrary.org/obo/SO_0001410)
|
1679
1679
|
"""
|
1680
|
-
return
|
1680
|
+
return _namespace_SOFA('http://purl.obolibrary.org/obo/SO_0001410')
|
1681
1681
|
|
1682
1682
|
@classmethod
|
1683
1683
|
def biological_region(cls):
|
1684
1684
|
"""A region defined by its disposition to be involved in a biological process. (cls, SO:cb)
|
1685
1685
|
(http://purl.obolibrary.org/obo/SO_0001411)
|
1686
1686
|
"""
|
1687
|
-
return
|
1687
|
+
return _namespace_SOFA('http://purl.obolibrary.org/obo/SO_0001411')
|
1688
1688
|
|
1689
1689
|
@classmethod
|
1690
1690
|
def topologically_defined_region(cls):
|
1691
1691
|
"""A region that is defined according to its relations with other regions within the same sequence. (cls, SO:cb)
|
1692
1692
|
(http://purl.obolibrary.org/obo/SO_0001412)
|
1693
1693
|
"""
|
1694
|
-
return
|
1694
|
+
return _namespace_SOFA('http://purl.obolibrary.org/obo/SO_0001412')
|
1695
1695
|
|
1696
1696
|
@classmethod
|
1697
1697
|
def cis_splice_site(cls):
|
1698
1698
|
"""Intronic 2 bp region bordering exon. A splice_site that adjacent_to exon and overlaps intron. (cls, SO:cjm, SO:ke)
|
1699
1699
|
(http://purl.obolibrary.org/obo/SO_0001419)
|
1700
1700
|
"""
|
1701
|
-
return
|
1701
|
+
return _namespace_SOFA('http://purl.obolibrary.org/obo/SO_0001419')
|
1702
1702
|
|
1703
1703
|
@classmethod
|
1704
1704
|
def trans_splice_site(cls):
|
1705
1705
|
"""Primary transcript region bordering trans-splice junction. (cls, SO:ke)
|
1706
1706
|
(http://purl.obolibrary.org/obo/SO_0001420)
|
1707
1707
|
"""
|
1708
|
-
return
|
1708
|
+
return _namespace_SOFA('http://purl.obolibrary.org/obo/SO_0001420')
|
1709
1709
|
|
1710
1710
|
@classmethod
|
1711
1711
|
def SNV(cls):
|
1712
1712
|
"""SNVs are single nucleotide positions in genomic DNA at which different sequence alternatives exist. (cls, SO:bm)
|
1713
1713
|
(http://purl.obolibrary.org/obo/SO_0001483)
|
1714
1714
|
"""
|
1715
|
-
return
|
1715
|
+
return _namespace_SOFA('http://purl.obolibrary.org/obo/SO_0001483')
|
1716
1716
|
|
1717
1717
|
@classmethod
|
1718
1718
|
def peptide_localization_signal(cls):
|
1719
1719
|
"""A region of peptide sequence used to target the polypeptide molecule to a specific organelle. (cls, SO:ke)
|
1720
1720
|
(http://purl.obolibrary.org/obo/SO_0001527)
|
1721
1721
|
"""
|
1722
|
-
return
|
1722
|
+
return _namespace_SOFA('http://purl.obolibrary.org/obo/SO_0001527')
|
1723
1723
|
|
1724
1724
|
@classmethod
|
1725
1725
|
def kozak_sequence(cls):
|
1726
1726
|
"""A kind of ribosome entry site, specific to Eukaryotic organisms that overlaps part of both 5' UTR and CDS sequence. (cls, SO:ke)
|
1727
1727
|
(http://purl.obolibrary.org/obo/SO_0001647)
|
1728
1728
|
"""
|
1729
|
-
return
|
1729
|
+
return _namespace_SOFA('http://purl.obolibrary.org/obo/SO_0001647')
|
1730
1730
|
|
1731
1731
|
@classmethod
|
1732
1732
|
def nucleotide_to_protein_binding_site(cls):
|
1733
1733
|
"""A binding site that, in the nucleotide molecule, interacts selectively and non-covalently with polypeptide residues. (cls, SO:ke)
|
1734
1734
|
(http://purl.obolibrary.org/obo/SO_0001654)
|
1735
1735
|
"""
|
1736
|
-
return
|
1736
|
+
return _namespace_SOFA('http://purl.obolibrary.org/obo/SO_0001654')
|
1737
1737
|
|
1738
1738
|
@classmethod
|
1739
1739
|
def transcription_regulatory_region(cls):
|
1740
1740
|
"""A regulatory region that is involved in the control of the process of transcription. (cls, SO:ke)
|
1741
1741
|
(http://purl.obolibrary.org/obo/SO_0001679)
|
1742
1742
|
"""
|
1743
|
-
return
|
1743
|
+
return _namespace_SOFA('http://purl.obolibrary.org/obo/SO_0001679')
|
1744
1744
|
|
1745
1745
|
@classmethod
|
1746
1746
|
def sequence_motif(cls):
|
1747
1747
|
"""A sequence motif is a nucleotide or amino-acid sequence pattern that may have biological significance. (cls, http://en.wikipedia.org/wiki/Sequence_motif)
|
1748
1748
|
(http://purl.obolibrary.org/obo/SO_0001683)
|
1749
1749
|
"""
|
1750
|
-
return
|
1750
|
+
return _namespace_SOFA('http://purl.obolibrary.org/obo/SO_0001683')
|
1751
1751
|
|
1752
1752
|
@classmethod
|
1753
1753
|
def epigenetically_modified_region(cls):
|
1754
1754
|
"""A biological region implicated in inherited changes caused by mechanisms other than changes in the underlying DNA sequence. (cls, http://en.wikipedia.org/wiki/Epigenetics, SO:ke)
|
1755
1755
|
(http://purl.obolibrary.org/obo/SO_0001720)
|
1756
1756
|
"""
|
1757
|
-
return
|
1757
|
+
return _namespace_SOFA('http://purl.obolibrary.org/obo/SO_0001720')
|
1758
1758
|
|
1759
1759
|
@classmethod
|
1760
1760
|
def paired_end_fragment(cls):
|
1761
1761
|
"""An assembly region that has been sequenced from both ends resulting in a read_pair (cls, mate_pair). (SO:ke)
|
1762
1762
|
(http://purl.obolibrary.org/obo/SO_0001790)
|
1763
1763
|
"""
|
1764
|
-
return
|
1764
|
+
return _namespace_SOFA('http://purl.obolibrary.org/obo/SO_0001790')
|
1765
1765
|
|
1766
1766
|
@classmethod
|
1767
1767
|
def regulatory_region(cls):
|
1768
1768
|
"""A region of sequence that is involved in the control of a biological process. (cls, SO:ke)
|
1769
1769
|
(http://purl.obolibrary.org/obo/SO_0005836)
|
1770
1770
|
"""
|
1771
|
-
return
|
1771
|
+
return _namespace_SOFA('http://purl.obolibrary.org/obo/SO_0005836')
|
1772
1772
|
|
1773
1773
|
@classmethod
|
1774
1774
|
def gene_group(cls):
|
1775
1775
|
"""A collection of related genes. (cls, SO:ma)
|
1776
1776
|
(http://purl.obolibrary.org/obo/SO_0005855)
|
1777
1777
|
"""
|
1778
|
-
return
|
1778
|
+
return _namespace_SOFA('http://purl.obolibrary.org/obo/SO_0005855')
|
1779
1779
|
|
1780
1780
|
@classmethod
|
1781
1781
|
def cleaved_peptide_region(cls):
|
1782
1782
|
"""The cleaved_peptide_regon is the a region of peptide sequence that is cleaved during maturation. (cls, EBIBS:GAR)
|
1783
1783
|
(http://purl.obolibrary.org/obo/SO_0100011)
|
1784
1784
|
"""
|
1785
|
-
return
|
1785
|
+
return _namespace_SOFA('http://purl.obolibrary.org/obo/SO_0100011')
|
1786
1786
|
|
1787
1787
|
@classmethod
|
1788
1788
|
def substitution(cls):
|
1789
1789
|
"""A sequence alteration where the length of the change in the variant is the same as that of the reference. (cls, SO:ke)
|
1790
1790
|
(http://purl.obolibrary.org/obo/SO_1000002)
|
1791
1791
|
"""
|
1792
|
-
return
|
1792
|
+
return _namespace_SOFA('http://purl.obolibrary.org/obo/SO_1000002')
|
1793
1793
|
|
1794
1794
|
@classmethod
|
1795
1795
|
def complex_substitution(cls):
|
1796
1796
|
"""When no simple or well defined DNA mutation event describes the observed DNA change, the keyword \"complex\" should be used. Usually there are multiple equally plausible explanations for the change. (cls, EBI:www.ebi.ac.uk/mutations/recommendations/mutevent.html)
|
1797
1797
|
(http://purl.obolibrary.org/obo/SO_1000005)
|
1798
1798
|
"""
|
1799
|
-
return
|
1799
|
+
return _namespace_SOFA('http://purl.obolibrary.org/obo/SO_1000005')
|
1800
1800
|
|
1801
1801
|
@classmethod
|
1802
1802
|
def point_mutation(cls):
|
1803
1803
|
"""A single nucleotide change which has occurred at the same position of a corresponding nucleotide in a reference sequence. (cls, SO:immuno_workshop)
|
1804
1804
|
(http://purl.obolibrary.org/obo/SO_1000008)
|
1805
1805
|
"""
|
1806
|
-
return
|
1806
|
+
return _namespace_SOFA('http://purl.obolibrary.org/obo/SO_1000008')
|
1807
1807
|
|
1808
1808
|
@classmethod
|
1809
1809
|
def inversion(cls):
|
1810
1810
|
"""A continuous nucleotide sequence is inverted in the same position. (cls, EBI:www.ebi.ac.uk/mutations/recommendations/mutevent.html)
|
1811
1811
|
(http://purl.obolibrary.org/obo/SO_1000036)
|
1812
1812
|
"""
|
1813
|
-
return
|
1813
|
+
return _namespace_SOFA('http://purl.obolibrary.org/obo/SO_1000036')
|
1814
1814
|
|
1815
1815
|
@classmethod
|
1816
1816
|
def regulon(cls):
|
1817
1817
|
"""A group of genes, whether linked as a cluster or not, that respond to a common regulatory signal. (cls, ISBN:0198506732)
|
1818
1818
|
(http://purl.obolibrary.org/obo/SO_1001284)
|
1819
1819
|
"""
|
1820
|
-
return
|
1820
|
+
return _namespace_SOFA('http://purl.obolibrary.org/obo/SO_1001284')
|
1821
1821
|
|
1822
1822
|
@classmethod
|
1823
1823
|
def databank_entry(cls):
|
1824
1824
|
"""The sequence referred to by an entry in a databank such as Genbank or SwissProt. (cls, SO:ke)
|
1825
1825
|
(http://purl.obolibrary.org/obo/SO_2000061)
|
1826
1826
|
"""
|
1827
|
-
return
|
1827
|
+
return _namespace_SOFA('http://purl.obolibrary.org/obo/SO_2000061')
|
1828
1828
|
|
1829
1829
|
@classmethod
|
1830
1830
|
def is_object_property(cls, uri):
|
@@ -1832,39 +1832,39 @@ class SOFO:
|
|
1832
1832
|
|
1833
1833
|
uri -- URI that is tested for being an object property
|
1834
1834
|
"""
|
1835
|
-
if uri ==
|
1835
|
+
if uri == _namespace_SOFA(''):
|
1836
1836
|
return True
|
1837
|
-
if uri ==
|
1837
|
+
if uri == _namespace_SOFA('http://purl.obolibrary.org/obo/http_//purl.org/obo/owl:complete_evidence_for_feature'):
|
1838
1838
|
return True
|
1839
|
-
if uri ==
|
1839
|
+
if uri == _namespace_SOFA('http://purl.obolibrary.org/obo/http_//purl.org/obo/owl:contained_by'):
|
1840
1840
|
return True
|
1841
|
-
if uri ==
|
1841
|
+
if uri == _namespace_SOFA('http://purl.obolibrary.org/obo/http_//purl.org/obo/owl:contains'):
|
1842
1842
|
return True
|
1843
|
-
if uri ==
|
1843
|
+
if uri == _namespace_SOFA('http://purl.obolibrary.org/obo/http_//purl.org/obo/owl:derives_from'):
|
1844
1844
|
return True
|
1845
|
-
if uri ==
|
1845
|
+
if uri == _namespace_SOFA('http://purl.obolibrary.org/obo/http_//purl.org/obo/owl:evidence_for_feature'):
|
1846
1846
|
return True
|
1847
|
-
if uri ==
|
1847
|
+
if uri == _namespace_SOFA('http://purl.obolibrary.org/obo/http_//purl.org/obo/owl:has_integral_part'):
|
1848
1848
|
return True
|
1849
|
-
if uri ==
|
1849
|
+
if uri == _namespace_SOFA('http://purl.obolibrary.org/obo/http_//purl.org/obo/owl:has_part'):
|
1850
1850
|
return True
|
1851
|
-
if uri ==
|
1851
|
+
if uri == _namespace_SOFA('http://purl.obolibrary.org/obo/http_//purl.org/obo/owl:homologous_to'):
|
1852
1852
|
return True
|
1853
|
-
if uri ==
|
1853
|
+
if uri == _namespace_SOFA('http://purl.obolibrary.org/obo/http_//purl.org/obo/owl:integral_part_of'):
|
1854
1854
|
return True
|
1855
|
-
if uri ==
|
1855
|
+
if uri == _namespace_SOFA('http://purl.obolibrary.org/obo/http_//purl.org/obo/owl:member_of'):
|
1856
1856
|
return True
|
1857
|
-
if uri ==
|
1857
|
+
if uri == _namespace_SOFA('http://purl.obolibrary.org/obo/http_//purl.org/obo/owl:non_functional_homolog_of'):
|
1858
1858
|
return True
|
1859
|
-
if uri ==
|
1859
|
+
if uri == _namespace_SOFA('http://purl.obolibrary.org/obo/http_//purl.org/obo/owl:orthologous_to'):
|
1860
1860
|
return True
|
1861
|
-
if uri ==
|
1861
|
+
if uri == _namespace_SOFA('http://purl.obolibrary.org/obo/http_//purl.org/obo/owl:paralogous_to'):
|
1862
1862
|
return True
|
1863
|
-
if uri ==
|
1863
|
+
if uri == _namespace_SOFA('http://purl.obolibrary.org/obo/http_//purl.org/obo/owl:part_of'):
|
1864
1864
|
return True
|
1865
|
-
if uri ==
|
1865
|
+
if uri == _namespace_SOFA('http://purl.obolibrary.org/obo/http_//purl.org/obo/owl:partial_evidence_for_feature'):
|
1866
1866
|
return True
|
1867
|
-
if uri ==
|
1867
|
+
if uri == _namespace_SOFA('http://purl.obolibrary.org/obo/http_//purl.org/obo/owl:similar_to'):
|
1868
1868
|
return True
|
1869
1869
|
return False
|
1870
1870
|
|
@@ -1882,509 +1882,509 @@ class SOFO:
|
|
1882
1882
|
|
1883
1883
|
uri -- URI that is tested for being a class
|
1884
1884
|
"""
|
1885
|
-
if uri ==
|
1885
|
+
if uri == _namespace_SOFA('http://purl.obolibrary.org/obo/SO_0000000'):
|
1886
1886
|
return True
|
1887
|
-
if uri ==
|
1887
|
+
if uri == _namespace_SOFA('http://purl.obolibrary.org/obo/SO_0000001'):
|
1888
1888
|
return True
|
1889
|
-
if uri ==
|
1889
|
+
if uri == _namespace_SOFA('http://purl.obolibrary.org/obo/SO_0000004'):
|
1890
1890
|
return True
|
1891
|
-
if uri ==
|
1891
|
+
if uri == _namespace_SOFA('http://purl.obolibrary.org/obo/SO_0000005'):
|
1892
1892
|
return True
|
1893
|
-
if uri ==
|
1893
|
+
if uri == _namespace_SOFA('http://purl.obolibrary.org/obo/SO_0000006'):
|
1894
1894
|
return True
|
1895
|
-
if uri ==
|
1895
|
+
if uri == _namespace_SOFA('http://purl.obolibrary.org/obo/SO_0000007'):
|
1896
1896
|
return True
|
1897
|
-
if uri ==
|
1897
|
+
if uri == _namespace_SOFA('http://purl.obolibrary.org/obo/SO_0000013'):
|
1898
1898
|
return True
|
1899
|
-
if uri ==
|
1899
|
+
if uri == _namespace_SOFA('http://purl.obolibrary.org/obo/SO_0000038'):
|
1900
1900
|
return True
|
1901
|
-
if uri ==
|
1901
|
+
if uri == _namespace_SOFA('http://purl.obolibrary.org/obo/SO_0000039'):
|
1902
1902
|
return True
|
1903
|
-
if uri ==
|
1903
|
+
if uri == _namespace_SOFA('http://purl.obolibrary.org/obo/SO_0000050'):
|
1904
1904
|
return True
|
1905
|
-
if uri ==
|
1905
|
+
if uri == _namespace_SOFA('http://purl.obolibrary.org/obo/SO_0000057'):
|
1906
1906
|
return True
|
1907
|
-
if uri ==
|
1907
|
+
if uri == _namespace_SOFA('http://purl.obolibrary.org/obo/SO_0000059'):
|
1908
1908
|
return True
|
1909
|
-
if uri ==
|
1909
|
+
if uri == _namespace_SOFA('http://purl.obolibrary.org/obo/SO_0000101'):
|
1910
1910
|
return True
|
1911
|
-
if uri ==
|
1911
|
+
if uri == _namespace_SOFA('http://purl.obolibrary.org/obo/SO_0000102'):
|
1912
1912
|
return True
|
1913
|
-
if uri ==
|
1913
|
+
if uri == _namespace_SOFA('http://purl.obolibrary.org/obo/SO_0000103'):
|
1914
1914
|
return True
|
1915
|
-
if uri ==
|
1915
|
+
if uri == _namespace_SOFA('http://purl.obolibrary.org/obo/SO_0000104'):
|
1916
1916
|
return True
|
1917
|
-
if uri ==
|
1917
|
+
if uri == _namespace_SOFA('http://purl.obolibrary.org/obo/SO_0000109'):
|
1918
1918
|
return True
|
1919
|
-
if uri ==
|
1919
|
+
if uri == _namespace_SOFA('http://purl.obolibrary.org/obo/SO_0000110'):
|
1920
1920
|
return True
|
1921
|
-
if uri ==
|
1921
|
+
if uri == _namespace_SOFA('http://purl.obolibrary.org/obo/SO_0000112'):
|
1922
1922
|
return True
|
1923
|
-
if uri ==
|
1923
|
+
if uri == _namespace_SOFA('http://purl.obolibrary.org/obo/SO_0000113'):
|
1924
1924
|
return True
|
1925
|
-
if uri ==
|
1925
|
+
if uri == _namespace_SOFA('http://purl.obolibrary.org/obo/SO_0000114'):
|
1926
1926
|
return True
|
1927
|
-
if uri ==
|
1927
|
+
if uri == _namespace_SOFA('http://purl.obolibrary.org/obo/SO_0000120'):
|
1928
1928
|
return True
|
1929
|
-
if uri ==
|
1929
|
+
if uri == _namespace_SOFA('http://purl.obolibrary.org/obo/SO_0000139'):
|
1930
1930
|
return True
|
1931
|
-
if uri ==
|
1931
|
+
if uri == _namespace_SOFA('http://purl.obolibrary.org/obo/SO_0000140'):
|
1932
1932
|
return True
|
1933
|
-
if uri ==
|
1933
|
+
if uri == _namespace_SOFA('http://purl.obolibrary.org/obo/SO_0000141'):
|
1934
1934
|
return True
|
1935
|
-
if uri ==
|
1935
|
+
if uri == _namespace_SOFA('http://purl.obolibrary.org/obo/SO_0000143'):
|
1936
1936
|
return True
|
1937
|
-
if uri ==
|
1937
|
+
if uri == _namespace_SOFA('http://purl.obolibrary.org/obo/SO_0000147'):
|
1938
1938
|
return True
|
1939
|
-
if uri ==
|
1939
|
+
if uri == _namespace_SOFA('http://purl.obolibrary.org/obo/SO_0000148'):
|
1940
1940
|
return True
|
1941
|
-
if uri ==
|
1941
|
+
if uri == _namespace_SOFA('http://purl.obolibrary.org/obo/SO_0000149'):
|
1942
1942
|
return True
|
1943
|
-
if uri ==
|
1943
|
+
if uri == _namespace_SOFA('http://purl.obolibrary.org/obo/SO_0000150'):
|
1944
1944
|
return True
|
1945
|
-
if uri ==
|
1945
|
+
if uri == _namespace_SOFA('http://purl.obolibrary.org/obo/SO_0000151'):
|
1946
1946
|
return True
|
1947
|
-
if uri ==
|
1947
|
+
if uri == _namespace_SOFA('http://purl.obolibrary.org/obo/SO_0000159'):
|
1948
1948
|
return True
|
1949
|
-
if uri ==
|
1949
|
+
if uri == _namespace_SOFA('http://purl.obolibrary.org/obo/SO_0000161'):
|
1950
1950
|
return True
|
1951
|
-
if uri ==
|
1951
|
+
if uri == _namespace_SOFA('http://purl.obolibrary.org/obo/SO_0000162'):
|
1952
1952
|
return True
|
1953
|
-
if uri ==
|
1953
|
+
if uri == _namespace_SOFA('http://purl.obolibrary.org/obo/SO_0000163'):
|
1954
1954
|
return True
|
1955
|
-
if uri ==
|
1955
|
+
if uri == _namespace_SOFA('http://purl.obolibrary.org/obo/SO_0000164'):
|
1956
1956
|
return True
|
1957
|
-
if uri ==
|
1957
|
+
if uri == _namespace_SOFA('http://purl.obolibrary.org/obo/SO_0000165'):
|
1958
1958
|
return True
|
1959
|
-
if uri ==
|
1959
|
+
if uri == _namespace_SOFA('http://purl.obolibrary.org/obo/SO_0000167'):
|
1960
1960
|
return True
|
1961
|
-
if uri ==
|
1961
|
+
if uri == _namespace_SOFA('http://purl.obolibrary.org/obo/SO_0000177'):
|
1962
1962
|
return True
|
1963
|
-
if uri ==
|
1963
|
+
if uri == _namespace_SOFA('http://purl.obolibrary.org/obo/SO_0000178'):
|
1964
1964
|
return True
|
1965
|
-
if uri ==
|
1965
|
+
if uri == _namespace_SOFA('http://purl.obolibrary.org/obo/SO_0000179'):
|
1966
1966
|
return True
|
1967
|
-
if uri ==
|
1967
|
+
if uri == _namespace_SOFA('http://purl.obolibrary.org/obo/SO_0000181'):
|
1968
1968
|
return True
|
1969
|
-
if uri ==
|
1969
|
+
if uri == _namespace_SOFA('http://purl.obolibrary.org/obo/SO_0000183'):
|
1970
1970
|
return True
|
1971
|
-
if uri ==
|
1971
|
+
if uri == _namespace_SOFA('http://purl.obolibrary.org/obo/SO_0000185'):
|
1972
1972
|
return True
|
1973
|
-
if uri ==
|
1973
|
+
if uri == _namespace_SOFA('http://purl.obolibrary.org/obo/SO_0000187'):
|
1974
1974
|
return True
|
1975
|
-
if uri ==
|
1975
|
+
if uri == _namespace_SOFA('http://purl.obolibrary.org/obo/SO_0000188'):
|
1976
1976
|
return True
|
1977
|
-
if uri ==
|
1977
|
+
if uri == _namespace_SOFA('http://purl.obolibrary.org/obo/SO_0000193'):
|
1978
1978
|
return True
|
1979
|
-
if uri ==
|
1979
|
+
if uri == _namespace_SOFA('http://purl.obolibrary.org/obo/SO_0000195'):
|
1980
1980
|
return True
|
1981
|
-
if uri ==
|
1981
|
+
if uri == _namespace_SOFA('http://purl.obolibrary.org/obo/SO_0000196'):
|
1982
1982
|
return True
|
1983
|
-
if uri ==
|
1983
|
+
if uri == _namespace_SOFA('http://purl.obolibrary.org/obo/SO_0000197'):
|
1984
1984
|
return True
|
1985
|
-
if uri ==
|
1985
|
+
if uri == _namespace_SOFA('http://purl.obolibrary.org/obo/SO_0000198'):
|
1986
1986
|
return True
|
1987
|
-
if uri ==
|
1987
|
+
if uri == _namespace_SOFA('http://purl.obolibrary.org/obo/SO_0000200'):
|
1988
1988
|
return True
|
1989
|
-
if uri ==
|
1989
|
+
if uri == _namespace_SOFA('http://purl.obolibrary.org/obo/SO_0000203'):
|
1990
1990
|
return True
|
1991
|
-
if uri ==
|
1991
|
+
if uri == _namespace_SOFA('http://purl.obolibrary.org/obo/SO_0000204'):
|
1992
1992
|
return True
|
1993
|
-
if uri ==
|
1993
|
+
if uri == _namespace_SOFA('http://purl.obolibrary.org/obo/SO_0000205'):
|
1994
1994
|
return True
|
1995
|
-
if uri ==
|
1995
|
+
if uri == _namespace_SOFA('http://purl.obolibrary.org/obo/SO_0000209'):
|
1996
1996
|
return True
|
1997
|
-
if uri ==
|
1997
|
+
if uri == _namespace_SOFA('http://purl.obolibrary.org/obo/SO_0000233'):
|
1998
1998
|
return True
|
1999
|
-
if uri ==
|
1999
|
+
if uri == _namespace_SOFA('http://purl.obolibrary.org/obo/SO_0000234'):
|
2000
2000
|
return True
|
2001
|
-
if uri ==
|
2001
|
+
if uri == _namespace_SOFA('http://purl.obolibrary.org/obo/SO_0000235'):
|
2002
2002
|
return True
|
2003
|
-
if uri ==
|
2003
|
+
if uri == _namespace_SOFA('http://purl.obolibrary.org/obo/SO_0000236'):
|
2004
2004
|
return True
|
2005
|
-
if uri ==
|
2005
|
+
if uri == _namespace_SOFA('http://purl.obolibrary.org/obo/SO_0000239'):
|
2006
2006
|
return True
|
2007
|
-
if uri ==
|
2007
|
+
if uri == _namespace_SOFA('http://purl.obolibrary.org/obo/SO_0000252'):
|
2008
2008
|
return True
|
2009
|
-
if uri ==
|
2009
|
+
if uri == _namespace_SOFA('http://purl.obolibrary.org/obo/SO_0000253'):
|
2010
2010
|
return True
|
2011
|
-
if uri ==
|
2011
|
+
if uri == _namespace_SOFA('http://purl.obolibrary.org/obo/SO_0000274'):
|
2012
2012
|
return True
|
2013
|
-
if uri ==
|
2013
|
+
if uri == _namespace_SOFA('http://purl.obolibrary.org/obo/SO_0000275'):
|
2014
2014
|
return True
|
2015
|
-
if uri ==
|
2015
|
+
if uri == _namespace_SOFA('http://purl.obolibrary.org/obo/SO_0000276'):
|
2016
2016
|
return True
|
2017
|
-
if uri ==
|
2017
|
+
if uri == _namespace_SOFA('http://purl.obolibrary.org/obo/SO_0000289'):
|
2018
2018
|
return True
|
2019
|
-
if uri ==
|
2019
|
+
if uri == _namespace_SOFA('http://purl.obolibrary.org/obo/SO_0000294'):
|
2020
2020
|
return True
|
2021
|
-
if uri ==
|
2021
|
+
if uri == _namespace_SOFA('http://purl.obolibrary.org/obo/SO_0000296'):
|
2022
2022
|
return True
|
2023
|
-
if uri ==
|
2023
|
+
if uri == _namespace_SOFA('http://purl.obolibrary.org/obo/SO_0000303'):
|
2024
2024
|
return True
|
2025
|
-
if uri ==
|
2025
|
+
if uri == _namespace_SOFA('http://purl.obolibrary.org/obo/SO_0000305'):
|
2026
2026
|
return True
|
2027
|
-
if uri ==
|
2027
|
+
if uri == _namespace_SOFA('http://purl.obolibrary.org/obo/SO_0000306'):
|
2028
2028
|
return True
|
2029
|
-
if uri ==
|
2029
|
+
if uri == _namespace_SOFA('http://purl.obolibrary.org/obo/SO_0000307'):
|
2030
2030
|
return True
|
2031
|
-
if uri ==
|
2031
|
+
if uri == _namespace_SOFA('http://purl.obolibrary.org/obo/SO_0000314'):
|
2032
2032
|
return True
|
2033
|
-
if uri ==
|
2033
|
+
if uri == _namespace_SOFA('http://purl.obolibrary.org/obo/SO_0000315'):
|
2034
2034
|
return True
|
2035
|
-
if uri ==
|
2035
|
+
if uri == _namespace_SOFA('http://purl.obolibrary.org/obo/SO_0000316'):
|
2036
2036
|
return True
|
2037
|
-
if uri ==
|
2037
|
+
if uri == _namespace_SOFA('http://purl.obolibrary.org/obo/SO_0000318'):
|
2038
2038
|
return True
|
2039
|
-
if uri ==
|
2039
|
+
if uri == _namespace_SOFA('http://purl.obolibrary.org/obo/SO_0000319'):
|
2040
2040
|
return True
|
2041
|
-
if uri ==
|
2041
|
+
if uri == _namespace_SOFA('http://purl.obolibrary.org/obo/SO_0000324'):
|
2042
2042
|
return True
|
2043
|
-
if uri ==
|
2043
|
+
if uri == _namespace_SOFA('http://purl.obolibrary.org/obo/SO_0000325'):
|
2044
2044
|
return True
|
2045
|
-
if uri ==
|
2045
|
+
if uri == _namespace_SOFA('http://purl.obolibrary.org/obo/SO_0000326'):
|
2046
2046
|
return True
|
2047
|
-
if uri ==
|
2047
|
+
if uri == _namespace_SOFA('http://purl.obolibrary.org/obo/SO_0000330'):
|
2048
2048
|
return True
|
2049
|
-
if uri ==
|
2049
|
+
if uri == _namespace_SOFA('http://purl.obolibrary.org/obo/SO_0000331'):
|
2050
2050
|
return True
|
2051
|
-
if uri ==
|
2051
|
+
if uri == _namespace_SOFA('http://purl.obolibrary.org/obo/SO_0000332'):
|
2052
2052
|
return True
|
2053
|
-
if uri ==
|
2053
|
+
if uri == _namespace_SOFA('http://purl.obolibrary.org/obo/SO_0000333'):
|
2054
2054
|
return True
|
2055
|
-
if uri ==
|
2055
|
+
if uri == _namespace_SOFA('http://purl.obolibrary.org/obo/SO_0000334'):
|
2056
2056
|
return True
|
2057
|
-
if uri ==
|
2057
|
+
if uri == _namespace_SOFA('http://purl.obolibrary.org/obo/SO_0000336'):
|
2058
2058
|
return True
|
2059
|
-
if uri ==
|
2059
|
+
if uri == _namespace_SOFA('http://purl.obolibrary.org/obo/SO_0000337'):
|
2060
2060
|
return True
|
2061
|
-
if uri ==
|
2061
|
+
if uri == _namespace_SOFA('http://purl.obolibrary.org/obo/SO_0000340'):
|
2062
2062
|
return True
|
2063
|
-
if uri ==
|
2063
|
+
if uri == _namespace_SOFA('http://purl.obolibrary.org/obo/SO_0000341'):
|
2064
2064
|
return True
|
2065
|
-
if uri ==
|
2065
|
+
if uri == _namespace_SOFA('http://purl.obolibrary.org/obo/SO_0000343'):
|
2066
2066
|
return True
|
2067
|
-
if uri ==
|
2067
|
+
if uri == _namespace_SOFA('http://purl.obolibrary.org/obo/SO_0000344'):
|
2068
2068
|
return True
|
2069
|
-
if uri ==
|
2069
|
+
if uri == _namespace_SOFA('http://purl.obolibrary.org/obo/SO_0000345'):
|
2070
2070
|
return True
|
2071
|
-
if uri ==
|
2071
|
+
if uri == _namespace_SOFA('http://purl.obolibrary.org/obo/SO_0000347'):
|
2072
2072
|
return True
|
2073
|
-
if uri ==
|
2073
|
+
if uri == _namespace_SOFA('http://purl.obolibrary.org/obo/SO_0000349'):
|
2074
2074
|
return True
|
2075
|
-
if uri ==
|
2075
|
+
if uri == _namespace_SOFA('http://purl.obolibrary.org/obo/SO_0000353'):
|
2076
2076
|
return True
|
2077
|
-
if uri ==
|
2077
|
+
if uri == _namespace_SOFA('http://purl.obolibrary.org/obo/SO_0000360'):
|
2078
2078
|
return True
|
2079
|
-
if uri ==
|
2079
|
+
if uri == _namespace_SOFA('http://purl.obolibrary.org/obo/SO_0000366'):
|
2080
2080
|
return True
|
2081
|
-
if uri ==
|
2081
|
+
if uri == _namespace_SOFA('http://purl.obolibrary.org/obo/SO_0000368'):
|
2082
2082
|
return True
|
2083
|
-
if uri ==
|
2083
|
+
if uri == _namespace_SOFA('http://purl.obolibrary.org/obo/SO_0000370'):
|
2084
2084
|
return True
|
2085
|
-
if uri ==
|
2085
|
+
if uri == _namespace_SOFA('http://purl.obolibrary.org/obo/SO_0000372'):
|
2086
2086
|
return True
|
2087
|
-
if uri ==
|
2087
|
+
if uri == _namespace_SOFA('http://purl.obolibrary.org/obo/SO_0000374'):
|
2088
2088
|
return True
|
2089
|
-
if uri ==
|
2089
|
+
if uri == _namespace_SOFA('http://purl.obolibrary.org/obo/SO_0000375'):
|
2090
2090
|
return True
|
2091
|
-
if uri ==
|
2091
|
+
if uri == _namespace_SOFA('http://purl.obolibrary.org/obo/SO_0000380'):
|
2092
2092
|
return True
|
2093
|
-
if uri ==
|
2093
|
+
if uri == _namespace_SOFA('http://purl.obolibrary.org/obo/SO_0000385'):
|
2094
2094
|
return True
|
2095
|
-
if uri ==
|
2095
|
+
if uri == _namespace_SOFA('http://purl.obolibrary.org/obo/SO_0000386'):
|
2096
2096
|
return True
|
2097
|
-
if uri ==
|
2097
|
+
if uri == _namespace_SOFA('http://purl.obolibrary.org/obo/SO_0000390'):
|
2098
2098
|
return True
|
2099
|
-
if uri ==
|
2099
|
+
if uri == _namespace_SOFA('http://purl.obolibrary.org/obo/SO_0000391'):
|
2100
2100
|
return True
|
2101
|
-
if uri ==
|
2101
|
+
if uri == _namespace_SOFA('http://purl.obolibrary.org/obo/SO_0000392'):
|
2102
2102
|
return True
|
2103
|
-
if uri ==
|
2103
|
+
if uri == _namespace_SOFA('http://purl.obolibrary.org/obo/SO_0000393'):
|
2104
2104
|
return True
|
2105
|
-
if uri ==
|
2105
|
+
if uri == _namespace_SOFA('http://purl.obolibrary.org/obo/SO_0000394'):
|
2106
2106
|
return True
|
2107
|
-
if uri ==
|
2107
|
+
if uri == _namespace_SOFA('http://purl.obolibrary.org/obo/SO_0000395'):
|
2108
2108
|
return True
|
2109
|
-
if uri ==
|
2109
|
+
if uri == _namespace_SOFA('http://purl.obolibrary.org/obo/SO_0000396'):
|
2110
2110
|
return True
|
2111
|
-
if uri ==
|
2111
|
+
if uri == _namespace_SOFA('http://purl.obolibrary.org/obo/SO_0000397'):
|
2112
2112
|
return True
|
2113
|
-
if uri ==
|
2113
|
+
if uri == _namespace_SOFA('http://purl.obolibrary.org/obo/SO_0000398'):
|
2114
2114
|
return True
|
2115
|
-
if uri ==
|
2115
|
+
if uri == _namespace_SOFA('http://purl.obolibrary.org/obo/SO_0000399'):
|
2116
2116
|
return True
|
2117
|
-
if uri ==
|
2117
|
+
if uri == _namespace_SOFA('http://purl.obolibrary.org/obo/SO_0000403'):
|
2118
2118
|
return True
|
2119
|
-
if uri ==
|
2119
|
+
if uri == _namespace_SOFA('http://purl.obolibrary.org/obo/SO_0000404'):
|
2120
2120
|
return True
|
2121
|
-
if uri ==
|
2121
|
+
if uri == _namespace_SOFA('http://purl.obolibrary.org/obo/SO_0000405'):
|
2122
2122
|
return True
|
2123
|
-
if uri ==
|
2123
|
+
if uri == _namespace_SOFA('http://purl.obolibrary.org/obo/SO_0000407'):
|
2124
2124
|
return True
|
2125
|
-
if uri ==
|
2125
|
+
if uri == _namespace_SOFA('http://purl.obolibrary.org/obo/SO_0000409'):
|
2126
2126
|
return True
|
2127
|
-
if uri ==
|
2127
|
+
if uri == _namespace_SOFA('http://purl.obolibrary.org/obo/SO_0000410'):
|
2128
2128
|
return True
|
2129
|
-
if uri ==
|
2129
|
+
if uri == _namespace_SOFA('http://purl.obolibrary.org/obo/SO_0000412'):
|
2130
2130
|
return True
|
2131
|
-
if uri ==
|
2131
|
+
if uri == _namespace_SOFA('http://purl.obolibrary.org/obo/SO_0000413'):
|
2132
2132
|
return True
|
2133
|
-
if uri ==
|
2133
|
+
if uri == _namespace_SOFA('http://purl.obolibrary.org/obo/SO_0000418'):
|
2134
2134
|
return True
|
2135
|
-
if uri ==
|
2135
|
+
if uri == _namespace_SOFA('http://purl.obolibrary.org/obo/SO_0000419'):
|
2136
2136
|
return True
|
2137
|
-
if uri ==
|
2137
|
+
if uri == _namespace_SOFA('http://purl.obolibrary.org/obo/SO_0000436'):
|
2138
2138
|
return True
|
2139
|
-
if uri ==
|
2139
|
+
if uri == _namespace_SOFA('http://purl.obolibrary.org/obo/SO_0000441'):
|
2140
2140
|
return True
|
2141
|
-
if uri ==
|
2141
|
+
if uri == _namespace_SOFA('http://purl.obolibrary.org/obo/SO_0000442'):
|
2142
2142
|
return True
|
2143
|
-
if uri ==
|
2143
|
+
if uri == _namespace_SOFA('http://purl.obolibrary.org/obo/SO_0000454'):
|
2144
2144
|
return True
|
2145
|
-
if uri ==
|
2145
|
+
if uri == _namespace_SOFA('http://purl.obolibrary.org/obo/SO_0000462'):
|
2146
2146
|
return True
|
2147
|
-
if uri ==
|
2147
|
+
if uri == _namespace_SOFA('http://purl.obolibrary.org/obo/SO_0000464'):
|
2148
2148
|
return True
|
2149
|
-
if uri ==
|
2149
|
+
if uri == _namespace_SOFA('http://purl.obolibrary.org/obo/SO_0000468'):
|
2150
2150
|
return True
|
2151
|
-
if uri ==
|
2151
|
+
if uri == _namespace_SOFA('http://purl.obolibrary.org/obo/SO_0000472'):
|
2152
2152
|
return True
|
2153
|
-
if uri ==
|
2153
|
+
if uri == _namespace_SOFA('http://purl.obolibrary.org/obo/SO_0000474'):
|
2154
2154
|
return True
|
2155
|
-
if uri ==
|
2155
|
+
if uri == _namespace_SOFA('http://purl.obolibrary.org/obo/SO_0000483'):
|
2156
2156
|
return True
|
2157
|
-
if uri ==
|
2157
|
+
if uri == _namespace_SOFA('http://purl.obolibrary.org/obo/SO_0000484'):
|
2158
2158
|
return True
|
2159
|
-
if uri ==
|
2159
|
+
if uri == _namespace_SOFA('http://purl.obolibrary.org/obo/SO_0000486'):
|
2160
2160
|
return True
|
2161
|
-
if uri ==
|
2161
|
+
if uri == _namespace_SOFA('http://purl.obolibrary.org/obo/SO_0000499'):
|
2162
2162
|
return True
|
2163
|
-
if uri ==
|
2163
|
+
if uri == _namespace_SOFA('http://purl.obolibrary.org/obo/SO_0000502'):
|
2164
2164
|
return True
|
2165
|
-
if uri ==
|
2165
|
+
if uri == _namespace_SOFA('http://purl.obolibrary.org/obo/SO_0000551'):
|
2166
2166
|
return True
|
2167
|
-
if uri ==
|
2167
|
+
if uri == _namespace_SOFA('http://purl.obolibrary.org/obo/SO_0000553'):
|
2168
2168
|
return True
|
2169
|
-
if uri ==
|
2169
|
+
if uri == _namespace_SOFA('http://purl.obolibrary.org/obo/SO_0000577'):
|
2170
2170
|
return True
|
2171
|
-
if uri ==
|
2171
|
+
if uri == _namespace_SOFA('http://purl.obolibrary.org/obo/SO_0000581'):
|
2172
2172
|
return True
|
2173
|
-
if uri ==
|
2173
|
+
if uri == _namespace_SOFA('http://purl.obolibrary.org/obo/SO_0000587'):
|
2174
2174
|
return True
|
2175
|
-
if uri ==
|
2175
|
+
if uri == _namespace_SOFA('http://purl.obolibrary.org/obo/SO_0000588'):
|
2176
2176
|
return True
|
2177
|
-
if uri ==
|
2177
|
+
if uri == _namespace_SOFA('http://purl.obolibrary.org/obo/SO_0000590'):
|
2178
2178
|
return True
|
2179
|
-
if uri ==
|
2179
|
+
if uri == _namespace_SOFA('http://purl.obolibrary.org/obo/SO_0000593'):
|
2180
2180
|
return True
|
2181
|
-
if uri ==
|
2181
|
+
if uri == _namespace_SOFA('http://purl.obolibrary.org/obo/SO_0000602'):
|
2182
2182
|
return True
|
2183
|
-
if uri ==
|
2183
|
+
if uri == _namespace_SOFA('http://purl.obolibrary.org/obo/SO_0000603'):
|
2184
2184
|
return True
|
2185
|
-
if uri ==
|
2185
|
+
if uri == _namespace_SOFA('http://purl.obolibrary.org/obo/SO_0000605'):
|
2186
2186
|
return True
|
2187
|
-
if uri ==
|
2187
|
+
if uri == _namespace_SOFA('http://purl.obolibrary.org/obo/SO_0000610'):
|
2188
2188
|
return True
|
2189
|
-
if uri ==
|
2189
|
+
if uri == _namespace_SOFA('http://purl.obolibrary.org/obo/SO_0000611'):
|
2190
2190
|
return True
|
2191
|
-
if uri ==
|
2191
|
+
if uri == _namespace_SOFA('http://purl.obolibrary.org/obo/SO_0000612'):
|
2192
2192
|
return True
|
2193
|
-
if uri ==
|
2193
|
+
if uri == _namespace_SOFA('http://purl.obolibrary.org/obo/SO_0000616'):
|
2194
2194
|
return True
|
2195
|
-
if uri ==
|
2195
|
+
if uri == _namespace_SOFA('http://purl.obolibrary.org/obo/SO_0000624'):
|
2196
2196
|
return True
|
2197
|
-
if uri ==
|
2197
|
+
if uri == _namespace_SOFA('http://purl.obolibrary.org/obo/SO_0000625'):
|
2198
2198
|
return True
|
2199
|
-
if uri ==
|
2199
|
+
if uri == _namespace_SOFA('http://purl.obolibrary.org/obo/SO_0000627'):
|
2200
2200
|
return True
|
2201
|
-
if uri ==
|
2201
|
+
if uri == _namespace_SOFA('http://purl.obolibrary.org/obo/SO_0000628'):
|
2202
2202
|
return True
|
2203
|
-
if uri ==
|
2203
|
+
if uri == _namespace_SOFA('http://purl.obolibrary.org/obo/SO_0000643'):
|
2204
2204
|
return True
|
2205
|
-
if uri ==
|
2205
|
+
if uri == _namespace_SOFA('http://purl.obolibrary.org/obo/SO_0000644'):
|
2206
2206
|
return True
|
2207
|
-
if uri ==
|
2207
|
+
if uri == _namespace_SOFA('http://purl.obolibrary.org/obo/SO_0000645'):
|
2208
2208
|
return True
|
2209
|
-
if uri ==
|
2209
|
+
if uri == _namespace_SOFA('http://purl.obolibrary.org/obo/SO_0000646'):
|
2210
2210
|
return True
|
2211
|
-
if uri ==
|
2211
|
+
if uri == _namespace_SOFA('http://purl.obolibrary.org/obo/SO_0000649'):
|
2212
2212
|
return True
|
2213
|
-
if uri ==
|
2213
|
+
if uri == _namespace_SOFA('http://purl.obolibrary.org/obo/SO_0000650'):
|
2214
2214
|
return True
|
2215
|
-
if uri ==
|
2215
|
+
if uri == _namespace_SOFA('http://purl.obolibrary.org/obo/SO_0000651'):
|
2216
2216
|
return True
|
2217
|
-
if uri ==
|
2217
|
+
if uri == _namespace_SOFA('http://purl.obolibrary.org/obo/SO_0000652'):
|
2218
2218
|
return True
|
2219
|
-
if uri ==
|
2219
|
+
if uri == _namespace_SOFA('http://purl.obolibrary.org/obo/SO_0000653'):
|
2220
2220
|
return True
|
2221
|
-
if uri ==
|
2221
|
+
if uri == _namespace_SOFA('http://purl.obolibrary.org/obo/SO_0000655'):
|
2222
2222
|
return True
|
2223
|
-
if uri ==
|
2223
|
+
if uri == _namespace_SOFA('http://purl.obolibrary.org/obo/SO_0000657'):
|
2224
2224
|
return True
|
2225
|
-
if uri ==
|
2225
|
+
if uri == _namespace_SOFA('http://purl.obolibrary.org/obo/SO_0000658'):
|
2226
2226
|
return True
|
2227
|
-
if uri ==
|
2227
|
+
if uri == _namespace_SOFA('http://purl.obolibrary.org/obo/SO_0000662'):
|
2228
2228
|
return True
|
2229
|
-
if uri ==
|
2229
|
+
if uri == _namespace_SOFA('http://purl.obolibrary.org/obo/SO_0000667'):
|
2230
2230
|
return True
|
2231
|
-
if uri ==
|
2231
|
+
if uri == _namespace_SOFA('http://purl.obolibrary.org/obo/SO_0000668'):
|
2232
2232
|
return True
|
2233
|
-
if uri ==
|
2233
|
+
if uri == _namespace_SOFA('http://purl.obolibrary.org/obo/SO_0000673'):
|
2234
2234
|
return True
|
2235
|
-
if uri ==
|
2235
|
+
if uri == _namespace_SOFA('http://purl.obolibrary.org/obo/SO_0000684'):
|
2236
2236
|
return True
|
2237
|
-
if uri ==
|
2237
|
+
if uri == _namespace_SOFA('http://purl.obolibrary.org/obo/SO_0000687'):
|
2238
2238
|
return True
|
2239
|
-
if uri ==
|
2239
|
+
if uri == _namespace_SOFA('http://purl.obolibrary.org/obo/SO_0000688'):
|
2240
2240
|
return True
|
2241
|
-
if uri ==
|
2241
|
+
if uri == _namespace_SOFA('http://purl.obolibrary.org/obo/SO_0000689'):
|
2242
2242
|
return True
|
2243
|
-
if uri ==
|
2243
|
+
if uri == _namespace_SOFA('http://purl.obolibrary.org/obo/SO_0000694'):
|
2244
2244
|
return True
|
2245
|
-
if uri ==
|
2245
|
+
if uri == _namespace_SOFA('http://purl.obolibrary.org/obo/SO_0000695'):
|
2246
2246
|
return True
|
2247
|
-
if uri ==
|
2247
|
+
if uri == _namespace_SOFA('http://purl.obolibrary.org/obo/SO_0000696'):
|
2248
2248
|
return True
|
2249
|
-
if uri ==
|
2249
|
+
if uri == _namespace_SOFA('http://purl.obolibrary.org/obo/SO_0000699'):
|
2250
2250
|
return True
|
2251
|
-
if uri ==
|
2251
|
+
if uri == _namespace_SOFA('http://purl.obolibrary.org/obo/SO_0000700'):
|
2252
2252
|
return True
|
2253
|
-
if uri ==
|
2253
|
+
if uri == _namespace_SOFA('http://purl.obolibrary.org/obo/SO_0000701'):
|
2254
2254
|
return True
|
2255
|
-
if uri ==
|
2255
|
+
if uri == _namespace_SOFA('http://purl.obolibrary.org/obo/SO_0000702'):
|
2256
2256
|
return True
|
2257
|
-
if uri ==
|
2257
|
+
if uri == _namespace_SOFA('http://purl.obolibrary.org/obo/SO_0000703'):
|
2258
2258
|
return True
|
2259
|
-
if uri ==
|
2259
|
+
if uri == _namespace_SOFA('http://purl.obolibrary.org/obo/SO_0000704'):
|
2260
2260
|
return True
|
2261
|
-
if uri ==
|
2261
|
+
if uri == _namespace_SOFA('http://purl.obolibrary.org/obo/SO_0000705'):
|
2262
2262
|
return True
|
2263
|
-
if uri ==
|
2263
|
+
if uri == _namespace_SOFA('http://purl.obolibrary.org/obo/SO_0000706'):
|
2264
2264
|
return True
|
2265
|
-
if uri ==
|
2265
|
+
if uri == _namespace_SOFA('http://purl.obolibrary.org/obo/SO_0000714'):
|
2266
2266
|
return True
|
2267
|
-
if uri ==
|
2267
|
+
if uri == _namespace_SOFA('http://purl.obolibrary.org/obo/SO_0000715'):
|
2268
2268
|
return True
|
2269
|
-
if uri ==
|
2269
|
+
if uri == _namespace_SOFA('http://purl.obolibrary.org/obo/SO_0000717'):
|
2270
2270
|
return True
|
2271
|
-
if uri ==
|
2271
|
+
if uri == _namespace_SOFA('http://purl.obolibrary.org/obo/SO_0000719'):
|
2272
2272
|
return True
|
2273
|
-
if uri ==
|
2273
|
+
if uri == _namespace_SOFA('http://purl.obolibrary.org/obo/SO_0000724'):
|
2274
2274
|
return True
|
2275
|
-
if uri ==
|
2275
|
+
if uri == _namespace_SOFA('http://purl.obolibrary.org/obo/SO_0000725'):
|
2276
2276
|
return True
|
2277
|
-
if uri ==
|
2277
|
+
if uri == _namespace_SOFA('http://purl.obolibrary.org/obo/SO_0000727'):
|
2278
2278
|
return True
|
2279
|
-
if uri ==
|
2279
|
+
if uri == _namespace_SOFA('http://purl.obolibrary.org/obo/SO_0000730'):
|
2280
2280
|
return True
|
2281
|
-
if uri ==
|
2281
|
+
if uri == _namespace_SOFA('http://purl.obolibrary.org/obo/SO_0000752'):
|
2282
2282
|
return True
|
2283
|
-
if uri ==
|
2283
|
+
if uri == _namespace_SOFA('http://purl.obolibrary.org/obo/SO_0000753'):
|
2284
2284
|
return True
|
2285
|
-
if uri ==
|
2285
|
+
if uri == _namespace_SOFA('http://purl.obolibrary.org/obo/SO_0000777'):
|
2286
2286
|
return True
|
2287
|
-
if uri ==
|
2287
|
+
if uri == _namespace_SOFA('http://purl.obolibrary.org/obo/SO_0000778'):
|
2288
2288
|
return True
|
2289
|
-
if uri ==
|
2289
|
+
if uri == _namespace_SOFA('http://purl.obolibrary.org/obo/SO_0000830'):
|
2290
2290
|
return True
|
2291
|
-
if uri ==
|
2291
|
+
if uri == _namespace_SOFA('http://purl.obolibrary.org/obo/SO_0000831'):
|
2292
2292
|
return True
|
2293
|
-
if uri ==
|
2293
|
+
if uri == _namespace_SOFA('http://purl.obolibrary.org/obo/SO_0000833'):
|
2294
2294
|
return True
|
2295
|
-
if uri ==
|
2295
|
+
if uri == _namespace_SOFA('http://purl.obolibrary.org/obo/SO_0000834'):
|
2296
2296
|
return True
|
2297
|
-
if uri ==
|
2297
|
+
if uri == _namespace_SOFA('http://purl.obolibrary.org/obo/SO_0000835'):
|
2298
2298
|
return True
|
2299
|
-
if uri ==
|
2299
|
+
if uri == _namespace_SOFA('http://purl.obolibrary.org/obo/SO_0000836'):
|
2300
2300
|
return True
|
2301
|
-
if uri ==
|
2301
|
+
if uri == _namespace_SOFA('http://purl.obolibrary.org/obo/SO_0000837'):
|
2302
2302
|
return True
|
2303
|
-
if uri ==
|
2303
|
+
if uri == _namespace_SOFA('http://purl.obolibrary.org/obo/SO_0000839'):
|
2304
2304
|
return True
|
2305
|
-
if uri ==
|
2305
|
+
if uri == _namespace_SOFA('http://purl.obolibrary.org/obo/SO_0000841'):
|
2306
2306
|
return True
|
2307
|
-
if uri ==
|
2307
|
+
if uri == _namespace_SOFA('http://purl.obolibrary.org/obo/SO_0000842'):
|
2308
2308
|
return True
|
2309
|
-
if uri ==
|
2309
|
+
if uri == _namespace_SOFA('http://purl.obolibrary.org/obo/SO_0000851'):
|
2310
2310
|
return True
|
2311
|
-
if uri ==
|
2311
|
+
if uri == _namespace_SOFA('http://purl.obolibrary.org/obo/SO_0000852'):
|
2312
2312
|
return True
|
2313
|
-
if uri ==
|
2313
|
+
if uri == _namespace_SOFA('http://purl.obolibrary.org/obo/SO_0001000'):
|
2314
2314
|
return True
|
2315
|
-
if uri ==
|
2315
|
+
if uri == _namespace_SOFA('http://purl.obolibrary.org/obo/SO_0001001'):
|
2316
2316
|
return True
|
2317
|
-
if uri ==
|
2317
|
+
if uri == _namespace_SOFA('http://purl.obolibrary.org/obo/SO_0001002'):
|
2318
2318
|
return True
|
2319
|
-
if uri ==
|
2319
|
+
if uri == _namespace_SOFA('http://purl.obolibrary.org/obo/SO_0001019'):
|
2320
2320
|
return True
|
2321
|
-
if uri ==
|
2321
|
+
if uri == _namespace_SOFA('http://purl.obolibrary.org/obo/SO_0001037'):
|
2322
2322
|
return True
|
2323
|
-
if uri ==
|
2323
|
+
if uri == _namespace_SOFA('http://purl.obolibrary.org/obo/SO_0001039'):
|
2324
2324
|
return True
|
2325
|
-
if uri ==
|
2325
|
+
if uri == _namespace_SOFA('http://purl.obolibrary.org/obo/SO_0001055'):
|
2326
2326
|
return True
|
2327
|
-
if uri ==
|
2327
|
+
if uri == _namespace_SOFA('http://purl.obolibrary.org/obo/SO_0001056'):
|
2328
2328
|
return True
|
2329
|
-
if uri ==
|
2329
|
+
if uri == _namespace_SOFA('http://purl.obolibrary.org/obo/SO_0001059'):
|
2330
2330
|
return True
|
2331
|
-
if uri ==
|
2331
|
+
if uri == _namespace_SOFA('http://purl.obolibrary.org/obo/SO_0001063'):
|
2332
2332
|
return True
|
2333
|
-
if uri ==
|
2333
|
+
if uri == _namespace_SOFA('http://purl.obolibrary.org/obo/SO_0001214'):
|
2334
2334
|
return True
|
2335
|
-
if uri ==
|
2335
|
+
if uri == _namespace_SOFA('http://purl.obolibrary.org/obo/SO_0001215'):
|
2336
2336
|
return True
|
2337
|
-
if uri ==
|
2337
|
+
if uri == _namespace_SOFA('http://purl.obolibrary.org/obo/SO_0001235'):
|
2338
2338
|
return True
|
2339
|
-
if uri ==
|
2339
|
+
if uri == _namespace_SOFA('http://purl.obolibrary.org/obo/SO_0001236'):
|
2340
2340
|
return True
|
2341
|
-
if uri ==
|
2341
|
+
if uri == _namespace_SOFA('http://purl.obolibrary.org/obo/SO_0001248'):
|
2342
2342
|
return True
|
2343
|
-
if uri ==
|
2343
|
+
if uri == _namespace_SOFA('http://purl.obolibrary.org/obo/SO_0001409'):
|
2344
2344
|
return True
|
2345
|
-
if uri ==
|
2345
|
+
if uri == _namespace_SOFA('http://purl.obolibrary.org/obo/SO_0001410'):
|
2346
2346
|
return True
|
2347
|
-
if uri ==
|
2347
|
+
if uri == _namespace_SOFA('http://purl.obolibrary.org/obo/SO_0001411'):
|
2348
2348
|
return True
|
2349
|
-
if uri ==
|
2349
|
+
if uri == _namespace_SOFA('http://purl.obolibrary.org/obo/SO_0001412'):
|
2350
2350
|
return True
|
2351
|
-
if uri ==
|
2351
|
+
if uri == _namespace_SOFA('http://purl.obolibrary.org/obo/SO_0001419'):
|
2352
2352
|
return True
|
2353
|
-
if uri ==
|
2353
|
+
if uri == _namespace_SOFA('http://purl.obolibrary.org/obo/SO_0001420'):
|
2354
2354
|
return True
|
2355
|
-
if uri ==
|
2355
|
+
if uri == _namespace_SOFA('http://purl.obolibrary.org/obo/SO_0001483'):
|
2356
2356
|
return True
|
2357
|
-
if uri ==
|
2357
|
+
if uri == _namespace_SOFA('http://purl.obolibrary.org/obo/SO_0001527'):
|
2358
2358
|
return True
|
2359
|
-
if uri ==
|
2359
|
+
if uri == _namespace_SOFA('http://purl.obolibrary.org/obo/SO_0001647'):
|
2360
2360
|
return True
|
2361
|
-
if uri ==
|
2361
|
+
if uri == _namespace_SOFA('http://purl.obolibrary.org/obo/SO_0001654'):
|
2362
2362
|
return True
|
2363
|
-
if uri ==
|
2363
|
+
if uri == _namespace_SOFA('http://purl.obolibrary.org/obo/SO_0001679'):
|
2364
2364
|
return True
|
2365
|
-
if uri ==
|
2365
|
+
if uri == _namespace_SOFA('http://purl.obolibrary.org/obo/SO_0001683'):
|
2366
2366
|
return True
|
2367
|
-
if uri ==
|
2367
|
+
if uri == _namespace_SOFA('http://purl.obolibrary.org/obo/SO_0001720'):
|
2368
2368
|
return True
|
2369
|
-
if uri ==
|
2369
|
+
if uri == _namespace_SOFA('http://purl.obolibrary.org/obo/SO_0001790'):
|
2370
2370
|
return True
|
2371
|
-
if uri ==
|
2371
|
+
if uri == _namespace_SOFA('http://purl.obolibrary.org/obo/SO_0005836'):
|
2372
2372
|
return True
|
2373
|
-
if uri ==
|
2373
|
+
if uri == _namespace_SOFA('http://purl.obolibrary.org/obo/SO_0005855'):
|
2374
2374
|
return True
|
2375
|
-
if uri ==
|
2375
|
+
if uri == _namespace_SOFA('http://purl.obolibrary.org/obo/SO_0100011'):
|
2376
2376
|
return True
|
2377
|
-
if uri ==
|
2377
|
+
if uri == _namespace_SOFA('http://purl.obolibrary.org/obo/SO_1000002'):
|
2378
2378
|
return True
|
2379
|
-
if uri ==
|
2379
|
+
if uri == _namespace_SOFA('http://purl.obolibrary.org/obo/SO_1000005'):
|
2380
2380
|
return True
|
2381
|
-
if uri ==
|
2381
|
+
if uri == _namespace_SOFA('http://purl.obolibrary.org/obo/SO_1000008'):
|
2382
2382
|
return True
|
2383
|
-
if uri ==
|
2383
|
+
if uri == _namespace_SOFA('http://purl.obolibrary.org/obo/SO_1000036'):
|
2384
2384
|
return True
|
2385
|
-
if uri ==
|
2385
|
+
if uri == _namespace_SOFA('http://purl.obolibrary.org/obo/SO_1001284'):
|
2386
2386
|
return True
|
2387
|
-
if uri ==
|
2387
|
+
if uri == _namespace_SOFA('http://purl.obolibrary.org/obo/SO_2000061'):
|
2388
2388
|
return True
|
2389
2389
|
return False
|
2390
2390
|
|
@@ -2418,5 +2418,5 @@ class SOFO:
|
|
2418
2418
|
return cls.has_parent(cls.__parent_properties[uri], parent)
|
2419
2419
|
return False
|
2420
2420
|
|
2421
|
-
__parent_properties = { _namespace_SOFO('http://purl.obolibrary.org/obo/http_//purl.org/obo/owl:complete_evidence_for_feature') : _namespace_SOFO('http://purl.obolibrary.org/obo/http_//purl.org/obo/owl:evidence_for_feature') , _namespace_SOFO('http://purl.obolibrary.org/obo/http_//purl.org/obo/owl:has_integral_part') : _namespace_SOFO('http://purl.obolibrary.org/obo/http_//purl.org/obo/owl:has_part') , _namespace_SOFO('http://purl.obolibrary.org/obo/http_//purl.org/obo/owl:homologous_to') : _namespace_SOFO('http://purl.obolibrary.org/obo/http_//purl.org/obo/owl:similar_to') , _namespace_SOFO('http://purl.obolibrary.org/obo/http_//purl.org/obo/owl:integral_part_of') : _namespace_SOFO('http://purl.obolibrary.org/obo/http_//purl.org/obo/owl:part_of') , _namespace_SOFO('http://purl.obolibrary.org/obo/http_//purl.org/obo/owl:member_of') : _namespace_SOFO('http://purl.obolibrary.org/obo/http_//purl.org/obo/owl:part_of') , _namespace_SOFO('http://purl.obolibrary.org/obo/http_//purl.org/obo/owl:non_functional_homolog_of') : _namespace_SOFO('http://purl.obolibrary.org/obo/http_//purl.org/obo/owl:homologous_to') , _namespace_SOFO('http://purl.obolibrary.org/obo/http_//purl.org/obo/owl:orthologous_to') : _namespace_SOFO('http://purl.obolibrary.org/obo/http_//purl.org/obo/owl:homologous_to') , _namespace_SOFO('http://purl.obolibrary.org/obo/http_//purl.org/obo/owl:paralogous_to') : _namespace_SOFO('http://purl.obolibrary.org/obo/http_//purl.org/obo/owl:homologous_to') , _namespace_SOFO('http://purl.obolibrary.org/obo/http_//purl.org/obo/owl:partial_evidence_for_feature') : _namespace_SOFO('http://purl.obolibrary.org/obo/http_//purl.org/obo/owl:evidence_for_feature') , _namespace_SOFO('http://purl.obolibrary.org/obo/SO_0000001') : _namespace_SOFO('http://purl.obolibrary.org/obo/SO_0000110') , _namespace_SOFO('http://purl.obolibrary.org/obo/SO_0000004') : _namespace_SOFO('http://purl.obolibrary.org/obo/SO_0000195') , _namespace_SOFO('http://purl.obolibrary.org/obo/SO_0000005') : _namespace_SOFO('http://purl.obolibrary.org/obo/SO_0000705') , _namespace_SOFO('http://purl.obolibrary.org/obo/SO_0000006') : _namespace_SOFO('http://purl.obolibrary.org/obo/SO_0000695') , _namespace_SOFO('http://purl.obolibrary.org/obo/SO_0000057') : _namespace_SOFO('http://purl.obolibrary.org/obo/SO_0000752') , _namespace_SOFO('http://purl.obolibrary.org/obo/SO_0000059') : _namespace_SOFO('http://purl.obolibrary.org/obo/SO_0001654') , _namespace_SOFO('http://purl.obolibrary.org/obo/SO_0000101') : _namespace_SOFO('http://purl.obolibrary.org/obo/SO_0001039') , _namespace_SOFO('http://purl.obolibrary.org/obo/SO_0000102') : _namespace_SOFO('http://purl.obolibrary.org/obo/SO_0000347') , _namespace_SOFO('http://purl.obolibrary.org/obo/SO_0000112') : _namespace_SOFO('http://purl.obolibrary.org/obo/SO_0000441') , _namespace_SOFO('http://purl.obolibrary.org/obo/SO_0000113') : _namespace_SOFO('http://purl.obolibrary.org/obo/SO_0001039') , _namespace_SOFO('http://purl.obolibrary.org/obo/SO_0000114') : _namespace_SOFO('http://purl.obolibrary.org/obo/SO_0000306') , _namespace_SOFO('http://purl.obolibrary.org/obo/SO_0000120') : _namespace_SOFO('http://purl.obolibrary.org/obo/SO_0000185') , _namespace_SOFO('http://purl.obolibrary.org/obo/SO_0000139') : _namespace_SOFO('http://purl.obolibrary.org/obo/SO_0000836') , _namespace_SOFO('http://purl.obolibrary.org/obo/SO_0000143') : _namespace_SOFO('http://purl.obolibrary.org/obo/SO_0001410') , _namespace_SOFO('http://purl.obolibrary.org/obo/SO_0000147') : _namespace_SOFO('http://purl.obolibrary.org/obo/SO_0000833') , _namespace_SOFO('http://purl.obolibrary.org/obo/SO_0000151') : _namespace_SOFO('http://purl.obolibrary.org/obo/SO_0000695') , _namespace_SOFO('http://purl.obolibrary.org/obo/SO_0000159') : _namespace_SOFO('http://purl.obolibrary.org/obo/SO_0001411') , _namespace_SOFO('http://purl.obolibrary.org/obo/SO_0000161') : _namespace_SOFO('http://purl.obolibrary.org/obo/SO_0000306') , _namespace_SOFO('http://purl.obolibrary.org/obo/SO_0000162') : _namespace_SOFO('http://purl.obolibrary.org/obo/SO_0000835') , _namespace_SOFO('http://purl.obolibrary.org/obo/SO_0000163') : _namespace_SOFO('http://purl.obolibrary.org/obo/SO_0001419') , _namespace_SOFO('http://purl.obolibrary.org/obo/SO_0000164') : _namespace_SOFO('http://purl.obolibrary.org/obo/SO_0001419') , _namespace_SOFO('http://purl.obolibrary.org/obo/SO_0000165') : _namespace_SOFO('http://purl.obolibrary.org/obo/SO_0000727') , _namespace_SOFO('http://purl.obolibrary.org/obo/SO_0000167') : _namespace_SOFO('http://purl.obolibrary.org/obo/SO_0001055') , _namespace_SOFO('http://purl.obolibrary.org/obo/SO_0000177') : _namespace_SOFO('http://purl.obolibrary.org/obo/SO_0000347') , _namespace_SOFO('http://purl.obolibrary.org/obo/SO_0000178') : _namespace_SOFO('http://purl.obolibrary.org/obo/SO_0005855') , _namespace_SOFO('http://purl.obolibrary.org/obo/SO_0000181') : _namespace_SOFO('http://purl.obolibrary.org/obo/SO_0000347') , _namespace_SOFO('http://purl.obolibrary.org/obo/SO_0000183') : _namespace_SOFO('http://purl.obolibrary.org/obo/SO_0000842') , _namespace_SOFO('http://purl.obolibrary.org/obo/SO_0000185') : _namespace_SOFO('http://purl.obolibrary.org/obo/SO_0000673') , _namespace_SOFO('http://purl.obolibrary.org/obo/SO_0000188') : _namespace_SOFO('http://purl.obolibrary.org/obo/SO_0000835') , _namespace_SOFO('http://purl.obolibrary.org/obo/SO_0000193') : _namespace_SOFO('http://purl.obolibrary.org/obo/SO_0000412') , _namespace_SOFO('http://purl.obolibrary.org/obo/SO_0000195') : _namespace_SOFO('http://purl.obolibrary.org/obo/SO_0000147') , _namespace_SOFO('http://purl.obolibrary.org/obo/SO_0000198') : _namespace_SOFO('http://purl.obolibrary.org/obo/SO_0000147') , _namespace_SOFO('http://purl.obolibrary.org/obo/SO_0000200') : _namespace_SOFO('http://purl.obolibrary.org/obo/SO_0000195') , _namespace_SOFO('http://purl.obolibrary.org/obo/SO_0000203') : _namespace_SOFO('http://purl.obolibrary.org/obo/SO_0000836') , _namespace_SOFO('http://purl.obolibrary.org/obo/SO_0000204') : _namespace_SOFO('http://purl.obolibrary.org/obo/SO_0000203') , _namespace_SOFO('http://purl.obolibrary.org/obo/SO_0000205') : _namespace_SOFO('http://purl.obolibrary.org/obo/SO_0000203') , _namespace_SOFO('http://purl.obolibrary.org/obo/SO_0000209') : _namespace_SOFO('http://purl.obolibrary.org/obo/SO_0000483') , _namespace_SOFO('http://purl.obolibrary.org/obo/SO_0000234') : _namespace_SOFO('http://purl.obolibrary.org/obo/SO_0000233') , _namespace_SOFO('http://purl.obolibrary.org/obo/SO_0000235') : _namespace_SOFO('http://purl.obolibrary.org/obo/SO_0001679') , _namespace_SOFO('http://purl.obolibrary.org/obo/SO_0000236') : _namespace_SOFO('http://purl.obolibrary.org/obo/SO_0000717') , _namespace_SOFO('http://purl.obolibrary.org/obo/SO_0000239') : _namespace_SOFO('http://purl.obolibrary.org/obo/SO_0001412') , _namespace_SOFO('http://purl.obolibrary.org/obo/SO_0000289') : _namespace_SOFO('http://purl.obolibrary.org/obo/SO_0000005') , _namespace_SOFO('http://purl.obolibrary.org/obo/SO_0000294') : _namespace_SOFO('http://purl.obolibrary.org/obo/SO_0000657') , _namespace_SOFO('http://purl.obolibrary.org/obo/SO_0000303') : _namespace_SOFO('http://purl.obolibrary.org/obo/SO_0000835') , _namespace_SOFO('http://purl.obolibrary.org/obo/SO_0000305') : _namespace_SOFO('http://purl.obolibrary.org/obo/SO_0001720') , _namespace_SOFO('http://purl.obolibrary.org/obo/SO_0000306') : _namespace_SOFO('http://purl.obolibrary.org/obo/SO_0000305') , _namespace_SOFO('http://purl.obolibrary.org/obo/SO_0000307') : _namespace_SOFO('http://purl.obolibrary.org/obo/SO_0001411') , _namespace_SOFO('http://purl.obolibrary.org/obo/SO_0000314') : _namespace_SOFO('http://purl.obolibrary.org/obo/SO_0000657') , _namespace_SOFO('http://purl.obolibrary.org/obo/SO_0000315') : _namespace_SOFO('http://purl.obolibrary.org/obo/SO_0000835') , _namespace_SOFO('http://purl.obolibrary.org/obo/SO_0000316') : _namespace_SOFO('http://purl.obolibrary.org/obo/SO_0000836') , _namespace_SOFO('http://purl.obolibrary.org/obo/SO_0000318') : _namespace_SOFO('http://purl.obolibrary.org/obo/SO_0000360') , _namespace_SOFO('http://purl.obolibrary.org/obo/SO_0000319') : _namespace_SOFO('http://purl.obolibrary.org/obo/SO_0000360') , _namespace_SOFO('http://purl.obolibrary.org/obo/SO_0000324') : _namespace_SOFO('http://purl.obolibrary.org/obo/SO_0000696') , _namespace_SOFO('http://purl.obolibrary.org/obo/SO_0000325') : _namespace_SOFO('http://purl.obolibrary.org/obo/SO_0000209') , _namespace_SOFO('http://purl.obolibrary.org/obo/SO_0000326') : _namespace_SOFO('http://purl.obolibrary.org/obo/SO_0000324') , _namespace_SOFO('http://purl.obolibrary.org/obo/SO_0000330') : _namespace_SOFO('http://purl.obolibrary.org/obo/SO_0001410') , _namespace_SOFO('http://purl.obolibrary.org/obo/SO_0000331') : _namespace_SOFO('http://purl.obolibrary.org/obo/SO_0000324') , _namespace_SOFO('http://purl.obolibrary.org/obo/SO_0000332') : _namespace_SOFO('http://purl.obolibrary.org/obo/SO_0000330') , _namespace_SOFO('http://purl.obolibrary.org/obo/SO_0000334') : _namespace_SOFO('http://purl.obolibrary.org/obo/SO_0000330') , _namespace_SOFO('http://purl.obolibrary.org/obo/SO_0000337') : _namespace_SOFO('http://purl.obolibrary.org/obo/SO_0000442') , _namespace_SOFO('http://purl.obolibrary.org/obo/SO_0000340') : _namespace_SOFO('http://purl.obolibrary.org/obo/SO_0001235') , _namespace_SOFO('http://purl.obolibrary.org/obo/SO_0000341') : _namespace_SOFO('http://purl.obolibrary.org/obo/SO_0000830') , _namespace_SOFO('http://purl.obolibrary.org/obo/SO_0000343') : _namespace_SOFO('http://purl.obolibrary.org/obo/SO_0001410') , _namespace_SOFO('http://purl.obolibrary.org/obo/SO_0000344') : _namespace_SOFO('http://purl.obolibrary.org/obo/SO_0001056') , _namespace_SOFO('http://purl.obolibrary.org/obo/SO_0000347') : _namespace_SOFO('http://purl.obolibrary.org/obo/SO_0000343') , _namespace_SOFO('http://purl.obolibrary.org/obo/SO_0000349') : _namespace_SOFO('http://purl.obolibrary.org/obo/SO_0000343') , _namespace_SOFO('http://purl.obolibrary.org/obo/SO_0000353') : _namespace_SOFO('http://purl.obolibrary.org/obo/SO_0001248') , _namespace_SOFO('http://purl.obolibrary.org/obo/SO_0000360') : _namespace_SOFO('http://purl.obolibrary.org/obo/SO_0000851') , _namespace_SOFO('http://purl.obolibrary.org/obo/SO_0000366') : _namespace_SOFO('http://purl.obolibrary.org/obo/SO_0000699') , _namespace_SOFO('http://purl.obolibrary.org/obo/SO_0000368') : _namespace_SOFO('http://purl.obolibrary.org/obo/SO_0000366') , _namespace_SOFO('http://purl.obolibrary.org/obo/SO_0000370') : _namespace_SOFO('http://purl.obolibrary.org/obo/SO_0000655') , _namespace_SOFO('http://purl.obolibrary.org/obo/SO_0000372') : _namespace_SOFO('http://purl.obolibrary.org/obo/SO_0000673') , _namespace_SOFO('http://purl.obolibrary.org/obo/SO_0000374') : _namespace_SOFO('http://purl.obolibrary.org/obo/SO_0000372') , _namespace_SOFO('http://purl.obolibrary.org/obo/SO_0000375') : _namespace_SOFO('http://purl.obolibrary.org/obo/SO_0000651') , _namespace_SOFO('http://purl.obolibrary.org/obo/SO_0000380') : _namespace_SOFO('http://purl.obolibrary.org/obo/SO_0000715') , _namespace_SOFO('http://purl.obolibrary.org/obo/SO_0000385') : _namespace_SOFO('http://purl.obolibrary.org/obo/SO_0000655') , _namespace_SOFO('http://purl.obolibrary.org/obo/SO_0000386') : _namespace_SOFO('http://purl.obolibrary.org/obo/SO_0000655') , _namespace_SOFO('http://purl.obolibrary.org/obo/SO_0000390') : _namespace_SOFO('http://purl.obolibrary.org/obo/SO_0000655') , _namespace_SOFO('http://purl.obolibrary.org/obo/SO_0000391') : _namespace_SOFO('http://purl.obolibrary.org/obo/SO_0000274') , _namespace_SOFO('http://purl.obolibrary.org/obo/SO_0000392') : _namespace_SOFO('http://purl.obolibrary.org/obo/SO_0000274') , _namespace_SOFO('http://purl.obolibrary.org/obo/SO_0000393') : _namespace_SOFO('http://purl.obolibrary.org/obo/SO_0000274') , _namespace_SOFO('http://purl.obolibrary.org/obo/SO_0000394') : _namespace_SOFO('http://purl.obolibrary.org/obo/SO_0000274') , _namespace_SOFO('http://purl.obolibrary.org/obo/SO_0000395') : _namespace_SOFO('http://purl.obolibrary.org/obo/SO_0000274') , _namespace_SOFO('http://purl.obolibrary.org/obo/SO_0000396') : _namespace_SOFO('http://purl.obolibrary.org/obo/SO_0000274') , _namespace_SOFO('http://purl.obolibrary.org/obo/SO_0000397') : _namespace_SOFO('http://purl.obolibrary.org/obo/SO_0000274') , _namespace_SOFO('http://purl.obolibrary.org/obo/SO_0000398') : _namespace_SOFO('http://purl.obolibrary.org/obo/SO_0000274') , _namespace_SOFO('http://purl.obolibrary.org/obo/SO_0000399') : _namespace_SOFO('http://purl.obolibrary.org/obo/SO_0000274') , _namespace_SOFO('http://purl.obolibrary.org/obo/SO_0000403') : _namespace_SOFO('http://purl.obolibrary.org/obo/SO_0000593') , _namespace_SOFO('http://purl.obolibrary.org/obo/SO_0000404') : _namespace_SOFO('http://purl.obolibrary.org/obo/SO_0000655') , _namespace_SOFO('http://purl.obolibrary.org/obo/SO_0000405') : _namespace_SOFO('http://purl.obolibrary.org/obo/SO_0000655') , _namespace_SOFO('http://purl.obolibrary.org/obo/SO_0000407') : _namespace_SOFO('http://purl.obolibrary.org/obo/SO_0000650') , _namespace_SOFO('http://purl.obolibrary.org/obo/SO_0000409') : _namespace_SOFO('http://purl.obolibrary.org/obo/SO_0001411') , _namespace_SOFO('http://purl.obolibrary.org/obo/SO_0000410') : _namespace_SOFO('http://purl.obolibrary.org/obo/SO_0000409') , _namespace_SOFO('http://purl.obolibrary.org/obo/SO_0000412') : _namespace_SOFO('http://purl.obolibrary.org/obo/SO_0000143') , _namespace_SOFO('http://purl.obolibrary.org/obo/SO_0000413') : _namespace_SOFO('http://purl.obolibrary.org/obo/SO_0000700') , _namespace_SOFO('http://purl.obolibrary.org/obo/SO_0000436') : _namespace_SOFO('http://purl.obolibrary.org/obo/SO_0000296') , _namespace_SOFO('http://purl.obolibrary.org/obo/SO_0000441') : _namespace_SOFO('http://purl.obolibrary.org/obo/SO_0000696') , _namespace_SOFO('http://purl.obolibrary.org/obo/SO_0000442') : _namespace_SOFO('http://purl.obolibrary.org/obo/SO_0000696') , _namespace_SOFO('http://purl.obolibrary.org/obo/SO_0000454') : _namespace_SOFO('http://purl.obolibrary.org/obo/SO_0000655') , _namespace_SOFO('http://purl.obolibrary.org/obo/SO_0000462') : _namespace_SOFO('http://purl.obolibrary.org/obo/SO_0001411') , _namespace_SOFO('http://purl.obolibrary.org/obo/SO_0000472') : _namespace_SOFO('http://purl.obolibrary.org/obo/SO_0000353') , _namespace_SOFO('http://purl.obolibrary.org/obo/SO_0000483') : _namespace_SOFO('http://purl.obolibrary.org/obo/SO_0000185') , _namespace_SOFO('http://purl.obolibrary.org/obo/SO_0000499') : _namespace_SOFO('http://purl.obolibrary.org/obo/SO_0000353') , _namespace_SOFO('http://purl.obolibrary.org/obo/SO_0000551') : _namespace_SOFO('http://purl.obolibrary.org/obo/SO_0001679') , _namespace_SOFO('http://purl.obolibrary.org/obo/SO_0000577') : _namespace_SOFO('http://purl.obolibrary.org/obo/SO_0000628') , _namespace_SOFO('http://purl.obolibrary.org/obo/SO_0000581') : _namespace_SOFO('http://purl.obolibrary.org/obo/SO_0001411') , _namespace_SOFO('http://purl.obolibrary.org/obo/SO_0000587') : _namespace_SOFO('http://purl.obolibrary.org/obo/SO_0000588') , _namespace_SOFO('http://purl.obolibrary.org/obo/SO_0000588') : _namespace_SOFO('http://purl.obolibrary.org/obo/SO_0000188') , _namespace_SOFO('http://purl.obolibrary.org/obo/SO_0000593') : _namespace_SOFO('http://purl.obolibrary.org/obo/SO_0000275') , _namespace_SOFO('http://purl.obolibrary.org/obo/SO_0000602') : _namespace_SOFO('http://purl.obolibrary.org/obo/SO_0000655') , _namespace_SOFO('http://purl.obolibrary.org/obo/SO_0000603') : _namespace_SOFO('http://purl.obolibrary.org/obo/SO_0000588') , _namespace_SOFO('http://purl.obolibrary.org/obo/SO_0000605') : _namespace_SOFO('http://purl.obolibrary.org/obo/SO_0001411') , _namespace_SOFO('http://purl.obolibrary.org/obo/SO_0000611') : _namespace_SOFO('http://purl.obolibrary.org/obo/SO_0000841') , _namespace_SOFO('http://purl.obolibrary.org/obo/SO_0000612') : _namespace_SOFO('http://purl.obolibrary.org/obo/SO_0000841') , _namespace_SOFO('http://purl.obolibrary.org/obo/SO_0000616') : _namespace_SOFO('http://purl.obolibrary.org/obo/SO_0000835') , _namespace_SOFO('http://purl.obolibrary.org/obo/SO_0000624') : _namespace_SOFO('http://purl.obolibrary.org/obo/SO_0000628') , _namespace_SOFO('http://purl.obolibrary.org/obo/SO_0000625') : _namespace_SOFO('http://purl.obolibrary.org/obo/SO_0000727') , _namespace_SOFO('http://purl.obolibrary.org/obo/SO_0000627') : _namespace_SOFO('http://purl.obolibrary.org/obo/SO_0001055') , _namespace_SOFO('http://purl.obolibrary.org/obo/SO_0000628') : _namespace_SOFO('http://purl.obolibrary.org/obo/SO_0000830') , _namespace_SOFO('http://purl.obolibrary.org/obo/SO_0000643') : _namespace_SOFO('http://purl.obolibrary.org/obo/SO_0000005') , _namespace_SOFO('http://purl.obolibrary.org/obo/SO_0000645') : _namespace_SOFO('http://purl.obolibrary.org/obo/SO_0000185') , _namespace_SOFO('http://purl.obolibrary.org/obo/SO_0000646') : _namespace_SOFO('http://purl.obolibrary.org/obo/SO_0000655') , _namespace_SOFO('http://purl.obolibrary.org/obo/SO_0000649') : _namespace_SOFO('http://purl.obolibrary.org/obo/SO_0000655') , _namespace_SOFO('http://purl.obolibrary.org/obo/SO_0000650') : _namespace_SOFO('http://purl.obolibrary.org/obo/SO_0000252') , _namespace_SOFO('http://purl.obolibrary.org/obo/SO_0000652') : _namespace_SOFO('http://purl.obolibrary.org/obo/SO_0000651') , _namespace_SOFO('http://purl.obolibrary.org/obo/SO_0000653') : _namespace_SOFO('http://purl.obolibrary.org/obo/SO_0000651') , _namespace_SOFO('http://purl.obolibrary.org/obo/SO_0000655') : _namespace_SOFO('http://purl.obolibrary.org/obo/SO_0000233') , _namespace_SOFO('http://purl.obolibrary.org/obo/SO_0000658') : _namespace_SOFO('http://purl.obolibrary.org/obo/SO_0000657') , _namespace_SOFO('http://purl.obolibrary.org/obo/SO_0000662') : _namespace_SOFO('http://purl.obolibrary.org/obo/SO_0000188') , _namespace_SOFO('http://purl.obolibrary.org/obo/SO_0000667') : _namespace_SOFO('http://purl.obolibrary.org/obo/SO_0001411') , _namespace_SOFO('http://purl.obolibrary.org/obo/SO_0000668') : _namespace_SOFO('http://purl.obolibrary.org/obo/SO_0000102') , _namespace_SOFO('http://purl.obolibrary.org/obo/SO_0000673') : _namespace_SOFO('http://purl.obolibrary.org/obo/SO_0000831') , _namespace_SOFO('http://purl.obolibrary.org/obo/SO_0000684') : _namespace_SOFO('http://purl.obolibrary.org/obo/SO_0000059') , _namespace_SOFO('http://purl.obolibrary.org/obo/SO_0000687') : _namespace_SOFO('http://purl.obolibrary.org/obo/SO_0000699') , _namespace_SOFO('http://purl.obolibrary.org/obo/SO_0000688') : _namespace_SOFO('http://purl.obolibrary.org/obo/SO_0000353') , _namespace_SOFO('http://purl.obolibrary.org/obo/SO_0000689') : _namespace_SOFO('http://purl.obolibrary.org/obo/SO_0000102') , _namespace_SOFO('http://purl.obolibrary.org/obo/SO_0000694') : _namespace_SOFO('http://purl.obolibrary.org/obo/SO_0001483') , _namespace_SOFO('http://purl.obolibrary.org/obo/SO_0000695') : _namespace_SOFO('http://purl.obolibrary.org/obo/SO_0001409') , _namespace_SOFO('http://purl.obolibrary.org/obo/SO_0000696') : _namespace_SOFO('http://purl.obolibrary.org/obo/SO_0000695') , _namespace_SOFO('http://purl.obolibrary.org/obo/SO_0000699') : _namespace_SOFO('http://purl.obolibrary.org/obo/SO_0000110') , _namespace_SOFO('http://purl.obolibrary.org/obo/SO_0000700') : _namespace_SOFO('http://purl.obolibrary.org/obo/SO_0001410') , _namespace_SOFO('http://purl.obolibrary.org/obo/SO_0000701') : _namespace_SOFO('http://purl.obolibrary.org/obo/SO_0000413') , _namespace_SOFO('http://purl.obolibrary.org/obo/SO_0000702') : _namespace_SOFO('http://purl.obolibrary.org/obo/SO_0000413') , _namespace_SOFO('http://purl.obolibrary.org/obo/SO_0000703') : _namespace_SOFO('http://purl.obolibrary.org/obo/SO_0000700') , _namespace_SOFO('http://purl.obolibrary.org/obo/SO_0000705') : _namespace_SOFO('http://purl.obolibrary.org/obo/SO_0000657') , _namespace_SOFO('http://purl.obolibrary.org/obo/SO_0000706') : _namespace_SOFO('http://purl.obolibrary.org/obo/SO_0001420') , _namespace_SOFO('http://purl.obolibrary.org/obo/SO_0000714') : _namespace_SOFO('http://purl.obolibrary.org/obo/SO_0001683') , _namespace_SOFO('http://purl.obolibrary.org/obo/SO_0000715') : _namespace_SOFO('http://purl.obolibrary.org/obo/SO_0000714') , _namespace_SOFO('http://purl.obolibrary.org/obo/SO_0000717') : _namespace_SOFO('http://purl.obolibrary.org/obo/SO_0001410') , _namespace_SOFO('http://purl.obolibrary.org/obo/SO_0000719') : _namespace_SOFO('http://purl.obolibrary.org/obo/SO_0000353') , _namespace_SOFO('http://purl.obolibrary.org/obo/SO_0000724') : _namespace_SOFO('http://purl.obolibrary.org/obo/SO_0000296') , _namespace_SOFO('http://purl.obolibrary.org/obo/SO_0000725') : _namespace_SOFO('http://purl.obolibrary.org/obo/SO_0001527') , _namespace_SOFO('http://purl.obolibrary.org/obo/SO_0000777') : _namespace_SOFO('http://purl.obolibrary.org/obo/SO_0000462') , _namespace_SOFO('http://purl.obolibrary.org/obo/SO_0000778') : _namespace_SOFO('http://purl.obolibrary.org/obo/SO_0000462') , _namespace_SOFO('http://purl.obolibrary.org/obo/SO_0000834') : _namespace_SOFO('http://purl.obolibrary.org/obo/SO_0000833') , _namespace_SOFO('http://purl.obolibrary.org/obo/SO_0000837') : _namespace_SOFO('http://purl.obolibrary.org/obo/SO_0000836') , _namespace_SOFO('http://purl.obolibrary.org/obo/SO_0001000') : _namespace_SOFO('http://purl.obolibrary.org/obo/SO_0000650') , _namespace_SOFO('http://purl.obolibrary.org/obo/SO_0001001') : _namespace_SOFO('http://purl.obolibrary.org/obo/SO_0000651') , _namespace_SOFO('http://purl.obolibrary.org/obo/SO_0001002') : _namespace_SOFO('http://purl.obolibrary.org/obo/SO_0000651') , _namespace_SOFO('http://purl.obolibrary.org/obo/SO_0001019') : _namespace_SOFO('http://purl.obolibrary.org/obo/SO_0001059') , _namespace_SOFO('http://purl.obolibrary.org/obo/SO_0001037') : _namespace_SOFO('http://purl.obolibrary.org/obo/SO_0001411') , _namespace_SOFO('http://purl.obolibrary.org/obo/SO_0001039') : _namespace_SOFO('http://purl.obolibrary.org/obo/SO_0001037') , _namespace_SOFO('http://purl.obolibrary.org/obo/SO_0001055') : _namespace_SOFO('http://purl.obolibrary.org/obo/SO_0001679') , _namespace_SOFO('http://purl.obolibrary.org/obo/SO_0001056') : _namespace_SOFO('http://purl.obolibrary.org/obo/SO_0001679') , _namespace_SOFO('http://purl.obolibrary.org/obo/SO_0001059') : _namespace_SOFO('http://purl.obolibrary.org/obo/SO_0000110') , _namespace_SOFO('http://purl.obolibrary.org/obo/SO_0001063') : _namespace_SOFO('http://purl.obolibrary.org/obo/SO_0000839') , _namespace_SOFO('http://purl.obolibrary.org/obo/SO_0001214') : _namespace_SOFO('http://purl.obolibrary.org/obo/SO_0000852') , _namespace_SOFO('http://purl.obolibrary.org/obo/SO_0001215') : _namespace_SOFO('http://purl.obolibrary.org/obo/SO_0000852') , _namespace_SOFO('http://purl.obolibrary.org/obo/SO_0001235') : _namespace_SOFO('http://purl.obolibrary.org/obo/SO_0001411') , _namespace_SOFO('http://purl.obolibrary.org/obo/SO_0001236') : _namespace_SOFO('http://purl.obolibrary.org/obo/SO_0001411') , _namespace_SOFO('http://purl.obolibrary.org/obo/SO_0001248') : _namespace_SOFO('http://purl.obolibrary.org/obo/SO_0001410') , _namespace_SOFO('http://purl.obolibrary.org/obo/SO_0001409') : _namespace_SOFO('http://purl.obolibrary.org/obo/SO_0000001') , _namespace_SOFO('http://purl.obolibrary.org/obo/SO_0001410') : _namespace_SOFO('http://purl.obolibrary.org/obo/SO_0000001') , _namespace_SOFO('http://purl.obolibrary.org/obo/SO_0001411') : _namespace_SOFO('http://purl.obolibrary.org/obo/SO_0000001') , _namespace_SOFO('http://purl.obolibrary.org/obo/SO_0001412') : _namespace_SOFO('http://purl.obolibrary.org/obo/SO_0000001') , _namespace_SOFO('http://purl.obolibrary.org/obo/SO_0001419') : _namespace_SOFO('http://purl.obolibrary.org/obo/SO_0000162') , _namespace_SOFO('http://purl.obolibrary.org/obo/SO_0001420') : _namespace_SOFO('http://purl.obolibrary.org/obo/SO_0000162') , _namespace_SOFO('http://purl.obolibrary.org/obo/SO_0001483') : _namespace_SOFO('http://purl.obolibrary.org/obo/SO_1000002') , _namespace_SOFO('http://purl.obolibrary.org/obo/SO_0001527') : _namespace_SOFO('http://purl.obolibrary.org/obo/SO_0000839') , _namespace_SOFO('http://purl.obolibrary.org/obo/SO_0001647') : _namespace_SOFO('http://purl.obolibrary.org/obo/SO_0000139') , _namespace_SOFO('http://purl.obolibrary.org/obo/SO_0001654') : _namespace_SOFO('http://purl.obolibrary.org/obo/SO_0000410') , _namespace_SOFO('http://purl.obolibrary.org/obo/SO_0001679') : _namespace_SOFO('http://purl.obolibrary.org/obo/SO_0005836') , _namespace_SOFO('http://purl.obolibrary.org/obo/SO_0001683') : _namespace_SOFO('http://purl.obolibrary.org/obo/SO_0001411') , _namespace_SOFO('http://purl.obolibrary.org/obo/SO_0001720') : _namespace_SOFO('http://purl.obolibrary.org/obo/SO_0001411') , _namespace_SOFO('http://purl.obolibrary.org/obo/SO_0001790') : _namespace_SOFO('http://purl.obolibrary.org/obo/SO_0000143') , _namespace_SOFO('http://purl.obolibrary.org/obo/SO_0005836') : _namespace_SOFO('http://purl.obolibrary.org/obo/SO_0000831') , _namespace_SOFO('http://purl.obolibrary.org/obo/SO_0005855') : _namespace_SOFO('http://purl.obolibrary.org/obo/SO_0001411') , _namespace_SOFO('http://purl.obolibrary.org/obo/SO_1000002') : _namespace_SOFO('http://purl.obolibrary.org/obo/SO_0001411') , _namespace_SOFO('http://purl.obolibrary.org/obo/SO_1000005') : _namespace_SOFO('http://purl.obolibrary.org/obo/SO_1000002') , _namespace_SOFO('http://purl.obolibrary.org/obo/SO_1000008') : _namespace_SOFO('http://purl.obolibrary.org/obo/SO_0001483') , _namespace_SOFO('http://purl.obolibrary.org/obo/SO_1000036') : _namespace_SOFO('http://purl.obolibrary.org/obo/SO_0001411') , _namespace_SOFO('http://purl.obolibrary.org/obo/SO_1001284') : _namespace_SOFO('http://purl.obolibrary.org/obo/SO_0005855') , _namespace_SOFO('http://purl.obolibrary.org/obo/SO_2000061') : _namespace_SOFO('http://purl.obolibrary.org/obo/SO_0000695') }
|
2421
|
+
__parent_properties = { _namespace_SOFA('http://purl.obolibrary.org/obo/http_//purl.org/obo/owl:complete_evidence_for_feature') : _namespace_SOFA('http://purl.obolibrary.org/obo/http_//purl.org/obo/owl:evidence_for_feature') , _namespace_SOFA('http://purl.obolibrary.org/obo/http_//purl.org/obo/owl:has_integral_part') : _namespace_SOFA('http://purl.obolibrary.org/obo/http_//purl.org/obo/owl:has_part') , _namespace_SOFA('http://purl.obolibrary.org/obo/http_//purl.org/obo/owl:homologous_to') : _namespace_SOFA('http://purl.obolibrary.org/obo/http_//purl.org/obo/owl:similar_to') , _namespace_SOFA('http://purl.obolibrary.org/obo/http_//purl.org/obo/owl:integral_part_of') : _namespace_SOFA('http://purl.obolibrary.org/obo/http_//purl.org/obo/owl:part_of') , _namespace_SOFA('http://purl.obolibrary.org/obo/http_//purl.org/obo/owl:member_of') : _namespace_SOFA('http://purl.obolibrary.org/obo/http_//purl.org/obo/owl:part_of') , _namespace_SOFA('http://purl.obolibrary.org/obo/http_//purl.org/obo/owl:non_functional_homolog_of') : _namespace_SOFA('http://purl.obolibrary.org/obo/http_//purl.org/obo/owl:homologous_to') , _namespace_SOFA('http://purl.obolibrary.org/obo/http_//purl.org/obo/owl:orthologous_to') : _namespace_SOFA('http://purl.obolibrary.org/obo/http_//purl.org/obo/owl:homologous_to') , _namespace_SOFA('http://purl.obolibrary.org/obo/http_//purl.org/obo/owl:paralogous_to') : _namespace_SOFA('http://purl.obolibrary.org/obo/http_//purl.org/obo/owl:homologous_to') , _namespace_SOFA('http://purl.obolibrary.org/obo/http_//purl.org/obo/owl:partial_evidence_for_feature') : _namespace_SOFA('http://purl.obolibrary.org/obo/http_//purl.org/obo/owl:evidence_for_feature') , _namespace_SOFA('http://purl.obolibrary.org/obo/SO_0000001') : _namespace_SOFA('http://purl.obolibrary.org/obo/SO_0000110') , _namespace_SOFA('http://purl.obolibrary.org/obo/SO_0000004') : _namespace_SOFA('http://purl.obolibrary.org/obo/SO_0000195') , _namespace_SOFA('http://purl.obolibrary.org/obo/SO_0000005') : _namespace_SOFA('http://purl.obolibrary.org/obo/SO_0000705') , _namespace_SOFA('http://purl.obolibrary.org/obo/SO_0000006') : _namespace_SOFA('http://purl.obolibrary.org/obo/SO_0000695') , _namespace_SOFA('http://purl.obolibrary.org/obo/SO_0000057') : _namespace_SOFA('http://purl.obolibrary.org/obo/SO_0000752') , _namespace_SOFA('http://purl.obolibrary.org/obo/SO_0000059') : _namespace_SOFA('http://purl.obolibrary.org/obo/SO_0001654') , _namespace_SOFA('http://purl.obolibrary.org/obo/SO_0000101') : _namespace_SOFA('http://purl.obolibrary.org/obo/SO_0001039') , _namespace_SOFA('http://purl.obolibrary.org/obo/SO_0000102') : _namespace_SOFA('http://purl.obolibrary.org/obo/SO_0000347') , _namespace_SOFA('http://purl.obolibrary.org/obo/SO_0000112') : _namespace_SOFA('http://purl.obolibrary.org/obo/SO_0000441') , _namespace_SOFA('http://purl.obolibrary.org/obo/SO_0000113') : _namespace_SOFA('http://purl.obolibrary.org/obo/SO_0001039') , _namespace_SOFA('http://purl.obolibrary.org/obo/SO_0000114') : _namespace_SOFA('http://purl.obolibrary.org/obo/SO_0000306') , _namespace_SOFA('http://purl.obolibrary.org/obo/SO_0000120') : _namespace_SOFA('http://purl.obolibrary.org/obo/SO_0000185') , _namespace_SOFA('http://purl.obolibrary.org/obo/SO_0000139') : _namespace_SOFA('http://purl.obolibrary.org/obo/SO_0000836') , _namespace_SOFA('http://purl.obolibrary.org/obo/SO_0000143') : _namespace_SOFA('http://purl.obolibrary.org/obo/SO_0001410') , _namespace_SOFA('http://purl.obolibrary.org/obo/SO_0000147') : _namespace_SOFA('http://purl.obolibrary.org/obo/SO_0000833') , _namespace_SOFA('http://purl.obolibrary.org/obo/SO_0000151') : _namespace_SOFA('http://purl.obolibrary.org/obo/SO_0000695') , _namespace_SOFA('http://purl.obolibrary.org/obo/SO_0000159') : _namespace_SOFA('http://purl.obolibrary.org/obo/SO_0001411') , _namespace_SOFA('http://purl.obolibrary.org/obo/SO_0000161') : _namespace_SOFA('http://purl.obolibrary.org/obo/SO_0000306') , _namespace_SOFA('http://purl.obolibrary.org/obo/SO_0000162') : _namespace_SOFA('http://purl.obolibrary.org/obo/SO_0000835') , _namespace_SOFA('http://purl.obolibrary.org/obo/SO_0000163') : _namespace_SOFA('http://purl.obolibrary.org/obo/SO_0001419') , _namespace_SOFA('http://purl.obolibrary.org/obo/SO_0000164') : _namespace_SOFA('http://purl.obolibrary.org/obo/SO_0001419') , _namespace_SOFA('http://purl.obolibrary.org/obo/SO_0000165') : _namespace_SOFA('http://purl.obolibrary.org/obo/SO_0000727') , _namespace_SOFA('http://purl.obolibrary.org/obo/SO_0000167') : _namespace_SOFA('http://purl.obolibrary.org/obo/SO_0001055') , _namespace_SOFA('http://purl.obolibrary.org/obo/SO_0000177') : _namespace_SOFA('http://purl.obolibrary.org/obo/SO_0000347') , _namespace_SOFA('http://purl.obolibrary.org/obo/SO_0000178') : _namespace_SOFA('http://purl.obolibrary.org/obo/SO_0005855') , _namespace_SOFA('http://purl.obolibrary.org/obo/SO_0000181') : _namespace_SOFA('http://purl.obolibrary.org/obo/SO_0000347') , _namespace_SOFA('http://purl.obolibrary.org/obo/SO_0000183') : _namespace_SOFA('http://purl.obolibrary.org/obo/SO_0000842') , _namespace_SOFA('http://purl.obolibrary.org/obo/SO_0000185') : _namespace_SOFA('http://purl.obolibrary.org/obo/SO_0000673') , _namespace_SOFA('http://purl.obolibrary.org/obo/SO_0000188') : _namespace_SOFA('http://purl.obolibrary.org/obo/SO_0000835') , _namespace_SOFA('http://purl.obolibrary.org/obo/SO_0000193') : _namespace_SOFA('http://purl.obolibrary.org/obo/SO_0000412') , _namespace_SOFA('http://purl.obolibrary.org/obo/SO_0000195') : _namespace_SOFA('http://purl.obolibrary.org/obo/SO_0000147') , _namespace_SOFA('http://purl.obolibrary.org/obo/SO_0000198') : _namespace_SOFA('http://purl.obolibrary.org/obo/SO_0000147') , _namespace_SOFA('http://purl.obolibrary.org/obo/SO_0000200') : _namespace_SOFA('http://purl.obolibrary.org/obo/SO_0000195') , _namespace_SOFA('http://purl.obolibrary.org/obo/SO_0000203') : _namespace_SOFA('http://purl.obolibrary.org/obo/SO_0000836') , _namespace_SOFA('http://purl.obolibrary.org/obo/SO_0000204') : _namespace_SOFA('http://purl.obolibrary.org/obo/SO_0000203') , _namespace_SOFA('http://purl.obolibrary.org/obo/SO_0000205') : _namespace_SOFA('http://purl.obolibrary.org/obo/SO_0000203') , _namespace_SOFA('http://purl.obolibrary.org/obo/SO_0000209') : _namespace_SOFA('http://purl.obolibrary.org/obo/SO_0000483') , _namespace_SOFA('http://purl.obolibrary.org/obo/SO_0000234') : _namespace_SOFA('http://purl.obolibrary.org/obo/SO_0000233') , _namespace_SOFA('http://purl.obolibrary.org/obo/SO_0000235') : _namespace_SOFA('http://purl.obolibrary.org/obo/SO_0001679') , _namespace_SOFA('http://purl.obolibrary.org/obo/SO_0000236') : _namespace_SOFA('http://purl.obolibrary.org/obo/SO_0000717') , _namespace_SOFA('http://purl.obolibrary.org/obo/SO_0000239') : _namespace_SOFA('http://purl.obolibrary.org/obo/SO_0001412') , _namespace_SOFA('http://purl.obolibrary.org/obo/SO_0000289') : _namespace_SOFA('http://purl.obolibrary.org/obo/SO_0000005') , _namespace_SOFA('http://purl.obolibrary.org/obo/SO_0000294') : _namespace_SOFA('http://purl.obolibrary.org/obo/SO_0000657') , _namespace_SOFA('http://purl.obolibrary.org/obo/SO_0000303') : _namespace_SOFA('http://purl.obolibrary.org/obo/SO_0000835') , _namespace_SOFA('http://purl.obolibrary.org/obo/SO_0000305') : _namespace_SOFA('http://purl.obolibrary.org/obo/SO_0001720') , _namespace_SOFA('http://purl.obolibrary.org/obo/SO_0000306') : _namespace_SOFA('http://purl.obolibrary.org/obo/SO_0000305') , _namespace_SOFA('http://purl.obolibrary.org/obo/SO_0000307') : _namespace_SOFA('http://purl.obolibrary.org/obo/SO_0001411') , _namespace_SOFA('http://purl.obolibrary.org/obo/SO_0000314') : _namespace_SOFA('http://purl.obolibrary.org/obo/SO_0000657') , _namespace_SOFA('http://purl.obolibrary.org/obo/SO_0000315') : _namespace_SOFA('http://purl.obolibrary.org/obo/SO_0000835') , _namespace_SOFA('http://purl.obolibrary.org/obo/SO_0000316') : _namespace_SOFA('http://purl.obolibrary.org/obo/SO_0000836') , _namespace_SOFA('http://purl.obolibrary.org/obo/SO_0000318') : _namespace_SOFA('http://purl.obolibrary.org/obo/SO_0000360') , _namespace_SOFA('http://purl.obolibrary.org/obo/SO_0000319') : _namespace_SOFA('http://purl.obolibrary.org/obo/SO_0000360') , _namespace_SOFA('http://purl.obolibrary.org/obo/SO_0000324') : _namespace_SOFA('http://purl.obolibrary.org/obo/SO_0000696') , _namespace_SOFA('http://purl.obolibrary.org/obo/SO_0000325') : _namespace_SOFA('http://purl.obolibrary.org/obo/SO_0000209') , _namespace_SOFA('http://purl.obolibrary.org/obo/SO_0000326') : _namespace_SOFA('http://purl.obolibrary.org/obo/SO_0000324') , _namespace_SOFA('http://purl.obolibrary.org/obo/SO_0000330') : _namespace_SOFA('http://purl.obolibrary.org/obo/SO_0001410') , _namespace_SOFA('http://purl.obolibrary.org/obo/SO_0000331') : _namespace_SOFA('http://purl.obolibrary.org/obo/SO_0000324') , _namespace_SOFA('http://purl.obolibrary.org/obo/SO_0000332') : _namespace_SOFA('http://purl.obolibrary.org/obo/SO_0000330') , _namespace_SOFA('http://purl.obolibrary.org/obo/SO_0000334') : _namespace_SOFA('http://purl.obolibrary.org/obo/SO_0000330') , _namespace_SOFA('http://purl.obolibrary.org/obo/SO_0000337') : _namespace_SOFA('http://purl.obolibrary.org/obo/SO_0000442') , _namespace_SOFA('http://purl.obolibrary.org/obo/SO_0000340') : _namespace_SOFA('http://purl.obolibrary.org/obo/SO_0001235') , _namespace_SOFA('http://purl.obolibrary.org/obo/SO_0000341') : _namespace_SOFA('http://purl.obolibrary.org/obo/SO_0000830') , _namespace_SOFA('http://purl.obolibrary.org/obo/SO_0000343') : _namespace_SOFA('http://purl.obolibrary.org/obo/SO_0001410') , _namespace_SOFA('http://purl.obolibrary.org/obo/SO_0000344') : _namespace_SOFA('http://purl.obolibrary.org/obo/SO_0001056') , _namespace_SOFA('http://purl.obolibrary.org/obo/SO_0000347') : _namespace_SOFA('http://purl.obolibrary.org/obo/SO_0000343') , _namespace_SOFA('http://purl.obolibrary.org/obo/SO_0000349') : _namespace_SOFA('http://purl.obolibrary.org/obo/SO_0000343') , _namespace_SOFA('http://purl.obolibrary.org/obo/SO_0000353') : _namespace_SOFA('http://purl.obolibrary.org/obo/SO_0001248') , _namespace_SOFA('http://purl.obolibrary.org/obo/SO_0000360') : _namespace_SOFA('http://purl.obolibrary.org/obo/SO_0000851') , _namespace_SOFA('http://purl.obolibrary.org/obo/SO_0000366') : _namespace_SOFA('http://purl.obolibrary.org/obo/SO_0000699') , _namespace_SOFA('http://purl.obolibrary.org/obo/SO_0000368') : _namespace_SOFA('http://purl.obolibrary.org/obo/SO_0000366') , _namespace_SOFA('http://purl.obolibrary.org/obo/SO_0000370') : _namespace_SOFA('http://purl.obolibrary.org/obo/SO_0000655') , _namespace_SOFA('http://purl.obolibrary.org/obo/SO_0000372') : _namespace_SOFA('http://purl.obolibrary.org/obo/SO_0000673') , _namespace_SOFA('http://purl.obolibrary.org/obo/SO_0000374') : _namespace_SOFA('http://purl.obolibrary.org/obo/SO_0000372') , _namespace_SOFA('http://purl.obolibrary.org/obo/SO_0000375') : _namespace_SOFA('http://purl.obolibrary.org/obo/SO_0000651') , _namespace_SOFA('http://purl.obolibrary.org/obo/SO_0000380') : _namespace_SOFA('http://purl.obolibrary.org/obo/SO_0000715') , _namespace_SOFA('http://purl.obolibrary.org/obo/SO_0000385') : _namespace_SOFA('http://purl.obolibrary.org/obo/SO_0000655') , _namespace_SOFA('http://purl.obolibrary.org/obo/SO_0000386') : _namespace_SOFA('http://purl.obolibrary.org/obo/SO_0000655') , _namespace_SOFA('http://purl.obolibrary.org/obo/SO_0000390') : _namespace_SOFA('http://purl.obolibrary.org/obo/SO_0000655') , _namespace_SOFA('http://purl.obolibrary.org/obo/SO_0000391') : _namespace_SOFA('http://purl.obolibrary.org/obo/SO_0000274') , _namespace_SOFA('http://purl.obolibrary.org/obo/SO_0000392') : _namespace_SOFA('http://purl.obolibrary.org/obo/SO_0000274') , _namespace_SOFA('http://purl.obolibrary.org/obo/SO_0000393') : _namespace_SOFA('http://purl.obolibrary.org/obo/SO_0000274') , _namespace_SOFA('http://purl.obolibrary.org/obo/SO_0000394') : _namespace_SOFA('http://purl.obolibrary.org/obo/SO_0000274') , _namespace_SOFA('http://purl.obolibrary.org/obo/SO_0000395') : _namespace_SOFA('http://purl.obolibrary.org/obo/SO_0000274') , _namespace_SOFA('http://purl.obolibrary.org/obo/SO_0000396') : _namespace_SOFA('http://purl.obolibrary.org/obo/SO_0000274') , _namespace_SOFA('http://purl.obolibrary.org/obo/SO_0000397') : _namespace_SOFA('http://purl.obolibrary.org/obo/SO_0000274') , _namespace_SOFA('http://purl.obolibrary.org/obo/SO_0000398') : _namespace_SOFA('http://purl.obolibrary.org/obo/SO_0000274') , _namespace_SOFA('http://purl.obolibrary.org/obo/SO_0000399') : _namespace_SOFA('http://purl.obolibrary.org/obo/SO_0000274') , _namespace_SOFA('http://purl.obolibrary.org/obo/SO_0000403') : _namespace_SOFA('http://purl.obolibrary.org/obo/SO_0000593') , _namespace_SOFA('http://purl.obolibrary.org/obo/SO_0000404') : _namespace_SOFA('http://purl.obolibrary.org/obo/SO_0000655') , _namespace_SOFA('http://purl.obolibrary.org/obo/SO_0000405') : _namespace_SOFA('http://purl.obolibrary.org/obo/SO_0000655') , _namespace_SOFA('http://purl.obolibrary.org/obo/SO_0000407') : _namespace_SOFA('http://purl.obolibrary.org/obo/SO_0000650') , _namespace_SOFA('http://purl.obolibrary.org/obo/SO_0000409') : _namespace_SOFA('http://purl.obolibrary.org/obo/SO_0001411') , _namespace_SOFA('http://purl.obolibrary.org/obo/SO_0000410') : _namespace_SOFA('http://purl.obolibrary.org/obo/SO_0000409') , _namespace_SOFA('http://purl.obolibrary.org/obo/SO_0000412') : _namespace_SOFA('http://purl.obolibrary.org/obo/SO_0000143') , _namespace_SOFA('http://purl.obolibrary.org/obo/SO_0000413') : _namespace_SOFA('http://purl.obolibrary.org/obo/SO_0000700') , _namespace_SOFA('http://purl.obolibrary.org/obo/SO_0000436') : _namespace_SOFA('http://purl.obolibrary.org/obo/SO_0000296') , _namespace_SOFA('http://purl.obolibrary.org/obo/SO_0000441') : _namespace_SOFA('http://purl.obolibrary.org/obo/SO_0000696') , _namespace_SOFA('http://purl.obolibrary.org/obo/SO_0000442') : _namespace_SOFA('http://purl.obolibrary.org/obo/SO_0000696') , _namespace_SOFA('http://purl.obolibrary.org/obo/SO_0000454') : _namespace_SOFA('http://purl.obolibrary.org/obo/SO_0000655') , _namespace_SOFA('http://purl.obolibrary.org/obo/SO_0000462') : _namespace_SOFA('http://purl.obolibrary.org/obo/SO_0001411') , _namespace_SOFA('http://purl.obolibrary.org/obo/SO_0000472') : _namespace_SOFA('http://purl.obolibrary.org/obo/SO_0000353') , _namespace_SOFA('http://purl.obolibrary.org/obo/SO_0000483') : _namespace_SOFA('http://purl.obolibrary.org/obo/SO_0000185') , _namespace_SOFA('http://purl.obolibrary.org/obo/SO_0000499') : _namespace_SOFA('http://purl.obolibrary.org/obo/SO_0000353') , _namespace_SOFA('http://purl.obolibrary.org/obo/SO_0000551') : _namespace_SOFA('http://purl.obolibrary.org/obo/SO_0001679') , _namespace_SOFA('http://purl.obolibrary.org/obo/SO_0000577') : _namespace_SOFA('http://purl.obolibrary.org/obo/SO_0000628') , _namespace_SOFA('http://purl.obolibrary.org/obo/SO_0000581') : _namespace_SOFA('http://purl.obolibrary.org/obo/SO_0001411') , _namespace_SOFA('http://purl.obolibrary.org/obo/SO_0000587') : _namespace_SOFA('http://purl.obolibrary.org/obo/SO_0000588') , _namespace_SOFA('http://purl.obolibrary.org/obo/SO_0000588') : _namespace_SOFA('http://purl.obolibrary.org/obo/SO_0000188') , _namespace_SOFA('http://purl.obolibrary.org/obo/SO_0000593') : _namespace_SOFA('http://purl.obolibrary.org/obo/SO_0000275') , _namespace_SOFA('http://purl.obolibrary.org/obo/SO_0000602') : _namespace_SOFA('http://purl.obolibrary.org/obo/SO_0000655') , _namespace_SOFA('http://purl.obolibrary.org/obo/SO_0000603') : _namespace_SOFA('http://purl.obolibrary.org/obo/SO_0000588') , _namespace_SOFA('http://purl.obolibrary.org/obo/SO_0000605') : _namespace_SOFA('http://purl.obolibrary.org/obo/SO_0001411') , _namespace_SOFA('http://purl.obolibrary.org/obo/SO_0000611') : _namespace_SOFA('http://purl.obolibrary.org/obo/SO_0000841') , _namespace_SOFA('http://purl.obolibrary.org/obo/SO_0000612') : _namespace_SOFA('http://purl.obolibrary.org/obo/SO_0000841') , _namespace_SOFA('http://purl.obolibrary.org/obo/SO_0000616') : _namespace_SOFA('http://purl.obolibrary.org/obo/SO_0000835') , _namespace_SOFA('http://purl.obolibrary.org/obo/SO_0000624') : _namespace_SOFA('http://purl.obolibrary.org/obo/SO_0000628') , _namespace_SOFA('http://purl.obolibrary.org/obo/SO_0000625') : _namespace_SOFA('http://purl.obolibrary.org/obo/SO_0000727') , _namespace_SOFA('http://purl.obolibrary.org/obo/SO_0000627') : _namespace_SOFA('http://purl.obolibrary.org/obo/SO_0001055') , _namespace_SOFA('http://purl.obolibrary.org/obo/SO_0000628') : _namespace_SOFA('http://purl.obolibrary.org/obo/SO_0000830') , _namespace_SOFA('http://purl.obolibrary.org/obo/SO_0000643') : _namespace_SOFA('http://purl.obolibrary.org/obo/SO_0000005') , _namespace_SOFA('http://purl.obolibrary.org/obo/SO_0000645') : _namespace_SOFA('http://purl.obolibrary.org/obo/SO_0000185') , _namespace_SOFA('http://purl.obolibrary.org/obo/SO_0000646') : _namespace_SOFA('http://purl.obolibrary.org/obo/SO_0000655') , _namespace_SOFA('http://purl.obolibrary.org/obo/SO_0000649') : _namespace_SOFA('http://purl.obolibrary.org/obo/SO_0000655') , _namespace_SOFA('http://purl.obolibrary.org/obo/SO_0000650') : _namespace_SOFA('http://purl.obolibrary.org/obo/SO_0000252') , _namespace_SOFA('http://purl.obolibrary.org/obo/SO_0000652') : _namespace_SOFA('http://purl.obolibrary.org/obo/SO_0000651') , _namespace_SOFA('http://purl.obolibrary.org/obo/SO_0000653') : _namespace_SOFA('http://purl.obolibrary.org/obo/SO_0000651') , _namespace_SOFA('http://purl.obolibrary.org/obo/SO_0000655') : _namespace_SOFA('http://purl.obolibrary.org/obo/SO_0000233') , _namespace_SOFA('http://purl.obolibrary.org/obo/SO_0000658') : _namespace_SOFA('http://purl.obolibrary.org/obo/SO_0000657') , _namespace_SOFA('http://purl.obolibrary.org/obo/SO_0000662') : _namespace_SOFA('http://purl.obolibrary.org/obo/SO_0000188') , _namespace_SOFA('http://purl.obolibrary.org/obo/SO_0000667') : _namespace_SOFA('http://purl.obolibrary.org/obo/SO_0001411') , _namespace_SOFA('http://purl.obolibrary.org/obo/SO_0000668') : _namespace_SOFA('http://purl.obolibrary.org/obo/SO_0000102') , _namespace_SOFA('http://purl.obolibrary.org/obo/SO_0000673') : _namespace_SOFA('http://purl.obolibrary.org/obo/SO_0000831') , _namespace_SOFA('http://purl.obolibrary.org/obo/SO_0000684') : _namespace_SOFA('http://purl.obolibrary.org/obo/SO_0000059') , _namespace_SOFA('http://purl.obolibrary.org/obo/SO_0000687') : _namespace_SOFA('http://purl.obolibrary.org/obo/SO_0000699') , _namespace_SOFA('http://purl.obolibrary.org/obo/SO_0000688') : _namespace_SOFA('http://purl.obolibrary.org/obo/SO_0000353') , _namespace_SOFA('http://purl.obolibrary.org/obo/SO_0000689') : _namespace_SOFA('http://purl.obolibrary.org/obo/SO_0000102') , _namespace_SOFA('http://purl.obolibrary.org/obo/SO_0000694') : _namespace_SOFA('http://purl.obolibrary.org/obo/SO_0001483') , _namespace_SOFA('http://purl.obolibrary.org/obo/SO_0000695') : _namespace_SOFA('http://purl.obolibrary.org/obo/SO_0001409') , _namespace_SOFA('http://purl.obolibrary.org/obo/SO_0000696') : _namespace_SOFA('http://purl.obolibrary.org/obo/SO_0000695') , _namespace_SOFA('http://purl.obolibrary.org/obo/SO_0000699') : _namespace_SOFA('http://purl.obolibrary.org/obo/SO_0000110') , _namespace_SOFA('http://purl.obolibrary.org/obo/SO_0000700') : _namespace_SOFA('http://purl.obolibrary.org/obo/SO_0001410') , _namespace_SOFA('http://purl.obolibrary.org/obo/SO_0000701') : _namespace_SOFA('http://purl.obolibrary.org/obo/SO_0000413') , _namespace_SOFA('http://purl.obolibrary.org/obo/SO_0000702') : _namespace_SOFA('http://purl.obolibrary.org/obo/SO_0000413') , _namespace_SOFA('http://purl.obolibrary.org/obo/SO_0000703') : _namespace_SOFA('http://purl.obolibrary.org/obo/SO_0000700') , _namespace_SOFA('http://purl.obolibrary.org/obo/SO_0000705') : _namespace_SOFA('http://purl.obolibrary.org/obo/SO_0000657') , _namespace_SOFA('http://purl.obolibrary.org/obo/SO_0000706') : _namespace_SOFA('http://purl.obolibrary.org/obo/SO_0001420') , _namespace_SOFA('http://purl.obolibrary.org/obo/SO_0000714') : _namespace_SOFA('http://purl.obolibrary.org/obo/SO_0001683') , _namespace_SOFA('http://purl.obolibrary.org/obo/SO_0000715') : _namespace_SOFA('http://purl.obolibrary.org/obo/SO_0000714') , _namespace_SOFA('http://purl.obolibrary.org/obo/SO_0000717') : _namespace_SOFA('http://purl.obolibrary.org/obo/SO_0001410') , _namespace_SOFA('http://purl.obolibrary.org/obo/SO_0000719') : _namespace_SOFA('http://purl.obolibrary.org/obo/SO_0000353') , _namespace_SOFA('http://purl.obolibrary.org/obo/SO_0000724') : _namespace_SOFA('http://purl.obolibrary.org/obo/SO_0000296') , _namespace_SOFA('http://purl.obolibrary.org/obo/SO_0000725') : _namespace_SOFA('http://purl.obolibrary.org/obo/SO_0001527') , _namespace_SOFA('http://purl.obolibrary.org/obo/SO_0000777') : _namespace_SOFA('http://purl.obolibrary.org/obo/SO_0000462') , _namespace_SOFA('http://purl.obolibrary.org/obo/SO_0000778') : _namespace_SOFA('http://purl.obolibrary.org/obo/SO_0000462') , _namespace_SOFA('http://purl.obolibrary.org/obo/SO_0000834') : _namespace_SOFA('http://purl.obolibrary.org/obo/SO_0000833') , _namespace_SOFA('http://purl.obolibrary.org/obo/SO_0000837') : _namespace_SOFA('http://purl.obolibrary.org/obo/SO_0000836') , _namespace_SOFA('http://purl.obolibrary.org/obo/SO_0001000') : _namespace_SOFA('http://purl.obolibrary.org/obo/SO_0000650') , _namespace_SOFA('http://purl.obolibrary.org/obo/SO_0001001') : _namespace_SOFA('http://purl.obolibrary.org/obo/SO_0000651') , _namespace_SOFA('http://purl.obolibrary.org/obo/SO_0001002') : _namespace_SOFA('http://purl.obolibrary.org/obo/SO_0000651') , _namespace_SOFA('http://purl.obolibrary.org/obo/SO_0001019') : _namespace_SOFA('http://purl.obolibrary.org/obo/SO_0001059') , _namespace_SOFA('http://purl.obolibrary.org/obo/SO_0001037') : _namespace_SOFA('http://purl.obolibrary.org/obo/SO_0001411') , _namespace_SOFA('http://purl.obolibrary.org/obo/SO_0001039') : _namespace_SOFA('http://purl.obolibrary.org/obo/SO_0001037') , _namespace_SOFA('http://purl.obolibrary.org/obo/SO_0001055') : _namespace_SOFA('http://purl.obolibrary.org/obo/SO_0001679') , _namespace_SOFA('http://purl.obolibrary.org/obo/SO_0001056') : _namespace_SOFA('http://purl.obolibrary.org/obo/SO_0001679') , _namespace_SOFA('http://purl.obolibrary.org/obo/SO_0001059') : _namespace_SOFA('http://purl.obolibrary.org/obo/SO_0000110') , _namespace_SOFA('http://purl.obolibrary.org/obo/SO_0001063') : _namespace_SOFA('http://purl.obolibrary.org/obo/SO_0000839') , _namespace_SOFA('http://purl.obolibrary.org/obo/SO_0001214') : _namespace_SOFA('http://purl.obolibrary.org/obo/SO_0000852') , _namespace_SOFA('http://purl.obolibrary.org/obo/SO_0001215') : _namespace_SOFA('http://purl.obolibrary.org/obo/SO_0000852') , _namespace_SOFA('http://purl.obolibrary.org/obo/SO_0001235') : _namespace_SOFA('http://purl.obolibrary.org/obo/SO_0001411') , _namespace_SOFA('http://purl.obolibrary.org/obo/SO_0001236') : _namespace_SOFA('http://purl.obolibrary.org/obo/SO_0001411') , _namespace_SOFA('http://purl.obolibrary.org/obo/SO_0001248') : _namespace_SOFA('http://purl.obolibrary.org/obo/SO_0001410') , _namespace_SOFA('http://purl.obolibrary.org/obo/SO_0001409') : _namespace_SOFA('http://purl.obolibrary.org/obo/SO_0000001') , _namespace_SOFA('http://purl.obolibrary.org/obo/SO_0001410') : _namespace_SOFA('http://purl.obolibrary.org/obo/SO_0000001') , _namespace_SOFA('http://purl.obolibrary.org/obo/SO_0001411') : _namespace_SOFA('http://purl.obolibrary.org/obo/SO_0000001') , _namespace_SOFA('http://purl.obolibrary.org/obo/SO_0001412') : _namespace_SOFA('http://purl.obolibrary.org/obo/SO_0000001') , _namespace_SOFA('http://purl.obolibrary.org/obo/SO_0001419') : _namespace_SOFA('http://purl.obolibrary.org/obo/SO_0000162') , _namespace_SOFA('http://purl.obolibrary.org/obo/SO_0001420') : _namespace_SOFA('http://purl.obolibrary.org/obo/SO_0000162') , _namespace_SOFA('http://purl.obolibrary.org/obo/SO_0001483') : _namespace_SOFA('http://purl.obolibrary.org/obo/SO_1000002') , _namespace_SOFA('http://purl.obolibrary.org/obo/SO_0001527') : _namespace_SOFA('http://purl.obolibrary.org/obo/SO_0000839') , _namespace_SOFA('http://purl.obolibrary.org/obo/SO_0001647') : _namespace_SOFA('http://purl.obolibrary.org/obo/SO_0000139') , _namespace_SOFA('http://purl.obolibrary.org/obo/SO_0001654') : _namespace_SOFA('http://purl.obolibrary.org/obo/SO_0000410') , _namespace_SOFA('http://purl.obolibrary.org/obo/SO_0001679') : _namespace_SOFA('http://purl.obolibrary.org/obo/SO_0005836') , _namespace_SOFA('http://purl.obolibrary.org/obo/SO_0001683') : _namespace_SOFA('http://purl.obolibrary.org/obo/SO_0001411') , _namespace_SOFA('http://purl.obolibrary.org/obo/SO_0001720') : _namespace_SOFA('http://purl.obolibrary.org/obo/SO_0001411') , _namespace_SOFA('http://purl.obolibrary.org/obo/SO_0001790') : _namespace_SOFA('http://purl.obolibrary.org/obo/SO_0000143') , _namespace_SOFA('http://purl.obolibrary.org/obo/SO_0005836') : _namespace_SOFA('http://purl.obolibrary.org/obo/SO_0000831') , _namespace_SOFA('http://purl.obolibrary.org/obo/SO_0005855') : _namespace_SOFA('http://purl.obolibrary.org/obo/SO_0001411') , _namespace_SOFA('http://purl.obolibrary.org/obo/SO_1000002') : _namespace_SOFA('http://purl.obolibrary.org/obo/SO_0001411') , _namespace_SOFA('http://purl.obolibrary.org/obo/SO_1000005') : _namespace_SOFA('http://purl.obolibrary.org/obo/SO_1000002') , _namespace_SOFA('http://purl.obolibrary.org/obo/SO_1000008') : _namespace_SOFA('http://purl.obolibrary.org/obo/SO_0001483') , _namespace_SOFA('http://purl.obolibrary.org/obo/SO_1000036') : _namespace_SOFA('http://purl.obolibrary.org/obo/SO_0001411') , _namespace_SOFA('http://purl.obolibrary.org/obo/SO_1001284') : _namespace_SOFA('http://purl.obolibrary.org/obo/SO_0005855') , _namespace_SOFA('http://purl.obolibrary.org/obo/SO_2000061') : _namespace_SOFA('http://purl.obolibrary.org/obo/SO_0000695') }
|
2422
2422
|
|