bio-incanter 0.1.0

data/spec/bar_chart_spec.rb

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+require File.expand_path(File.dirname(__FILE__) + '/spec_helper')
+
+describe "BarChart" do
+
+before :each do
+    @categories = ["uman","elf","dwarfs"]
+    @values = [1.0,2.0,3.0]
+    @params = {"title" => "Popolation of middle heart","x_label"=>"Popolation","y_label"=>"greed"}
+    @plot = BarChart.new  @categories,@values,@params
+end
+
+describe "#new" do
+    it "takes three parameters and returns a BarChart object" do
+        @plot.should be_an_instance_of BarChart
+    end
+end
+
+describe "#save" do
+    it "save plot whit name sample.jpg(deafult)" do
+	@plot.save
+        (File.exist? "sample.jpg").should==true
+        FileUtils.rm "sample.jpg" 
+    end
+end
+end

data/spec/bland_altman_spec.rb

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+require File.expand_path(File.dirname(__FILE__) + '/spec_helper')
+
+describe "BlandAltman" do
+
+before :each do
+    @x = [1.0,2.0,3.0]
+    @x2 = [1.0,2.0,3.0]
+    @params = {"title" => "Bland"}
+    @plot = BlandAltman.new  @x,@x2,@params
+end
+
+describe "#new" do
+    it "takes three parameters and returns a BlandAltman object" do
+        @plot.should be_an_instance_of BlandAltman
+    end
+end
+
+describe "#save" do
+    it "save plot whit name sample.jpg(deafult)" do
+        @plot.save
+        (File.exist? "sample.jpg").should==true
+        FileUtils.rm "sample.jpg"
+    end
+end
+end
+

data/spec/box_plot_spec.rb

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+require File.expand_path(File.dirname(__FILE__) + '/spec_helper')
+
+describe "BoxPlot" do
+
+before :each do
+    @x = [1.0,2.0,3.0]
+    @params = {"title" => "Box Plot"}
+    @plot = BoxPlot.new  @x,@params
+end
+
+describe "#new" do
+    it "takes two parameters and returns a BoxPlot object" do
+        @plot.should be_an_instance_of BoxPlot
+    end
+end
+
+describe "#save" do
+    it "save plot whit name sample.jpg(deafult)" do
+        @plot.save
+        (File.exist? "sample.jpg").should==true
+        FileUtils.rm "sample.jpg"
+    end
+end
+end
+

data/spec/function_plot_spec.rb

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+require File.expand_path(File.dirname(__FILE__) + '/spec_helper')
+
+describe "FunctionPlot" do
+
+before :each do
+    @function = "(defn cubic [x] (+ (* x x x) (* 2 x x) (* 2 x) 3))"
+    @min_x = 0 
+    @max_x=100   
+    @params = {"title" => "Function"}
+    @plot = FunctionPlot.new  @function,@min_x,@max_x,@params
+end
+
+describe "#new" do
+    it "takes four parameters and returns a FunctionPlot object" do
+        @plot.should be_an_instance_of FunctionPlot
+    end
+end
+
+describe "#save" do
+    it "save plot whit name sample.jpg(deafult)" do
+        @plot.save
+        (File.exist? "sample.jpg").should==true
+        FileUtils.rm "sample.jpg"
+    end
+end
+end
+

data/spec/histogram_spec.rb

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+require File.expand_path(File.dirname(__FILE__) + '/spec_helper')
+
+describe "Histogram" do
+
+before :each do
+    @values = [1.0,2.0,3.0]
+    @params = {"title" => "Popolation"}
+    @plot = Histogram.new  @values,@params
+end
+
+describe "#new" do
+    it "takes three parameters and returns a BarChart object" do
+        @plot.should be_an_instance_of Histogram
+    end
+end
+
+describe "#save" do
+    it "save plot whit name sample.jpg(deafult)" do
+	@plot.save
+        (File.exist? "sample.jpg").should==true
+        FileUtils.rm "sample.jpg" 
+    end
+end
+end

data/spec/line_chart_spec.rb

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+require File.expand_path(File.dirname(__FILE__) + '/spec_helper')
+
+describe "LineChart" do
+
+before :each do
+    @categories = ["uman","elf","dwarfs"]
+    @values = [1.0,2.0,3.0]
+    @params = {"title" => "Popolation of middle heart","x_label"=>"Popolation","y_label"=>"greed"}
+    @plot = LineChart.new  @categories,@values,@params
+end
+
+describe "#new" do
+    it "takes three parameters and returns a BarChart object" do
+        @plot.should be_an_instance_of LineChart
+    end
+end
+
+describe "#save" do
+    it "save plot whit name sample.jpg(deafult)" do
+	@plot.save
+        (File.exist? "sample.jpg").should==true
+        FileUtils.rm "sample.jpg" 
+    end
+end
+end

data/spec/pie_chart_spec.rb

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+require File.expand_path(File.dirname(__FILE__) + '/spec_helper')
+
+describe "PieChart" do
+
+before :each do
+    @categories = ["uman","elf","dwarfs"]
+    @values = [1.0,2.0,3.0]
+    @params = {"title" => "Popolation of middle heart"}
+    @plot = PieChart.new  @categories,@values,@params
+end
+
+describe "#new" do
+    it "takes three parameters and returns a BarChart object" do
+        @plot.should be_an_instance_of PieChart
+    end
+end
+
+describe "#save" do
+    it "save plot whit name sample.jpg(deafult)" do
+	@plot.save
+        (File.exist? "sample.jpg").should==true
+        FileUtils.rm "sample.jpg" 
+    end
+end
+end

data/spec/qq_plot_spec.rb

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+require File.expand_path(File.dirname(__FILE__) + '/spec_helper')
+
+describe "QqPlot" do
+
+before :each do
+    @values = [1.0,2.0,3.0]
+    @params = {"title" => "A qq plot"}
+    @plot = QqPlot.new  @values,@params
+end
+
+describe "#new" do
+    it "takes three parameters and returns a QqPlot object" do
+        @plot.should be_an_instance_of QqPlot
+    end
+end
+
+describe "#save" do
+    it "save plot whit name sample.jpg(deafult)" do
+	@plot.save
+        (File.exist? "sample.jpg").should==true
+        FileUtils.rm "sample.jpg" 
+    end
+end
+end

data/spec/scatter_plot_spec.rb

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+require File.expand_path(File.dirname(__FILE__) + '/spec_helper')
+
+describe "ScatterPlot" do
+
+before :each do
+    @x = [1.0,2.0,3.0]
+    @y = [1.0,2.0,3.0]
+    @params = {"title" => "Scatter Plot"}
+    @plot = ScatterPlot.new  @x,@y,@params
+end
+
+describe "#new" do
+    it "takes three parameters and returns a ScatterPlot object" do
+        @plot.should be_an_instance_of ScatterPlot
+    end
+end
+
+describe "#save" do
+    it "save plot whit name sample.jpg(deafult)" do
+        @plot.save
+        (File.exist? "sample.jpg").should==true
+        FileUtils.rm "sample.jpg"
+    end
+end
+end
+

data/spec/spec_helper.rb

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+$LOAD_PATH.unshift(File.join(File.dirname(__FILE__), '..', 'lib'))
+$LOAD_PATH.unshift(File.dirname(__FILE__))
+require 'rspec'
+require 'bio-incanter'
+require 'fileutils'
+
+# Requires supporting files with custom matchers and macros, etc,
+# in ./support/ and its subdirectories.
+Dir["#{File.dirname(__FILE__)}/support/**/*.rb"].each {|f| require f}
+
+RSpec.configure do |config|
+  
+end

data/spec/time_chart_spec.rb

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+require File.expand_path(File.dirname(__FILE__) + '/spec_helper')
+
+describe "TimeChart" do
+
+before :each do
+    @time = [1000,2000,3000]
+    @y = [1.0,2.0,3.0]
+    @params = {"title" => "TimePlot"}
+    @plot = TimeChart.new  @time,@y,@params
+end
+
+describe "#new" do
+    it "takes three parameters and returns a TimeChart object" do
+        @plot.should be_an_instance_of TimeChart
+    end
+end
+
+describe "#save" do
+    it "save plot whit name sample.jpg(deafult)" do
+        @plot.save
+        (File.exist? "sample.jpg").should==true
+        FileUtils.rm "sample.jpg"
+    end
+end
+end
+

data/spec/trace_plot_spec.rb

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+require File.expand_path(File.dirname(__FILE__) + '/spec_helper')
+
+describe "TracePlot" do
+
+before :each do
+    @values = [1.0,2.0,3.0]
+    @params = {"title" => "Trace Plot"}
+    @plot = TracePlot.new  @values,@params
+end
+
+describe "#new" do
+    it "takes two parameters and returns a TracePlot object" do
+        @plot.should be_an_instance_of TracePlot
+    end
+end
+
+describe "#save" do
+    it "save plot whit name sample.jpg(deafult)" do
+	@plot.save
+        (File.exist? "sample.jpg").should==true
+        FileUtils.rm "sample.jpg" 
+    end
+end
+end

data/spec/xy_plot_spec.rb

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+require File.expand_path(File.dirname(__FILE__) + '/spec_helper')
+
+describe "XyPlot" do
+
+before :each do
+    @x = [1.0,2.0,3.0]
+    @y=[1.0,2.0,3.0] 
+    @params = {}
+    @plot = XyPlot.new  @x,@y,@params
+end
+
+describe "#new" do
+    it "takes three parameters and returns a XyPlot object" do
+        @plot.should be_an_instance_of XyPlot
+    end
+end
+
+describe "#save" do
+    it "save plot whit name sample.jpg(deafult)" do
+	@plot.save
+        (File.exist? "sample.jpg").should==true
+        FileUtils.rm "sample.jpg" 
+    end
+end
+end

metadata

@@ -0,0 +1,196 @@
+--- !ruby/object:Gem::Specification 
+name: bio-incanter
+version: !ruby/object:Gem::Version 
+  prerelease: 
+  version: 0.1.0
+platform: ruby
+authors: 
+  - Matteo Picciolini
+autorequire: 
+bindir: bin
+cert_chain: []
+
+date: 2012-08-06 00:00:00 Z
+dependencies: 
+  - !ruby/object:Gem::Dependency 
+    name: jruby-openssl
+    version_requirements: &id001 !ruby/object:Gem::Requirement 
+      none: false
+      requirements: 
+        - - ">="
+          - !ruby/object:Gem::Version 
+            version: "0"
+    requirement: *id001
+    prerelease: false
+    type: :runtime
+  - !ruby/object:Gem::Dependency 
+    name: rspec
+    version_requirements: &id002 !ruby/object:Gem::Requirement 
+      none: false
+      requirements: 
+        - - ~>
+          - !ruby/object:Gem::Version 
+            version: 2.8.0
+    requirement: *id002
+    prerelease: false
+    type: :development
+  - !ruby/object:Gem::Dependency 
+    name: rdoc
+    version_requirements: &id003 !ruby/object:Gem::Requirement 
+      none: false
+      requirements: 
+        - - ~>
+          - !ruby/object:Gem::Version 
+            version: "3.12"
+    requirement: *id003
+    prerelease: false
+    type: :development
+  - !ruby/object:Gem::Dependency 
+    name: bundler
+    version_requirements: &id004 !ruby/object:Gem::Requirement 
+      none: false
+      requirements: 
+        - - <
+          - !ruby/object:Gem::Version 
+            version: 1.1.5
+    requirement: *id004
+    prerelease: false
+    type: :development
+  - !ruby/object:Gem::Dependency 
+    name: jeweler
+    version_requirements: &id005 !ruby/object:Gem::Requirement 
+      none: false
+      requirements: 
+        - - ~>
+          - !ruby/object:Gem::Version 
+            version: 1.8.4
+    requirement: *id005
+    prerelease: false
+    type: :development
+description: A Jruby wrapper to Incanter lib
+email: matteo.picciolini@gmail.com
+executables: []
+
+extensions: []
+
+extra_rdoc_files: 
+  - LICENSE.txt
+  - README.rdoc
+files: 
+  - Gemfile
+  - Gemfile.lock
+  - LICENSE.txt
+  - README.rdoc
+  - Rakefile
+  - VERSION
+  - bio-incanter.gemspec
+  - doc/AreaChart.html
+  - doc/BarChart.html
+  - doc/BlandAltman.html
+  - doc/BoxPlot.html
+  - doc/FunctionPlot.html
+  - doc/HeatMap.html
+  - doc/Histogram.html
+  - doc/LICENSE_txt.html
+  - doc/LineChart.html
+  - doc/Object.html
+  - doc/PieChart.html
+  - doc/README_rdoc.html
+  - doc/ScatterPlot.html
+  - doc/TimeChart.html
+  - doc/TracePlot.html
+  - doc/XyPlot.html
+  - doc/created.rid
+  - doc/images/add.png
+  - doc/images/brick.png
+  - doc/images/brick_link.png
+  - doc/images/bug.png
+  - doc/images/bullet_black.png
+  - doc/images/bullet_toggle_minus.png
+  - doc/images/bullet_toggle_plus.png
+  - doc/images/date.png
+  - doc/images/delete.png
+  - doc/images/find.png
+  - doc/images/loadingAnimation.gif
+  - doc/images/macFFBgHack.png
+  - doc/images/package.png
+  - doc/images/page_green.png
+  - doc/images/page_white_text.png
+  - doc/images/page_white_width.png
+  - doc/images/plugin.png
+  - doc/images/ruby.png
+  - doc/images/tag_blue.png
+  - doc/images/tag_green.png
+  - doc/images/transparent.png
+  - doc/images/wrench.png
+  - doc/images/wrench_orange.png
+  - doc/images/zoom.png
+  - doc/index.html
+  - doc/js/darkfish.js
+  - doc/js/jquery.js
+  - doc/js/navigation.js
+  - doc/js/search.js
+  - doc/js/search_index.js
+  - doc/js/searcher.js
+  - doc/rdoc.css
+  - doc/table_of_contents.html
+  - lib/area_chart/area_chart.rb
+  - lib/bar_chart/bar_chart.rb
+  - lib/bio-incanter.rb
+  - lib/bland_altman/bland_altman.rb
+  - lib/box_plot/box_plot.rb
+  - lib/function_plot/function_plot.rb
+  - lib/histogram/histogram.rb
+  - lib/java/clocomics-1.0.0-standalone.jar
+  - lib/line_chart/line_chart.rb
+  - lib/pie_chart/pie_chart.rb
+  - lib/qq_plot/qq_plot.rb
+  - lib/scatter_plot/scatter_plot.rb
+  - lib/time_chart/time_chart.rb
+  - lib/trace_plot/trace_plot.rb
+  - lib/xy_plot/xy_plot.rb
+  - spec/bar_chart_spec.rb
+  - spec/bland_altman_spec.rb
+  - spec/box_plot_spec.rb
+  - spec/function_plot_spec.rb
+  - spec/histogram_spec.rb
+  - spec/line_chart_spec.rb
+  - spec/pie_chart_spec.rb
+  - spec/qq_plot_spec.rb
+  - spec/scatter_plot_spec.rb
+  - spec/spec_helper.rb
+  - spec/time_chart_spec.rb
+  - spec/trace_plot_spec.rb
+  - spec/xy_plot_spec.rb
+homepage: http://github.com/cerbero/bio-incanter
+licenses: 
+  - MIT
+post_install_message: 
+rdoc_options: []
+
+require_paths: 
+  - lib
+required_ruby_version: !ruby/object:Gem::Requirement 
+  none: false
+  requirements: 
+    - - ">="
+      - !ruby/object:Gem::Version 
+        hash: 2
+        segments: 
+          - 0
+        version: "0"
+required_rubygems_version: !ruby/object:Gem::Requirement 
+  none: false
+  requirements: 
+    - - ">="
+      - !ruby/object:Gem::Version 
+        version: "0"
+requirements: []
+
+rubyforge_project: 
+rubygems_version: 1.8.15
+signing_key: 
+specification_version: 3
+summary: Build Graph with Jruby
+test_files: []
+