biointerchange 0.1.3 → 0.2.0

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Files changed (30) hide show
  1. data/README.md +17 -0
  2. data/VERSION +1 -1
  3. data/generators/GOxrefify.rb +41 -0
  4. data/generators/rdfxml.rb +6 -4
  5. data/lib/biointerchange/core.rb +94 -20
  6. data/lib/biointerchange/genomics/gff3_feature_set.rb +11 -3
  7. data/lib/biointerchange/genomics/gff3_pragmas.rb +3 -3
  8. data/lib/biointerchange/genomics/gff3_rdf_ntriples.rb +217 -12
  9. data/lib/biointerchange/genomics/gff3_reader.rb +78 -20
  10. data/lib/biointerchange/genomics/gvf_reader.rb +9 -3
  11. data/lib/biointerchange/gff3o.rb +69 -55
  12. data/lib/biointerchange/goxref.rb +867 -0
  13. data/lib/biointerchange/gvf1o.rb +546 -82
  14. data/lib/biointerchange/textmining/text_mining_reader.rb +9 -0
  15. data/spec/gff3_rdfwriter_spec.rb +1 -1
  16. data/spec/gvf_rdfwriter_spec.rb +1 -1
  17. data/spec/text_mining_pdfx_xml_reader_spec.rb +3 -0
  18. data/spec/text_mining_pubannos_json_reader_spec.rb +4 -1
  19. data/supplemental/java/biointerchange/pom.xml +1 -1
  20. data/supplemental/java/biointerchange/src/main/java/org/biointerchange/vocabulary/GFF3O.java +93 -125
  21. data/supplemental/java/biointerchange/src/main/java/org/biointerchange/vocabulary/GVF1O.java +304 -205
  22. data/supplemental/java/biointerchange/src/main/java/org/biointerchange/vocabulary/SIO.java +4044 -4290
  23. data/supplemental/java/biointerchange/src/main/java/org/biointerchange/vocabulary/SOFA.java +3 -3
  24. data/supplemental/python/biointerchange/gff3o.py +1 -89
  25. data/supplemental/python/biointerchange/gvf1o.py +129 -147
  26. data/supplemental/python/biointerchange/sio.py +817 -46
  27. data/supplemental/python/biointerchange/sofa.py +543 -543
  28. data/supplemental/python/setup.py +1 -1
  29. data/web/ontologies.html +1 -3
  30. metadata +7 -2
@@ -14,11 +14,18 @@ import org.apache.commons.collections.Predicate;
14
14
  public class GVF1O {
15
15
 
16
16
  /**
17
- * Strand of the feature.
18
- * (http://www.biointerchange.org/gvf1o#GVF1_0010)
17
+ * Either:
18
+ * Strand of the feature.
19
+ * (http://www.biointerchange.org/gvf1o#GVF1_0010)
20
+ * Or:
21
+ * Strand of the breakpoint.
22
+ * (http://www.biointerchange.org/gvf1o#GVF1_0083)
23
+ * Or:
24
+ * Strand of a target -- if applicable.
25
+ * (http://www.biointerchange.org/gvf1o#GVF1_0091)
19
26
  */
20
- public static Resource strand() {
21
- return _namespace_GVF1O("GVF1_0010");
27
+ public static Set<Resource> strand() {
28
+ return new HashSet<Resource>(Arrays.asList(new Resource[] { _namespace_GVF1O("http://www.biointerchange.org/gvf1o#GVF1_0010"), _namespace_GVF1O("http://www.biointerchange.org/gvf1o#GVF1_0083"), _namespace_GVF1O("http://www.biointerchange.org/gvf1o#GVF1_0091") }));
22
29
  }
23
30
 
24
31
  /**
@@ -26,7 +33,7 @@ public class GVF1O {
26
33
  * (http://www.biointerchange.org/gvf1o#GVF1_0012)
27
34
  */
28
35
  public static Resource attributes() {
29
- return _namespace_GVF1O("GVF1_0012");
36
+ return _namespace_GVF1O("http://www.biointerchange.org/gvf1o#GVF1_0012");
30
37
  }
31
38
 
32
39
  /**
@@ -34,7 +41,7 @@ public class GVF1O {
34
41
  * (http://www.biointerchange.org/gvf1o#GVF1_0014)
35
42
  */
36
43
  public static Resource parent() {
37
- return _namespace_GVF1O("GVF1_0014");
44
+ return _namespace_GVF1O("http://www.biointerchange.org/gvf1o#GVF1_0014");
38
45
  }
39
46
 
40
47
  /**
@@ -42,7 +49,7 @@ public class GVF1O {
42
49
  * (http://www.biointerchange.org/gvf1o#GVF1_0015)
43
50
  */
44
51
  public static Resource contains() {
45
- return _namespace_GVF1O("GVF1_0015");
52
+ return _namespace_GVF1O("http://www.biointerchange.org/gvf1o#GVF1_0015");
46
53
  }
47
54
 
48
55
  /**
@@ -52,9 +59,12 @@ public class GVF1O {
52
59
  * Or:
53
60
  * FALDO "Region" instance replacement for a breakpoint"s start, stop, strand properties.
54
61
  * (http://www.biointerchange.org/gvf1o#GVF1_0079)
62
+ * Or:
63
+ * FALDO "Region" instance replacement for a target"s start, stop, strand properties.
64
+ * (http://www.biointerchange.org/gvf1o#GVF1_0090)
55
65
  */
56
66
  public static Set<Resource> region() {
57
- return new HashSet<Resource>(Arrays.asList(new Resource[] { _namespace_GVF1O("GVF1_0021"), _namespace_GVF1O("GVF1_0079") }));
67
+ return new HashSet<Resource>(Arrays.asList(new Resource[] { _namespace_GVF1O("http://www.biointerchange.org/gvf1o#GVF1_0021"), _namespace_GVF1O("http://www.biointerchange.org/gvf1o#GVF1_0079"), _namespace_GVF1O("http://www.biointerchange.org/gvf1o#GVF1_0090") }));
58
68
  }
59
69
 
60
70
  /**
@@ -62,7 +72,7 @@ public class GVF1O {
62
72
  * (http://www.biointerchange.org/gvf1o#GVF1_0023)
63
73
  */
64
74
  public static Resource species() {
65
- return _namespace_GVF1O("GVF1_0023");
75
+ return _namespace_GVF1O("http://www.biointerchange.org/gvf1o#GVF1_0023");
66
76
  }
67
77
 
68
78
  /**
@@ -70,7 +80,7 @@ public class GVF1O {
70
80
  * (http://www.biointerchange.org/gvf1o#GVF1_0034)
71
81
  */
72
82
  public static Resource variant() {
73
- return _namespace_GVF1O("GVF1_0034");
83
+ return _namespace_GVF1O("http://www.biointerchange.org/gvf1o#GVF1_0034");
74
84
  }
75
85
 
76
86
  /**
@@ -78,7 +88,15 @@ public class GVF1O {
78
88
  * (http://www.biointerchange.org/gvf1o#GVF1_0036)
79
89
  */
80
90
  public static Resource individual() {
81
- return _namespace_GVF1O("GVF1_0036");
91
+ return _namespace_GVF1O("http://www.biointerchange.org/gvf1o#GVF1_0036");
92
+ }
93
+
94
+ /**
95
+ * Zygosity of a variant.
96
+ * (http://www.biointerchange.org/gvf1o#GVF1_0038)
97
+ */
98
+ public static Resource zygosity() {
99
+ return _namespace_GVF1O("http://www.biointerchange.org/gvf1o#GVF1_0038");
82
100
  }
83
101
 
84
102
  /**
@@ -86,7 +104,7 @@ public class GVF1O {
86
104
  * (http://www.biointerchange.org/gvf1o#GVF1_0041)
87
105
  */
88
106
  public static Resource effect() {
89
- return _namespace_GVF1O("GVF1_0041");
107
+ return _namespace_GVF1O("http://www.biointerchange.org/gvf1o#GVF1_0041");
90
108
  }
91
109
 
92
110
  /**
@@ -94,7 +112,7 @@ public class GVF1O {
94
112
  * (http://www.biointerchange.org/gvf1o#GVF1_0042)
95
113
  */
96
114
  public static Resource sequence_variant() {
97
- return _namespace_GVF1O("GVF1_0042");
115
+ return _namespace_GVF1O("http://www.biointerchange.org/gvf1o#GVF1_0042");
98
116
  }
99
117
 
100
118
  /**
@@ -102,7 +120,7 @@ public class GVF1O {
102
120
  * (http://www.biointerchange.org/gvf1o#GVF1_0043)
103
121
  */
104
122
  public static Resource feature_type() {
105
- return _namespace_GVF1O("GVF1_0043");
123
+ return _namespace_GVF1O("http://www.biointerchange.org/gvf1o#GVF1_0043");
106
124
  }
107
125
 
108
126
  /**
@@ -110,7 +128,7 @@ public class GVF1O {
110
128
  * (http://www.biointerchange.org/gvf1o#GVF1_0044)
111
129
  */
112
130
  public static Resource feature_id() {
113
- return _namespace_GVF1O("GVF1_0044");
131
+ return _namespace_GVF1O("http://www.biointerchange.org/gvf1o#GVF1_0044");
114
132
  }
115
133
 
116
134
  /**
@@ -118,7 +136,7 @@ public class GVF1O {
118
136
  * (http://www.biointerchange.org/gvf1o#GVF1_0046)
119
137
  */
120
138
  public static Resource start_range() {
121
- return _namespace_GVF1O("GVF1_0046");
139
+ return _namespace_GVF1O("http://www.biointerchange.org/gvf1o#GVF1_0046");
122
140
  }
123
141
 
124
142
  /**
@@ -126,7 +144,7 @@ public class GVF1O {
126
144
  * (http://www.biointerchange.org/gvf1o#GVF1_0047)
127
145
  */
128
146
  public static Resource end_range() {
129
- return _namespace_GVF1O("GVF1_0047");
147
+ return _namespace_GVF1O("http://www.biointerchange.org/gvf1o#GVF1_0047");
130
148
  }
131
149
 
132
150
  /**
@@ -134,7 +152,7 @@ public class GVF1O {
134
152
  * (http://www.biointerchange.org/gvf1o#GVF1_0051)
135
153
  */
136
154
  public static Resource chromosome() {
137
- return _namespace_GVF1O("GVF1_0051");
155
+ return _namespace_GVF1O("http://www.biointerchange.org/gvf1o#GVF1_0051");
138
156
  }
139
157
 
140
158
  /**
@@ -142,7 +160,7 @@ public class GVF1O {
142
160
  * (http://www.biointerchange.org/gvf1o#GVF1_0053)
143
161
  */
144
162
  public static Resource genotype() {
145
- return _namespace_GVF1O("GVF1_0053");
163
+ return _namespace_GVF1O("http://www.biointerchange.org/gvf1o#GVF1_0053");
146
164
  }
147
165
 
148
166
  /**
@@ -154,7 +172,7 @@ public class GVF1O {
154
172
  * (http://www.biointerchange.org/gvf1o#GVF1_0059)
155
173
  */
156
174
  public static Set<Resource> feature_properties() {
157
- return new HashSet<Resource>(Arrays.asList(new Resource[] { _namespace_GVF1O("GVF1_0066"), _namespace_GVF1O("GVF1_0059") }));
175
+ return new HashSet<Resource>(Arrays.asList(new Resource[] { _namespace_GVF1O("http://www.biointerchange.org/gvf1o#GVF1_0066"), _namespace_GVF1O("http://www.biointerchange.org/gvf1o#GVF1_0059") }));
158
176
  }
159
177
 
160
178
  /**
@@ -166,7 +184,7 @@ public class GVF1O {
166
184
  * (http://www.biointerchange.org/gvf1o#GVF1_0065)
167
185
  */
168
186
  public static Set<Resource> sequencedindividual_properties() {
169
- return new HashSet<Resource>(Arrays.asList(new Resource[] { _namespace_GVF1O("GVF1_0067"), _namespace_GVF1O("GVF1_0065") }));
187
+ return new HashSet<Resource>(Arrays.asList(new Resource[] { _namespace_GVF1O("http://www.biointerchange.org/gvf1o#GVF1_0067"), _namespace_GVF1O("http://www.biointerchange.org/gvf1o#GVF1_0065") }));
170
188
  }
171
189
 
172
190
  /**
@@ -178,7 +196,7 @@ public class GVF1O {
178
196
  * (http://www.biointerchange.org/gvf1o#GVF1_0063)
179
197
  */
180
198
  public static Set<Resource> set_properties() {
181
- return new HashSet<Resource>(Arrays.asList(new Resource[] { _namespace_GVF1O("GVF1_0068"), _namespace_GVF1O("GVF1_0063") }));
199
+ return new HashSet<Resource>(Arrays.asList(new Resource[] { _namespace_GVF1O("http://www.biointerchange.org/gvf1o#GVF1_0068"), _namespace_GVF1O("http://www.biointerchange.org/gvf1o#GVF1_0063") }));
182
200
  }
183
201
 
184
202
  /**
@@ -190,7 +208,7 @@ public class GVF1O {
190
208
  * (http://www.biointerchange.org/gvf1o#GVF1_0060)
191
209
  */
192
210
  public static Set<Resource> variant_properties() {
193
- return new HashSet<Resource>(Arrays.asList(new Resource[] { _namespace_GVF1O("GVF1_0069"), _namespace_GVF1O("GVF1_0060") }));
211
+ return new HashSet<Resource>(Arrays.asList(new Resource[] { _namespace_GVF1O("http://www.biointerchange.org/gvf1o#GVF1_0069"), _namespace_GVF1O("http://www.biointerchange.org/gvf1o#GVF1_0060") }));
194
212
  }
195
213
 
196
214
  /**
@@ -198,7 +216,7 @@ public class GVF1O {
198
216
  * (http://www.biointerchange.org/gvf1o#GVF1_0070)
199
217
  */
200
218
  public static Resource effect_properties() {
201
- return _namespace_GVF1O("GVF1_0070");
219
+ return _namespace_GVF1O("http://www.biointerchange.org/gvf1o#GVF1_0070");
202
220
  }
203
221
 
204
222
  /**
@@ -210,7 +228,7 @@ public class GVF1O {
210
228
  * (http://www.biointerchange.org/gvf1o#GVF1_0071)
211
229
  */
212
230
  public static Set<Resource> breakpoint_properties() {
213
- return new HashSet<Resource>(Arrays.asList(new Resource[] { _namespace_GVF1O("GVF1_0075"), _namespace_GVF1O("GVF1_0071") }));
231
+ return new HashSet<Resource>(Arrays.asList(new Resource[] { _namespace_GVF1O("http://www.biointerchange.org/gvf1o#GVF1_0075"), _namespace_GVF1O("http://www.biointerchange.org/gvf1o#GVF1_0071") }));
214
232
  }
215
233
 
216
234
  /**
@@ -218,7 +236,27 @@ public class GVF1O {
218
236
  * (http://www.biointerchange.org/gvf1o#GVF1_0078)
219
237
  */
220
238
  public static Resource dbxref() {
221
- return _namespace_GVF1O("GVF1_0078");
239
+ return _namespace_GVF1O("http://www.biointerchange.org/gvf1o#GVF1_0078");
240
+ }
241
+
242
+ /**
243
+ * Potential source or destination of zero-length sequence alterations.
244
+ * (http://www.biointerchange.org/gvf1o#GVF1_0080)
245
+ */
246
+ public static Resource breakpoint() {
247
+ return _namespace_GVF1O("http://www.biointerchange.org/gvf1o#GVF1_0080");
248
+ }
249
+
250
+ /**
251
+ * Either:
252
+ * Properties that are directly associated with Target class instances.
253
+ * (http://www.biointerchange.org/gvf1o#GVF1_0089)
254
+ * Or:
255
+ * Properties that are directly associated with Target class instances.
256
+ * (http://www.biointerchange.org/gvf1o#GVF1_0092)
257
+ */
258
+ public static Set<Resource> target_properties() {
259
+ return new HashSet<Resource>(Arrays.asList(new Resource[] { _namespace_GVF1O("http://www.biointerchange.org/gvf1o#GVF1_0089"), _namespace_GVF1O("http://www.biointerchange.org/gvf1o#GVF1_0092") }));
222
260
  }
223
261
 
224
262
  /**
@@ -230,7 +268,7 @@ public class GVF1O {
230
268
  * (http://www.biointerchange.org/gvf1o#GVF1_0072)
231
269
  */
232
270
  public static Set<Resource> seqid() {
233
- return new HashSet<Resource>(Arrays.asList(new Resource[] { _namespace_GVF1O("GVF1_0004"), _namespace_GVF1O("GVF1_0072") }));
271
+ return new HashSet<Resource>(Arrays.asList(new Resource[] { _namespace_GVF1O("http://www.biointerchange.org/gvf1o#GVF1_0004"), _namespace_GVF1O("http://www.biointerchange.org/gvf1o#GVF1_0072") }));
234
272
  }
235
273
 
236
274
  /**
@@ -238,7 +276,7 @@ public class GVF1O {
238
276
  * (http://www.biointerchange.org/gvf1o#GVF1_0005)
239
277
  */
240
278
  public static Resource source() {
241
- return _namespace_GVF1O("GVF1_0005");
279
+ return _namespace_GVF1O("http://www.biointerchange.org/gvf1o#GVF1_0005");
242
280
  }
243
281
 
244
282
  /**
@@ -246,7 +284,7 @@ public class GVF1O {
246
284
  * (http://www.biointerchange.org/gvf1o#GVF1_0006)
247
285
  */
248
286
  public static Resource type() {
249
- return _namespace_GVF1O("GVF1_0006");
287
+ return _namespace_GVF1O("http://www.biointerchange.org/gvf1o#GVF1_0006");
250
288
  }
251
289
 
252
290
  /**
@@ -259,9 +297,12 @@ public class GVF1O {
259
297
  * Or:
260
298
  * Start coordinate of the feature on the seqid landmark.
261
299
  * (http://www.biointerchange.org/gvf1o#GVF1_0073)
300
+ * Or:
301
+ * Start coordinate of the target.
302
+ * (http://www.biointerchange.org/gvf1o#GVF1_0094)
262
303
  */
263
304
  public static Set<Resource> start() {
264
- return new HashSet<Resource>(Arrays.asList(new Resource[] { _namespace_GVF1O("GVF1_0007"), _namespace_GVF1O("GVF1_0048"), _namespace_GVF1O("GVF1_0073") }));
305
+ return new HashSet<Resource>(Arrays.asList(new Resource[] { _namespace_GVF1O("http://www.biointerchange.org/gvf1o#GVF1_0007"), _namespace_GVF1O("http://www.biointerchange.org/gvf1o#GVF1_0048"), _namespace_GVF1O("http://www.biointerchange.org/gvf1o#GVF1_0073"), _namespace_GVF1O("http://www.biointerchange.org/gvf1o#GVF1_0094") }));
265
306
  }
266
307
 
267
308
  /**
@@ -274,9 +315,12 @@ public class GVF1O {
274
315
  * Or:
275
316
  * End coordinate of the feature on the seqid landmark.
276
317
  * (http://www.biointerchange.org/gvf1o#GVF1_0074)
318
+ * Or:
319
+ * End coordinate of the target.
320
+ * (http://www.biointerchange.org/gvf1o#GVF1_0095)
277
321
  */
278
322
  public static Set<Resource> end() {
279
- return new HashSet<Resource>(Arrays.asList(new Resource[] { _namespace_GVF1O("GVF1_0008"), _namespace_GVF1O("GVF1_0049"), _namespace_GVF1O("GVF1_0074") }));
323
+ return new HashSet<Resource>(Arrays.asList(new Resource[] { _namespace_GVF1O("http://www.biointerchange.org/gvf1o#GVF1_0008"), _namespace_GVF1O("http://www.biointerchange.org/gvf1o#GVF1_0049"), _namespace_GVF1O("http://www.biointerchange.org/gvf1o#GVF1_0074"), _namespace_GVF1O("http://www.biointerchange.org/gvf1o#GVF1_0095") }));
280
324
  }
281
325
 
282
326
  /**
@@ -284,7 +328,7 @@ public class GVF1O {
284
328
  * (http://www.biointerchange.org/gvf1o#GVF1_0009)
285
329
  */
286
330
  public static Resource score() {
287
- return _namespace_GVF1O("GVF1_0009");
331
+ return _namespace_GVF1O("http://www.biointerchange.org/gvf1o#GVF1_0009");
288
332
  }
289
333
 
290
334
  /**
@@ -292,15 +336,15 @@ public class GVF1O {
292
336
  * (http://www.biointerchange.org/gvf1o#GVF1_0013)
293
337
  */
294
338
  public static Resource tag() {
295
- return _namespace_GVF1O("GVF1_0013");
339
+ return _namespace_GVF1O("http://www.biointerchange.org/gvf1o#GVF1_0013");
296
340
  }
297
341
 
298
342
  /**
299
343
  * Version of the GVF specification that defines the feature set contents.
300
344
  * (http://www.biointerchange.org/gvf1o#GVF1_0022)
301
345
  */
302
- public static Resource version() {
303
- return _namespace_GVF1O("GVF1_0022");
346
+ public static Resource gvf_version() {
347
+ return _namespace_GVF1O("http://www.biointerchange.org/gvf1o#GVF1_0022");
304
348
  }
305
349
 
306
350
  /**
@@ -308,7 +352,7 @@ public class GVF1O {
308
352
  * (http://www.biointerchange.org/gvf1o#GVF1_0024)
309
353
  */
310
354
  public static Resource build() {
311
- return _namespace_GVF1O("GVF1_0024");
355
+ return _namespace_GVF1O("http://www.biointerchange.org/gvf1o#GVF1_0024");
312
356
  }
313
357
 
314
358
  /**
@@ -316,7 +360,7 @@ public class GVF1O {
316
360
  * (http://www.biointerchange.org/gvf1o#GVF1_0025)
317
361
  */
318
362
  public static Resource variant_seq() {
319
- return _namespace_GVF1O("GVF1_0025");
363
+ return _namespace_GVF1O("http://www.biointerchange.org/gvf1o#GVF1_0025");
320
364
  }
321
365
 
322
366
  /**
@@ -324,7 +368,7 @@ public class GVF1O {
324
368
  * (http://www.biointerchange.org/gvf1o#GVF1_0026)
325
369
  */
326
370
  public static Resource id() {
327
- return _namespace_GVF1O("GVF1_0026");
371
+ return _namespace_GVF1O("http://www.biointerchange.org/gvf1o#GVF1_0026");
328
372
  }
329
373
 
330
374
  /**
@@ -332,7 +376,7 @@ public class GVF1O {
332
376
  * (http://www.biointerchange.org/gvf1o#GVF1_0027)
333
377
  */
334
378
  public static Resource alias() {
335
- return _namespace_GVF1O("GVF1_0027");
379
+ return _namespace_GVF1O("http://www.biointerchange.org/gvf1o#GVF1_0027");
336
380
  }
337
381
 
338
382
  /**
@@ -340,7 +384,7 @@ public class GVF1O {
340
384
  * (http://www.biointerchange.org/gvf1o#GVF1_0029)
341
385
  */
342
386
  public static Resource name() {
343
- return _namespace_GVF1O("GVF1_0029");
387
+ return _namespace_GVF1O("http://www.biointerchange.org/gvf1o#GVF1_0029");
344
388
  }
345
389
 
346
390
  /**
@@ -348,7 +392,7 @@ public class GVF1O {
348
392
  * (http://www.biointerchange.org/gvf1o#GVF1_0030)
349
393
  */
350
394
  public static Resource xref() {
351
- return _namespace_GVF1O("GVF1_0030");
395
+ return _namespace_GVF1O("http://www.biointerchange.org/gvf1o#GVF1_0030");
352
396
  }
353
397
 
354
398
  /**
@@ -356,7 +400,7 @@ public class GVF1O {
356
400
  * (http://www.biointerchange.org/gvf1o#GVF1_0031)
357
401
  */
358
402
  public static Resource reference_seq() {
359
- return _namespace_GVF1O("GVF1_0031");
403
+ return _namespace_GVF1O("http://www.biointerchange.org/gvf1o#GVF1_0031");
360
404
  }
361
405
 
362
406
  /**
@@ -364,7 +408,7 @@ public class GVF1O {
364
408
  * (http://www.biointerchange.org/gvf1o#GVF1_0032)
365
409
  */
366
410
  public static Resource variant_reads() {
367
- return _namespace_GVF1O("GVF1_0032");
411
+ return _namespace_GVF1O("http://www.biointerchange.org/gvf1o#GVF1_0032");
368
412
  }
369
413
 
370
414
  /**
@@ -372,15 +416,7 @@ public class GVF1O {
372
416
  * (http://www.biointerchange.org/gvf1o#GVF1_0037)
373
417
  */
374
418
  public static Resource total_reads() {
375
- return _namespace_GVF1O("GVF1_0037");
376
- }
377
-
378
- /**
379
- * Zygosity of a feature locus.
380
- * (http://www.biointerchange.org/gvf1o#GVF1_0038)
381
- */
382
- public static Resource zygosity() {
383
- return _namespace_GVF1O("GVF1_0038");
419
+ return _namespace_GVF1O("http://www.biointerchange.org/gvf1o#GVF1_0037");
384
420
  }
385
421
 
386
422
  /**
@@ -388,7 +424,7 @@ public class GVF1O {
388
424
  * (http://www.biointerchange.org/gvf1o#GVF1_0039)
389
425
  */
390
426
  public static Resource variant_freq() {
391
- return _namespace_GVF1O("GVF1_0039");
427
+ return _namespace_GVF1O("http://www.biointerchange.org/gvf1o#GVF1_0039");
392
428
  }
393
429
 
394
430
  /**
@@ -396,7 +432,7 @@ public class GVF1O {
396
432
  * (http://www.biointerchange.org/gvf1o#GVF1_0050)
397
433
  */
398
434
  public static Resource phased() {
399
- return _namespace_GVF1O("GVF1_0050");
435
+ return _namespace_GVF1O("http://www.biointerchange.org/gvf1o#GVF1_0050");
400
436
  }
401
437
 
402
438
  /**
@@ -404,7 +440,7 @@ public class GVF1O {
404
440
  * (http://www.biointerchange.org/gvf1o#GVF1_0054)
405
441
  */
406
442
  public static Resource variant_codon() {
407
- return _namespace_GVF1O("GVF1_0054");
443
+ return _namespace_GVF1O("http://www.biointerchange.org/gvf1o#GVF1_0054");
408
444
  }
409
445
 
410
446
  /**
@@ -412,7 +448,7 @@ public class GVF1O {
412
448
  * (http://www.biointerchange.org/gvf1o#GVF1_0055)
413
449
  */
414
450
  public static Resource reference_codon() {
415
- return _namespace_GVF1O("GVF1_0055");
451
+ return _namespace_GVF1O("http://www.biointerchange.org/gvf1o#GVF1_0055");
416
452
  }
417
453
 
418
454
  /**
@@ -420,7 +456,7 @@ public class GVF1O {
420
456
  * (http://www.biointerchange.org/gvf1o#GVF1_0056)
421
457
  */
422
458
  public static Resource variant_aa() {
423
- return _namespace_GVF1O("GVF1_0056");
459
+ return _namespace_GVF1O("http://www.biointerchange.org/gvf1o#GVF1_0056");
424
460
  }
425
461
 
426
462
  /**
@@ -428,7 +464,7 @@ public class GVF1O {
428
464
  * (http://www.biointerchange.org/gvf1o#GVF1_0057)
429
465
  */
430
466
  public static Resource reference_aa() {
431
- return _namespace_GVF1O("GVF1_0057");
467
+ return _namespace_GVF1O("http://www.biointerchange.org/gvf1o#GVF1_0057");
432
468
  }
433
469
 
434
470
  /**
@@ -436,7 +472,7 @@ public class GVF1O {
436
472
  * (http://www.biointerchange.org/gvf1o#GVF1_0061)
437
473
  */
438
474
  public static Resource range_properties() {
439
- return _namespace_GVF1O("GVF1_0061");
475
+ return _namespace_GVF1O("http://www.biointerchange.org/gvf1o#GVF1_0061");
440
476
  }
441
477
 
442
478
  /**
@@ -444,7 +480,7 @@ public class GVF1O {
444
480
  * (http://www.biointerchange.org/gvf1o#GVF1_0062)
445
481
  */
446
482
  public static Resource dbxref_properties() {
447
- return _namespace_GVF1O("GVF1_0062");
483
+ return _namespace_GVF1O("http://www.biointerchange.org/gvf1o#GVF1_0062");
448
484
  }
449
485
 
450
486
  /**
@@ -452,7 +488,7 @@ public class GVF1O {
452
488
  * (http://www.biointerchange.org/gvf1o#GVF1_0064)
453
489
  */
454
490
  public static Resource attribute_properties() {
455
- return _namespace_GVF1O("GVF1_0064");
491
+ return _namespace_GVF1O("http://www.biointerchange.org/gvf1o#GVF1_0064");
456
492
  }
457
493
 
458
494
  /**
@@ -460,7 +496,31 @@ public class GVF1O {
460
496
  * (http://www.biointerchange.org/gvf1o#GVF1_0076)
461
497
  */
462
498
  public static Resource a_context() {
463
- return _namespace_GVF1O("GVF1_0076");
499
+ return _namespace_GVF1O("http://www.biointerchange.org/gvf1o#GVF1_0076");
500
+ }
501
+
502
+ /**
503
+ * Version of the GFF specification that defines the feature set contents apart from GVF related definitions.
504
+ * (http://www.biointerchange.org/gvf1o#GVF1_0081)
505
+ */
506
+ public static Resource gff_version() {
507
+ return _namespace_GVF1O("http://www.biointerchange.org/gvf1o#GVF1_0081");
508
+ }
509
+
510
+ /**
511
+ * Creation date of the GVF file that this set stems from.
512
+ * (http://www.biointerchange.org/gvf1o#GVF1_0082)
513
+ */
514
+ public static Resource file_date() {
515
+ return _namespace_GVF1O("http://www.biointerchange.org/gvf1o#GVF1_0082");
516
+ }
517
+
518
+ /**
519
+ * ID or accession of the target alignment.
520
+ * (http://www.biointerchange.org/gvf1o#GVF1_0093)
521
+ */
522
+ public static Resource target_id() {
523
+ return _namespace_GVF1O("http://www.biointerchange.org/gvf1o#GVF1_0093");
464
524
  }
465
525
 
466
526
  /**
@@ -468,7 +528,7 @@ public class GVF1O {
468
528
  * (http://www.biointerchange.org/gvf1o#GVF1_0001)
469
529
  */
470
530
  public static Resource Set() {
471
- return _namespace_GVF1O("GVF1_0001");
531
+ return _namespace_GVF1O("http://www.biointerchange.org/gvf1o#GVF1_0001");
472
532
  }
473
533
 
474
534
  /**
@@ -476,11 +536,11 @@ public class GVF1O {
476
536
  * (http://www.biointerchange.org/gvf1o#GVF1_0002)
477
537
  */
478
538
  public static Resource Feature() {
479
- return _namespace_GVF1O("GVF1_0002");
539
+ return _namespace_GVF1O("http://www.biointerchange.org/gvf1o#GVF1_0002");
480
540
  }
481
541
 
482
542
  public static Resource Attribute() {
483
- return _namespace_GVF1O("GVF1_0003");
543
+ return _namespace_GVF1O("http://www.biointerchange.org/gvf1o#GVF1_0003");
484
544
  }
485
545
 
486
546
  /**
@@ -488,7 +548,7 @@ public class GVF1O {
488
548
  * (http://www.biointerchange.org/gvf1o#GVF1_0016)
489
549
  */
490
550
  public static Resource Strand() {
491
- return _namespace_GVF1O("GVF1_0016");
551
+ return _namespace_GVF1O("http://www.biointerchange.org/gvf1o#GVF1_0016");
492
552
  }
493
553
 
494
554
  /**
@@ -496,7 +556,7 @@ public class GVF1O {
496
556
  * (http://www.biointerchange.org/gvf1o#GVF1_0028)
497
557
  */
498
558
  public static Resource DBXRef() {
499
- return _namespace_GVF1O("GVF1_0028");
559
+ return _namespace_GVF1O("http://www.biointerchange.org/gvf1o#GVF1_0028");
500
560
  }
501
561
 
502
562
  /**
@@ -504,7 +564,7 @@ public class GVF1O {
504
564
  * (http://www.biointerchange.org/gvf1o#GVF1_0033)
505
565
  */
506
566
  public static Resource Variant() {
507
- return _namespace_GVF1O("GVF1_0033");
567
+ return _namespace_GVF1O("http://www.biointerchange.org/gvf1o#GVF1_0033");
508
568
  }
509
569
 
510
570
  /**
@@ -512,7 +572,7 @@ public class GVF1O {
512
572
  * (http://www.biointerchange.org/gvf1o#GVF1_0035)
513
573
  */
514
574
  public static Resource SequencedIndividual() {
515
- return _namespace_GVF1O("GVF1_0035");
575
+ return _namespace_GVF1O("http://www.biointerchange.org/gvf1o#GVF1_0035");
516
576
  }
517
577
 
518
578
  /**
@@ -520,7 +580,7 @@ public class GVF1O {
520
580
  * (http://www.biointerchange.org/gvf1o#GVF1_0040)
521
581
  */
522
582
  public static Resource Effect() {
523
- return _namespace_GVF1O("GVF1_0040");
583
+ return _namespace_GVF1O("http://www.biointerchange.org/gvf1o#GVF1_0040");
524
584
  }
525
585
 
526
586
  /**
@@ -528,7 +588,7 @@ public class GVF1O {
528
588
  * (http://www.biointerchange.org/gvf1o#GVF1_0045)
529
589
  */
530
590
  public static Resource Range() {
531
- return _namespace_GVF1O("GVF1_0045");
591
+ return _namespace_GVF1O("http://www.biointerchange.org/gvf1o#GVF1_0045");
532
592
  }
533
593
 
534
594
  /**
@@ -536,7 +596,7 @@ public class GVF1O {
536
596
  * (http://www.biointerchange.org/gvf1o#GVF1_0052)
537
597
  */
538
598
  public static Resource Chromosome() {
539
- return _namespace_GVF1O("GVF1_0052");
599
+ return _namespace_GVF1O("http://www.biointerchange.org/gvf1o#GVF1_0052");
540
600
  }
541
601
 
542
602
  /**
@@ -544,7 +604,23 @@ public class GVF1O {
544
604
  * (http://www.biointerchange.org/gvf1o#GVF1_0058)
545
605
  */
546
606
  public static Resource Breakpoint() {
547
- return _namespace_GVF1O("GVF1_0058");
607
+ return _namespace_GVF1O("http://www.biointerchange.org/gvf1o#GVF1_0058");
608
+ }
609
+
610
+ /**
611
+ * Denotes the zygosity of alleles.
612
+ * (http://www.biointerchange.org/gvf1o#GVF1_0084)
613
+ */
614
+ public static Resource Zygosity() {
615
+ return _namespace_GVF1O("http://www.biointerchange.org/gvf1o#GVF1_0084");
616
+ }
617
+
618
+ /**
619
+ * Indicates a feature"s "target" of a nucleotide-to-nucleotide or protein-to-nucleotide alignment.
620
+ * (http://www.biointerchange.org/gvf1o#GVF1_0088)
621
+ */
622
+ public static Resource Target() {
623
+ return _namespace_GVF1O("http://www.biointerchange.org/gvf1o#GVF1_0088");
548
624
  }
549
625
 
550
626
  /**
@@ -552,7 +628,7 @@ public class GVF1O {
552
628
  * (http://www.biointerchange.org/gvf1o#GVF1_0017)
553
629
  */
554
630
  public static Resource Positive() {
555
- return _namespace_GVF1O("GVF1_0017");
631
+ return _namespace_GVF1O("http://www.biointerchange.org/gvf1o#GVF1_0017");
556
632
  }
557
633
 
558
634
  /**
@@ -560,7 +636,7 @@ public class GVF1O {
560
636
  * (http://www.biointerchange.org/gvf1o#GVF1_0018)
561
637
  */
562
638
  public static Resource Negative() {
563
- return _namespace_GVF1O("GVF1_0018");
639
+ return _namespace_GVF1O("http://www.biointerchange.org/gvf1o#GVF1_0018");
564
640
  }
565
641
 
566
642
  /**
@@ -568,7 +644,7 @@ public class GVF1O {
568
644
  * (http://www.biointerchange.org/gvf1o#GVF1_0019)
569
645
  */
570
646
  public static Resource UnknownStrand() {
571
- return _namespace_GVF1O("GVF1_0019");
647
+ return _namespace_GVF1O("http://www.biointerchange.org/gvf1o#GVF1_0019");
572
648
  }
573
649
 
574
650
  /**
@@ -576,7 +652,31 @@ public class GVF1O {
576
652
  * (http://www.biointerchange.org/gvf1o#GVF1_0020)
577
653
  */
578
654
  public static Resource NotStranded() {
579
- return _namespace_GVF1O("GVF1_0020");
655
+ return _namespace_GVF1O("http://www.biointerchange.org/gvf1o#GVF1_0020");
656
+ }
657
+
658
+ /**
659
+ * Denotes heterozygous alleles.
660
+ * (http://www.biointerchange.org/gvf1o#GVF1_0085)
661
+ */
662
+ public static Resource Heterozygous() {
663
+ return _namespace_GVF1O("http://www.biointerchange.org/gvf1o#GVF1_0085");
664
+ }
665
+
666
+ /**
667
+ * Denotes homozygous alleles.
668
+ * (http://www.biointerchange.org/gvf1o#GVF1_0086)
669
+ */
670
+ public static Resource Homozygous() {
671
+ return _namespace_GVF1O("http://www.biointerchange.org/gvf1o#GVF1_0086");
672
+ }
673
+
674
+ /**
675
+ * Denotes hemizygous alleles.
676
+ * (http://www.biointerchange.org/gvf1o#GVF1_0087)
677
+ */
678
+ public static Resource Hemizygous() {
679
+ return _namespace_GVF1O("http://www.biointerchange.org/gvf1o#GVF1_0087");
580
680
  }
581
681
 
582
682
  /**
@@ -585,76 +685,94 @@ public class GVF1O {
585
685
  * @param uri URI that is tested for being an object property
586
686
  */
587
687
  public static boolean isObjectProperty(Resource uri) {
588
- if (uri.equals(ResourceFactory.createResource("http://www.biointerchange.org/gvf1o#GVF1_0010"))) {
688
+ if (uri == _namespace_GVF1O("http://www.biointerchange.org/gvf1o#GVF1_0010")) {
689
+ return true;
690
+ }
691
+ if (uri == _namespace_GVF1O("http://www.biointerchange.org/gvf1o#GVF1_0012")) {
692
+ return true;
693
+ }
694
+ if (uri == _namespace_GVF1O("http://www.biointerchange.org/gvf1o#GVF1_0014")) {
695
+ return true;
696
+ }
697
+ if (uri == _namespace_GVF1O("http://www.biointerchange.org/gvf1o#GVF1_0015")) {
698
+ return true;
699
+ }
700
+ if (uri == _namespace_GVF1O("http://www.biointerchange.org/gvf1o#GVF1_0021")) {
701
+ return true;
702
+ }
703
+ if (uri == _namespace_GVF1O("http://www.biointerchange.org/gvf1o#GVF1_0023")) {
704
+ return true;
705
+ }
706
+ if (uri == _namespace_GVF1O("http://www.biointerchange.org/gvf1o#GVF1_0034")) {
589
707
  return true;
590
708
  }
591
- if (uri.equals(ResourceFactory.createResource("http://www.biointerchange.org/gvf1o#GVF1_0012"))) {
709
+ if (uri == _namespace_GVF1O("http://www.biointerchange.org/gvf1o#GVF1_0036")) {
592
710
  return true;
593
711
  }
594
- if (uri.equals(ResourceFactory.createResource("http://www.biointerchange.org/gvf1o#GVF1_0014"))) {
712
+ if (uri == _namespace_GVF1O("http://www.biointerchange.org/gvf1o#GVF1_0038")) {
595
713
  return true;
596
714
  }
597
- if (uri.equals(ResourceFactory.createResource("http://www.biointerchange.org/gvf1o#GVF1_0015"))) {
715
+ if (uri == _namespace_GVF1O("http://www.biointerchange.org/gvf1o#GVF1_0041")) {
598
716
  return true;
599
717
  }
600
- if (uri.equals(ResourceFactory.createResource("http://www.biointerchange.org/gvf1o#GVF1_0021"))) {
718
+ if (uri == _namespace_GVF1O("http://www.biointerchange.org/gvf1o#GVF1_0042")) {
601
719
  return true;
602
720
  }
603
- if (uri.equals(ResourceFactory.createResource("http://www.biointerchange.org/gvf1o#GVF1_0023"))) {
721
+ if (uri == _namespace_GVF1O("http://www.biointerchange.org/gvf1o#GVF1_0043")) {
604
722
  return true;
605
723
  }
606
- if (uri.equals(ResourceFactory.createResource("http://www.biointerchange.org/gvf1o#GVF1_0034"))) {
724
+ if (uri == _namespace_GVF1O("http://www.biointerchange.org/gvf1o#GVF1_0044")) {
607
725
  return true;
608
726
  }
609
- if (uri.equals(ResourceFactory.createResource("http://www.biointerchange.org/gvf1o#GVF1_0036"))) {
727
+ if (uri == _namespace_GVF1O("http://www.biointerchange.org/gvf1o#GVF1_0046")) {
610
728
  return true;
611
729
  }
612
- if (uri.equals(ResourceFactory.createResource("http://www.biointerchange.org/gvf1o#GVF1_0041"))) {
730
+ if (uri == _namespace_GVF1O("http://www.biointerchange.org/gvf1o#GVF1_0047")) {
613
731
  return true;
614
732
  }
615
- if (uri.equals(ResourceFactory.createResource("http://www.biointerchange.org/gvf1o#GVF1_0042"))) {
733
+ if (uri == _namespace_GVF1O("http://www.biointerchange.org/gvf1o#GVF1_0051")) {
616
734
  return true;
617
735
  }
618
- if (uri.equals(ResourceFactory.createResource("http://www.biointerchange.org/gvf1o#GVF1_0043"))) {
736
+ if (uri == _namespace_GVF1O("http://www.biointerchange.org/gvf1o#GVF1_0053")) {
619
737
  return true;
620
738
  }
621
- if (uri.equals(ResourceFactory.createResource("http://www.biointerchange.org/gvf1o#GVF1_0044"))) {
739
+ if (uri == _namespace_GVF1O("http://www.biointerchange.org/gvf1o#GVF1_0066")) {
622
740
  return true;
623
741
  }
624
- if (uri.equals(ResourceFactory.createResource("http://www.biointerchange.org/gvf1o#GVF1_0046"))) {
742
+ if (uri == _namespace_GVF1O("http://www.biointerchange.org/gvf1o#GVF1_0067")) {
625
743
  return true;
626
744
  }
627
- if (uri.equals(ResourceFactory.createResource("http://www.biointerchange.org/gvf1o#GVF1_0047"))) {
745
+ if (uri == _namespace_GVF1O("http://www.biointerchange.org/gvf1o#GVF1_0068")) {
628
746
  return true;
629
747
  }
630
- if (uri.equals(ResourceFactory.createResource("http://www.biointerchange.org/gvf1o#GVF1_0051"))) {
748
+ if (uri == _namespace_GVF1O("http://www.biointerchange.org/gvf1o#GVF1_0069")) {
631
749
  return true;
632
750
  }
633
- if (uri.equals(ResourceFactory.createResource("http://www.biointerchange.org/gvf1o#GVF1_0053"))) {
751
+ if (uri == _namespace_GVF1O("http://www.biointerchange.org/gvf1o#GVF1_0070")) {
634
752
  return true;
635
753
  }
636
- if (uri.equals(ResourceFactory.createResource("http://www.biointerchange.org/gvf1o#GVF1_0066"))) {
754
+ if (uri == _namespace_GVF1O("http://www.biointerchange.org/gvf1o#GVF1_0075")) {
637
755
  return true;
638
756
  }
639
- if (uri.equals(ResourceFactory.createResource("http://www.biointerchange.org/gvf1o#GVF1_0067"))) {
757
+ if (uri == _namespace_GVF1O("http://www.biointerchange.org/gvf1o#GVF1_0078")) {
640
758
  return true;
641
759
  }
642
- if (uri.equals(ResourceFactory.createResource("http://www.biointerchange.org/gvf1o#GVF1_0068"))) {
760
+ if (uri == _namespace_GVF1O("http://www.biointerchange.org/gvf1o#GVF1_0079")) {
643
761
  return true;
644
762
  }
645
- if (uri.equals(ResourceFactory.createResource("http://www.biointerchange.org/gvf1o#GVF1_0069"))) {
763
+ if (uri == _namespace_GVF1O("http://www.biointerchange.org/gvf1o#GVF1_0080")) {
646
764
  return true;
647
765
  }
648
- if (uri.equals(ResourceFactory.createResource("http://www.biointerchange.org/gvf1o#GVF1_0070"))) {
766
+ if (uri == _namespace_GVF1O("http://www.biointerchange.org/gvf1o#GVF1_0083")) {
649
767
  return true;
650
768
  }
651
- if (uri.equals(ResourceFactory.createResource("http://www.biointerchange.org/gvf1o#GVF1_0075"))) {
769
+ if (uri == _namespace_GVF1O("http://www.biointerchange.org/gvf1o#GVF1_0089")) {
652
770
  return true;
653
771
  }
654
- if (uri.equals(ResourceFactory.createResource("http://www.biointerchange.org/gvf1o#GVF1_0078"))) {
772
+ if (uri == _namespace_GVF1O("http://www.biointerchange.org/gvf1o#GVF1_0090")) {
655
773
  return true;
656
774
  }
657
- if (uri.equals(ResourceFactory.createResource("http://www.biointerchange.org/gvf1o#GVF1_0079"))) {
775
+ if (uri == _namespace_GVF1O("http://www.biointerchange.org/gvf1o#GVF1_0091")) {
658
776
  return true;
659
777
  }
660
778
  return false;
@@ -666,121 +784,136 @@ public class GVF1O {
666
784
  * @param uri URI that is tested for being a datatype property
667
785
  */
668
786
  public static boolean isDatatypeProperty(Resource uri) {
669
- if (uri.equals(ResourceFactory.createResource("http://www.biointerchange.org/gvf1o#GVF1_0004"))) {
787
+ if (uri == _namespace_GVF1O("http://www.biointerchange.org/gvf1o#GVF1_0004")) {
788
+ return true;
789
+ }
790
+ if (uri == _namespace_GVF1O("http://www.biointerchange.org/gvf1o#GVF1_0005")) {
791
+ return true;
792
+ }
793
+ if (uri == _namespace_GVF1O("http://www.biointerchange.org/gvf1o#GVF1_0006")) {
794
+ return true;
795
+ }
796
+ if (uri == _namespace_GVF1O("http://www.biointerchange.org/gvf1o#GVF1_0007")) {
670
797
  return true;
671
798
  }
672
- if (uri.equals(ResourceFactory.createResource("http://www.biointerchange.org/gvf1o#GVF1_0005"))) {
799
+ if (uri == _namespace_GVF1O("http://www.biointerchange.org/gvf1o#GVF1_0008")) {
673
800
  return true;
674
801
  }
675
- if (uri.equals(ResourceFactory.createResource("http://www.biointerchange.org/gvf1o#GVF1_0006"))) {
802
+ if (uri == _namespace_GVF1O("http://www.biointerchange.org/gvf1o#GVF1_0009")) {
676
803
  return true;
677
804
  }
678
- if (uri.equals(ResourceFactory.createResource("http://www.biointerchange.org/gvf1o#GVF1_0007"))) {
805
+ if (uri == _namespace_GVF1O("http://www.biointerchange.org/gvf1o#GVF1_0013")) {
679
806
  return true;
680
807
  }
681
- if (uri.equals(ResourceFactory.createResource("http://www.biointerchange.org/gvf1o#GVF1_0008"))) {
808
+ if (uri == _namespace_GVF1O("http://www.biointerchange.org/gvf1o#GVF1_0022")) {
682
809
  return true;
683
810
  }
684
- if (uri.equals(ResourceFactory.createResource("http://www.biointerchange.org/gvf1o#GVF1_0009"))) {
811
+ if (uri == _namespace_GVF1O("http://www.biointerchange.org/gvf1o#GVF1_0024")) {
685
812
  return true;
686
813
  }
687
- if (uri.equals(ResourceFactory.createResource("http://www.biointerchange.org/gvf1o#GVF1_0013"))) {
814
+ if (uri == _namespace_GVF1O("http://www.biointerchange.org/gvf1o#GVF1_0025")) {
688
815
  return true;
689
816
  }
690
- if (uri.equals(ResourceFactory.createResource("http://www.biointerchange.org/gvf1o#GVF1_0022"))) {
817
+ if (uri == _namespace_GVF1O("http://www.biointerchange.org/gvf1o#GVF1_0026")) {
691
818
  return true;
692
819
  }
693
- if (uri.equals(ResourceFactory.createResource("http://www.biointerchange.org/gvf1o#GVF1_0024"))) {
820
+ if (uri == _namespace_GVF1O("http://www.biointerchange.org/gvf1o#GVF1_0027")) {
694
821
  return true;
695
822
  }
696
- if (uri.equals(ResourceFactory.createResource("http://www.biointerchange.org/gvf1o#GVF1_0025"))) {
823
+ if (uri == _namespace_GVF1O("http://www.biointerchange.org/gvf1o#GVF1_0029")) {
697
824
  return true;
698
825
  }
699
- if (uri.equals(ResourceFactory.createResource("http://www.biointerchange.org/gvf1o#GVF1_0026"))) {
826
+ if (uri == _namespace_GVF1O("http://www.biointerchange.org/gvf1o#GVF1_0030")) {
700
827
  return true;
701
828
  }
702
- if (uri.equals(ResourceFactory.createResource("http://www.biointerchange.org/gvf1o#GVF1_0027"))) {
829
+ if (uri == _namespace_GVF1O("http://www.biointerchange.org/gvf1o#GVF1_0031")) {
703
830
  return true;
704
831
  }
705
- if (uri.equals(ResourceFactory.createResource("http://www.biointerchange.org/gvf1o#GVF1_0029"))) {
832
+ if (uri == _namespace_GVF1O("http://www.biointerchange.org/gvf1o#GVF1_0032")) {
706
833
  return true;
707
834
  }
708
- if (uri.equals(ResourceFactory.createResource("http://www.biointerchange.org/gvf1o#GVF1_0030"))) {
835
+ if (uri == _namespace_GVF1O("http://www.biointerchange.org/gvf1o#GVF1_0037")) {
709
836
  return true;
710
837
  }
711
- if (uri.equals(ResourceFactory.createResource("http://www.biointerchange.org/gvf1o#GVF1_0031"))) {
838
+ if (uri == _namespace_GVF1O("http://www.biointerchange.org/gvf1o#GVF1_0039")) {
712
839
  return true;
713
840
  }
714
- if (uri.equals(ResourceFactory.createResource("http://www.biointerchange.org/gvf1o#GVF1_0032"))) {
841
+ if (uri == _namespace_GVF1O("http://www.biointerchange.org/gvf1o#GVF1_0048")) {
715
842
  return true;
716
843
  }
717
- if (uri.equals(ResourceFactory.createResource("http://www.biointerchange.org/gvf1o#GVF1_0037"))) {
844
+ if (uri == _namespace_GVF1O("http://www.biointerchange.org/gvf1o#GVF1_0049")) {
718
845
  return true;
719
846
  }
720
- if (uri.equals(ResourceFactory.createResource("http://www.biointerchange.org/gvf1o#GVF1_0038"))) {
847
+ if (uri == _namespace_GVF1O("http://www.biointerchange.org/gvf1o#GVF1_0050")) {
721
848
  return true;
722
849
  }
723
- if (uri.equals(ResourceFactory.createResource("http://www.biointerchange.org/gvf1o#GVF1_0039"))) {
850
+ if (uri == _namespace_GVF1O("http://www.biointerchange.org/gvf1o#GVF1_0054")) {
724
851
  return true;
725
852
  }
726
- if (uri.equals(ResourceFactory.createResource("http://www.biointerchange.org/gvf1o#GVF1_0048"))) {
853
+ if (uri == _namespace_GVF1O("http://www.biointerchange.org/gvf1o#GVF1_0055")) {
727
854
  return true;
728
855
  }
729
- if (uri.equals(ResourceFactory.createResource("http://www.biointerchange.org/gvf1o#GVF1_0049"))) {
856
+ if (uri == _namespace_GVF1O("http://www.biointerchange.org/gvf1o#GVF1_0056")) {
730
857
  return true;
731
858
  }
732
- if (uri.equals(ResourceFactory.createResource("http://www.biointerchange.org/gvf1o#GVF1_0050"))) {
859
+ if (uri == _namespace_GVF1O("http://www.biointerchange.org/gvf1o#GVF1_0057")) {
733
860
  return true;
734
861
  }
735
- if (uri.equals(ResourceFactory.createResource("http://www.biointerchange.org/gvf1o#GVF1_0054"))) {
862
+ if (uri == _namespace_GVF1O("http://www.biointerchange.org/gvf1o#GVF1_0059")) {
736
863
  return true;
737
864
  }
738
- if (uri.equals(ResourceFactory.createResource("http://www.biointerchange.org/gvf1o#GVF1_0055"))) {
865
+ if (uri == _namespace_GVF1O("http://www.biointerchange.org/gvf1o#GVF1_0060")) {
739
866
  return true;
740
867
  }
741
- if (uri.equals(ResourceFactory.createResource("http://www.biointerchange.org/gvf1o#GVF1_0056"))) {
868
+ if (uri == _namespace_GVF1O("http://www.biointerchange.org/gvf1o#GVF1_0061")) {
742
869
  return true;
743
870
  }
744
- if (uri.equals(ResourceFactory.createResource("http://www.biointerchange.org/gvf1o#GVF1_0057"))) {
871
+ if (uri == _namespace_GVF1O("http://www.biointerchange.org/gvf1o#GVF1_0062")) {
745
872
  return true;
746
873
  }
747
- if (uri.equals(ResourceFactory.createResource("http://www.biointerchange.org/gvf1o#GVF1_0059"))) {
874
+ if (uri == _namespace_GVF1O("http://www.biointerchange.org/gvf1o#GVF1_0063")) {
748
875
  return true;
749
876
  }
750
- if (uri.equals(ResourceFactory.createResource("http://www.biointerchange.org/gvf1o#GVF1_0060"))) {
877
+ if (uri == _namespace_GVF1O("http://www.biointerchange.org/gvf1o#GVF1_0064")) {
751
878
  return true;
752
879
  }
753
- if (uri.equals(ResourceFactory.createResource("http://www.biointerchange.org/gvf1o#GVF1_0061"))) {
880
+ if (uri == _namespace_GVF1O("http://www.biointerchange.org/gvf1o#GVF1_0065")) {
754
881
  return true;
755
882
  }
756
- if (uri.equals(ResourceFactory.createResource("http://www.biointerchange.org/gvf1o#GVF1_0062"))) {
883
+ if (uri == _namespace_GVF1O("http://www.biointerchange.org/gvf1o#GVF1_0071")) {
757
884
  return true;
758
885
  }
759
- if (uri.equals(ResourceFactory.createResource("http://www.biointerchange.org/gvf1o#GVF1_0063"))) {
886
+ if (uri == _namespace_GVF1O("http://www.biointerchange.org/gvf1o#GVF1_0072")) {
760
887
  return true;
761
888
  }
762
- if (uri.equals(ResourceFactory.createResource("http://www.biointerchange.org/gvf1o#GVF1_0064"))) {
889
+ if (uri == _namespace_GVF1O("http://www.biointerchange.org/gvf1o#GVF1_0073")) {
763
890
  return true;
764
891
  }
765
- if (uri.equals(ResourceFactory.createResource("http://www.biointerchange.org/gvf1o#GVF1_0065"))) {
892
+ if (uri == _namespace_GVF1O("http://www.biointerchange.org/gvf1o#GVF1_0074")) {
766
893
  return true;
767
894
  }
768
- if (uri.equals(ResourceFactory.createResource("http://www.biointerchange.org/gvf1o#GVF1_0071"))) {
895
+ if (uri == _namespace_GVF1O("http://www.biointerchange.org/gvf1o#GVF1_0076")) {
769
896
  return true;
770
897
  }
771
- if (uri.equals(ResourceFactory.createResource("http://www.biointerchange.org/gvf1o#GVF1_0072"))) {
898
+ if (uri == _namespace_GVF1O("http://www.biointerchange.org/gvf1o#GVF1_0077")) {
772
899
  return true;
773
900
  }
774
- if (uri.equals(ResourceFactory.createResource("http://www.biointerchange.org/gvf1o#GVF1_0073"))) {
901
+ if (uri == _namespace_GVF1O("http://www.biointerchange.org/gvf1o#GVF1_0081")) {
775
902
  return true;
776
903
  }
777
- if (uri.equals(ResourceFactory.createResource("http://www.biointerchange.org/gvf1o#GVF1_0074"))) {
904
+ if (uri == _namespace_GVF1O("http://www.biointerchange.org/gvf1o#GVF1_0082")) {
778
905
  return true;
779
906
  }
780
- if (uri.equals(ResourceFactory.createResource("http://www.biointerchange.org/gvf1o#GVF1_0076"))) {
907
+ if (uri == _namespace_GVF1O("http://www.biointerchange.org/gvf1o#GVF1_0092")) {
781
908
  return true;
782
909
  }
783
- if (uri.equals(ResourceFactory.createResource("http://www.biointerchange.org/gvf1o#GVF1_0077"))) {
910
+ if (uri == _namespace_GVF1O("http://www.biointerchange.org/gvf1o#GVF1_0093")) {
911
+ return true;
912
+ }
913
+ if (uri == _namespace_GVF1O("http://www.biointerchange.org/gvf1o#GVF1_0094")) {
914
+ return true;
915
+ }
916
+ if (uri == _namespace_GVF1O("http://www.biointerchange.org/gvf1o#GVF1_0095")) {
784
917
  return true;
785
918
  }
786
919
  return false;
@@ -792,37 +925,43 @@ public class GVF1O {
792
925
  * @param uri URI that is tested for being a class
793
926
  */
794
927
  public static boolean isClass(Resource uri) {
795
- if (uri.equals(ResourceFactory.createResource("http://www.biointerchange.org/gvf1o#GVF1_0001"))) {
928
+ if (uri == _namespace_GVF1O("http://www.biointerchange.org/gvf1o#GVF1_0001")) {
929
+ return true;
930
+ }
931
+ if (uri == _namespace_GVF1O("http://www.biointerchange.org/gvf1o#GVF1_0002")) {
796
932
  return true;
797
933
  }
798
- if (uri.equals(ResourceFactory.createResource("http://www.biointerchange.org/gvf1o#GVF1_0002"))) {
934
+ if (uri == _namespace_GVF1O("http://www.biointerchange.org/gvf1o#GVF1_0003")) {
799
935
  return true;
800
936
  }
801
- if (uri.equals(ResourceFactory.createResource("http://www.biointerchange.org/gvf1o#GVF1_0003"))) {
937
+ if (uri == _namespace_GVF1O("http://www.biointerchange.org/gvf1o#GVF1_0016")) {
802
938
  return true;
803
939
  }
804
- if (uri.equals(ResourceFactory.createResource("http://www.biointerchange.org/gvf1o#GVF1_0016"))) {
940
+ if (uri == _namespace_GVF1O("http://www.biointerchange.org/gvf1o#GVF1_0028")) {
805
941
  return true;
806
942
  }
807
- if (uri.equals(ResourceFactory.createResource("http://www.biointerchange.org/gvf1o#GVF1_0028"))) {
943
+ if (uri == _namespace_GVF1O("http://www.biointerchange.org/gvf1o#GVF1_0033")) {
808
944
  return true;
809
945
  }
810
- if (uri.equals(ResourceFactory.createResource("http://www.biointerchange.org/gvf1o#GVF1_0033"))) {
946
+ if (uri == _namespace_GVF1O("http://www.biointerchange.org/gvf1o#GVF1_0035")) {
811
947
  return true;
812
948
  }
813
- if (uri.equals(ResourceFactory.createResource("http://www.biointerchange.org/gvf1o#GVF1_0035"))) {
949
+ if (uri == _namespace_GVF1O("http://www.biointerchange.org/gvf1o#GVF1_0040")) {
814
950
  return true;
815
951
  }
816
- if (uri.equals(ResourceFactory.createResource("http://www.biointerchange.org/gvf1o#GVF1_0040"))) {
952
+ if (uri == _namespace_GVF1O("http://www.biointerchange.org/gvf1o#GVF1_0045")) {
817
953
  return true;
818
954
  }
819
- if (uri.equals(ResourceFactory.createResource("http://www.biointerchange.org/gvf1o#GVF1_0045"))) {
955
+ if (uri == _namespace_GVF1O("http://www.biointerchange.org/gvf1o#GVF1_0052")) {
820
956
  return true;
821
957
  }
822
- if (uri.equals(ResourceFactory.createResource("http://www.biointerchange.org/gvf1o#GVF1_0052"))) {
958
+ if (uri == _namespace_GVF1O("http://www.biointerchange.org/gvf1o#GVF1_0058")) {
823
959
  return true;
824
960
  }
825
- if (uri.equals(ResourceFactory.createResource("http://www.biointerchange.org/gvf1o#GVF1_0058"))) {
961
+ if (uri == _namespace_GVF1O("http://www.biointerchange.org/gvf1o#GVF1_0084")) {
962
+ return true;
963
+ }
964
+ if (uri == _namespace_GVF1O("http://www.biointerchange.org/gvf1o#GVF1_0088")) {
826
965
  return true;
827
966
  }
828
967
  return false;
@@ -834,16 +973,25 @@ public class GVF1O {
834
973
  * @param uri URI that is tested for being a named individual
835
974
  */
836
975
  public static boolean isNamedIndividual(Resource uri) {
837
- if (uri.equals(ResourceFactory.createResource("http://www.biointerchange.org/gvf1o#GVF1_0017"))) {
976
+ if (uri == _namespace_GVF1O("http://www.biointerchange.org/gvf1o#GVF1_0017")) {
977
+ return true;
978
+ }
979
+ if (uri == _namespace_GVF1O("http://www.biointerchange.org/gvf1o#GVF1_0018")) {
980
+ return true;
981
+ }
982
+ if (uri == _namespace_GVF1O("http://www.biointerchange.org/gvf1o#GVF1_0019")) {
983
+ return true;
984
+ }
985
+ if (uri == _namespace_GVF1O("http://www.biointerchange.org/gvf1o#GVF1_0020")) {
838
986
  return true;
839
987
  }
840
- if (uri.equals(ResourceFactory.createResource("http://www.biointerchange.org/gvf1o#GVF1_0018"))) {
988
+ if (uri == _namespace_GVF1O("http://www.biointerchange.org/gvf1o#GVF1_0085")) {
841
989
  return true;
842
990
  }
843
- if (uri.equals(ResourceFactory.createResource("http://www.biointerchange.org/gvf1o#GVF1_0019"))) {
991
+ if (uri == _namespace_GVF1O("http://www.biointerchange.org/gvf1o#GVF1_0086")) {
844
992
  return true;
845
993
  }
846
- if (uri.equals(ResourceFactory.createResource("http://www.biointerchange.org/gvf1o#GVF1_0020"))) {
994
+ if (uri == _namespace_GVF1O("http://www.biointerchange.org/gvf1o#GVF1_0087")) {
847
995
  return true;
848
996
  }
849
997
  return false;
@@ -867,7 +1015,7 @@ public class GVF1O {
867
1015
  */
868
1016
  public static boolean hasParent(Resource uri, Resource parent) {
869
1017
  if (__parent_properties.containsKey(uri)) {
870
- if (__parent_properties.get(uri).equals(parent)) {
1018
+ if (__parent_properties.get(uri) == parent) {
871
1019
  return true;
872
1020
  }
873
1021
  return hasParent((Resource)__parent_properties.get(uri), parent);
@@ -889,55 +1037,6 @@ public class GVF1O {
889
1037
  private static Map<Resource, Resource> _init___parent_properties() {
890
1038
  Map<Resource, Resource> map = new HashMap<Resource, Resource>();
891
1039
 
892
- map.put(ResourceFactory.createResource("http://www.biointerchange.org/gvf1o#GVF1_0031"), ResourceFactory.createResource("http://www.biointerchange.org/gvf1o#GVF1_0059"));
893
- map.put(ResourceFactory.createResource("http://www.biointerchange.org/gvf1o#GVF1_0009"), ResourceFactory.createResource("http://www.biointerchange.org/gvf1o#GVF1_0059"));
894
- map.put(ResourceFactory.createResource("http://www.biointerchange.org/gvf1o#GVF1_0053"), ResourceFactory.createResource("http://www.biointerchange.org/gvf1o#GVF1_0069"));
895
- map.put(ResourceFactory.createResource("http://www.biointerchange.org/gvf1o#GVF1_0042"), ResourceFactory.createResource("http://www.biointerchange.org/gvf1o#GVF1_0070"));
896
- map.put(ResourceFactory.createResource("http://www.biointerchange.org/gvf1o#GVF1_0076"), ResourceFactory.createResource("http://www.biointerchange.org/gvf1o#GVF1_0059"));
897
- map.put(ResourceFactory.createResource("http://www.biointerchange.org/gvf1o#GVF1_0054"), ResourceFactory.createResource("http://www.biointerchange.org/gvf1o#GVF1_0060"));
898
- map.put(ResourceFactory.createResource("http://www.biointerchange.org/gvf1o#GVF1_0032"), ResourceFactory.createResource("http://www.biointerchange.org/gvf1o#GVF1_0060"));
899
- map.put(ResourceFactory.createResource("http://www.biointerchange.org/gvf1o#GVF1_0043"), ResourceFactory.createResource("http://www.biointerchange.org/gvf1o#GVF1_0070"));
900
- map.put(ResourceFactory.createResource("http://www.biointerchange.org/gvf1o#GVF1_0021"), ResourceFactory.createResource("http://www.biointerchange.org/gvf1o#GVF1_0066"));
901
- map.put(ResourceFactory.createResource("http://www.biointerchange.org/gvf1o#GVF1_0010"), ResourceFactory.createResource("http://www.biointerchange.org/gvf1o#GVF1_0075"));
902
- map.put(ResourceFactory.createResource("http://www.biointerchange.org/gvf1o#GVF1_0077"), ResourceFactory.createResource("http://www.biointerchange.org/gvf1o#GVF1_0059"));
903
- map.put(ResourceFactory.createResource("http://www.biointerchange.org/gvf1o#GVF1_0055"), ResourceFactory.createResource("http://www.biointerchange.org/gvf1o#GVF1_0060"));
904
- map.put(ResourceFactory.createResource("http://www.biointerchange.org/gvf1o#GVF1_0022"), ResourceFactory.createResource("http://www.biointerchange.org/gvf1o#GVF1_0063"));
905
- map.put(ResourceFactory.createResource("http://www.biointerchange.org/gvf1o#GVF1_0044"), ResourceFactory.createResource("http://www.biointerchange.org/gvf1o#GVF1_0070"));
906
- map.put(ResourceFactory.createResource("http://www.biointerchange.org/gvf1o#GVF1_0056"), ResourceFactory.createResource("http://www.biointerchange.org/gvf1o#GVF1_0060"));
907
- map.put(ResourceFactory.createResource("http://www.biointerchange.org/gvf1o#GVF1_0078"), ResourceFactory.createResource("http://www.biointerchange.org/gvf1o#GVF1_0066"));
908
- map.put(ResourceFactory.createResource("http://www.biointerchange.org/gvf1o#GVF1_0034"), ResourceFactory.createResource("http://www.biointerchange.org/gvf1o#GVF1_0066"));
909
- map.put(ResourceFactory.createResource("http://www.biointerchange.org/gvf1o#GVF1_0023"), ResourceFactory.createResource("http://www.biointerchange.org/gvf1o#GVF1_0068"));
910
- map.put(ResourceFactory.createResource("http://www.biointerchange.org/gvf1o#GVF1_0012"), ResourceFactory.createResource("http://www.biointerchange.org/gvf1o#GVF1_0066"));
911
- map.put(ResourceFactory.createResource("http://www.biointerchange.org/gvf1o#GVF1_0057"), ResourceFactory.createResource("http://www.biointerchange.org/gvf1o#GVF1_0060"));
912
- map.put(ResourceFactory.createResource("http://www.biointerchange.org/gvf1o#GVF1_0024"), ResourceFactory.createResource("http://www.biointerchange.org/gvf1o#GVF1_0063"));
913
- map.put(ResourceFactory.createResource("http://www.biointerchange.org/gvf1o#GVF1_0013"), ResourceFactory.createResource("http://www.biointerchange.org/gvf1o#GVF1_0064"));
914
- map.put(ResourceFactory.createResource("http://www.biointerchange.org/gvf1o#GVF1_0079"), ResourceFactory.createResource("http://www.biointerchange.org/gvf1o#GVF1_0075"));
915
- map.put(ResourceFactory.createResource("http://www.biointerchange.org/gvf1o#GVF1_0046"), ResourceFactory.createResource("http://www.biointerchange.org/gvf1o#GVF1_0070"));
916
- map.put(ResourceFactory.createResource("http://www.biointerchange.org/gvf1o#GVF1_0025"), ResourceFactory.createResource("http://www.biointerchange.org/gvf1o#GVF1_0060"));
917
- map.put(ResourceFactory.createResource("http://www.biointerchange.org/gvf1o#GVF1_0047"), ResourceFactory.createResource("http://www.biointerchange.org/gvf1o#GVF1_0070"));
918
- map.put(ResourceFactory.createResource("http://www.biointerchange.org/gvf1o#GVF1_0036"), ResourceFactory.createResource("http://www.biointerchange.org/gvf1o#GVF1_0066"));
919
- map.put(ResourceFactory.createResource("http://www.biointerchange.org/gvf1o#GVF1_0014"), ResourceFactory.createResource("http://www.biointerchange.org/gvf1o#GVF1_0066"));
920
- map.put(ResourceFactory.createResource("http://www.biointerchange.org/gvf1o#GVF1_0048"), ResourceFactory.createResource("http://www.biointerchange.org/gvf1o#GVF1_0061"));
921
- map.put(ResourceFactory.createResource("http://www.biointerchange.org/gvf1o#GVF1_0037"), ResourceFactory.createResource("http://www.biointerchange.org/gvf1o#GVF1_0065"));
922
- map.put(ResourceFactory.createResource("http://www.biointerchange.org/gvf1o#GVF1_0026"), ResourceFactory.createResource("http://www.biointerchange.org/gvf1o#GVF1_0059"));
923
- map.put(ResourceFactory.createResource("http://www.biointerchange.org/gvf1o#GVF1_0004"), ResourceFactory.createResource("http://www.biointerchange.org/gvf1o#GVF1_0059"));
924
- map.put(ResourceFactory.createResource("http://www.biointerchange.org/gvf1o#GVF1_0015"), ResourceFactory.createResource("http://www.biointerchange.org/gvf1o#GVF1_0068"));
925
- map.put(ResourceFactory.createResource("http://www.biointerchange.org/gvf1o#GVF1_0049"), ResourceFactory.createResource("http://www.biointerchange.org/gvf1o#GVF1_0061"));
926
- map.put(ResourceFactory.createResource("http://www.biointerchange.org/gvf1o#GVF1_0038"), ResourceFactory.createResource("http://www.biointerchange.org/gvf1o#GVF1_0059"));
927
- map.put(ResourceFactory.createResource("http://www.biointerchange.org/gvf1o#GVF1_0027"), ResourceFactory.createResource("http://www.biointerchange.org/gvf1o#GVF1_0059"));
928
- map.put(ResourceFactory.createResource("http://www.biointerchange.org/gvf1o#GVF1_0005"), ResourceFactory.createResource("http://www.biointerchange.org/gvf1o#GVF1_0059"));
929
- map.put(ResourceFactory.createResource("http://www.biointerchange.org/gvf1o#GVF1_0072"), ResourceFactory.createResource("http://www.biointerchange.org/gvf1o#GVF1_0071"));
930
- map.put(ResourceFactory.createResource("http://www.biointerchange.org/gvf1o#GVF1_0050"), ResourceFactory.createResource("http://www.biointerchange.org/gvf1o#GVF1_0060"));
931
- map.put(ResourceFactory.createResource("http://www.biointerchange.org/gvf1o#GVF1_0039"), ResourceFactory.createResource("http://www.biointerchange.org/gvf1o#GVF1_0060"));
932
- map.put(ResourceFactory.createResource("http://www.biointerchange.org/gvf1o#GVF1_0006"), ResourceFactory.createResource("http://www.biointerchange.org/gvf1o#GVF1_0059"));
933
- map.put(ResourceFactory.createResource("http://www.biointerchange.org/gvf1o#GVF1_0073"), ResourceFactory.createResource("http://www.biointerchange.org/gvf1o#GVF1_0071"));
934
- map.put(ResourceFactory.createResource("http://www.biointerchange.org/gvf1o#GVF1_0029"), ResourceFactory.createResource("http://www.biointerchange.org/gvf1o#GVF1_0062"));
935
- map.put(ResourceFactory.createResource("http://www.biointerchange.org/gvf1o#GVF1_0007"), ResourceFactory.createResource("http://www.biointerchange.org/gvf1o#GVF1_0059"));
936
- map.put(ResourceFactory.createResource("http://www.biointerchange.org/gvf1o#GVF1_0051"), ResourceFactory.createResource("http://www.biointerchange.org/gvf1o#GVF1_0067"));
937
- map.put(ResourceFactory.createResource("http://www.biointerchange.org/gvf1o#GVF1_0074"), ResourceFactory.createResource("http://www.biointerchange.org/gvf1o#GVF1_0071"));
938
- map.put(ResourceFactory.createResource("http://www.biointerchange.org/gvf1o#GVF1_0030"), ResourceFactory.createResource("http://www.biointerchange.org/gvf1o#GVF1_0062"));
939
- map.put(ResourceFactory.createResource("http://www.biointerchange.org/gvf1o#GVF1_0008"), ResourceFactory.createResource("http://www.biointerchange.org/gvf1o#GVF1_0059"));
940
- map.put(ResourceFactory.createResource("http://www.biointerchange.org/gvf1o#GVF1_0041"), ResourceFactory.createResource("http://www.biointerchange.org/gvf1o#GVF1_0069"));
941
1040
 
942
1041
  return map;
943
1042
  }