biointerchange 0.1.3 → 0.2.0

data/supplemental/python/setup.py

@@ -2,7 +2,7 @@ from setuptools import setup, find_packages
  
 setup(
     name = "biointerchange",
-    version = "0.1.2",
+    version = "0.1.3",
     author = "Joachim Baran, Geraint Duck",
     description = ( "Wrapper for easy access to GFF3O, GVF1O, SIO and SOFA.",
                     "Part of the BioInterchange project." ),

data/web/ontologies.html

@@ -71,16 +71,14 @@
           <h2>Ontologies</h2>
           <p>BioInterchange makes use of external ontologies, i.e. ontologies that were developed outside the scope of the BioInterchange project, and ontologies that we designed and implemented for specific file format conversion purposes. We are always happy to hear about ontologies that we should consider incorporating into BioInterchange and contributions of ontologies that permit including more file formats for RDF conversion are most welcome.</p>
           <h3>BioInterchange Ontologies</h3>
-          Ontologies specifically designed and implemented for BioInterchange are available via their <a href="http://biointerchange.github.com/Ontologies">GitHub project pages</a>.
+          Some ontologies have been specifically designed and implemented for BioInterchange and are freely available via the <a href="http://creativecommons.org/licenses/by-sa/3.0/">Creative Commons Attribution Share-Alike</a> (<a href="http://creativecommons.org/licenses/by-sa/3.0/">CC BY-SA</a>) license. The listing below gives an overview of the ontologies we created, where more information about them is available on their <a href="http://biointerchange.github.com/Ontologies">GitHub project pages</a>.
           <h4>Generic Feature Format Version 3 Ontology</h4>
           <p>The Generic Feature Format Version 3 Ontology (GFF3O) has been closely modelled on the <a href="http://www.sequenceontology.org/resources/gff3.html">Generic Feature Format Version 3</a> (GFF3) specification.</p>
-          <p><i>A more detailed description has yet to be written...</i></p>
           <ul>
             <li><a href="http://biointerchange.github.com/Ontologies">Generic Feature Format Version 3 Ontology</a> (GFF3O)</li>
           </ul>
           <h4>Genome Variation Format Version 1 Ontology</h4>
           <p>The Genome Variation Format Version 1 Ontology (GVF1O) has been closely modelled on the <a href="http://www.sequenceontology.org/resources/gvf.html">Genomic Variation Format</a> (GVF) specification.</p>
-          <p><i>A more detailed description has yet to be written...</i></p>
           <ul>
             <li><a href="http://biointerchange.github.com/Ontologies">Genome Variation Format Version 1 Ontology</a> (GVF1O)</li>
           </ul>

metadata

@@ -1,7 +1,7 @@
 --- !ruby/object:Gem::Specification
 name: biointerchange
 version: !ruby/object:Gem::Version
-  version: 0.1.3
+  version: 0.2.0
   prerelease: 
 platform: ruby
 authors:
@@ -13,7 +13,7 @@ authors:
 autorequire: 
 bindir: bin
 cert_chain: []
-date: 2013-01-05 00:00:00.000000000 Z
+date: 2013-02-22 00:00:00.000000000 Z
 dependencies:
 - !ruby/object:Gem::Dependency
   name: rdf
@@ -186,6 +186,7 @@ files:
 - examples/pubannotation.10096561.json.old
 - examples/pubannotation.2626671.json
 - examples/vocabulary.rb
+- generators/GOxrefify.rb
 - generators/javaify.rb
 - generators/pythonify.rb
 - generators/rdfxml.rb
@@ -202,6 +203,7 @@ files:
 - lib/biointerchange/genomics/gvf_pragmas.rb
 - lib/biointerchange/genomics/gvf_reader.rb
 - lib/biointerchange/gff3o.rb
+- lib/biointerchange/goxref.rb
 - lib/biointerchange/gvf1o.rb
 - lib/biointerchange/reader.rb
 - lib/biointerchange/registry.rb
@@ -269,6 +271,9 @@ required_ruby_version: !ruby/object:Gem::Requirement
   - - ! '>='
     - !ruby/object:Gem::Version
       version: '0'
+      segments:
+      - 0
+      hash: 166919419031906547
 required_rubygems_version: !ruby/object:Gem::Requirement
   none: false
   requirements: