bio-ucsc-api 0.0.4 → 0.0.5

data/spec/hg18/wgencodeyalechipseqpeaksk562pol2v2_spec.rb

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+require 'bio-ucsc'
+describe "Bio::Ucsc::Hg18::WgEncodeYaleChIPseqPeaksK562Pol2V2" do 
+
+  describe "#find_by_interval" do
+    context "given range chr1:1-1,000,000" do
+      it 'returns a record (r.chrom == "chr1")' do
+        Bio::Ucsc::Hg18::DBConnection.default
+        Bio::Ucsc::Hg18::DBConnection.connect
+        i = Bio::GenomicInterval.parse("chr1:1-1,000,000")
+        r = Bio::Ucsc::Hg18::WgEncodeYaleChIPseqPeaksK562Pol2V2.find_by_interval(i)
+        r.chrom.should == "chr1"
+      end
+    end
+  end
+
+end

data/spec/hg18/wgencodeyalechipseqpeaksk562pol3_spec.rb

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+require 'bio-ucsc'
+describe "Bio::Ucsc::Hg18::WgEncodeYaleChIPseqPeaksK562Pol3" do 
+
+  describe "#find_by_interval" do
+    context "given range chr1:1-1,000,000" do
+      it 'returns a record (r.chrom == "chr1")' do
+        Bio::Ucsc::Hg18::DBConnection.default
+        Bio::Ucsc::Hg18::DBConnection.connect
+        i = Bio::GenomicInterval.parse("chr1:1-1,000,000")
+        r = Bio::Ucsc::Hg18::WgEncodeYaleChIPseqPeaksK562Pol3.find_by_interval(i)
+        r.chrom.should == "chr1"
+      end
+    end
+  end
+
+end

data/spec/hg18/wgencodeyalechipseqpeaksk562rad21_spec.rb

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+require 'bio-ucsc'
+describe "Bio::Ucsc::Hg18::WgEncodeYaleChIPseqPeaksK562Rad21" do 
+
+  describe "#find_by_interval" do
+    context "given range chr1:1-1,000,000" do
+      it 'returns a record (r.chrom == "chr1")' do
+        Bio::Ucsc::Hg18::DBConnection.default
+        Bio::Ucsc::Hg18::DBConnection.connect
+        i = Bio::GenomicInterval.parse("chr1:1-1,000,000")
+        r = Bio::Ucsc::Hg18::WgEncodeYaleChIPseqPeaksK562Rad21.find_by_interval(i)
+        r.chrom.should == "chr1"
+      end
+    end
+  end
+
+end

data/spec/hg18/wgencodeyalechipseqpeaksk562rpc155_spec.rb

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+require 'bio-ucsc'
+describe "Bio::Ucsc::Hg18::WgEncodeYaleChIPseqPeaksK562Rpc155" do 
+
+  describe "#find_by_interval" do
+    context "given range chr1:1-20,000,000" do
+      it 'returns a record (r.chrom == "chr1")' do
+        Bio::Ucsc::Hg18::DBConnection.default
+        Bio::Ucsc::Hg18::DBConnection.connect
+        i = Bio::GenomicInterval.parse("chr1:1-20,000,000")
+        r = Bio::Ucsc::Hg18::WgEncodeYaleChIPseqPeaksK562Rpc155.find_by_interval(i)
+        r.chrom.should == "chr1"
+      end
+    end
+  end
+
+end

data/spec/hg18/wgencodeyalechipseqpeaksk562sirt6_spec.rb

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+require 'bio-ucsc'
+describe "Bio::Ucsc::Hg18::WgEncodeYaleChIPseqPeaksK562Sirt6" do 
+
+  describe "#find_by_interval" do
+    context "given range chr1:1-1,000,000" do
+      it 'returns a record (r.chrom == "chr1")' do
+        Bio::Ucsc::Hg18::DBConnection.default
+        Bio::Ucsc::Hg18::DBConnection.connect
+        i = Bio::GenomicInterval.parse("chr1:1-1,000,000")
+        r = Bio::Ucsc::Hg18::WgEncodeYaleChIPseqPeaksK562Sirt6.find_by_interval(i)
+        r.chrom.should == "chr1"
+      end
+    end
+  end
+
+end

data/spec/hg18/wgencodeyalechipseqpeaksk562stat1ifng30_spec.rb

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+require 'bio-ucsc'
+describe "Bio::Ucsc::Hg18::WgEncodeYaleChIPseqPeaksK562Stat1Ifng30" do 
+
+  describe "#find_by_interval" do
+    context "given range chr1:1-1,000,000" do
+      it 'returns a record (r.chrom == "chr1")' do
+        Bio::Ucsc::Hg18::DBConnection.default
+        Bio::Ucsc::Hg18::DBConnection.connect
+        i = Bio::GenomicInterval.parse("chr1:1-1,000,000")
+        r = Bio::Ucsc::Hg18::WgEncodeYaleChIPseqPeaksK562Stat1Ifng30.find_by_interval(i)
+        r.chrom.should == "chr1"
+      end
+    end
+  end
+
+end

data/spec/hg18/wgencodeyalechipseqpeaksk562stat1ifng6h_spec.rb

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+require 'bio-ucsc'
+describe "Bio::Ucsc::Hg18::WgEncodeYaleChIPseqPeaksK562Stat1Ifng6h" do 
+
+  describe "#find_by_interval" do
+    context "given range chr1:1-1,000,000" do
+      it 'returns a record (r.chrom == "chr1")' do
+        Bio::Ucsc::Hg18::DBConnection.default
+        Bio::Ucsc::Hg18::DBConnection.connect
+        i = Bio::GenomicInterval.parse("chr1:1-1,000,000")
+        r = Bio::Ucsc::Hg18::WgEncodeYaleChIPseqPeaksK562Stat1Ifng6h.find_by_interval(i)
+        r.chrom.should == "chr1"
+      end
+    end
+  end
+
+end

data/spec/hg18/wgencodeyalechipseqpeaksk562tfiiic_spec.rb

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+require 'bio-ucsc'
+describe "Bio::Ucsc::Hg18::WgEncodeYaleChIPseqPeaksK562Tfiiic" do 
+
+  describe "#find_by_interval" do
+    context "given range chr1:1-1,000,000" do
+      it 'returns a record (r.chrom == "chr1")' do
+        Bio::Ucsc::Hg18::DBConnection.default
+        Bio::Ucsc::Hg18::DBConnection.connect
+        i = Bio::GenomicInterval.parse("chr1:1-1,000,000")
+        r = Bio::Ucsc::Hg18::WgEncodeYaleChIPseqPeaksK562Tfiiic.find_by_interval(i)
+        r.chrom.should == "chr1"
+      end
+    end
+  end
+
+end

data/spec/hg18/wgencodeyalechipseqpeaksk562xrcc4_spec.rb

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+require 'bio-ucsc'
+describe "Bio::Ucsc::Hg18::WgEncodeYaleChIPseqPeaksK562Xrcc4" do 
+
+  describe "#find_by_interval" do
+    context "given range chr1:1-1,000,000" do
+      it 'returns a record (r.chrom == "chr1")' do
+        Bio::Ucsc::Hg18::DBConnection.default
+        Bio::Ucsc::Hg18::DBConnection.connect
+        i = Bio::GenomicInterval.parse("chr1:1-1,000,000")
+        r = Bio::Ucsc::Hg18::WgEncodeYaleChIPseqPeaksK562Xrcc4.find_by_interval(i)
+        r.chrom.should == "chr1"
+      end
+    end
+  end
+
+end

data/spec/hg18/wgencodeyalechipseqpeaksmcf7hae2f1_spec.rb

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+require 'bio-ucsc'
+describe "Bio::Ucsc::Hg18::WgEncodeYaleChIPseqPeaksMcf7Hae2f1" do 
+
+  describe "#find_by_interval" do
+    context "given range chr1:1-1,000,000" do
+      it 'returns a record (r.chrom == "chr1")' do
+        Bio::Ucsc::Hg18::DBConnection.default
+        Bio::Ucsc::Hg18::DBConnection.connect
+        i = Bio::GenomicInterval.parse("chr1:1-1,000,000")
+        r = Bio::Ucsc::Hg18::WgEncodeYaleChIPseqPeaksMcf7Hae2f1.find_by_interval(i)
+        r.chrom.should == "chr1"
+      end
+    end
+  end
+
+end

data/spec/hg18/wgencodeyalechipseqpeaksnb4pol2v2_spec.rb

@@ -0,0 +1,16 @@
+require 'bio-ucsc'
+describe "Bio::Ucsc::Hg18::WgEncodeYaleChIPseqPeaksNb4Pol2V2" do 
+
+  describe "#find_by_interval" do
+    context "given range chr1:1-1,000,000" do
+      it 'returns a record (r.chrom == "chr1")' do
+        Bio::Ucsc::Hg18::DBConnection.default
+        Bio::Ucsc::Hg18::DBConnection.connect
+        i = Bio::GenomicInterval.parse("chr1:1-1,000,000")
+        r = Bio::Ucsc::Hg18::WgEncodeYaleChIPseqPeaksNb4Pol2V2.find_by_interval(i)
+        r.chrom.should == "chr1"
+      end
+    end
+  end
+
+end

data/spec/hg18/wgencodeyalechipseqpeaksnt2d1suz12_spec.rb

@@ -0,0 +1,16 @@
+require 'bio-ucsc'
+describe "Bio::Ucsc::Hg18::WgEncodeYaleChIPseqPeaksNt2d1Suz12" do 
+
+  describe "#find_by_interval" do
+    context "given range chr1:1-1,000,000" do
+      it 'returns a record (r.chrom == "chr1")' do
+        Bio::Ucsc::Hg18::DBConnection.default
+        Bio::Ucsc::Hg18::DBConnection.connect
+        i = Bio::GenomicInterval.parse("chr1:1-1,000,000")
+        r = Bio::Ucsc::Hg18::WgEncodeYaleChIPseqPeaksNt2d1Suz12.find_by_interval(i)
+        r.chrom.should == "chr1"
+      end
+    end
+  end
+
+end

data/spec/hg18/wgencodeyalechipseqpeaksnt2d1yy1_spec.rb

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+require 'bio-ucsc'
+describe "Bio::Ucsc::Hg18::WgEncodeYaleChIPseqPeaksNt2d1Yy1" do 
+
+  describe "#find_by_interval" do
+    context "given range chr1:1-1,000,000" do
+      it 'returns a record (r.chrom == "chr1")' do
+        Bio::Ucsc::Hg18::DBConnection.default
+        Bio::Ucsc::Hg18::DBConnection.connect
+        i = Bio::GenomicInterval.parse("chr1:1-1,000,000")
+        r = Bio::Ucsc::Hg18::WgEncodeYaleChIPseqPeaksNt2d1Yy1.find_by_interval(i)
+        r.chrom.should == "chr1"
+      end
+    end
+  end
+
+end

data/spec/hg18/wgencodeyalechipseqrel2signalgm12878input_spec.rb

@@ -0,0 +1,16 @@
+require 'bio-ucsc'
+describe "Bio::Ucsc::Hg18::WgEncodeYaleChIPseqRel2SignalGm12878Input" do 
+
+  describe "#find_by_interval" do
+    context "given range chr1:1-1,000" do
+      it 'returns a record (r.chrom == "chr1")' do
+        Bio::Ucsc::Hg18::DBConnection.default
+        Bio::Ucsc::Hg18::DBConnection.connect
+        i = Bio::GenomicInterval.parse("chr1:1-1,000")
+        r = Bio::Ucsc::Hg18::WgEncodeYaleChIPseqRel2SignalGm12878Input.find_by_interval(i)
+        r.chrom.should == "chr1"
+      end
+    end
+  end
+
+end

data/spec/hg18/wgencodeyalechipseqrel2signalgm12878jund_spec.rb

@@ -0,0 +1,16 @@
+require 'bio-ucsc'
+describe "Bio::Ucsc::Hg18::WgEncodeYaleChIPseqRel2SignalGm12878Jund" do 
+
+  describe "#find_by_interval" do
+    context "given range chr1:1-1,000" do
+      it 'returns a record (r.chrom == "chr1")' do
+        Bio::Ucsc::Hg18::DBConnection.default
+        Bio::Ucsc::Hg18::DBConnection.connect
+        i = Bio::GenomicInterval.parse("chr1:1-1,000")
+        r = Bio::Ucsc::Hg18::WgEncodeYaleChIPseqRel2SignalGm12878Jund.find_by_interval(i)
+        r.chrom.should == "chr1"
+      end
+    end
+  end
+
+end

data/spec/hg18/wgencodeyalechipseqrel2signalhct116input_spec.rb

@@ -0,0 +1,16 @@
+require 'bio-ucsc'
+describe "Bio::Ucsc::Hg18::WgEncodeYaleChIPseqRel2SignalHct116Input" do 
+
+  describe "#find_by_interval" do
+    context "given range chr1:1-1,000" do
+      it 'returns a record (r.chrom == "chr1")' do
+        Bio::Ucsc::Hg18::DBConnection.default
+        Bio::Ucsc::Hg18::DBConnection.connect
+        i = Bio::GenomicInterval.parse("chr1:1-1,000")
+        r = Bio::Ucsc::Hg18::WgEncodeYaleChIPseqRel2SignalHct116Input.find_by_interval(i)
+        r.chrom.should == "chr1"
+      end
+    end
+  end
+
+end

data/spec/hg18/wgencodeyalechipseqrel2signalhct116tcf4_spec.rb

@@ -0,0 +1,16 @@
+require 'bio-ucsc'
+describe "Bio::Ucsc::Hg18::WgEncodeYaleChIPseqRel2SignalHct116Tcf4" do 
+
+  describe "#find_by_interval" do
+    context "given range chr1:1-1,000" do
+      it 'returns a record (r.chrom == "chr1")' do
+        Bio::Ucsc::Hg18::DBConnection.default
+        Bio::Ucsc::Hg18::DBConnection.connect
+        i = Bio::GenomicInterval.parse("chr1:1-1,000")
+        r = Bio::Ucsc::Hg18::WgEncodeYaleChIPseqRel2SignalHct116Tcf4.find_by_interval(i)
+        r.chrom.should == "chr1"
+      end
+    end
+  end
+
+end

data/spec/hg18/wgencodeyalechipseqrel2signalhek293input_spec.rb

@@ -0,0 +1,16 @@
+require 'bio-ucsc'
+describe "Bio::Ucsc::Hg18::WgEncodeYaleChIPseqRel2SignalHek293Input" do 
+
+  describe "#find_by_interval" do
+    context "given range chr1:1-1,000" do
+      it 'returns a record (r.chrom == "chr1")' do
+        Bio::Ucsc::Hg18::DBConnection.default
+        Bio::Ucsc::Hg18::DBConnection.connect
+        i = Bio::GenomicInterval.parse("chr1:1-1,000")
+        r = Bio::Ucsc::Hg18::WgEncodeYaleChIPseqRel2SignalHek293Input.find_by_interval(i)
+        r.chrom.should == "chr1"
+      end
+    end
+  end
+
+end

data/spec/hg18/wgencodeyalechipseqrel2signalhek293pol2_spec.rb

@@ -0,0 +1,16 @@
+require 'bio-ucsc'
+describe "Bio::Ucsc::Hg18::WgEncodeYaleChIPseqRel2SignalHek293Pol2" do 
+
+  describe "#find_by_interval" do
+    context "given range chr1:1-1,000" do
+      it 'returns a record (r.chrom == "chr1")' do
+        Bio::Ucsc::Hg18::DBConnection.default
+        Bio::Ucsc::Hg18::DBConnection.connect
+        i = Bio::GenomicInterval.parse("chr1:1-1,000")
+        r = Bio::Ucsc::Hg18::WgEncodeYaleChIPseqRel2SignalHek293Pol2.find_by_interval(i)
+        r.chrom.should == "chr1"
+      end
+    end
+  end
+
+end

data/spec/hg18/wgencodeyalechipseqrel2signalhelas3ifnginput_spec.rb

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+require 'bio-ucsc'
+describe "Bio::Ucsc::Hg18::WgEncodeYaleChIPseqRel2SignalHelas3ifngInput" do 
+
+  describe "#find_by_interval" do
+    context "given range chr1:1-1,000" do
+      it 'returns a record (r.chrom == "chr1")' do
+        Bio::Ucsc::Hg18::DBConnection.default
+        Bio::Ucsc::Hg18::DBConnection.connect
+        i = Bio::GenomicInterval.parse("chr1:1-1,000")
+        r = Bio::Ucsc::Hg18::WgEncodeYaleChIPseqRel2SignalHelas3ifngInput.find_by_interval(i)
+        r.chrom.should == "chr1"
+      end
+    end
+  end
+
+end

data/spec/hg18/wgencodeyalechipseqrel2signalhelas3input_spec.rb

@@ -0,0 +1,16 @@
+require 'bio-ucsc'
+describe "Bio::Ucsc::Hg18::WgEncodeYaleChIPseqRel2SignalHelas3Input" do 
+
+  describe "#find_by_interval" do
+    context "given range chr1:1-1,000" do
+      it 'returns a record (r.chrom == "chr1")' do
+        Bio::Ucsc::Hg18::DBConnection.default
+        Bio::Ucsc::Hg18::DBConnection.connect
+        i = Bio::GenomicInterval.parse("chr1:1-1,000")
+        r = Bio::Ucsc::Hg18::WgEncodeYaleChIPseqRel2SignalHelas3Input.find_by_interval(i)
+        r.chrom.should == "chr1"
+      end
+    end
+  end
+
+end

data/spec/hg18/wgencodeyalechipseqrel2signalhelas3pol2_spec.rb

@@ -0,0 +1,16 @@
+require 'bio-ucsc'
+describe "Bio::Ucsc::Hg18::WgEncodeYaleChIPseqRel2SignalHelas3Pol2" do 
+
+  describe "#find_by_interval" do
+    context "given range chr1:1-1,000" do
+      it 'returns a record (r.chrom == "chr1")' do
+        Bio::Ucsc::Hg18::DBConnection.default
+        Bio::Ucsc::Hg18::DBConnection.connect
+        i = Bio::GenomicInterval.parse("chr1:1-1,000")
+        r = Bio::Ucsc::Hg18::WgEncodeYaleChIPseqRel2SignalHelas3Pol2.find_by_interval(i)
+        r.chrom.should == "chr1"
+      end
+    end
+  end
+
+end

data/spec/hg18/wgencodeyalechipseqrel2signalhepg2input_spec.rb

@@ -0,0 +1,16 @@
+require 'bio-ucsc'
+describe "Bio::Ucsc::Hg18::WgEncodeYaleChIPseqRel2SignalHepg2Input" do 
+
+  describe "#find_by_interval" do
+    context "given range chr1:1-1,000" do
+      it 'returns a record (r.chrom == "chr1")' do
+        Bio::Ucsc::Hg18::DBConnection.default
+        Bio::Ucsc::Hg18::DBConnection.connect
+        i = Bio::GenomicInterval.parse("chr1:1-1,000")
+        r = Bio::Ucsc::Hg18::WgEncodeYaleChIPseqRel2SignalHepg2Input.find_by_interval(i)
+        r.chrom.should == "chr1"
+      end
+    end
+  end
+
+end

data/spec/hg18/wgencodeyalechipseqrel2signalk562bgata1_spec.rb

@@ -0,0 +1,16 @@
+require 'bio-ucsc'
+describe "Bio::Ucsc::Hg18::WgEncodeYaleChIPseqRel2SignalK562bGata1" do 
+
+  describe "#find_by_interval" do
+    context "given range chr1:1-1,000" do
+      it 'returns a record (r.chrom == "chr1")' do
+        Bio::Ucsc::Hg18::DBConnection.default
+        Bio::Ucsc::Hg18::DBConnection.connect
+        i = Bio::GenomicInterval.parse("chr1:1-1,000")
+        r = Bio::Ucsc::Hg18::WgEncodeYaleChIPseqRel2SignalK562bGata1.find_by_interval(i)
+        r.chrom.should == "chr1"
+      end
+    end
+  end
+
+end

data/spec/hg18/wgencodeyalechipseqrel2signalk562bznf263_spec.rb

@@ -0,0 +1,16 @@
+require 'bio-ucsc'
+describe "Bio::Ucsc::Hg18::WgEncodeYaleChIPseqRel2SignalK562bZnf263" do 
+
+  describe "#find_by_interval" do
+    context "given range chr1:1-1,000" do
+      it 'returns a record (r.chrom == "chr1")' do
+        Bio::Ucsc::Hg18::DBConnection.default
+        Bio::Ucsc::Hg18::DBConnection.connect
+        i = Bio::GenomicInterval.parse("chr1:1-1,000")
+        r = Bio::Ucsc::Hg18::WgEncodeYaleChIPseqRel2SignalK562bZnf263.find_by_interval(i)
+        r.chrom.should == "chr1"
+      end
+    end
+  end
+
+end

data/spec/hg18/wgencodeyalechipseqrel2signalk562cfos_spec.rb

@@ -0,0 +1,16 @@
+require 'bio-ucsc'
+describe "Bio::Ucsc::Hg18::WgEncodeYaleChIPseqRel2SignalK562Cfos" do 
+
+  describe "#find_by_interval" do
+    context "given range chr1:1-1,000" do
+      it 'returns a record (r.chrom == "chr1")' do
+        Bio::Ucsc::Hg18::DBConnection.default
+        Bio::Ucsc::Hg18::DBConnection.connect
+        i = Bio::GenomicInterval.parse("chr1:1-1,000")
+        r = Bio::Ucsc::Hg18::WgEncodeYaleChIPseqRel2SignalK562Cfos.find_by_interval(i)
+        r.chrom.should == "chr1"
+      end
+    end
+  end
+
+end