bio-incanter 0.1.0

data/doc/js/search.js

@@ -0,0 +1,94 @@
+Search = function(data, input, result) {
+  this.data = data;
+  this.$input = $(input);
+  this.$result = $(result);
+
+  this.$current = null;
+  this.$view = this.$result.parent();
+  this.searcher = new Searcher(data.index);
+  this.init();
+}
+
+Search.prototype = $.extend({}, Navigation, new function() {
+  var suid = 1;
+
+  this.init = function() {
+    var _this = this;
+    var observer = function() {
+      _this.search(_this.$input[0].value);
+    };
+    this.$input.keyup(observer);
+    this.$input.click(observer); // mac's clear field
+
+    this.searcher.ready(function(results, isLast) {
+      _this.addResults(results, isLast);
+    })
+
+    this.initNavigation();
+    this.setNavigationActive(false);
+  }
+
+  this.search = function(value, selectFirstMatch) {
+    value = jQuery.trim(value).toLowerCase();
+    if (value) {
+      this.setNavigationActive(true);
+    } else {
+      this.setNavigationActive(false);
+    }
+
+    if (value == '') {
+      this.lastQuery = value;
+      this.$result.empty();
+      this.setNavigationActive(false);
+    } else if (value != this.lastQuery) {
+      this.lastQuery = value;
+      this.firstRun = true;
+      this.searcher.find(value);
+    }
+  }
+
+  this.addResults = function(results, isLast) {
+    var target = this.$result.get(0);
+    if (this.firstRun && (results.length > 0 || isLast)) {
+      this.$current = null;
+      this.$result.empty();
+    }
+
+    for (var i=0, l = results.length; i < l; i++) {
+      target.appendChild(this.renderItem.call(this, results[i]));
+    };
+
+    if (this.firstRun && results.length > 0) {
+      this.firstRun = false;
+      this.$current = $(target.firstChild);
+      this.$current.addClass('current');
+    }
+    if (jQuery.browser.msie) this.$element[0].className += '';
+  }
+
+  this.move = function(isDown) {
+    if (!this.$current) return;
+    var $next = this.$current[isDown ? 'next' : 'prev']();
+    if ($next.length) {
+      this.$current.removeClass('current');
+      $next.addClass('current');
+      this.scrollIntoView($next[0], this.$view[0]);
+      this.$current = $next;
+    }
+    return true;
+  }
+
+  this.hlt = function(html) {
+    return this.escapeHTML(html).
+      replace(/\u0001/g, '<em>').
+      replace(/\u0002/g, '</em>');
+  }
+
+  this.escapeHTML = function(html) {
+    return html.replace(/[&<>]/g, function(c) {
+      return '&#' + c.charCodeAt(0) + ';';
+    });
+  }
+
+});
+

data/doc/js/search_index.js

@@ -0,0 +1 @@
+var search_data = {"index":{"searchIndex":["areachart","barchart","blandaltman","boxplot","functionplot","heatmap","histogram","linechart","object","piechart","scatterplot","timechart","traceplot","xyplot","check_grp()","check_par()","check_par()","check_par()","check_par()","check_par()","check_par()","check_par()","check_par()","check_par()","check_par()","check_par()","check_par()","check_par()","check_val()","check_val_int()","getfunction()","getfunction()","getgroup()","getgroup()","getgroup()","getgroup()","getgroup()","getgroup()","getmax()","getmaxx()","getmaxy()","getmin()","getminx()","getminy()","getparams()","getparams()","getparams()","getparams()","getparams()","getparams()","getparams()","getparams()","getparams()","getparams()","getparams()","getparams()","getparams()","getvalue()","getvalue()","getvalue()","getvalue()","getvalue()","getvalue()","getvalue()","getvalue()","getvaluex()","getvaluex()","getvaluey()","getvaluey()","getx()","gety()","new()","new()","new()","new()","new()","new()","new()","new()","new()","new()","new()","new()","new()","save()","save()","save()","save()","save()","save()","save()","save()","save()","save()","save()","save()","save()","view()","view()","view()","view()","view()","view()","view()","view()","view()","view()","view()","view()","view()","license","readme"],"longSearchIndex":["areachart","barchart","blandaltman","boxplot","functionplot","heatmap","histogram","linechart","object","piechart","scatterplot","timechart","traceplot","xyplot","object#check_grp()","areachart#check_par()","barchart#check_par()","blandaltman#check_par()","boxplot#check_par()","functionplot#check_par()","heatmap#check_par()","histogram#check_par()","linechart#check_par()","piechart#check_par()","scatterplot#check_par()","timechart#check_par()","traceplot#check_par()","xyplot#check_par()","object#check_val()","object#check_val_int()","functionplot#getfunction()","heatmap#getfunction()","areachart#getgroup()","barchart#getgroup()","blandaltman#getgroup()","boxplot#getgroup()","linechart#getgroup()","piechart#getgroup()","functionplot#getmax()","heatmap#getmaxx()","heatmap#getmaxy()","functionplot#getmin()","heatmap#getminx()","heatmap#getminy()","areachart#getparams()","barchart#getparams()","blandaltman#getparams()","boxplot#getparams()","functionplot#getparams()","heatmap#getparams()","histogram#getparams()","linechart#getparams()","piechart#getparams()","scatterplot#getparams()","timechart#getparams()","traceplot#getparams()","xyplot#getparams()","areachart#getvalue()","barchart#getvalue()","blandaltman#getvalue()","boxplot#getvalue()","histogram#getvalue()","linechart#getvalue()","piechart#getvalue()","traceplot#getvalue()","scatterplot#getvaluex()","xyplot#getvaluex()","scatterplot#getvaluey()","xyplot#getvaluey()","timechart#getx()","timechart#gety()","areachart::new()","barchart::new()","blandaltman::new()","boxplot::new()","functionplot::new()","heatmap::new()","histogram::new()","linechart::new()","piechart::new()","scatterplot::new()","timechart::new()","traceplot::new()","xyplot::new()","areachart#save()","barchart#save()","blandaltman#save()","boxplot#save()","functionplot#save()","heatmap#save()","histogram#save()","linechart#save()","piechart#save()","scatterplot#save()","timechart#save()","traceplot#save()","xyplot#save()","areachart#view()","barchart#view()","blandaltman#view()","boxplot#view()","functionplot#view()","heatmap#view()","histogram#view()","linechart#view()","piechart#view()","scatterplot#view()","timechart#view()","traceplot#view()","xyplot#view()","",""],"info":[["AreaChart","","AreaChart.html","",""],["BarChart","","BarChart.html","",""],["BlandAltman","","BlandAltman.html","",""],["BoxPlot","","BoxPlot.html","",""],["FunctionPlot","","FunctionPlot.html","",""],["HeatMap","","HeatMap.html","",""],["Histogram","","Histogram.html","",""],["LineChart","","LineChart.html","",""],["Object","","Object.html","",""],["PieChart","","PieChart.html","",""],["ScatterPlot","","ScatterPlot.html","",""],["TimeChart","","TimeChart.html","",""],["TracePlot","","TracePlot.html","",""],["XyPlot","","XyPlot.html","",""],["check_grp","Object","Object.html#method-i-check_grp","(grp)",""],["check_par","AreaChart","AreaChart.html#method-i-check_par","(params)",""],["check_par","BarChart","BarChart.html#method-i-check_par","(params)",""],["check_par","BlandAltman","BlandAltman.html#method-i-check_par","(params)",""],["check_par","BoxPlot","BoxPlot.html#method-i-check_par","(params)",""],["check_par","FunctionPlot","FunctionPlot.html#method-i-check_par","(params)",""],["check_par","HeatMap","HeatMap.html#method-i-check_par","(params)",""],["check_par","Histogram","Histogram.html#method-i-check_par","(params)",""],["check_par","LineChart","LineChart.html#method-i-check_par","(params)",""],["check_par","PieChart","PieChart.html#method-i-check_par","(params)",""],["check_par","ScatterPlot","ScatterPlot.html#method-i-check_par","(params)",""],["check_par","TimeChart","TimeChart.html#method-i-check_par","(params)",""],["check_par","TracePlot","TracePlot.html#method-i-check_par","(params)",""],["check_par","XyPlot","XyPlot.html#method-i-check_par","(params)",""],["check_val","Object","Object.html#method-i-check_val","(value)",""],["check_val_int","Object","Object.html#method-i-check_val_int","(value)",""],["getFunction","FunctionPlot","FunctionPlot.html#method-i-getFunction","()",""],["getFunction","HeatMap","HeatMap.html#method-i-getFunction","()",""],["getGroup","AreaChart","AreaChart.html#method-i-getGroup","()",""],["getGroup","BarChart","BarChart.html#method-i-getGroup","()",""],["getGroup","BlandAltman","BlandAltman.html#method-i-getGroup","()",""],["getGroup","BoxPlot","BoxPlot.html#method-i-getGroup","()",""],["getGroup","LineChart","LineChart.html#method-i-getGroup","()",""],["getGroup","PieChart","PieChart.html#method-i-getGroup","()",""],["getMax","FunctionPlot","FunctionPlot.html#method-i-getMax","()",""],["getMaxX","HeatMap","HeatMap.html#method-i-getMaxX","()",""],["getMaxY","HeatMap","HeatMap.html#method-i-getMaxY","()",""],["getMin","FunctionPlot","FunctionPlot.html#method-i-getMin","()",""],["getMinX","HeatMap","HeatMap.html#method-i-getMinX","()",""],["getMinY","HeatMap","HeatMap.html#method-i-getMinY","()",""],["getParams","AreaChart","AreaChart.html#method-i-getParams","()",""],["getParams","BarChart","BarChart.html#method-i-getParams","()",""],["getParams","BlandAltman","BlandAltman.html#method-i-getParams","()",""],["getParams","BoxPlot","BoxPlot.html#method-i-getParams","()",""],["getParams","FunctionPlot","FunctionPlot.html#method-i-getParams","()",""],["getParams","HeatMap","HeatMap.html#method-i-getParams","()",""],["getParams","Histogram","Histogram.html#method-i-getParams","()",""],["getParams","LineChart","LineChart.html#method-i-getParams","()",""],["getParams","PieChart","PieChart.html#method-i-getParams","()",""],["getParams","ScatterPlot","ScatterPlot.html#method-i-getParams","()",""],["getParams","TimeChart","TimeChart.html#method-i-getParams","()",""],["getParams","TracePlot","TracePlot.html#method-i-getParams","()",""],["getParams","XyPlot","XyPlot.html#method-i-getParams","()",""],["getValue","AreaChart","AreaChart.html#method-i-getValue","()",""],["getValue","BarChart","BarChart.html#method-i-getValue","()",""],["getValue","BlandAltman","BlandAltman.html#method-i-getValue","()",""],["getValue","BoxPlot","BoxPlot.html#method-i-getValue","()",""],["getValue","Histogram","Histogram.html#method-i-getValue","()",""],["getValue","LineChart","LineChart.html#method-i-getValue","()",""],["getValue","PieChart","PieChart.html#method-i-getValue","()",""],["getValue","TracePlot","TracePlot.html#method-i-getValue","()",""],["getValuex","ScatterPlot","ScatterPlot.html#method-i-getValuex","()",""],["getValuex","XyPlot","XyPlot.html#method-i-getValuex","()",""],["getValuey","ScatterPlot","ScatterPlot.html#method-i-getValuey","()",""],["getValuey","XyPlot","XyPlot.html#method-i-getValuey","()",""],["getX","TimeChart","TimeChart.html#method-i-getX","()",""],["getY","TimeChart","TimeChart.html#method-i-getY","()",""],["new","AreaChart","AreaChart.html#method-c-new","(group,value,params)",""],["new","BarChart","BarChart.html#method-c-new","(group,value,params)","<p>Attributes  \n<p><code>group</code> - a vector of String categories\n<p><code>value</code> - a vector of Float numeric value\n"],["new","BlandAltman","BlandAltman.html#method-c-new","(group,value,params)",""],["new","BoxPlot","BoxPlot.html#method-c-new","(group,value,params)",""],["new","FunctionPlot","FunctionPlot.html#method-c-new","(function,min,max,params)",""],["new","HeatMap","HeatMap.html#method-c-new","(function,min_x,max_x,min_y,max_y,params)",""],["new","Histogram","Histogram.html#method-c-new","(value,params)",""],["new","LineChart","LineChart.html#method-c-new","(group,value,params)",""],["new","PieChart","PieChart.html#method-c-new","(group,value,params)",""],["new","ScatterPlot","ScatterPlot.html#method-c-new","(valuex,valuey,params)",""],["new","TimeChart","TimeChart.html#method-c-new","(x,y,params)",""],["new","TracePlot","TracePlot.html#method-c-new","(value,params)",""],["new","XyPlot","XyPlot.html#method-c-new","(valuex,valuey,params)",""],["save","AreaChart","AreaChart.html#method-i-save","()",""],["save","BarChart","BarChart.html#method-i-save","()",""],["save","BlandAltman","BlandAltman.html#method-i-save","()",""],["save","BoxPlot","BoxPlot.html#method-i-save","()",""],["save","FunctionPlot","FunctionPlot.html#method-i-save","()",""],["save","HeatMap","HeatMap.html#method-i-save","()",""],["save","Histogram","Histogram.html#method-i-save","()",""],["save","LineChart","LineChart.html#method-i-save","()",""],["save","PieChart","PieChart.html#method-i-save","()",""],["save","ScatterPlot","ScatterPlot.html#method-i-save","()",""],["save","TimeChart","TimeChart.html#method-i-save","()",""],["save","TracePlot","TracePlot.html#method-i-save","()",""],["save","XyPlot","XyPlot.html#method-i-save","()",""],["view","AreaChart","AreaChart.html#method-i-view","()",""],["view","BarChart","BarChart.html#method-i-view","()",""],["view","BlandAltman","BlandAltman.html#method-i-view","()",""],["view","BoxPlot","BoxPlot.html#method-i-view","()",""],["view","FunctionPlot","FunctionPlot.html#method-i-view","()",""],["view","HeatMap","HeatMap.html#method-i-view","()",""],["view","Histogram","Histogram.html#method-i-view","()",""],["view","LineChart","LineChart.html#method-i-view","()",""],["view","PieChart","PieChart.html#method-i-view","()",""],["view","ScatterPlot","ScatterPlot.html#method-i-view","()",""],["view","TimeChart","TimeChart.html#method-i-view","()",""],["view","TracePlot","TracePlot.html#method-i-view","()",""],["view","XyPlot","XyPlot.html#method-i-view","()",""],["LICENSE","","LICENSE_txt.html","","<p>Copyright © 2012 Matteo Picciolini\n<p>Permission is hereby granted, free of charge, to any person obtaining …\n"],["README","","README_rdoc.html","","<p>bio-incanter\n<p>bio-incanter is a Jruby bio-gem for use Incanter lib. Incanter is a Clojure\nlib to save and …\n"]]}}

data/doc/js/searcher.js

@@ -0,0 +1,228 @@
+Searcher = function(data) {
+  this.data = data;
+  this.handlers = [];
+}
+
+Searcher.prototype = new function() {
+  // search is performed in chunks of 1000 for non-blocking user input
+  var CHUNK_SIZE = 1000;
+  // do not try to find more than 100 results
+  var MAX_RESULTS = 100;
+  var huid = 1;
+  var suid = 1;
+  var runs = 0;
+
+  this.find = function(query) {
+    var queries = splitQuery(query);
+    var regexps = buildRegexps(queries);
+    var highlighters = buildHilighters(queries);
+    var state = { from: 0, pass: 0, limit: MAX_RESULTS, n: suid++};
+    var _this = this;
+
+    this.currentSuid = state.n;
+
+    if (!query) return;
+
+    var run = function() {
+      // stop current search thread if new search started
+      if (state.n != _this.currentSuid) return;
+
+      var results =
+        performSearch(_this.data, regexps, queries, highlighters, state);
+      var hasMore = (state.limit > 0 && state.pass < 4);
+
+      triggerResults.call(_this, results, !hasMore);
+      if (hasMore) {
+        setTimeout(run, 2);
+      }
+      runs++;
+    };
+    runs = 0;
+
+    // start search thread
+    run();
+  }
+
+  /*  ----- Events ------  */
+  this.ready = function(fn) {
+    fn.huid = huid;
+    this.handlers.push(fn);
+  }
+
+  /*  ----- Utilities ------  */
+  function splitQuery(query) {
+    return jQuery.grep(query.split(/(\s+|::?|\(\)?)/), function(string) {
+      return string.match(/\S/)
+    });
+  }
+
+  function buildRegexps(queries) {
+    return jQuery.map(queries, function(query) {
+      return new RegExp(query.replace(/(.)/g, '([$1])([^$1]*?)'), 'i')
+    });
+  }
+
+  function buildHilighters(queries) {
+    return jQuery.map(queries, function(query) {
+      return jQuery.map(query.split(''), function(l, i) {
+        return '\u0001$' + (i*2+1) + '\u0002$' + (i*2+2);
+      }).join('');
+    });
+  }
+
+  // function longMatchRegexp(index, longIndex, regexps) {
+  //     for (var i = regexps.length - 1; i >= 0; i--){
+  //         if (!index.match(regexps[i]) && !longIndex.match(regexps[i])) return false;
+  //     };
+  //     return true;
+  // }
+
+
+  /*  ----- Mathchers ------  */
+
+  /*
+   * This record matches if the index starts with queries[0] and the record
+   * matches all of the regexps
+   */
+  function matchPassBeginning(index, longIndex, queries, regexps) {
+    if (index.indexOf(queries[0]) != 0) return false;
+    for (var i=1, l = regexps.length; i < l; i++) {
+      if (!index.match(regexps[i]) && !longIndex.match(regexps[i]))
+        return false;
+    };
+    return true;
+  }
+
+  /*
+   * This record matches if the longIndex starts with queries[0] and the
+   * longIndex matches all of the regexps
+   */
+  function matchPassLongIndex(index, longIndex, queries, regexps) {
+    if (longIndex.indexOf(queries[0]) != 0) return false;
+    for (var i=1, l = regexps.length; i < l; i++) {
+      if (!longIndex.match(regexps[i]))
+        return false;
+    };
+    return true;
+  }
+
+  /*
+   * This record matches if the index contains queries[0] and the record
+   * matches all of the regexps
+   */
+  function matchPassContains(index, longIndex, queries, regexps) {
+    if (index.indexOf(queries[0]) == -1) return false;
+    for (var i=1, l = regexps.length; i < l; i++) {
+      if (!index.match(regexps[i]) && !longIndex.match(regexps[i]))
+        return false;
+    };
+    return true;
+  }
+
+  /*
+   * This record matches if regexps[0] matches the index and the record
+   * matches all of the regexps
+   */
+  function matchPassRegexp(index, longIndex, queries, regexps) {
+    if (!index.match(regexps[0])) return false;
+    for (var i=1, l = regexps.length; i < l; i++) {
+      if (!index.match(regexps[i]) && !longIndex.match(regexps[i]))
+        return false;
+    };
+    return true;
+  }
+
+
+  /*  ----- Highlighters ------  */
+  function highlightRegexp(info, queries, regexps, highlighters) {
+    var result = createResult(info);
+    for (var i=0, l = regexps.length; i < l; i++) {
+      result.title = result.title.replace(regexps[i], highlighters[i]);
+      result.namespace = result.namespace.replace(regexps[i], highlighters[i]);
+    };
+    return result;
+  }
+
+  function hltSubstring(string, pos, length) {
+    return string.substring(0, pos) + '\u0001' + string.substring(pos, pos + length) + '\u0002' + string.substring(pos + length);
+  }
+
+  function highlightQuery(info, queries, regexps, highlighters) {
+    var result = createResult(info);
+    var pos = 0;
+    var lcTitle = result.title.toLowerCase();
+
+    pos = lcTitle.indexOf(queries[0]);
+    if (pos != -1) {
+      result.title = hltSubstring(result.title, pos, queries[0].length);
+    }
+
+    result.namespace = result.namespace.replace(regexps[0], highlighters[0]);
+    for (var i=1, l = regexps.length; i < l; i++) {
+      result.title = result.title.replace(regexps[i], highlighters[i]);
+      result.namespace = result.namespace.replace(regexps[i], highlighters[i]);
+    };
+    return result;
+  }
+
+  function createResult(info) {
+    var result = {};
+    result.title = info[0];
+    result.namespace = info[1];
+    result.path = info[2];
+    result.params = info[3];
+    result.snippet = info[4];
+    return result;
+  }
+
+  /*  ----- Searching ------  */
+  function performSearch(data, regexps, queries, highlighters, state) {
+    var searchIndex = data.searchIndex;
+    var longSearchIndex = data.longSearchIndex;
+    var info = data.info;
+    var result = [];
+    var i = state.from;
+    var l = searchIndex.length;
+    var togo = CHUNK_SIZE;
+    var matchFunc, hltFunc;
+
+    while (state.pass < 4 && state.limit > 0 && togo > 0) {
+      if (state.pass == 0) {
+        matchFunc = matchPassBeginning;
+        hltFunc = highlightQuery;
+      } else if (state.pass == 1) {
+        matchFunc = matchPassLongIndex;
+        hltFunc = highlightQuery;
+      } else if (state.pass == 2) {
+        matchFunc = matchPassContains;
+        hltFunc = highlightQuery;
+      } else if (state.pass == 3) {
+        matchFunc = matchPassRegexp;
+        hltFunc = highlightRegexp;
+      }
+
+      for (; togo > 0 && i < l && state.limit > 0; i++, togo--) {
+        if (info[i].n == state.n) continue;
+        if (matchFunc(searchIndex[i], longSearchIndex[i], queries, regexps)) {
+          info[i].n = state.n;
+          result.push(hltFunc(info[i], queries, regexps, highlighters));
+          state.limit--;
+        }
+      };
+      if (searchIndex.length <= i) {
+        state.pass++;
+        i = state.from = 0;
+      } else {
+        state.from = i;
+      }
+    }
+    return result;
+  }
+
+  function triggerResults(results, isLast) {
+    jQuery.each(this.handlers, function(i, fn) {
+      fn.call(this, results, isLast)
+    })
+  }
+}
+

data/doc/rdoc.css

@@ -0,0 +1,543 @@
+/*
+ * "Darkfish" Rdoc CSS
+ * $Id: rdoc.css 54 2009-01-27 01:09:48Z deveiant $
+ *
+ * Author: Michael Granger <ged@FaerieMUD.org>
+ *
+ */
+
+/* Base Green is: #6C8C22 */
+
+* { padding: 0; margin: 0; }
+
+body {
+  background: #efefef;
+  font: 14px "Helvetica Neue", Helvetica, Tahoma, sans-serif;
+  margin-left: 40px;
+}
+body.file-popup {
+  font-size: 90%;
+  margin-left: 0;
+}
+
+h1 {
+  font-size: 300%;
+  text-shadow: rgba(135,145,135,0.65) 2px 2px 3px;
+  color: #6C8C22;
+}
+h2,h3,h4 { margin-top: 1.5em; }
+
+:link,
+:visited {
+  color: #6C8C22;
+  text-decoration: none;
+}
+:link:hover,
+:visited:hover {
+  border-bottom: 1px dotted #6C8C22;
+}
+
+pre {
+  background: #ddd;
+  padding: 0.5em 0;
+}
+
+/* @group Generic Classes */
+
+.initially-hidden {
+  display: none;
+}
+
+#search-field {
+  width: 98%;
+  background: #eee;
+  border: none;
+  height: 1.5em;
+  -webkit-border-radius: 4px;
+}
+#search-field:focus {
+  background: #f1edba;
+}
+#search-field:-moz-placeholder,
+#search-field::-webkit-input-placeholder {
+  font-weight: bold;
+  color: #666;
+}
+
+.missing-docs {
+  font-size: 120%;
+  background: white url(images/wrench_orange.png) no-repeat 4px center;
+  color: #ccc;
+  line-height: 2em;
+  border: 1px solid #d00;
+  opacity: 1;
+  padding-left: 20px;
+  text-indent: 24px;
+  letter-spacing: 3px;
+  font-weight: bold;
+  -webkit-border-radius: 5px;
+  -moz-border-radius: 5px;
+}
+
+.target-section {
+  border: 2px solid #dcce90;
+  border-left-width: 8px;
+  padding: 0 1em;
+  background: #fff3c2;
+}
+
+/* @end */
+
+/* @group Index Page, Standalone file pages */
+.indexpage ul {
+  line-height: 160%;
+  list-style: none;
+}
+.indexpage ul :link,
+.indexpage ul :visited {
+  font-size: 16px;
+}
+
+.indexpage li {
+  padding-left: 20px;
+}
+
+.indexpage ul > li {
+  background: url(images/bullet_black.png) no-repeat left 4px;
+}
+.indexpage li.method {
+  background: url(images/plugin.png) no-repeat left 4px;
+}
+.indexpage li.module {
+  background: url(images/package.png) no-repeat left 4px;
+}
+.indexpage li.class {
+  background: url(images/ruby.png) no-repeat left 4px;
+}
+.indexpage li.file {
+  background: url(images/page_white_text.png) no-repeat left 4px;
+}
+.indexpage li li {
+  background: url(images/tag_blue.png) no-repeat left 4px;
+}
+.indexpage li .toc-toggle {
+  width: 16px;
+  height: 16px;
+  background: url(images/add.png) no-repeat;
+}
+
+.indexpage li .toc-toggle.open {
+  background: url(images/delete.png) no-repeat;
+}
+
+/* @end */
+
+/* @group Top-Level Structure */
+
+#metadata {
+  float: left;
+  width: 260px;
+}
+
+#documentation {
+  margin: 2em 1em 5em 300px;
+  min-width: 340px;
+}
+
+#validator-badges {
+  clear: both;
+  margin: 1em 1em 2em;
+  font-size: smaller;
+}
+
+/* @end */
+
+/* @group Metadata Section */
+#metadata .section {
+  background-color: #dedede;
+  -moz-border-radius: 5px;
+  -webkit-border-radius: 5px;
+  border: 1px solid #aaa;
+  margin: 0 8px 8px;
+  font-size: 90%;
+  overflow: hidden;
+}
+#metadata h3.section-header {
+  margin: 0;
+  padding: 2px 8px;
+  background: #ccc;
+  color: #666;
+  -moz-border-radius-topleft: 4px;
+  -moz-border-radius-topright: 4px;
+  -webkit-border-top-left-radius: 4px;
+  -webkit-border-top-right-radius: 4px;
+  border-bottom: 1px solid #aaa;
+}
+#metadata #home-section h3.section-header {
+  border-bottom: 0;
+}
+
+#metadata ul,
+#metadata dl,
+#metadata p {
+  padding:  8px;
+  list-style: none;
+}
+
+#file-metadata {
+  margin-top: 2em;
+}
+
+#file-metadata ul {
+  padding-left: 28px;
+  list-style-image: url(images/page_green.png);
+}
+
+dl.svninfo {
+  color: #666;
+  margin: 0;
+}
+dl.svninfo dt {
+  font-weight: bold;
+}
+
+ul.link-list li {
+  white-space: nowrap;
+}
+ul.link-list .type {
+  font-size: 8px;
+  text-transform: uppercase;
+  color: white;
+  background: #969696;
+  padding: 2px 4px;
+  -webkit-border-radius: 5px;
+}
+
+/* @end */
+
+/* @group Class Metadata Section */
+#class-metadata {
+  margin-top: 2em;
+}
+/* @end */
+
+/* @group Project Metadata Section */
+#project-metadata {
+  margin-top: 2em;
+}
+
+#project-metadata .section {
+  border: 1px solid #aaa;
+}
+#project-metadata h3.section-header {
+  border-bottom: 1px solid #aaa;
+  position: relative;
+}
+
+#project-metadata form {
+  color: #777;
+  background: #ccc;
+}
+
+/* @end */
+
+/* @group Documentation Section */
+.description {
+  font-size: 100%;
+  color: #333;
+}
+
+.description p {
+  margin: 1em 0.4em;
+}
+
+.description li p {
+  margin: 0;
+}
+
+.description ol,
+.description ul {
+  margin-left: 1.5em;
+}
+.description ol li,
+.description ul li {
+  line-height: 1.4em;
+}
+
+.note-list {
+  margin: 8px 0;
+}
+
+.label-list {
+  margin: 8px 1.5em;
+  border: 1px solid #ccc;
+}
+.description .label-list {
+  font-size: 14px;
+}
+
+.note-list dt {
+  font-weight: bold;
+}
+.note-list dd {
+  padding: 0 12px;
+}
+
+.label-list dt {
+  padding: 2px 4px;
+  font-weight: bold;
+  background: #ddd;
+}
+.label-list dd {
+  padding: 2px 12px;
+}
+.label-list dd + dt,
+.note-list dd + dt {
+  margin-top: 0.7em;
+}
+
+#documentation .section {
+  font-size: 90%;
+}
+
+#documentation h2.section-header {
+  margin-top: 1em;
+  padding: 0.25em 0.5em;
+  background: #ccc;
+  color: #333;
+  font-size: 175%;
+  border: 1px solid #bbb;
+  -moz-border-radius: 3px;
+  -webkit-border-radius: 3px;
+}
+
+.documentation-section-title {
+  position: relative;
+}
+.documentation-section-title .section-click-top {
+  position: absolute;
+  top: 6px;
+  right: 12px;
+  font-size: 10px;
+  color: #9b9877;
+  visibility: hidden;
+  padding-right: 0.5px;
+}
+
+.documentation-section-title:hover .section-click-top {
+  visibility: visible;
+}
+
+#documentation h3.section-header {
+  margin-top: 1em;
+  padding: 0.25em 0.5em;
+  background-color: #dedede;
+  color: #333;
+  font-size: 150%;
+  border: 1px solid #bbb;
+  -moz-border-radius: 3px;
+  -webkit-border-radius: 3px;
+}
+
+#constants-list > dl,
+#attributes-list > dl {
+  margin: 1em 0 2em;
+  border: 0;
+}
+#constants-list > dl dt,
+#attributes-list > dl dt {
+  padding-left: 0;
+  font-weight: bold;
+  font-family: Monaco, "Andale Mono";
+  background: inherit;
+}
+#constants-list > dl dt a,
+#attributes-list > dl dt a {
+  color: inherit;
+}
+#constants-list > dl dd,
+#attributes-list > dl dd {
+  margin: 0 0 1em 0;
+  padding: 0;
+  color: #666;
+}
+
+.documentation-section h2 {
+  position: relative;
+}
+
+.documentation-section h2 a {
+  position: absolute;
+  top: 8px;
+  right: 10px;
+  font-size: 12px;
+  color: #9b9877;
+  visibility: hidden;
+}
+
+.documentation-section h2:hover a {
+  visibility: visible;
+}
+
+/* @group Method Details */
+
+#documentation .method-source-code {
+  display: none;
+}
+
+#documentation .method-detail {
+  margin: 0.5em 0;
+  padding: 0.5em 0;
+  cursor: pointer;
+}
+#documentation .method-detail:hover {
+  background-color: #f1edba;
+}
+#documentation .method-heading {
+  position: relative;
+  padding: 2px 4px 0 20px;
+  font-size: 125%;
+  font-weight: bold;
+  color: #333;
+  background: url(images/brick.png) no-repeat left bottom;
+}
+#documentation .method-heading :link,
+#documentation .method-heading :visited {
+  color: inherit;
+}
+#documentation .method-click-advice {
+  position: absolute;
+  top: 2px;
+  right: 5px;
+  font-size: 10px;
+  color: #9b9877;
+  visibility: hidden;
+  padding-right: 20px;
+  line-height: 20px;
+  background: url(images/zoom.png) no-repeat right top;
+}
+#documentation .method-heading:hover .method-click-advice {
+  visibility: visible;
+}
+
+#documentation .method-alias .method-heading {
+  color: #666;
+  background: url(images/brick_link.png) no-repeat left bottom;
+}
+
+#documentation .method-description,
+#documentation .aliases {
+  margin: 0 20px;
+  color: #666;
+}
+
+#documentation .method-description p,
+#documentation .aliases p {
+  line-height: 1.2em;
+}
+
+#documentation .aliases {
+  padding-top: 4px;
+  font-style: italic;
+  cursor: default;
+}
+#documentation .method-description p {
+  margin-bottom: 0.5em;
+}
+#documentation .method-description ul {
+  margin-left: 1.5em;
+}
+pre {
+  margin: 0.5em 0;
+}
+
+#documentation .attribute-method-heading {
+  background: url(images/tag_green.png) no-repeat left bottom;
+}
+#documentation #attribute-method-details .method-detail:hover {
+  background-color: transparent;
+  cursor: default;
+}
+#documentation .attribute-access-type {
+  font-size: 60%;
+  text-transform: uppercase;
+  vertical-align: super;
+  padding: 0 2px;
+}
+/* @end */
+
+/* @end */
+
+/* @group Source Code */
+
+pre {
+  overflow: auto;
+  background: #262626;
+  color: white;
+  border: 1px dashed #999;
+  padding: 0.5em;
+}
+
+.description pre {
+  margin: 0 0.4em;
+}
+
+.ruby-constant   { color: #7fffd4; background: transparent; }
+.ruby-keyword    { color: #00ffff; background: transparent; }
+.ruby-ivar       { color: #eedd82; background: transparent; }
+.ruby-operator   { color: #00ffee; background: transparent; }
+.ruby-identifier { color: #ffdead; background: transparent; }
+.ruby-node       { color: #ffa07a; background: transparent; }
+.ruby-comment    { color: #dc0000; font-weight: bold; background: transparent; }
+.ruby-regexp     { color: #ffa07a; background: transparent; }
+.ruby-value      { color: #7fffd4; background: transparent; }
+
+/* @end */
+
+
+/* @group search results */
+#search-results h1 {
+  font-size: 1em;
+  font-weight: normal;
+  text-shadow: none;
+}
+
+#search-results .current {
+  background: #ccc;
+  border-bottom: 1px solid transparent;
+}
+
+#search-results li {
+  list-style: none;
+  border-bottom: 1px solid #aaa;
+  -moz-border-radius: 4px;
+  -webkit-border-radius: 4px;
+  border-radius: 4px;
+  margin-bottom: 0.5em;
+}
+
+#search-results li:last-child {
+  border-bottom: none;
+  margin-bottom: 0;
+}
+
+#search-results li p {
+  padding: 0;
+  margin: 0.5em;
+}
+
+#search-results .search-namespace {
+  font-weight: bold;
+}
+
+#search-results li em {
+  background: yellow;
+  font-style: normal;
+}
+
+#search-results pre {
+  margin: 0.5em;
+}
+
+/* @end */
+