bio-incanter 0.1.0

data/Gemfile

@@ -0,0 +1,14 @@
+source "http://rubygems.org"
+# Add dependencies required to use your gem here.
+# Example:
+#   gem "activesupport", ">= 2.3.5"
+gem 'jruby-openssl'
+
+# Add dependencies to develop your gem here.
+# Include everything needed to run rake, tests, features, etc.
+group :development do
+  gem "rspec", "~> 2.8.0"
+  gem "rdoc", "~> 3.12"
+  gem "bundler", "< 1.1.5"
+  gem "jeweler", "~> 1.8.4"
+end

data/Gemfile.lock

@@ -0,0 +1,35 @@
+GEM
+  remote: http://rubygems.org/
+  specs:
+    bouncy-castle-java (1.5.0146.1)
+    diff-lcs (1.1.3)
+    git (1.2.5)
+    jeweler (1.8.4)
+      bundler (~> 1.0)
+      git (>= 1.2.5)
+      rake
+      rdoc
+    jruby-openssl (0.7.7)
+      bouncy-castle-java (>= 1.5.0146.1)
+    json (1.7.4-java)
+    rake (0.9.2.2)
+    rdoc (3.12)
+      json (~> 1.4)
+    rspec (2.8.0)
+      rspec-core (~> 2.8.0)
+      rspec-expectations (~> 2.8.0)
+      rspec-mocks (~> 2.8.0)
+    rspec-core (2.8.0)
+    rspec-expectations (2.8.0)
+      diff-lcs (~> 1.1.2)
+    rspec-mocks (2.8.0)
+
+PLATFORMS
+  java
+
+DEPENDENCIES
+  bundler (< 1.1.5)
+  jeweler (~> 1.8.4)
+  jruby-openssl
+  rdoc (~> 3.12)
+  rspec (~> 2.8.0)

data/LICENSE.txt

@@ -0,0 +1,20 @@
+Copyright (c) 2012 Matteo Picciolini
+
+Permission is hereby granted, free of charge, to any person obtaining
+a copy of this software and associated documentation files (the
+"Software"), to deal in the Software without restriction, including
+without limitation the rights to use, copy, modify, merge, publish,
+distribute, sublicense, and/or sell copies of the Software, and to
+permit persons to whom the Software is furnished to do so, subject to
+the following conditions:
+
+The above copyright notice and this permission notice shall be
+included in all copies or substantial portions of the Software.
+
+THE SOFTWARE IS PROVIDED "AS IS", WITHOUT WARRANTY OF ANY KIND,
+EXPRESS OR IMPLIED, INCLUDING BUT NOT LIMITED TO THE WARRANTIES OF
+MERCHANTABILITY, FITNESS FOR A PARTICULAR PURPOSE AND
+NONINFRINGEMENT. IN NO EVENT SHALL THE AUTHORS OR COPYRIGHT HOLDERS BE
+LIABLE FOR ANY CLAIM, DAMAGES OR OTHER LIABILITY, WHETHER IN AN ACTION
+OF CONTRACT, TORT OR OTHERWISE, ARISING FROM, OUT OF OR IN CONNECTION
+WITH THE SOFTWARE OR THE USE OR OTHER DEALINGS IN THE SOFTWARE.

data/README.rdoc

@@ -0,0 +1,26 @@
+= bio-incanter
+
+bio-incanter is a Jruby bio-gem for use Incanter lib. Incanter is a Clojure lib to save and view graphics.
+
+== Use 
+
+* Select your plot class
+* Instance that class
+* Call save method to save your plot
+* Call view method to view your plot
+
+== Contributing to bio-incanter
+ 
+* Check out the latest master to make sure the feature hasn't been implemented or the bug hasn't been fixed yet.
+* Check out the issue tracker to make sure someone already hasn't requested it and/or contributed it.
+* Fork the project.
+* Start a feature/bugfix branch.
+* Commit and push until you are happy with your contribution.
+* Make sure to add tests for it. This is important so I don't break it in a future version unintentionally.
+* Please try not to mess with the Rakefile, version, or history. If you want to have your own version, or is otherwise necessary, that is fine, but please isolate to its own commit so I can cherry-pick around it.
+
+== Copyright
+
+Copyright (c) 2012 Matteo Picciolini. See LICENSE.txt for
+further details.
+

data/Rakefile

@@ -0,0 +1,51 @@
+# encoding: utf-8
+
+require 'rubygems'
+require 'bundler'
+begin
+  Bundler.setup(:default, :development)
+rescue Bundler::BundlerError => e
+  $stderr.puts e.message
+  $stderr.puts "Run `bundle install` to install missing gems"
+  exit e.status_code
+end
+require 'rake'
+
+require 'jeweler'
+Jeweler::Tasks.new do |gem|
+  # gem is a Gem::Specification... see http://docs.rubygems.org/read/chapter/20 for more options
+  gem.name = "bio-incanter"
+  gem.homepage = "http://github.com/cerbero/bio-incanter"
+  gem.license = "MIT"
+  gem.summary = %Q{Build Graph with Jruby}
+  gem.description = %Q{A Jruby wrapper to Incanter lib}
+  gem.email = "matteo.picciolini@gmail.com"
+  gem.authors = ["Matteo Picciolini"]
+  #gem.require_paths << 'ext'
+  #gem.files.include << 'ext/clocomics-1.0.0-standalone.jar'
+  # dependencies defined in Gemfile
+end
+Jeweler::RubygemsDotOrgTasks.new
+
+require 'rspec/core'
+require 'rspec/core/rake_task'
+RSpec::Core::RakeTask.new(:spec) do |spec|
+  spec.pattern = FileList['spec/**/*_spec.rb']
+end
+
+RSpec::Core::RakeTask.new(:rcov) do |spec|
+  spec.pattern = 'spec/**/*_spec.rb'
+  spec.rcov = true
+end
+
+task :default => :spec
+
+require 'rdoc/task'
+Rake::RDocTask.new do |rdoc|
+  version = File.exist?('VERSION') ? File.read('VERSION') : ""
+
+  rdoc.rdoc_dir = 'rdoc'
+  rdoc.title = "comics #{version}"
+  rdoc.rdoc_files.include('README*')
+  rdoc.rdoc_files.include('lib/**/*.rb')
+end

data/VERSION

@@ -0,0 +1 @@
+0.1.0

data/bio-incanter.gemspec

@@ -0,0 +1,136 @@
+# Generated by jeweler
+# DO NOT EDIT THIS FILE DIRECTLY
+# Instead, edit Jeweler::Tasks in Rakefile, and run 'rake gemspec'
+# -*- encoding: utf-8 -*-
+
+Gem::Specification.new do |s|
+  s.name = "bio-incanter"
+  s.version = "0.1.0"
+
+  s.required_rubygems_version = Gem::Requirement.new(">= 0") if s.respond_to? :required_rubygems_version=
+  s.authors = ["Matteo Picciolini"]
+  s.date = "2012-08-06"
+  s.description = "A Jruby wrapper to Incanter lib"
+  s.email = "matteo.picciolini@gmail.com"
+  s.extra_rdoc_files = [
+    "LICENSE.txt",
+    "README.rdoc"
+  ]
+  s.files = [
+    "Gemfile",
+    "Gemfile.lock",
+    "LICENSE.txt",
+    "README.rdoc",
+    "Rakefile",
+    "VERSION",
+    "bio-incanter.gemspec",
+    "doc/AreaChart.html",
+    "doc/BarChart.html",
+    "doc/BlandAltman.html",
+    "doc/BoxPlot.html",
+    "doc/FunctionPlot.html",
+    "doc/HeatMap.html",
+    "doc/Histogram.html",
+    "doc/LICENSE_txt.html",
+    "doc/LineChart.html",
+    "doc/Object.html",
+    "doc/PieChart.html",
+    "doc/README_rdoc.html",
+    "doc/ScatterPlot.html",
+    "doc/TimeChart.html",
+    "doc/TracePlot.html",
+    "doc/XyPlot.html",
+    "doc/created.rid",
+    "doc/images/add.png",
+    "doc/images/brick.png",
+    "doc/images/brick_link.png",
+    "doc/images/bug.png",
+    "doc/images/bullet_black.png",
+    "doc/images/bullet_toggle_minus.png",
+    "doc/images/bullet_toggle_plus.png",
+    "doc/images/date.png",
+    "doc/images/delete.png",
+    "doc/images/find.png",
+    "doc/images/loadingAnimation.gif",
+    "doc/images/macFFBgHack.png",
+    "doc/images/package.png",
+    "doc/images/page_green.png",
+    "doc/images/page_white_text.png",
+    "doc/images/page_white_width.png",
+    "doc/images/plugin.png",
+    "doc/images/ruby.png",
+    "doc/images/tag_blue.png",
+    "doc/images/tag_green.png",
+    "doc/images/transparent.png",
+    "doc/images/wrench.png",
+    "doc/images/wrench_orange.png",
+    "doc/images/zoom.png",
+    "doc/index.html",
+    "doc/js/darkfish.js",
+    "doc/js/jquery.js",
+    "doc/js/navigation.js",
+    "doc/js/search.js",
+    "doc/js/search_index.js",
+    "doc/js/searcher.js",
+    "doc/rdoc.css",
+    "doc/table_of_contents.html",
+    "lib/area_chart/area_chart.rb",
+    "lib/bar_chart/bar_chart.rb",
+    "lib/bio-incanter.rb",
+    "lib/bland_altman/bland_altman.rb",
+    "lib/box_plot/box_plot.rb",
+    "lib/function_plot/function_plot.rb",
+    "lib/histogram/histogram.rb",
+    "lib/java/clocomics-1.0.0-standalone.jar",
+    "lib/line_chart/line_chart.rb",
+    "lib/pie_chart/pie_chart.rb",
+    "lib/qq_plot/qq_plot.rb",
+    "lib/scatter_plot/scatter_plot.rb",
+    "lib/time_chart/time_chart.rb",
+    "lib/trace_plot/trace_plot.rb",
+    "lib/xy_plot/xy_plot.rb",
+    "spec/bar_chart_spec.rb",
+    "spec/bland_altman_spec.rb",
+    "spec/box_plot_spec.rb",
+    "spec/function_plot_spec.rb",
+    "spec/histogram_spec.rb",
+    "spec/line_chart_spec.rb",
+    "spec/pie_chart_spec.rb",
+    "spec/qq_plot_spec.rb",
+    "spec/scatter_plot_spec.rb",
+    "spec/spec_helper.rb",
+    "spec/time_chart_spec.rb",
+    "spec/trace_plot_spec.rb",
+    "spec/xy_plot_spec.rb"
+  ]
+  s.homepage = "http://github.com/cerbero/bio-incanter"
+  s.licenses = ["MIT"]
+  s.require_paths = ["lib"]
+  s.rubygems_version = "1.8.15"
+  s.summary = "Build Graph with Jruby"
+
+  if s.respond_to? :specification_version then
+    s.specification_version = 3
+
+    if Gem::Version.new(Gem::VERSION) >= Gem::Version.new('1.2.0') then
+      s.add_runtime_dependency(%q<jruby-openssl>, [">= 0"])
+      s.add_development_dependency(%q<rspec>, ["~> 2.8.0"])
+      s.add_development_dependency(%q<rdoc>, ["~> 3.12"])
+      s.add_development_dependency(%q<bundler>, ["< 1.1.5"])
+      s.add_development_dependency(%q<jeweler>, ["~> 1.8.4"])
+    else
+      s.add_dependency(%q<jruby-openssl>, [">= 0"])
+      s.add_dependency(%q<rspec>, ["~> 2.8.0"])
+      s.add_dependency(%q<rdoc>, ["~> 3.12"])
+      s.add_dependency(%q<bundler>, ["< 1.1.5"])
+      s.add_dependency(%q<jeweler>, ["~> 1.8.4"])
+    end
+  else
+    s.add_dependency(%q<jruby-openssl>, [">= 0"])
+    s.add_dependency(%q<rspec>, ["~> 2.8.0"])
+    s.add_dependency(%q<rdoc>, ["~> 3.12"])
+    s.add_dependency(%q<bundler>, ["< 1.1.5"])
+    s.add_dependency(%q<jeweler>, ["~> 1.8.4"])
+  end
+end
+

data/doc/AreaChart.html

@@ -0,0 +1,473 @@
+<!DOCTYPE html>
+
+<html>
+<head>
+<meta content="text/html; charset=UTF-8" http-equiv="Content-Type">
+
+<title>class AreaChart - RDoc Documentation</title>
+
+<link type="text/css" media="screen" href="./rdoc.css" rel="stylesheet">
+
+<script type="text/javascript">
+  var rdoc_rel_prefix = "./";
+</script>
+
+<script type="text/javascript" charset="utf-8" src="./js/jquery.js"></script>
+<script type="text/javascript" charset="utf-8" src="./js/navigation.js"></script>
+<script type="text/javascript" charset="utf-8" src="./js/search_index.js"></script>
+<script type="text/javascript" charset="utf-8" src="./js/search.js"></script>
+<script type="text/javascript" charset="utf-8" src="./js/searcher.js"></script>
+<script type="text/javascript" charset="utf-8" src="./js/darkfish.js"></script>
+
+
+<body id="top" class="class">
+<nav id="metadata">
+  <nav id="home-section" class="section">
+  <h3 class="section-header">
+    <a href="./index.html">Home</a>
+    <a href="./table_of_contents.html#classes">Classes</a>
+    <a href="./table_of_contents.html#methods">Methods</a>
+  </h3>
+</nav>
+
+
+  <nav id="search-section" class="section project-section" class="initially-hidden">
+  <form action="#" method="get" accept-charset="utf-8">
+    <h3 class="section-header">
+      <input type="text" name="search" placeholder="Search" id="search-field"
+             title="Type to search, Up and Down to navigate, Enter to load">
+    </h3>
+  </form>
+
+  <ul id="search-results" class="initially-hidden"></ul>
+</nav>
+
+
+  <div id="file-metadata">
+    <nav id="file-list-section" class="section">
+  <h3 class="section-header">Defined In</h3>
+  <ul>
+    <li>lib/area_chart/area_chart.rb
+  </ul>
+</nav>
+
+    
+  </div>
+
+  <div id="class-metadata">
+    
+    <nav id="parent-class-section" class="section">
+  <h3 class="section-header">Parent</h3>
+  
+  <p class="link"><a href="Object.html">Object</a>
+  
+</nav>
+
+    
+    <!-- Method Quickref -->
+<nav id="method-list-section" class="section">
+  <h3 class="section-header">Methods</h3>
+
+  <ul class="link-list">
+    
+    <li><a href="#method-c-new">::new</a>
+    
+    <li><a href="#method-i-check_par">#check_par</a>
+    
+    <li><a href="#method-i-getGroup">#getGroup</a>
+    
+    <li><a href="#method-i-getParams">#getParams</a>
+    
+    <li><a href="#method-i-getValue">#getValue</a>
+    
+    <li><a href="#method-i-save">#save</a>
+    
+    <li><a href="#method-i-view">#view</a>
+    
+  </ul>
+</nav>
+
+  </div>
+
+  <div id="project-metadata">
+    <nav id="fileindex-section" class="section project-section">
+  <h3 class="section-header">Pages</h3>
+
+  <ul>
+  
+    <li class="file"><a href="./LICENSE_txt.html">LICENSE</a>
+  
+    <li class="file"><a href="./README_rdoc.html">README</a>
+  
+  </ul>
+</nav>
+
+    <nav id="classindex-section" class="section project-section">
+  <h3 class="section-header">Class and Module Index</h3>
+
+  <ul class="link-list">
+  
+    <li><a href="./AreaChart.html">AreaChart</a>
+  
+    <li><a href="./BarChart.html">BarChart</a>
+  
+    <li><a href="./BlandAltman.html">BlandAltman</a>
+  
+    <li><a href="./BoxPlot.html">BoxPlot</a>
+  
+    <li><a href="./FunctionPlot.html">FunctionPlot</a>
+  
+    <li><a href="./HeatMap.html">HeatMap</a>
+  
+    <li><a href="./Histogram.html">Histogram</a>
+  
+    <li><a href="./LineChart.html">LineChart</a>
+  
+    <li><a href="./Object.html">Object</a>
+  
+    <li><a href="./PieChart.html">PieChart</a>
+  
+    <li><a href="./ScatterPlot.html">ScatterPlot</a>
+  
+    <li><a href="./TimeChart.html">TimeChart</a>
+  
+    <li><a href="./TracePlot.html">TracePlot</a>
+  
+    <li><a href="./XyPlot.html">XyPlot</a>
+  
+  </ul>
+</nav>
+
+  </div>
+</nav>
+
+<div id="documentation">
+  <h1 class="class">class AreaChart</h1>
+
+  <div id="description" class="description">
+    
+  </div><!-- description -->
+
+  
+  
+  
+  <section id="5Buntitled-5D" class="documentation-section">
+    
+
+    
+
+    
+
+    
+
+    <!-- Methods -->
+    
+     <section id="public-class-5Buntitled-5D-method-details" class="method-section section">
+      <h3 class="section-header">Public Class Methods</h3>
+
+    
+      <div id="method-c-new" class="method-detail ">
+        
+        <div class="method-heading">
+          <span class="method-name">new</span><span
+            class="method-args">(group,value,params)</span>
+          <span class="method-click-advice">click to toggle source</span>
+        </div>
+        
+
+        <div class="method-description">
+          
+          
+          
+
+          
+          <div class="method-source-code" id="new-source">
+            <pre><span class="ruby-comment"># File lib/area_chart/area_chart.rb, line 2</span>
+<span class="ruby-keyword">def</span> <span class="ruby-identifier">initialize</span>(<span class="ruby-identifier">group</span>,<span class="ruby-identifier">value</span>,<span class="ruby-identifier">params</span>)
+        <span class="ruby-ivar">@group</span>=<span class="ruby-identifier">check_grp</span>(<span class="ruby-identifier">group</span>)
+        <span class="ruby-ivar">@value</span>=<span class="ruby-identifier">check_val</span>(<span class="ruby-identifier">value</span>)
+        <span class="ruby-ivar">@params</span>=<span class="ruby-keyword">self</span>.<span class="ruby-identifier">check_par</span>(<span class="ruby-identifier">params</span>)
+<span class="ruby-keyword">end</span></pre>
+          </div><!-- new-source -->
+          
+        </div>
+
+        
+
+        
+      </div><!-- new-method -->
+
+    
+    </section><!-- public-class-method-details -->
+  
+     <section id="public-instance-5Buntitled-5D-method-details" class="method-section section">
+      <h3 class="section-header">Public Instance Methods</h3>
+
+    
+      <div id="method-i-check_par" class="method-detail ">
+        
+        <div class="method-heading">
+          <span class="method-name">check_par</span><span
+            class="method-args">(params)</span>
+          <span class="method-click-advice">click to toggle source</span>
+        </div>
+        
+
+        <div class="method-description">
+          
+          
+          
+
+          
+          <div class="method-source-code" id="check_par-source">
+            <pre><span class="ruby-comment"># File lib/area_chart/area_chart.rb, line 8</span>
+<span class="ruby-keyword">def</span> <span class="ruby-identifier">check_par</span>(<span class="ruby-identifier">params</span>)
+        <span class="ruby-identifier">hash</span> = <span class="ruby-constant">Hash</span>.<span class="ruby-identifier">new</span>
+        <span class="ruby-identifier">permitted</span> = [<span class="ruby-string">&quot;title&quot;</span>,<span class="ruby-string">&quot;x_label&quot;</span>,<span class="ruby-string">&quot;y_label&quot;</span>,<span class="ruby-string">&quot;vertical&quot;</span>,<span class="ruby-string">&quot;group_by&quot;</span>,<span class="ruby-string">&quot;legend&quot;</span>,<span class="ruby-string">&quot;width&quot;</span>,<span class="ruby-string">&quot;height&quot;</span>,<span class="ruby-string">&quot;file_name&quot;</span>]
+        <span class="ruby-identifier">keys</span> = <span class="ruby-identifier">params</span>.<span class="ruby-identifier">keys</span>
+        <span class="ruby-identifier">keys</span>.<span class="ruby-identifier">each</span>{ <span class="ruby-operator">|</span><span class="ruby-identifier">key</span><span class="ruby-operator">|</span>
+                 <span class="ruby-keyword">if</span> <span class="ruby-identifier">permitted</span>.<span class="ruby-identifier">include?</span>(<span class="ruby-identifier">key</span>)<span class="ruby-operator">==</span><span class="ruby-keyword">false</span>
+                        <span class="ruby-identifier">raise</span> <span class="ruby-string">&quot;Error : Permitted key are title,x_label,y_label,vertical,group_by,legend,width,height&quot;</span>
+                <span class="ruby-keyword">end</span>
+        }
+        
+        <span class="ruby-keyword">if</span> <span class="ruby-identifier">params</span>[<span class="ruby-string">&quot;title&quot;</span>]<span class="ruby-operator">==</span><span class="ruby-keyword">nil</span>
+                <span class="ruby-identifier">hash</span>[<span class="ruby-string">&quot;title&quot;</span>]=<span class="ruby-string">&quot;A sample Graph&quot;</span>
+        <span class="ruby-keyword">else</span>
+                 <span class="ruby-identifier">hash</span>[<span class="ruby-string">&quot;title&quot;</span>]=<span class="ruby-identifier">params</span>[<span class="ruby-string">&quot;title&quot;</span>]
+        <span class="ruby-keyword">end</span>
+
+        <span class="ruby-keyword">if</span> <span class="ruby-identifier">params</span>[<span class="ruby-string">&quot;x_label&quot;</span>]<span class="ruby-operator">==</span><span class="ruby-keyword">nil</span>
+                <span class="ruby-identifier">hash</span>[<span class="ruby-string">&quot;x_label&quot;</span>]=<span class="ruby-string">&quot;Categories&quot;</span>
+        <span class="ruby-keyword">else</span>
+                 <span class="ruby-identifier">hash</span>[<span class="ruby-string">&quot;x_label&quot;</span>]=<span class="ruby-identifier">params</span>[<span class="ruby-string">&quot;x_label&quot;</span>]
+        <span class="ruby-keyword">end</span>
+
+        <span class="ruby-keyword">if</span> <span class="ruby-identifier">params</span>[<span class="ruby-string">&quot;y_label&quot;</span>]<span class="ruby-operator">==</span><span class="ruby-keyword">nil</span>
+                <span class="ruby-identifier">hash</span>[<span class="ruby-string">&quot;y_label&quot;</span>]=<span class="ruby-string">&quot;Values&quot;</span>
+        <span class="ruby-keyword">else</span>
+                <span class="ruby-identifier">hash</span>[<span class="ruby-string">&quot;y_label&quot;</span>]=<span class="ruby-identifier">params</span>[<span class="ruby-string">&quot;y_label&quot;</span>]
+        <span class="ruby-keyword">end</span>
+
+        <span class="ruby-keyword">if</span> <span class="ruby-identifier">params</span>[<span class="ruby-string">&quot;vertical&quot;</span>]<span class="ruby-operator">==</span><span class="ruby-keyword">nil</span>
+                <span class="ruby-identifier">hash</span>[<span class="ruby-string">&quot;vertical&quot;</span>]=<span class="ruby-keyword">true</span>
+        <span class="ruby-keyword">else</span>
+                <span class="ruby-identifier">hash</span>[<span class="ruby-string">&quot;vertical&quot;</span>]=<span class="ruby-identifier">params</span>[<span class="ruby-string">&quot;vertical&quot;</span>]
+        <span class="ruby-keyword">end</span>
+
+       <span class="ruby-keyword">if</span> <span class="ruby-identifier">params</span>[<span class="ruby-string">&quot;legend&quot;</span>]<span class="ruby-operator">==</span><span class="ruby-keyword">nil</span>
+                <span class="ruby-identifier">hash</span>[<span class="ruby-string">&quot;legend&quot;</span>]=<span class="ruby-keyword">false</span>
+        <span class="ruby-keyword">else</span>
+                <span class="ruby-identifier">hash</span>[<span class="ruby-string">&quot;legend&quot;</span>]=<span class="ruby-identifier">params</span>[<span class="ruby-string">&quot;legend&quot;</span>]
+        <span class="ruby-keyword">end</span>
+        
+        <span class="ruby-keyword">if</span> <span class="ruby-identifier">params</span>[<span class="ruby-string">&quot;gruop_by&quot;</span>]<span class="ruby-operator">==</span><span class="ruby-keyword">nil</span>
+                <span class="ruby-identifier">hash</span>[<span class="ruby-string">&quot;group_by&quot;</span>]=<span class="ruby-keyword">nil</span>
+        <span class="ruby-keyword">else</span>
+                <span class="ruby-identifier">hash</span>[<span class="ruby-string">&quot;group_by&quot;</span>]=<span class="ruby-identifier">params</span>[<span class="ruby-string">&quot;group_by&quot;</span>]
+        <span class="ruby-keyword">end</span>
+
+        <span class="ruby-keyword">if</span> <span class="ruby-identifier">params</span>[<span class="ruby-string">&quot;width&quot;</span>]<span class="ruby-operator">==</span><span class="ruby-keyword">nil</span>
+                <span class="ruby-identifier">hash</span>[<span class="ruby-string">&quot;width&quot;</span>]=<span class="ruby-value">1500</span>
+        <span class="ruby-keyword">else</span>
+                <span class="ruby-identifier">hash</span>[<span class="ruby-string">&quot;width&quot;</span>]=<span class="ruby-identifier">params</span>[<span class="ruby-string">&quot;width&quot;</span>]
+        <span class="ruby-keyword">end</span>
+
+        <span class="ruby-keyword">if</span> <span class="ruby-identifier">params</span>[<span class="ruby-string">&quot;height&quot;</span>]<span class="ruby-operator">==</span><span class="ruby-keyword">nil</span>
+                <span class="ruby-identifier">hash</span>[<span class="ruby-string">&quot;height&quot;</span>]=<span class="ruby-value">800</span>
+        <span class="ruby-keyword">else</span>
+                <span class="ruby-identifier">hash</span>[<span class="ruby-string">&quot;height&quot;</span>]=<span class="ruby-identifier">params</span>[<span class="ruby-string">&quot;height&quot;</span>]
+        <span class="ruby-keyword">end</span>
+
+        <span class="ruby-keyword">if</span> <span class="ruby-identifier">params</span>[<span class="ruby-string">&quot;file_name&quot;</span>]<span class="ruby-operator">==</span><span class="ruby-keyword">nil</span>
+                <span class="ruby-identifier">hash</span>[<span class="ruby-string">&quot;file_name&quot;</span>]=<span class="ruby-string">&quot;sample.jpg&quot;</span>
+        <span class="ruby-keyword">else</span>
+                <span class="ruby-identifier">hash</span>[<span class="ruby-string">&quot;file_name&quot;</span>]=<span class="ruby-identifier">params</span>[<span class="ruby-string">&quot;file_name&quot;</span>]
+        <span class="ruby-keyword">end</span>
+
+        <span class="ruby-identifier">params_map</span> = <span class="ruby-constant">HashMap</span>.<span class="ruby-identifier">new</span>(<span class="ruby-identifier">hash</span>)
+        <span class="ruby-keyword">return</span> <span class="ruby-identifier">params_map</span>
+<span class="ruby-keyword">end</span></pre>
+          </div><!-- check_par-source -->
+          
+        </div>
+
+        
+
+        
+      </div><!-- check_par-method -->
+
+    
+      <div id="method-i-getGroup" class="method-detail ">
+        
+        <div class="method-heading">
+          <span class="method-name">getGroup</span><span
+            class="method-args">()</span>
+          <span class="method-click-advice">click to toggle source</span>
+        </div>
+        
+
+        <div class="method-description">
+          
+          
+          
+
+          
+          <div class="method-source-code" id="getGroup-source">
+            <pre><span class="ruby-comment"># File lib/area_chart/area_chart.rb, line 76</span>
+<span class="ruby-keyword">def</span> <span class="ruby-identifier">getGroup</span>
+        <span class="ruby-ivar">@group</span>
+<span class="ruby-keyword">end</span></pre>
+          </div><!-- getGroup-source -->
+          
+        </div>
+
+        
+
+        
+      </div><!-- getGroup-method -->
+
+    
+      <div id="method-i-getParams" class="method-detail ">
+        
+        <div class="method-heading">
+          <span class="method-name">getParams</span><span
+            class="method-args">()</span>
+          <span class="method-click-advice">click to toggle source</span>
+        </div>
+        
+
+        <div class="method-description">
+          
+          
+          
+
+          
+          <div class="method-source-code" id="getParams-source">
+            <pre><span class="ruby-comment"># File lib/area_chart/area_chart.rb, line 84</span>
+ <span class="ruby-keyword">def</span> <span class="ruby-identifier">getParams</span>
+        <span class="ruby-ivar">@params</span>
+<span class="ruby-keyword">end</span></pre>
+          </div><!-- getParams-source -->
+          
+        </div>
+
+        
+
+        
+      </div><!-- getParams-method -->
+
+    
+      <div id="method-i-getValue" class="method-detail ">
+        
+        <div class="method-heading">
+          <span class="method-name">getValue</span><span
+            class="method-args">()</span>
+          <span class="method-click-advice">click to toggle source</span>
+        </div>
+        
+
+        <div class="method-description">
+          
+          
+          
+
+          
+          <div class="method-source-code" id="getValue-source">
+            <pre><span class="ruby-comment"># File lib/area_chart/area_chart.rb, line 80</span>
+<span class="ruby-keyword">def</span> <span class="ruby-identifier">getValue</span>
+        <span class="ruby-ivar">@value</span> 
+<span class="ruby-keyword">end</span></pre>
+          </div><!-- getValue-source -->
+          
+        </div>
+
+        
+
+        
+      </div><!-- getValue-method -->
+
+    
+      <div id="method-i-save" class="method-detail ">
+        
+        <div class="method-heading">
+          <span class="method-name">save</span><span
+            class="method-args">()</span>
+          <span class="method-click-advice">click to toggle source</span>
+        </div>
+        
+
+        <div class="method-description">
+          
+          
+          
+
+          
+          <div class="method-source-code" id="save-source">
+            <pre><span class="ruby-comment"># File lib/area_chart/area_chart.rb, line 89</span>
+<span class="ruby-keyword">def</span> <span class="ruby-identifier">save</span>
+        <span class="ruby-keyword">begin</span>
+                <span class="ruby-identifier">a</span> = <span class="ruby-constant">Java</span><span class="ruby-operator">::</span><span class="ruby-constant">ComDomain</span><span class="ruby-operator">::</span><span class="ruby-identifier">clocomics</span>
+                <span class="ruby-identifier">a</span>.<span class="ruby-identifier">save_area</span>(<span class="ruby-keyword">self</span>.<span class="ruby-identifier">getGroup</span>,<span class="ruby-keyword">self</span>.<span class="ruby-identifier">getValue</span>,<span class="ruby-keyword">self</span>.<span class="ruby-identifier">getParams</span>)
+        <span class="ruby-keyword">rescue</span> <span class="ruby-constant">Exception</span> =<span class="ruby-operator">&gt;</span> <span class="ruby-identifier">ex</span>
+        <span class="ruby-keyword">end</span>
+<span class="ruby-keyword">end</span></pre>
+          </div><!-- save-source -->
+          
+        </div>
+
+        
+
+        
+      </div><!-- save-method -->
+
+    
+      <div id="method-i-view" class="method-detail ">
+        
+        <div class="method-heading">
+          <span class="method-name">view</span><span
+            class="method-args">()</span>
+          <span class="method-click-advice">click to toggle source</span>
+        </div>
+        
+
+        <div class="method-description">
+          
+          
+          
+
+          
+          <div class="method-source-code" id="view-source">
+            <pre><span class="ruby-comment"># File lib/area_chart/area_chart.rb, line 96</span>
+<span class="ruby-keyword">def</span> <span class="ruby-identifier">view</span>
+         <span class="ruby-keyword">begin</span>
+                <span class="ruby-identifier">a</span> = <span class="ruby-constant">Java</span><span class="ruby-operator">::</span><span class="ruby-constant">ComDomain</span><span class="ruby-operator">::</span><span class="ruby-identifier">clocomics</span>
+                <span class="ruby-identifier">a</span>.<span class="ruby-identifier">view_area</span>(<span class="ruby-keyword">self</span>.<span class="ruby-identifier">getGroup</span>,<span class="ruby-keyword">self</span>.<span class="ruby-identifier">getValue</span>,<span class="ruby-keyword">self</span>.<span class="ruby-identifier">getParams</span>)
+        <span class="ruby-keyword">rescue</span> <span class="ruby-constant">Exception</span> =<span class="ruby-operator">&gt;</span> <span class="ruby-identifier">ex</span>
+        <span class="ruby-keyword">end</span>
+
+
+<span class="ruby-keyword">end</span></pre>
+          </div><!-- view-source -->
+          
+        </div>
+
+        
+
+        
+      </div><!-- view-method -->
+
+    
+    </section><!-- public-instance-method-details -->
+  
+  </section><!-- 5Buntitled-5D -->
+
+</div><!-- documentation -->
+
+
+<footer id="validator-badges">
+  <p><a href="http://validator.w3.org/check/referer">[Validate]</a>
+  <p>Generated by <a href="https://github.com/rdoc/rdoc">RDoc</a> 3.12.
+  <p>Generated with the <a href="http://deveiate.org/projects/Darkfish-Rdoc/">Darkfish Rdoc Generator</a> 3.
+</footer>
+