bio-ucsc-api 0.0.4 → 0.0.5

data/spec/hg18/wgencodeyalechipseqpeakshepg2erraforskln_spec.rb

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+require 'bio-ucsc'
+describe "Bio::Ucsc::Hg18::WgEncodeYaleChIPseqPeaksHepg2ErraForskln" do 
+
+  describe "#find_by_interval" do
+    context "given range chr1:1-1,000,000" do
+      it 'returns a record (r.chrom == "chr1")' do
+        Bio::Ucsc::Hg18::DBConnection.default
+        Bio::Ucsc::Hg18::DBConnection.connect
+        i = Bio::GenomicInterval.parse("chr1:1-1,000,000")
+        r = Bio::Ucsc::Hg18::WgEncodeYaleChIPseqPeaksHepg2ErraForskln.find_by_interval(i)
+        r.chrom.should == "chr1"
+      end
+    end
+  end
+
+end

data/spec/hg18/wgencodeyalechipseqpeakshepg2grp20forskln_spec.rb

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+require 'bio-ucsc'
+describe "Bio::Ucsc::Hg18::WgEncodeYaleChIPseqPeaksHepg2Grp20Forskln" do 
+
+  describe "#find_by_interval" do
+    context "given range chr1:1-1,000,000" do
+      it 'returns a record (r.chrom == "chr1")' do
+        Bio::Ucsc::Hg18::DBConnection.default
+        Bio::Ucsc::Hg18::DBConnection.connect
+        i = Bio::GenomicInterval.parse("chr1:1-1,000,000")
+        r = Bio::Ucsc::Hg18::WgEncodeYaleChIPseqPeaksHepg2Grp20Forskln.find_by_interval(i)
+        r.chrom.should == "chr1"
+      end
+    end
+  end
+
+end

data/spec/hg18/wgencodeyalechipseqpeakshepg2hnf4aforskln_spec.rb

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+require 'bio-ucsc'
+describe "Bio::Ucsc::Hg18::WgEncodeYaleChIPseqPeaksHepg2Hnf4aForskln" do 
+
+  describe "#find_by_interval" do
+    context "given range chr1:1-1,000,000" do
+      it 'returns a record (r.chrom == "chr1")' do
+        Bio::Ucsc::Hg18::DBConnection.default
+        Bio::Ucsc::Hg18::DBConnection.connect
+        i = Bio::GenomicInterval.parse("chr1:1-1,000,000")
+        r = Bio::Ucsc::Hg18::WgEncodeYaleChIPseqPeaksHepg2Hnf4aForskln.find_by_interval(i)
+        r.chrom.should == "chr1"
+      end
+    end
+  end
+
+end

data/spec/hg18/wgencodeyalechipseqpeakshepg2hsf1forskln_spec.rb

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+require 'bio-ucsc'
+describe "Bio::Ucsc::Hg18::WgEncodeYaleChIPseqPeaksHepg2Hsf1Forskln" do 
+
+  describe "#find_by_interval" do
+    context "given range chr1:1-1,000,000" do
+      it 'returns a record (r.chrom == "chr1")' do
+        Bio::Ucsc::Hg18::DBConnection.default
+        Bio::Ucsc::Hg18::DBConnection.connect
+        i = Bio::GenomicInterval.parse("chr1:1-1,000,000")
+        r = Bio::Ucsc::Hg18::WgEncodeYaleChIPseqPeaksHepg2Hsf1Forskln.find_by_interval(i)
+        r.chrom.should == "chr1"
+      end
+    end
+  end
+
+end

data/spec/hg18/wgencodeyalechipseqpeakshepg2pgc1aforskln_spec.rb

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+require 'bio-ucsc'
+describe "Bio::Ucsc::Hg18::WgEncodeYaleChIPseqPeaksHepg2Pgc1aForskln" do 
+
+  describe "#find_by_interval" do
+    context "given range chr1:1-20,000,000" do
+      it 'returns a record (r.chrom == "chr1")' do
+        Bio::Ucsc::Hg18::DBConnection.default
+        Bio::Ucsc::Hg18::DBConnection.connect
+        i = Bio::GenomicInterval.parse("chr1:1-20,000,000")
+        r = Bio::Ucsc::Hg18::WgEncodeYaleChIPseqPeaksHepg2Pgc1aForskln.find_by_interval(i)
+        r.chrom.should == "chr1"
+      end
+    end
+  end
+
+end

data/spec/hg18/wgencodeyalechipseqpeakshepg2pol2_spec.rb

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+require 'bio-ucsc'
+describe "Bio::Ucsc::Hg18::WgEncodeYaleChIPseqPeaksHepg2Pol2" do 
+
+  describe "#find_by_interval" do
+    context "given range chr1:1-1,000,000" do
+      it 'returns a record (r.chrom == "chr1")' do
+        Bio::Ucsc::Hg18::DBConnection.default
+        Bio::Ucsc::Hg18::DBConnection.connect
+        i = Bio::GenomicInterval.parse("chr1:1-1,000,000")
+        r = Bio::Ucsc::Hg18::WgEncodeYaleChIPseqPeaksHepg2Pol2.find_by_interval(i)
+        r.chrom.should == "chr1"
+      end
+    end
+  end
+
+end

data/spec/hg18/wgencodeyalechipseqpeakshepg2pol2forskln_spec.rb

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+require 'bio-ucsc'
+describe "Bio::Ucsc::Hg18::WgEncodeYaleChIPseqPeaksHepg2Pol2Forskln" do 
+
+  describe "#find_by_interval" do
+    context "given range chr1:1-1,000,000" do
+      it 'returns a record (r.chrom == "chr1")' do
+        Bio::Ucsc::Hg18::DBConnection.default
+        Bio::Ucsc::Hg18::DBConnection.connect
+        i = Bio::GenomicInterval.parse("chr1:1-1,000,000")
+        r = Bio::Ucsc::Hg18::WgEncodeYaleChIPseqPeaksHepg2Pol2Forskln.find_by_interval(i)
+        r.chrom.should == "chr1"
+      end
+    end
+  end
+
+end

data/spec/hg18/wgencodeyalechipseqpeakshepg2srebp1a_spec.rb

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+require 'bio-ucsc'
+describe "Bio::Ucsc::Hg18::WgEncodeYaleChIPseqPeaksHepg2Srebp1a" do 
+
+  describe "#find_by_interval" do
+    context "given range chr1:1-1,000,000" do
+      it 'returns a record (r.chrom == "chr1")' do
+        Bio::Ucsc::Hg18::DBConnection.default
+        Bio::Ucsc::Hg18::DBConnection.connect
+        i = Bio::GenomicInterval.parse("chr1:1-1,000,000")
+        r = Bio::Ucsc::Hg18::WgEncodeYaleChIPseqPeaksHepg2Srebp1a.find_by_interval(i)
+        r.chrom.should == "chr1"
+      end
+    end
+  end
+
+end

data/spec/hg18/wgencodeyalechipseqpeakshepg2srebp1ainsln_spec.rb

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+require 'bio-ucsc'
+describe "Bio::Ucsc::Hg18::WgEncodeYaleChIPseqPeaksHepg2Srebp1aInsln" do 
+
+  describe "#find_by_interval" do
+    context "given range chr1:1-1,000,000" do
+      it 'returns a record (r.chrom == "chr1")' do
+        Bio::Ucsc::Hg18::DBConnection.default
+        Bio::Ucsc::Hg18::DBConnection.connect
+        i = Bio::GenomicInterval.parse("chr1:1-1,000,000")
+        r = Bio::Ucsc::Hg18::WgEncodeYaleChIPseqPeaksHepg2Srebp1aInsln.find_by_interval(i)
+        r.chrom.should == "chr1"
+      end
+    end
+  end
+
+end

data/spec/hg18/wgencodeyalechipseqpeakshepg2srebp2_spec.rb

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+require 'bio-ucsc'
+describe "Bio::Ucsc::Hg18::WgEncodeYaleChIPseqPeaksHepg2Srebp2" do 
+
+  describe "#find_by_interval" do
+    context "given range chr1:1-1,000,000" do
+      it 'returns a record (r.chrom == "chr1")' do
+        Bio::Ucsc::Hg18::DBConnection.default
+        Bio::Ucsc::Hg18::DBConnection.connect
+        i = Bio::GenomicInterval.parse("chr1:1-1,000,000")
+        r = Bio::Ucsc::Hg18::WgEncodeYaleChIPseqPeaksHepg2Srebp2.find_by_interval(i)
+        r.chrom.should == "chr1"
+      end
+    end
+  end
+
+end

data/spec/hg18/wgencodeyalechipseqpeakshuveccjun_spec.rb

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+require 'bio-ucsc'
+describe "Bio::Ucsc::Hg18::WgEncodeYaleChIPseqPeaksHuvecCjun" do 
+
+  describe "#find_by_interval" do
+    context "given range chr1:1-1,000,000" do
+      it 'returns a record (r.chrom == "chr1")' do
+        Bio::Ucsc::Hg18::DBConnection.default
+        Bio::Ucsc::Hg18::DBConnection.connect
+        i = Bio::GenomicInterval.parse("chr1:1-1,000,000")
+        r = Bio::Ucsc::Hg18::WgEncodeYaleChIPseqPeaksHuvecCjun.find_by_interval(i)
+        r.chrom.should == "chr1"
+      end
+    end
+  end
+
+end

data/spec/hg18/wgencodeyalechipseqpeakshuvecmax_spec.rb

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+require 'bio-ucsc'
+describe "Bio::Ucsc::Hg18::WgEncodeYaleChIPseqPeaksHuvecMax" do 
+
+  describe "#find_by_interval" do
+    context "given range chr1:1-1,000,000" do
+      it 'returns a record (r.chrom == "chr1")' do
+        Bio::Ucsc::Hg18::DBConnection.default
+        Bio::Ucsc::Hg18::DBConnection.connect
+        i = Bio::GenomicInterval.parse("chr1:1-1,000,000")
+        r = Bio::Ucsc::Hg18::WgEncodeYaleChIPseqPeaksHuvecMax.find_by_interval(i)
+        r.chrom.should == "chr1"
+      end
+    end
+  end
+
+end

data/spec/hg18/wgencodeyalechipseqpeakshuvecpol2_spec.rb

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+require 'bio-ucsc'
+describe "Bio::Ucsc::Hg18::WgEncodeYaleChIPseqPeaksHuvecPol2" do 
+
+  describe "#find_by_interval" do
+    context "given range chr1:1-1,000,000" do
+      it 'returns a record (r.chrom == "chr1")' do
+        Bio::Ucsc::Hg18::DBConnection.default
+        Bio::Ucsc::Hg18::DBConnection.connect
+        i = Bio::GenomicInterval.parse("chr1:1-1,000,000")
+        r = Bio::Ucsc::Hg18::WgEncodeYaleChIPseqPeaksHuvecPol2.find_by_interval(i)
+        r.chrom.should == "chr1"
+      end
+    end
+  end
+
+end

data/spec/hg18/wgencodeyalechipseqpeaksk562atf3_spec.rb

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+require 'bio-ucsc'
+describe "Bio::Ucsc::Hg18::WgEncodeYaleChIPseqPeaksK562Atf3" do 
+
+  describe "#find_by_interval" do
+    context "given range chr1:1-1,000,000" do
+      it 'returns a record (r.chrom == "chr1")' do
+        Bio::Ucsc::Hg18::DBConnection.default
+        Bio::Ucsc::Hg18::DBConnection.connect
+        i = Bio::GenomicInterval.parse("chr1:1-1,000,000")
+        r = Bio::Ucsc::Hg18::WgEncodeYaleChIPseqPeaksK562Atf3.find_by_interval(i)
+        r.chrom.should == "chr1"
+      end
+    end
+  end
+
+end

data/spec/hg18/wgencodeyalechipseqpeaksk562bdp1_spec.rb

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+require 'bio-ucsc'
+describe "Bio::Ucsc::Hg18::WgEncodeYaleChIPseqPeaksK562Bdp1" do 
+
+  describe "#find_by_interval" do
+    context "given range chr1:1-20,000,000" do
+      it 'returns a record (r.chrom == "chr1")' do
+        Bio::Ucsc::Hg18::DBConnection.default
+        Bio::Ucsc::Hg18::DBConnection.connect
+        i = Bio::GenomicInterval.parse("chr1:1-20,000,000")
+        r = Bio::Ucsc::Hg18::WgEncodeYaleChIPseqPeaksK562Bdp1.find_by_interval(i)
+        r.chrom.should == "chr1"
+      end
+    end
+  end
+
+end

data/spec/hg18/wgencodeyalechipseqpeaksk562be2f4_spec.rb

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+require 'bio-ucsc'
+describe "Bio::Ucsc::Hg18::WgEncodeYaleChIPseqPeaksK562bE2f4" do 
+
+  describe "#find_by_interval" do
+    context "given range chr1:1-1,000,000" do
+      it 'returns a record (r.chrom == "chr1")' do
+        Bio::Ucsc::Hg18::DBConnection.default
+        Bio::Ucsc::Hg18::DBConnection.connect
+        i = Bio::GenomicInterval.parse("chr1:1-1,000,000")
+        r = Bio::Ucsc::Hg18::WgEncodeYaleChIPseqPeaksK562bE2f4.find_by_interval(i)
+        r.chrom.should == "chr1"
+      end
+    end
+  end
+
+end

data/spec/hg18/wgencodeyalechipseqpeaksk562be2f6_spec.rb

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+require 'bio-ucsc'
+describe "Bio::Ucsc::Hg18::WgEncodeYaleChIPseqPeaksK562bE2f6" do 
+
+  describe "#find_by_interval" do
+    context "given range chr1:1-1,000,000" do
+      it 'returns a record (r.chrom == "chr1")' do
+        Bio::Ucsc::Hg18::DBConnection.default
+        Bio::Ucsc::Hg18::DBConnection.connect
+        i = Bio::GenomicInterval.parse("chr1:1-1,000,000")
+        r = Bio::Ucsc::Hg18::WgEncodeYaleChIPseqPeaksK562bE2f6.find_by_interval(i)
+        r.chrom.should == "chr1"
+      end
+    end
+  end
+
+end

data/spec/hg18/wgencodeyalechipseqpeaksk562bgata1v2_spec.rb

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+require 'bio-ucsc'
+describe "Bio::Ucsc::Hg18::WgEncodeYaleChIPseqPeaksK562bGata1V2" do 
+
+  describe "#find_by_interval" do
+    context "given range chr1:1-1,000,000" do
+      it 'returns a record (r.chrom == "chr1")' do
+        Bio::Ucsc::Hg18::DBConnection.default
+        Bio::Ucsc::Hg18::DBConnection.connect
+        i = Bio::GenomicInterval.parse("chr1:1-1,000,000")
+        r = Bio::Ucsc::Hg18::WgEncodeYaleChIPseqPeaksK562bGata1V2.find_by_interval(i)
+        r.chrom.should == "chr1"
+      end
+    end
+  end
+
+end

data/spec/hg18/wgencodeyalechipseqpeaksk562bgata2_spec.rb

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+require 'bio-ucsc'
+describe "Bio::Ucsc::Hg18::WgEncodeYaleChIPseqPeaksK562bGata2" do 
+
+  describe "#find_by_interval" do
+    context "given range chr1:1-1,000,000" do
+      it 'returns a record (r.chrom == "chr1")' do
+        Bio::Ucsc::Hg18::DBConnection.default
+        Bio::Ucsc::Hg18::DBConnection.connect
+        i = Bio::GenomicInterval.parse("chr1:1-1,000,000")
+        r = Bio::Ucsc::Hg18::WgEncodeYaleChIPseqPeaksK562bGata2.find_by_interval(i)
+        r.chrom.should == "chr1"
+      end
+    end
+  end
+
+end

data/spec/hg18/wgencodeyalechipseqpeaksk562brf1_spec.rb

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+require 'bio-ucsc'
+describe "Bio::Ucsc::Hg18::WgEncodeYaleChIPseqPeaksK562Brf1" do 
+
+  describe "#find_by_interval" do
+    context "given range chr1:1-20,000,000" do
+      it 'returns a record (r.chrom == "chr1")' do
+        Bio::Ucsc::Hg18::DBConnection.default
+        Bio::Ucsc::Hg18::DBConnection.connect
+        i = Bio::GenomicInterval.parse("chr1:1-20,000,000")
+        r = Bio::Ucsc::Hg18::WgEncodeYaleChIPseqPeaksK562Brf1.find_by_interval(i)
+        r.chrom.should == "chr1"
+      end
+    end
+  end
+
+end

data/spec/hg18/wgencodeyalechipseqpeaksk562brf2_spec.rb

@@ -0,0 +1,16 @@
+require 'bio-ucsc'
+describe "Bio::Ucsc::Hg18::WgEncodeYaleChIPseqPeaksK562Brf2" do 
+
+  describe "#find_by_interval" do
+    context "given range chr1:1-1,000,000" do
+      it 'returns a record (r.chrom == "chr1")' do
+        Bio::Ucsc::Hg18::DBConnection.default
+        Bio::Ucsc::Hg18::DBConnection.connect
+        i = Bio::GenomicInterval.parse("chr1:1-1,000,000")
+        r = Bio::Ucsc::Hg18::WgEncodeYaleChIPseqPeaksK562Brf2.find_by_interval(i)
+        r.chrom.should == "chr1"
+      end
+    end
+  end
+
+end

data/spec/hg18/wgencodeyalechipseqpeaksk562brg1musigg_spec.rb

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+require 'bio-ucsc'
+describe "Bio::Ucsc::Hg18::WgEncodeYaleChIPseqPeaksK562Brg1Musigg" do 
+
+  describe "#find_by_interval" do
+    context "given range chr1:1-1,000,000" do
+      it 'returns a record (r.chrom == "chr1")' do
+        Bio::Ucsc::Hg18::DBConnection.default
+        Bio::Ucsc::Hg18::DBConnection.connect
+        i = Bio::GenomicInterval.parse("chr1:1-1,000,000")
+        r = Bio::Ucsc::Hg18::WgEncodeYaleChIPseqPeaksK562Brg1Musigg.find_by_interval(i)
+        r.chrom.should == "chr1"
+      end
+    end
+  end
+
+end

data/spec/hg18/wgencodeyalechipseqpeaksk562bsetdb1_spec.rb

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+require 'bio-ucsc'
+describe "Bio::Ucsc::Hg18::WgEncodeYaleChIPseqPeaksK562bSetdb1" do 
+
+  describe "#find_by_interval" do
+    context "given range chr1:1-1,000,000" do
+      it 'returns a record (r.chrom == "chr1")' do
+        Bio::Ucsc::Hg18::DBConnection.default
+        Bio::Ucsc::Hg18::DBConnection.connect
+        i = Bio::GenomicInterval.parse("chr1:1-1,000,000")
+        r = Bio::Ucsc::Hg18::WgEncodeYaleChIPseqPeaksK562bSetdb1.find_by_interval(i)
+        r.chrom.should == "chr1"
+      end
+    end
+  end
+
+end

data/spec/hg18/wgencodeyalechipseqpeaksk562bsetdb1mnase_spec.rb

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+require 'bio-ucsc'
+describe "Bio::Ucsc::Hg18::WgEncodeYaleChIPseqPeaksK562bSetdb1Mnase" do 
+
+  describe "#find_by_interval" do
+    context "given range chr1:1-20,000,000" do
+      it 'returns a record (r.chrom == "chr1")' do
+        Bio::Ucsc::Hg18::DBConnection.default
+        Bio::Ucsc::Hg18::DBConnection.connect
+        i = Bio::GenomicInterval.parse("chr1:1-20,000,000")
+        r = Bio::Ucsc::Hg18::WgEncodeYaleChIPseqPeaksK562bSetdb1Mnase.find_by_interval(i)
+        r.chrom.should == "chr1"
+      end
+    end
+  end
+
+end

data/spec/hg18/wgencodeyalechipseqpeaksk562btr4_spec.rb

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+require 'bio-ucsc'
+describe "Bio::Ucsc::Hg18::WgEncodeYaleChIPseqPeaksK562bTr4" do 
+
+  describe "#find_by_interval" do
+    context "given range chr1:1-1,000,000" do
+      it 'returns a record (r.chrom == "chr1")' do
+        Bio::Ucsc::Hg18::DBConnection.default
+        Bio::Ucsc::Hg18::DBConnection.connect
+        i = Bio::GenomicInterval.parse("chr1:1-1,000,000")
+        r = Bio::Ucsc::Hg18::WgEncodeYaleChIPseqPeaksK562bTr4.find_by_interval(i)
+        r.chrom.should == "chr1"
+      end
+    end
+  end
+
+end

data/spec/hg18/wgencodeyalechipseqpeaksk562byy1_spec.rb

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+require 'bio-ucsc'
+describe "Bio::Ucsc::Hg18::WgEncodeYaleChIPseqPeaksK562bYy1" do 
+
+  describe "#find_by_interval" do
+    context "given range chr1:1-1,000,000" do
+      it 'returns a record (r.chrom == "chr1")' do
+        Bio::Ucsc::Hg18::DBConnection.default
+        Bio::Ucsc::Hg18::DBConnection.connect
+        i = Bio::GenomicInterval.parse("chr1:1-1,000,000")
+        r = Bio::Ucsc::Hg18::WgEncodeYaleChIPseqPeaksK562bYy1.find_by_interval(i)
+        r.chrom.should == "chr1"
+      end
+    end
+  end
+
+end