abstractor 1.0.8

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Files changed (346) hide show
  1. checksums.yaml +15 -0
  2. data/MIT-LICENSE +20 -0
  3. data/README.md +14 -0
  4. data/Rakefile +33 -0
  5. data/app/assets/images/abstractor/add.png +0 -0
  6. data/app/assets/images/abstractor/ajax-loader.gif +0 -0
  7. data/app/assets/images/abstractor/bar.gif +0 -0
  8. data/app/assets/images/abstractor/bti_logo.jpg +0 -0
  9. data/app/assets/images/abstractor/bullet_arrow_down.png +0 -0
  10. data/app/assets/images/abstractor/bullet_arrow_up.png +0 -0
  11. data/app/assets/images/abstractor/cog.png +0 -0
  12. data/app/assets/images/abstractor/delete.png +0 -0
  13. data/app/assets/images/abstractor/edit.png +0 -0
  14. data/app/assets/images/abstractor/excel.png +0 -0
  15. data/app/assets/images/abstractor/favicon.ico +0 -0
  16. data/app/assets/images/abstractor/greencheck.gif +0 -0
  17. data/app/assets/images/abstractor/loading.gif +0 -0
  18. data/app/assets/images/abstractor/nu_logo.jpg +0 -0
  19. data/app/assets/images/abstractor/nubic_logo.png +0 -0
  20. data/app/assets/images/abstractor/page.png +0 -0
  21. data/app/assets/images/abstractor/rails.png +0 -0
  22. data/app/assets/images/abstractor/robert_h_lurie.jpg +0 -0
  23. data/app/assets/images/abstractor/show.png +0 -0
  24. data/app/assets/images/abstractor/switch_minus.gif +0 -0
  25. data/app/assets/images/abstractor/switch_plus.gif +0 -0
  26. data/app/assets/javascripts/abstractor/abstractor.js +89 -0
  27. data/app/assets/javascripts/abstractor/application.js +21 -0
  28. data/app/assets/javascripts/abstractor/combobox.js +301 -0
  29. data/app/assets/javascripts/abstractor/jquery/jquery.form.js +1074 -0
  30. data/app/assets/javascripts/abstractor/nested_attributes.js +69 -0
  31. data/app/assets/stylesheets/abstractor/abstractor_abstractions.css +312 -0
  32. data/app/assets/stylesheets/abstractor/application.css +21 -0
  33. data/app/assets/stylesheets/abstractor/jquery.ui.override.css.scss +73 -0
  34. data/app/controllers/abstractor/abstractor_abstraction_groups_controller.rb +5 -0
  35. data/app/controllers/abstractor/abstractor_abstractions_controller.rb +5 -0
  36. data/app/controllers/abstractor/abstractor_suggestions_controller.rb +5 -0
  37. data/app/controllers/abstractor/application_controller.rb +2 -0
  38. data/app/helpers/abstractor/application_helper.rb +4 -0
  39. data/app/models/abstractor/abstractor_abstraction.rb +6 -0
  40. data/app/models/abstractor/abstractor_abstraction_group.rb +6 -0
  41. data/app/models/abstractor/abstractor_abstraction_group_member.rb +6 -0
  42. data/app/models/abstractor/abstractor_abstraction_schema.rb +6 -0
  43. data/app/models/abstractor/abstractor_abstraction_schema_object_value.rb +6 -0
  44. data/app/models/abstractor/abstractor_abstraction_schema_predicate_variant.rb +6 -0
  45. data/app/models/abstractor/abstractor_abstraction_schema_relation.rb +6 -0
  46. data/app/models/abstractor/abstractor_abstraction_source.rb +6 -0
  47. data/app/models/abstractor/abstractor_object_type.rb +6 -0
  48. data/app/models/abstractor/abstractor_object_value.rb +6 -0
  49. data/app/models/abstractor/abstractor_object_value_variant.rb +6 -0
  50. data/app/models/abstractor/abstractor_relation_type.rb +6 -0
  51. data/app/models/abstractor/abstractor_rule_type.rb +6 -0
  52. data/app/models/abstractor/abstractor_subject.rb +6 -0
  53. data/app/models/abstractor/abstractor_subject_group.rb +6 -0
  54. data/app/models/abstractor/abstractor_subject_group_member.rb +6 -0
  55. data/app/models/abstractor/abstractor_subject_relation.rb +6 -0
  56. data/app/models/abstractor/abstractor_suggestion.rb +6 -0
  57. data/app/models/abstractor/abstractor_suggestion_object_value.rb +6 -0
  58. data/app/models/abstractor/abstractor_suggestion_source.rb +6 -0
  59. data/app/models/abstractor/abstractor_suggestion_status.rb +6 -0
  60. data/app/views/abstractor/abstractor_abstraction_groups/_form.html.haml +10 -0
  61. data/app/views/abstractor/abstractor_abstraction_groups/edit.html.haml +1 -0
  62. data/app/views/abstractor/abstractor_abstractions/_fields.html.haml +63 -0
  63. data/app/views/abstractor/abstractor_abstractions/_list.html.haml +45 -0
  64. data/app/views/abstractor/abstractor_abstractions/edit.html.haml +53 -0
  65. data/app/views/abstractor/abstractor_abstractions/show.html.haml +1 -0
  66. data/app/views/abstractor/shared/_error_messages.html.haml +5 -0
  67. data/config/cucumber.yml +8 -0
  68. data/config/routes.rb +7 -0
  69. data/db/migrate/20131227205140_create_abstractor_object_types.rb +10 -0
  70. data/db/migrate/20131227205219_create_abstractor_object_values.rb +10 -0
  71. data/db/migrate/20131227205256_create_abstractor_object_value_variants.rb +11 -0
  72. data/db/migrate/20131227205320_create_abstractor_relation_types.rb +10 -0
  73. data/db/migrate/20131227205354_create_abstractor_rule_types.rb +11 -0
  74. data/db/migrate/20131227205432_create_abstractor_abstraction_schemas.rb +13 -0
  75. data/db/migrate/20131227205456_create_abstractor_abstraction_schema_object_values.rb +10 -0
  76. data/db/migrate/20131227205529_create_abstractor_abstraction_schema_predicate_variants.rb +11 -0
  77. data/db/migrate/20131227205610_create_abstractor_abstraction_schema_relations.rb +11 -0
  78. data/db/migrate/20131227205652_create_abstractor_subjects.rb +12 -0
  79. data/db/migrate/20131227205732_create_abstractor_subject_relations.rb +11 -0
  80. data/db/migrate/20131227205831_create_abstractor_abstraction_sources.rb +11 -0
  81. data/db/migrate/20131227210211_create_abstractor_subject_groups.rb +10 -0
  82. data/db/migrate/20131227210244_create_abstractor_subject_group_members.rb +11 -0
  83. data/db/migrate/20131227210350_create_abstractor_abstraction_groups.rb +12 -0
  84. data/db/migrate/20131227210353_create_abstractor_abstraction_group_members.rb +11 -0
  85. data/db/migrate/20131227211050_create_abstractor_suggestion_statuses.rb +10 -0
  86. data/db/migrate/20131227211303_create_abstractor_abstractions.rb +15 -0
  87. data/db/migrate/20131227213427_create_abstractor_suggestions.rb +14 -0
  88. data/db/migrate/20131228041944_create_abstractor_suggestion_object_values.rb +11 -0
  89. data/db/migrate/20131228041945_create_abstractor_suggestion_sources.rb +16 -0
  90. data/db/seeds.rb +0 -0
  91. data/lib/abstractor.rb +8 -0
  92. data/lib/abstractor/abstractable.rb +190 -0
  93. data/lib/abstractor/core_ext/string.rb +99 -0
  94. data/lib/abstractor/engine.rb +14 -0
  95. data/lib/abstractor/methods/controllers/abstractor_abstraction_groups_controller.rb +37 -0
  96. data/lib/abstractor/methods/controllers/abstractor_abstractions_controller.rb +42 -0
  97. data/lib/abstractor/methods/controllers/abstractor_suggestions_controller.rb +28 -0
  98. data/lib/abstractor/methods/models/abstractor_abstraction.rb +65 -0
  99. data/lib/abstractor/methods/models/abstractor_abstraction_group.rb +37 -0
  100. data/lib/abstractor/methods/models/abstractor_abstraction_group_member.rb +17 -0
  101. data/lib/abstractor/methods/models/abstractor_abstraction_schema.rb +27 -0
  102. data/lib/abstractor/methods/models/abstractor_abstraction_schema_object_value.rb +17 -0
  103. data/lib/abstractor/methods/models/abstractor_abstraction_schema_predicate_variant.rb +16 -0
  104. data/lib/abstractor/methods/models/abstractor_abstraction_schema_relation.rb +18 -0
  105. data/lib/abstractor/methods/models/abstractor_abstraction_source.rb +29 -0
  106. data/lib/abstractor/methods/models/abstractor_object_type.rb +16 -0
  107. data/lib/abstractor/methods/models/abstractor_object_value.rb +24 -0
  108. data/lib/abstractor/methods/models/abstractor_object_value_variant.rb +16 -0
  109. data/lib/abstractor/methods/models/abstractor_relation_type.rb +16 -0
  110. data/lib/abstractor/methods/models/abstractor_rule_type.rb +17 -0
  111. data/lib/abstractor/methods/models/abstractor_subject.rb +258 -0
  112. data/lib/abstractor/methods/models/abstractor_subject_group.rb +19 -0
  113. data/lib/abstractor/methods/models/abstractor_subject_group_member.rb +17 -0
  114. data/lib/abstractor/methods/models/abstractor_subject_relation.rb +18 -0
  115. data/lib/abstractor/methods/models/abstractor_suggestion.rb +88 -0
  116. data/lib/abstractor/methods/models/abstractor_suggestion_object_value.rb +17 -0
  117. data/lib/abstractor/methods/models/abstractor_suggestion_source.rb +17 -0
  118. data/lib/abstractor/methods/models/abstractor_suggestion_status.rb +29 -0
  119. data/lib/abstractor/methods/models/soft_delete.rb +35 -0
  120. data/lib/abstractor/negation_detection.rb +43 -0
  121. data/lib/abstractor/parser.rb +76 -0
  122. data/lib/abstractor/setup.rb +24 -0
  123. data/lib/abstractor/user_interface.rb +40 -0
  124. data/lib/abstractor/utility.rb +8 -0
  125. data/lib/abstractor/version.rb +3 -0
  126. data/lib/generators/abstractor/install/install_generator.rb +118 -0
  127. data/lib/generators/abstractor/install/templates/controllers/abstractor_abstraction_groups_controller.rb +16 -0
  128. data/lib/generators/abstractor/install/templates/controllers/abstractor_abstractions_controller.rb +24 -0
  129. data/lib/generators/abstractor/install/templates/controllers/abstractor_suggestions_controller.rb +12 -0
  130. data/lib/generators/abstractor/install/templates/dictionaries.yml +235 -0
  131. data/lib/generators/abstractor/install/templates/helpers/abstractions_helper.rb +9 -0
  132. data/lib/generators/abstractor/install/templates/models/abstractor_abstraction.rb +9 -0
  133. data/lib/generators/abstractor/install/templates/models/abstractor_abstraction_group.rb +9 -0
  134. data/lib/generators/abstractor/install/templates/models/abstractor_abstraction_group_member.rb +9 -0
  135. data/lib/generators/abstractor/install/templates/models/abstractor_abstraction_schema.rb +9 -0
  136. data/lib/generators/abstractor/install/templates/models/abstractor_abstraction_schema_object_value.rb +9 -0
  137. data/lib/generators/abstractor/install/templates/models/abstractor_abstraction_schema_predicate_variant.rb +9 -0
  138. data/lib/generators/abstractor/install/templates/models/abstractor_abstraction_schema_relation.rb +9 -0
  139. data/lib/generators/abstractor/install/templates/models/abstractor_abstraction_source.rb +9 -0
  140. data/lib/generators/abstractor/install/templates/models/abstractor_object_type.rb +9 -0
  141. data/lib/generators/abstractor/install/templates/models/abstractor_object_value.rb +9 -0
  142. data/lib/generators/abstractor/install/templates/models/abstractor_object_value_variant.rb +9 -0
  143. data/lib/generators/abstractor/install/templates/models/abstractor_relation_type.rb +9 -0
  144. data/lib/generators/abstractor/install/templates/models/abstractor_rule_type.rb +9 -0
  145. data/lib/generators/abstractor/install/templates/models/abstractor_subject.rb +9 -0
  146. data/lib/generators/abstractor/install/templates/models/abstractor_subject_group.rb +9 -0
  147. data/lib/generators/abstractor/install/templates/models/abstractor_subject_group_member.rb +9 -0
  148. data/lib/generators/abstractor/install/templates/models/abstractor_subject_relation.rb +9 -0
  149. data/lib/generators/abstractor/install/templates/models/abstractor_suggestion.rb +9 -0
  150. data/lib/generators/abstractor/install/templates/models/abstractor_suggestion_object_value.rb +9 -0
  151. data/lib/generators/abstractor/install/templates/models/abstractor_suggestion_source.rb +9 -0
  152. data/lib/generators/abstractor/install/templates/models/abstractor_suggestion_status.rb +9 -0
  153. data/lib/lingscope/build.xml +74 -0
  154. data/lib/lingscope/build/built-jar.properties +4 -0
  155. data/lib/lingscope/build/classes/lingscope/algorithms/AbnerTokenizer.class +0 -0
  156. data/lib/lingscope/build/classes/lingscope/algorithms/AnnotationComparer.class +0 -0
  157. data/lib/lingscope/build/classes/lingscope/algorithms/Annotator.class +0 -0
  158. data/lib/lingscope/build/classes/lingscope/algorithms/BaselineAnnotator.class +0 -0
  159. data/lib/lingscope/build/classes/lingscope/algorithms/BaselineCueAnnotator.class +0 -0
  160. data/lib/lingscope/build/classes/lingscope/algorithms/BaselineScopeAnnotator.class +0 -0
  161. data/lib/lingscope/build/classes/lingscope/algorithms/CrfAnnotator.class +0 -0
  162. data/lib/lingscope/build/classes/lingscope/algorithms/NegexAnnotator.class +0 -0
  163. data/lib/lingscope/build/classes/lingscope/algorithms/NegexCueAnnotator.class +0 -0
  164. data/lib/lingscope/build/classes/lingscope/algorithms/NegexScopeAnnotator.class +0 -0
  165. data/lib/lingscope/build/classes/lingscope/algorithms/PosTagger.class +0 -0
  166. data/lib/lingscope/build/classes/lingscope/algorithms/negex/GenNegEx.class +0 -0
  167. data/lib/lingscope/build/classes/lingscope/algorithms/negex/Sorter.class +0 -0
  168. data/lib/lingscope/build/classes/lingscope/drivers/AnnotatedFilesMerger.class +0 -0
  169. data/lib/lingscope/build/classes/lingscope/drivers/AnnotationComparerDriver.class +0 -0
  170. data/lib/lingscope/build/classes/lingscope/drivers/BaselineDriver.class +0 -0
  171. data/lib/lingscope/build/classes/lingscope/drivers/CrfDriver.class +0 -0
  172. data/lib/lingscope/build/classes/lingscope/drivers/CueAndPosFilesMerger.class +0 -0
  173. data/lib/lingscope/build/classes/lingscope/drivers/ModelTrainer.class +0 -0
  174. data/lib/lingscope/build/classes/lingscope/drivers/NegexDriver.class +0 -0
  175. data/lib/lingscope/build/classes/lingscope/drivers/PosTaggerDriver.class +0 -0
  176. data/lib/lingscope/build/classes/lingscope/drivers/SentencePosTagger.class +0 -0
  177. data/lib/lingscope/build/classes/lingscope/drivers/SentenceTagger.class +0 -0
  178. data/lib/lingscope/build/classes/lingscope/io/AnnotatedSentencesIO.class +0 -0
  179. data/lib/lingscope/build/classes/lingscope/structures/AnnotatedSentence.class +0 -0
  180. data/lib/lingscope/dist/README.TXT +32 -0
  181. data/lib/lingscope/dist/javadoc/allclasses-frame.html +80 -0
  182. data/lib/lingscope/dist/javadoc/allclasses-noframe.html +80 -0
  183. data/lib/lingscope/dist/javadoc/constant-values.html +199 -0
  184. data/lib/lingscope/dist/javadoc/deprecated-list.html +147 -0
  185. data/lib/lingscope/dist/javadoc/help-doc.html +224 -0
  186. data/lib/lingscope/dist/javadoc/index-files/index-1.html +188 -0
  187. data/lib/lingscope/dist/javadoc/index-files/index-10.html +149 -0
  188. data/lib/lingscope/dist/javadoc/index-files/index-11.html +158 -0
  189. data/lib/lingscope/dist/javadoc/index-files/index-12.html +157 -0
  190. data/lib/lingscope/dist/javadoc/index-files/index-13.html +177 -0
  191. data/lib/lingscope/dist/javadoc/index-files/index-14.html +155 -0
  192. data/lib/lingscope/dist/javadoc/index-files/index-15.html +152 -0
  193. data/lib/lingscope/dist/javadoc/index-files/index-16.html +146 -0
  194. data/lib/lingscope/dist/javadoc/index-files/index-2.html +158 -0
  195. data/lib/lingscope/dist/javadoc/index-files/index-3.html +165 -0
  196. data/lib/lingscope/dist/javadoc/index-files/index-4.html +146 -0
  197. data/lib/lingscope/dist/javadoc/index-files/index-5.html +219 -0
  198. data/lib/lingscope/dist/javadoc/index-files/index-6.html +149 -0
  199. data/lib/lingscope/dist/javadoc/index-files/index-7.html +155 -0
  200. data/lib/lingscope/dist/javadoc/index-files/index-8.html +185 -0
  201. data/lib/lingscope/dist/javadoc/index-files/index-9.html +164 -0
  202. data/lib/lingscope/dist/javadoc/index.html +74 -0
  203. data/lib/lingscope/dist/javadoc/lingscope/algorithms/AbnerTokenizer.html +280 -0
  204. data/lib/lingscope/dist/javadoc/lingscope/algorithms/AnnotationComparer.html +526 -0
  205. data/lib/lingscope/dist/javadoc/lingscope/algorithms/Annotator.html +401 -0
  206. data/lib/lingscope/dist/javadoc/lingscope/algorithms/BaselineAnnotator.html +375 -0
  207. data/lib/lingscope/dist/javadoc/lingscope/algorithms/BaselineCueAnnotator.html +309 -0
  208. data/lib/lingscope/dist/javadoc/lingscope/algorithms/BaselineScopeAnnotator.html +340 -0
  209. data/lib/lingscope/dist/javadoc/lingscope/algorithms/CrfAnnotator.html +340 -0
  210. data/lib/lingscope/dist/javadoc/lingscope/algorithms/NegexAnnotator.html +364 -0
  211. data/lib/lingscope/dist/javadoc/lingscope/algorithms/NegexCueAnnotator.html +309 -0
  212. data/lib/lingscope/dist/javadoc/lingscope/algorithms/NegexScopeAnnotator.html +309 -0
  213. data/lib/lingscope/dist/javadoc/lingscope/algorithms/PosTagger.html +268 -0
  214. data/lib/lingscope/dist/javadoc/lingscope/algorithms/class-use/AbnerTokenizer.html +145 -0
  215. data/lib/lingscope/dist/javadoc/lingscope/algorithms/class-use/AnnotationComparer.html +145 -0
  216. data/lib/lingscope/dist/javadoc/lingscope/algorithms/class-use/Annotator.html +299 -0
  217. data/lib/lingscope/dist/javadoc/lingscope/algorithms/class-use/BaselineAnnotator.html +189 -0
  218. data/lib/lingscope/dist/javadoc/lingscope/algorithms/class-use/BaselineCueAnnotator.html +145 -0
  219. data/lib/lingscope/dist/javadoc/lingscope/algorithms/class-use/BaselineScopeAnnotator.html +145 -0
  220. data/lib/lingscope/dist/javadoc/lingscope/algorithms/class-use/CrfAnnotator.html +145 -0
  221. data/lib/lingscope/dist/javadoc/lingscope/algorithms/class-use/NegexAnnotator.html +189 -0
  222. data/lib/lingscope/dist/javadoc/lingscope/algorithms/class-use/NegexCueAnnotator.html +145 -0
  223. data/lib/lingscope/dist/javadoc/lingscope/algorithms/class-use/NegexScopeAnnotator.html +145 -0
  224. data/lib/lingscope/dist/javadoc/lingscope/algorithms/class-use/PosTagger.html +145 -0
  225. data/lib/lingscope/dist/javadoc/lingscope/algorithms/negex/GenNegEx.html +369 -0
  226. data/lib/lingscope/dist/javadoc/lingscope/algorithms/negex/Sorter.html +253 -0
  227. data/lib/lingscope/dist/javadoc/lingscope/algorithms/negex/class-use/GenNegEx.html +181 -0
  228. data/lib/lingscope/dist/javadoc/lingscope/algorithms/negex/class-use/Sorter.html +145 -0
  229. data/lib/lingscope/dist/javadoc/lingscope/algorithms/negex/package-frame.html +35 -0
  230. data/lib/lingscope/dist/javadoc/lingscope/algorithms/negex/package-summary.html +165 -0
  231. data/lib/lingscope/dist/javadoc/lingscope/algorithms/negex/package-tree.html +154 -0
  232. data/lib/lingscope/dist/javadoc/lingscope/algorithms/negex/package-use.html +174 -0
  233. data/lib/lingscope/dist/javadoc/lingscope/algorithms/package-frame.html +53 -0
  234. data/lib/lingscope/dist/javadoc/lingscope/algorithms/package-summary.html +198 -0
  235. data/lib/lingscope/dist/javadoc/lingscope/algorithms/package-tree.html +160 -0
  236. data/lib/lingscope/dist/javadoc/lingscope/algorithms/package-use.html +202 -0
  237. data/lib/lingscope/dist/javadoc/lingscope/drivers/AnnotatedFilesMerger.html +284 -0
  238. data/lib/lingscope/dist/javadoc/lingscope/drivers/AnnotationComparerDriver.html +258 -0
  239. data/lib/lingscope/dist/javadoc/lingscope/drivers/BaselineDriver.html +260 -0
  240. data/lib/lingscope/dist/javadoc/lingscope/drivers/CrfDriver.html +262 -0
  241. data/lib/lingscope/dist/javadoc/lingscope/drivers/CueAndPosFilesMerger.html +310 -0
  242. data/lib/lingscope/dist/javadoc/lingscope/drivers/ModelTrainer.html +281 -0
  243. data/lib/lingscope/dist/javadoc/lingscope/drivers/NegexDriver.html +262 -0
  244. data/lib/lingscope/dist/javadoc/lingscope/drivers/PosTaggerDriver.html +289 -0
  245. data/lib/lingscope/dist/javadoc/lingscope/drivers/SentencePosTagger.html +313 -0
  246. data/lib/lingscope/dist/javadoc/lingscope/drivers/SentenceTagger.html +512 -0
  247. data/lib/lingscope/dist/javadoc/lingscope/drivers/class-use/AnnotatedFilesMerger.html +145 -0
  248. data/lib/lingscope/dist/javadoc/lingscope/drivers/class-use/AnnotationComparerDriver.html +145 -0
  249. data/lib/lingscope/dist/javadoc/lingscope/drivers/class-use/BaselineDriver.html +145 -0
  250. data/lib/lingscope/dist/javadoc/lingscope/drivers/class-use/CrfDriver.html +145 -0
  251. data/lib/lingscope/dist/javadoc/lingscope/drivers/class-use/CueAndPosFilesMerger.html +145 -0
  252. data/lib/lingscope/dist/javadoc/lingscope/drivers/class-use/ModelTrainer.html +145 -0
  253. data/lib/lingscope/dist/javadoc/lingscope/drivers/class-use/NegexDriver.html +145 -0
  254. data/lib/lingscope/dist/javadoc/lingscope/drivers/class-use/PosTaggerDriver.html +145 -0
  255. data/lib/lingscope/dist/javadoc/lingscope/drivers/class-use/SentencePosTagger.html +145 -0
  256. data/lib/lingscope/dist/javadoc/lingscope/drivers/class-use/SentenceTagger.html +145 -0
  257. data/lib/lingscope/dist/javadoc/lingscope/drivers/package-frame.html +51 -0
  258. data/lib/lingscope/dist/javadoc/lingscope/drivers/package-summary.html +195 -0
  259. data/lib/lingscope/dist/javadoc/lingscope/drivers/package-tree.html +154 -0
  260. data/lib/lingscope/dist/javadoc/lingscope/drivers/package-use.html +145 -0
  261. data/lib/lingscope/dist/javadoc/lingscope/io/AnnotatedSentencesIO.html +285 -0
  262. data/lib/lingscope/dist/javadoc/lingscope/io/class-use/AnnotatedSentencesIO.html +145 -0
  263. data/lib/lingscope/dist/javadoc/lingscope/io/package-frame.html +33 -0
  264. data/lib/lingscope/dist/javadoc/lingscope/io/package-summary.html +158 -0
  265. data/lib/lingscope/dist/javadoc/lingscope/io/package-tree.html +154 -0
  266. data/lib/lingscope/dist/javadoc/lingscope/io/package-use.html +145 -0
  267. data/lib/lingscope/dist/javadoc/lingscope/structures/AnnotatedSentence.html +425 -0
  268. data/lib/lingscope/dist/javadoc/lingscope/structures/class-use/AnnotatedSentence.html +423 -0
  269. data/lib/lingscope/dist/javadoc/lingscope/structures/package-frame.html +33 -0
  270. data/lib/lingscope/dist/javadoc/lingscope/structures/package-summary.html +158 -0
  271. data/lib/lingscope/dist/javadoc/lingscope/structures/package-tree.html +154 -0
  272. data/lib/lingscope/dist/javadoc/lingscope/structures/package-use.html +209 -0
  273. data/lib/lingscope/dist/javadoc/overview-frame.html +51 -0
  274. data/lib/lingscope/dist/javadoc/overview-summary.html +168 -0
  275. data/lib/lingscope/dist/javadoc/overview-tree.html +159 -0
  276. data/lib/lingscope/dist/javadoc/package-list +5 -0
  277. data/lib/lingscope/dist/javadoc/resources/inherit.gif +0 -0
  278. data/lib/lingscope/dist/javadoc/stylesheet.css +29 -0
  279. data/lib/lingscope/dist/lib/abner.jar +0 -0
  280. data/lib/lingscope/dist/lib/commons-lang-2.4.jar +0 -0
  281. data/lib/lingscope/dist/lib/java_utils.jar +0 -0
  282. data/lib/lingscope/dist/lib/sptoolkit.jar +0 -0
  283. data/lib/lingscope/dist/lib/stanford-postagger.jar +0 -0
  284. data/lib/lingscope/dist/lingscope.jar +0 -0
  285. data/lib/lingscope/lingscope.zip +0 -0
  286. data/lib/lingscope/manifest.mf +3 -0
  287. data/lib/lingscope/nbproject/build-impl.xml +1338 -0
  288. data/lib/lingscope/nbproject/genfiles.properties +8 -0
  289. data/lib/lingscope/nbproject/private/config.properties +0 -0
  290. data/lib/lingscope/nbproject/private/private.properties +10 -0
  291. data/lib/lingscope/nbproject/private/private.xml +5 -0
  292. data/lib/lingscope/nbproject/project.properties +85 -0
  293. data/lib/lingscope/nbproject/project.xml +15 -0
  294. data/lib/lingscope/negation_models.zip +0 -0
  295. data/lib/lingscope/negation_models/baseline_cue_all_both.model +49 -0
  296. data/lib/lingscope/negation_models/baseline_cue_all_clinical.model +19 -0
  297. data/lib/lingscope/negation_models/crf_cue_all_both.model +0 -0
  298. data/lib/lingscope/negation_models/crf_cue_all_clinical.model +0 -0
  299. data/lib/lingscope/negation_models/crf_scope_cue_crf_all_both.model +0 -0
  300. data/lib/lingscope/negation_models/crf_scope_cue_crf_all_clinical.model +0 -0
  301. data/lib/lingscope/negation_models/crf_scope_cue_regex_all_both.model +0 -0
  302. data/lib/lingscope/negation_models/crf_scope_cue_regex_all_clinical.model +0 -0
  303. data/lib/lingscope/negation_models/crf_scope_words_all_both.model +0 -0
  304. data/lib/lingscope/negation_models/crf_scope_words_all_clinical.model +0 -0
  305. data/lib/lingscope/negation_models/crf_scope_words_crf_all_both.model +0 -0
  306. data/lib/lingscope/negation_models/crf_scope_words_crf_all_clinical.model +0 -0
  307. data/lib/lingscope/negation_models/crf_scope_words_regex_all_both.model +0 -0
  308. data/lib/lingscope/negation_models/crf_scope_words_regex_all_clinical.model +0 -0
  309. data/lib/lingscope/src/lingscope/algorithms/AbnerTokenizer.java +58 -0
  310. data/lib/lingscope/src/lingscope/algorithms/AnnotationComparer.java +207 -0
  311. data/lib/lingscope/src/lingscope/algorithms/Annotator.java +51 -0
  312. data/lib/lingscope/src/lingscope/algorithms/BaselineAnnotator.java +80 -0
  313. data/lib/lingscope/src/lingscope/algorithms/BaselineCueAnnotator.java +84 -0
  314. data/lib/lingscope/src/lingscope/algorithms/BaselineScopeAnnotator.java +101 -0
  315. data/lib/lingscope/src/lingscope/algorithms/CrfAnnotator.java +45 -0
  316. data/lib/lingscope/src/lingscope/algorithms/NegexAnnotator.java +52 -0
  317. data/lib/lingscope/src/lingscope/algorithms/NegexCueAnnotator.java +26 -0
  318. data/lib/lingscope/src/lingscope/algorithms/NegexScopeAnnotator.java +26 -0
  319. data/lib/lingscope/src/lingscope/algorithms/PosTagger.java +54 -0
  320. data/lib/lingscope/src/lingscope/algorithms/negex/GenNegEx.java +530 -0
  321. data/lib/lingscope/src/lingscope/algorithms/negex/Sorter.java +36 -0
  322. data/lib/lingscope/src/lingscope/drivers/AnnotatedFilesMerger.java +61 -0
  323. data/lib/lingscope/src/lingscope/drivers/AnnotationComparerDriver.java +22 -0
  324. data/lib/lingscope/src/lingscope/drivers/BaselineDriver.java +45 -0
  325. data/lib/lingscope/src/lingscope/drivers/CrfDriver.java +31 -0
  326. data/lib/lingscope/src/lingscope/drivers/CueAndPosFilesMerger.java +86 -0
  327. data/lib/lingscope/src/lingscope/drivers/ModelTrainer.java +39 -0
  328. data/lib/lingscope/src/lingscope/drivers/NegexDriver.java +32 -0
  329. data/lib/lingscope/src/lingscope/drivers/PosTaggerDriver.java +62 -0
  330. data/lib/lingscope/src/lingscope/drivers/SentencePosTagger.java +89 -0
  331. data/lib/lingscope/src/lingscope/drivers/SentenceTagger.java +158 -0
  332. data/lib/lingscope/src/lingscope/io/AnnotatedSentencesIO.java +53 -0
  333. data/lib/lingscope/src/lingscope/structures/AnnotatedSentence.java +105 -0
  334. data/lib/setup/data/ICD-O-3_CSV-metadata/Morphenglish.csv +1 -0
  335. data/lib/setup/data/ICD-O-3_CSV-metadata/Morphenglish.txt +2273 -0
  336. data/lib/setup/data/ICD-O-3_CSV-metadata/Topoenglish.csv +1 -0
  337. data/lib/setup/data/ICD-O-3_CSV-metadata/Topoenglish.txt +1342 -0
  338. data/lib/setup/data/ICD-O-3_CSV-metadata/icd-o3 readme.txt +21 -0
  339. data/lib/setup/data/custom_site_synonyms.csv +1 -0
  340. data/lib/setup/data/diagnosis_categorizations.csv +1 -0
  341. data/lib/setup/data/high_level_primary_cns_diagnosis_categorizations.yml +597 -0
  342. data/lib/setup/data/icdo3_sites_with_laterality.txt +11 -0
  343. data/lib/setup/data/site_site_categories.txt +28 -0
  344. data/lib/tasks/abstractor_tasks.rake +22 -0
  345. data/lib/tasks/cucumber.rake +65 -0
  346. metadata +754 -0
@@ -0,0 +1,16 @@
1
+ module Abstractor
2
+ module Methods
3
+ module Models
4
+ module AbstractorObjectType
5
+ def self.included(base)
6
+ base.send :include, SoftDelete
7
+
8
+ # Associations
9
+ base.send :has_many, :abstractor_abstraction_schemas
10
+
11
+ base.send :attr_accessible, :deleted_at, :value
12
+ end
13
+ end
14
+ end
15
+ end
16
+ end
@@ -0,0 +1,24 @@
1
+ module Abstractor
2
+ module Methods
3
+ module Models
4
+ module AbstractorObjectValue
5
+ def self.included(base)
6
+ base.send :include, SoftDelete
7
+
8
+ # Associations
9
+ base.send :has_many, :abstractor_object_value_variants
10
+ base.send :has_many, :abstractor_abstraction_schema_object_values
11
+ base.send :has_many, :abstractor_abstraction_schemas, :through => :abstractor_abstraction_schema_object_values
12
+
13
+ #Validations
14
+ base.send :attr_accessible, :value, :abstractor_object_value_variants, :abstractor_abstraction_schema_object_values, :abstractor_abstraction_schemas
15
+ end
16
+
17
+ # Instance Methods
18
+ def object_variants
19
+ [value].concat(abstractor_object_value_variants.map(&:value))
20
+ end
21
+ end
22
+ end
23
+ end
24
+ end
@@ -0,0 +1,16 @@
1
+ module Abstractor
2
+ module Methods
3
+ module Models
4
+ module AbstractorObjectValueVariant
5
+ def self.included(base)
6
+ base.send :include, SoftDelete
7
+
8
+ # Associations
9
+ base.send :belongs_to, :abstractor_object_value
10
+
11
+ base.send :attr_accessible, :abstractor_object_value, :abstractor_object_value_id, :deleted_at, :value
12
+ end
13
+ end
14
+ end
15
+ end
16
+ end
@@ -0,0 +1,16 @@
1
+ module Abstractor
2
+ module Methods
3
+ module Models
4
+ module AbstractorRelationType
5
+ def self.included(base)
6
+ base.send :include, SoftDelete
7
+
8
+ # Associations
9
+ base.send :has_many, :abstractor_abstraction_schema_relations
10
+ base.send :has_many, :subject_relations
11
+ base.send :attr_accessible, :deleted_at, :name
12
+ end
13
+ end
14
+ end
15
+ end
16
+ end
@@ -0,0 +1,17 @@
1
+ module Abstractor
2
+ module Methods
3
+ module Models
4
+ module AbstractorRuleType
5
+ def self.included(base)
6
+ base.send :include, SoftDelete
7
+
8
+ # Associations
9
+ base.send :has_many, :abstractor_subjects
10
+
11
+ base.send :attr_accessible, :deleted_at, :description, :name, :abstractor_subjects
12
+ end
13
+ end
14
+ end
15
+ end
16
+ end
17
+
@@ -0,0 +1,258 @@
1
+ module Abstractor
2
+ module Methods
3
+ module Models
4
+ module AbstractorSubject
5
+ def self.included(base)
6
+ base.send :include, SoftDelete
7
+
8
+ # Associations
9
+ base.send :belongs_to, :abstractor_rule_type
10
+ base.send :belongs_to, :abstractor_abstraction_schema
11
+
12
+ base.send :has_one, :abstractor_subject_group_member
13
+ base.send :has_one, :abstractor_subject_group, :through => :abstractor_subject_group_member
14
+
15
+ base.send :has_many, :abstractor_abstractions
16
+ base.send :has_many, :abstractor_abstraction_sources
17
+
18
+ base.send :has_many, :object_relations, :class_name => "Abstractor::AbstractorSubjectRelation", :foreign_key => "object_id"
19
+ base.send :has_many, :subject_relations, :class_name => "Abstractor::AbstractorSubjectRelation", :foreign_key => "subject_id"
20
+
21
+
22
+ base.send :attr_accessible, :abstractor_abstraction_schema, :abstractor_abstraction_schema_id, :abstractor_rule_type, :abstractor_rule_type_id, :subject_type
23
+ end
24
+
25
+ # Instance Methods
26
+ def abstract(about)
27
+ abstractor_abstraction = about.find_or_create_abstractor_abstraction(abstractor_abstraction_schema, self)
28
+ case abstractor_rule_type.name
29
+ when 'name/value'
30
+ abstract_name_value(about, abstractor_abstraction)
31
+ when 'value'
32
+ abstract_value(about, abstractor_abstraction)
33
+ when 'unknown'
34
+ abstract_unknown(about, abstractor_abstraction)
35
+ end
36
+ end
37
+
38
+ def abstract_unknown(about, abstractor_abstraction)
39
+ abstractor_abstraction_sources.each do |abstractor_abstraction_source|
40
+ create_unknown_abstractor_suggestion(about, abstractor_abstraction, abstractor_abstraction_source)
41
+ end
42
+ end
43
+
44
+ def abstract_value(about, abstractor_abstraction)
45
+ abstract_sentential_value(about, abstractor_abstraction)
46
+ abstractor_abstraction_sources.each do |abstractor_abstraction_source|
47
+ create_unknown_abstractor_suggestion(about, abstractor_abstraction, abstractor_abstraction_source)
48
+ end
49
+ end
50
+
51
+ def abstract_sentential_value(about, abstractor_abstraction)
52
+ abstractor_abstraction_sources.each do |abstractor_abstraction_source|
53
+ abstractor_abstraction_source.normalize_from_method_to_sources(about).each do |source|
54
+ abstractor_text = source[:source_type].find(source[:source_id]).send(source[:source_method])
55
+ abstractor_object_value_ids = abstractor_abstraction_schema.abstractor_object_values.map(&:id)
56
+
57
+ adapter = ActiveRecord::Base.connection.instance_values["config"][:adapter]
58
+ case adapter
59
+ when 'sqlserver'
60
+ abstractor_object_value_variants = Abstractor::AbstractorObjectValueVariant.where("abstractor_object_value_id in (?) AND EXISTS (SELECT 1 FROM #{source[:source_type].table_name} WHERE #{source[:source_type].table_name}.id = ? AND #{source[:source_type].table_name}.#{source[:source_method]} LIKE ('%' + abstractor_object_value_variants.value + '%'))", abstractor_object_value_ids, source[:source_id]).all
61
+ when 'sqlite3'
62
+ abstractor_object_value_variants = Abstractor::AbstractorObjectValueVariant.where("abstractor_object_value_id in (?) AND EXISTS (SELECT 1 FROM #{source[:source_type].table_name} WHERE #{source[:source_type].table_name}.id = ? AND #{source[:source_type].table_name}.#{source[:source_method]} LIKE ('%' || abstractor_object_value_variants.value || '%'))", abstractor_object_value_ids, source[:source_id]).all
63
+ when 'postgresql'
64
+ abstractor_object_value_variants = Abstractor::AbstractorObjectValueVariant.where("abstractor_object_value_id in (?) AND EXISTS (SELECT 1 FROM #{source[:source_type].table_name} WHERE #{source[:source_type].table_name}.id = ? AND #{source[:source_type].table_name}.#{source[:source_method]} ILIKE ('%' || abstractor_object_value_variants.value || '%'))", abstractor_object_value_ids, source[:source_id]).all
65
+ end
66
+
67
+ abstractor_object_values = abstractor_object_value_variants.map(&:abstractor_object_value).uniq
68
+
69
+ adapter = ActiveRecord::Base.connection.instance_values["config"][:adapter]
70
+ case adapter
71
+ when 'sqlserver'
72
+ abstractor_object_values.concat(Abstractor::AbstractorObjectValue.where("abstractor_object_values.id in (?) AND EXISTS (SELECT 1 FROM #{source[:source_type].table_name} WHERE #{source[:source_type].table_name}.id = ? AND #{source[:source_type].table_name}.#{source[:source_method]} LIKE ('%' + abstractor_object_values.value + '%'))", abstractor_object_value_ids, source[:source_id]).all).uniq
73
+ when 'sqlite3'
74
+ abstractor_object_values.concat(Abstractor::AbstractorObjectValue.where("abstractor_object_values.id in (?) AND EXISTS (SELECT 1 FROM #{source[:source_type].table_name} WHERE #{source[:source_type].table_name}.id = ? AND #{source[:source_type].table_name}.#{source[:source_method]} LIKE ('%' || abstractor_object_values.value || '%'))", abstractor_object_value_ids, source[:source_id]).all).uniq
75
+ when 'postgresql'
76
+ abstractor_object_values.concat(Abstractor::AbstractorObjectValue.where("abstractor_object_values.id in (?) AND EXISTS (SELECT 1 FROM #{source[:source_type].table_name} WHERE #{source[:source_type].table_name}.id = ? AND #{source[:source_type].table_name}.#{source[:source_method]} ILIKE ('%' || abstractor_object_values.value || '%'))", abstractor_object_value_ids, source[:source_id]).all).uniq
77
+ end
78
+
79
+ parser = Abstractor::Parser.new(abstractor_text)
80
+ abstractor_object_values.each do |abstractor_object_value|
81
+ object_variants(abstractor_object_value, abstractor_object_value_variants).each do |object_variant|
82
+ ranges = parser.range_all(Regexp.escape(object_variant.downcase))
83
+ if ranges.any?
84
+ ranges.each do |range|
85
+ sentence = parser.find_sentence(range)
86
+ if sentence
87
+ scoped_sentence = Abstractor::NegationDetection.parse_negation_scope(sentence[:sentence])
88
+ reject = (
89
+ Abstractor::NegationDetection.negated_match_value?(scoped_sentence[:scoped_sentence], object_variant) ||
90
+ Abstractor::NegationDetection.manual_negated_match_value?(sentence[:sentence], object_variant)
91
+ )
92
+ if !reject
93
+ suggest(abstractor_abstraction, abstractor_abstraction_source, object_variant.downcase, sentence[:sentence], source[:source_id], source[:source_type].to_s, source[:source_method], abstractor_object_value, nil, nil)
94
+ end
95
+ end
96
+ end
97
+ end
98
+ end
99
+ end
100
+ end
101
+ end
102
+ end
103
+
104
+ def abstract_name_value(about, abstractor_abstraction)
105
+ abstract_canonical_name_value(about, abstractor_abstraction)
106
+ abstract_sentential_name_value(about, abstractor_abstraction)
107
+ create_unknown_abstractor_suggestion_name_only(about, abstractor_abstraction)
108
+ abstractor_abstraction_sources.each do |abstractor_abstraction_source|
109
+ create_unknown_abstractor_suggestion(about, abstractor_abstraction, abstractor_abstraction_source)
110
+ end
111
+ end
112
+
113
+ def abstract_canonical_name_value(about, abstractor_abstraction)
114
+ abstractor_abstraction_sources.each do |abstractor_abstraction_source|
115
+ abstractor_abstraction_source.normalize_from_method_to_sources(about).each do |source|
116
+ abstractor_text = source[:source_type].find(source[:source_id]).send(source[:source_method])
117
+ parser = Abstractor::Parser.new(abstractor_text)
118
+ abstractor_abstraction_schema.predicate_variants.each do |predicate_variant|
119
+ abstractor_abstraction_schema.abstractor_object_values.each do |abstractor_object_value|
120
+ abstractor_object_value.object_variants.each do |object_variant|
121
+ match_value = "#{Regexp.escape(predicate_variant)}:\s*#{Regexp.escape(object_variant)}"
122
+ matches = parser.scan(match_value, word_boundary: true).uniq
123
+ matches.each do |match|
124
+ suggest(abstractor_abstraction, abstractor_abstraction_source, match, match, source[:source_id], source[:source_type].to_s, source[:source_method], abstractor_object_value, nil, nil)
125
+ end
126
+
127
+ match_value = "#{Regexp.escape(predicate_variant)}#{Regexp.escape(object_variant)}"
128
+ matches = parser.scan(match_value, word_boundary: true).uniq
129
+ matches.each do |match|
130
+ suggest(abstractor_abstraction, abstractor_abstraction_source, match, match, source[:source_id], source[:source_type].to_s, source[:source_method], abstractor_object_value, nil, nil)
131
+ end
132
+ end
133
+ end
134
+ end
135
+ end
136
+ end
137
+ end
138
+
139
+ def abstract_sentential_name_value(about, abstractor_abstraction)
140
+ abstractor_abstraction_sources.each do |abstractor_abstraction_source|
141
+ abstractor_abstraction_source.normalize_from_method_to_sources(about).each do |source|
142
+ abstractor_text = source[:source_type].find(source[:source_id]).send(source[:source_method])
143
+ parser = Abstractor::Parser.new(abstractor_text)
144
+ abstractor_abstraction_schema.predicate_variants.each do |predicate_variant|
145
+ ranges = parser.range_all(Regexp.escape(predicate_variant))
146
+ if ranges.any?
147
+ ranges.each do |range|
148
+ sentence = parser.find_sentence(range)
149
+ if sentence
150
+ abstractor_abstraction_schema.abstractor_object_values.each do |abstractor_object_value|
151
+ abstractor_object_value.object_variants.each do |object_variant|
152
+ match = parser.match_sentence(sentence[:sentence], Regexp.escape(object_variant))
153
+ if match
154
+ scoped_sentence = Abstractor::NegationDetection.parse_negation_scope(sentence[:sentence])
155
+ reject = (
156
+ Abstractor::NegationDetection.negated_match_value?(scoped_sentence[:scoped_sentence], predicate_variant) ||
157
+ Abstractor::NegationDetection.manual_negated_match_value?(sentence[:sentence], predicate_variant) ||
158
+ Abstractor::NegationDetection.negated_match_value?(scoped_sentence[:scoped_sentence], object_variant) ||
159
+ Abstractor::NegationDetection.manual_negated_match_value?(sentence[:sentence], object_variant)
160
+ )
161
+ if !reject
162
+ suggest(abstractor_abstraction, abstractor_abstraction_source, sentence[:sentence], sentence[:sentence], source[:source_id], source[:source_type].to_s, source[:source_method], abstractor_object_value, nil, nil)
163
+ end
164
+ end
165
+ end
166
+ end
167
+ end
168
+ end
169
+ end
170
+ end
171
+ end
172
+ end
173
+ end
174
+
175
+ def suggest(abstractor_abstraction, abstractor_abstraction_source, match_value, sentence_match_value, source_id, source_type, source_method, abstractor_object_value, unknown, not_applicable)
176
+ match_value.strip! unless match_value.nil?
177
+ sentence_match_value.strip! unless sentence_match_value.nil?
178
+ abstractor_suggestion = abstractor_abstraction.detect_abstractor_suggestion(abstractor_object_value.value) unless abstractor_object_value.nil?
179
+ if !abstractor_suggestion
180
+ abstractor_suggestion_status_needs_review = Abstractor::AbstractorSuggestionStatus.where(name: 'Needs review').first
181
+ abstractor_suggestion = Abstractor::AbstractorSuggestion.create(
182
+ abstractor_abstraction: abstractor_abstraction,
183
+ abstractor_suggestion_status: abstractor_suggestion_status_needs_review,
184
+ suggested_value: abstractor_object_value.try(:value),
185
+ unknown: unknown,
186
+ not_applicable: not_applicable
187
+ )
188
+ abstractor_suggestion.abstractor_suggestion_object_value = Abstractor::AbstractorSuggestionObjectValue.new(abstractor_object_value: abstractor_object_value)
189
+ end
190
+
191
+ abstractor_suggestion_source = abstractor_suggestion.detect_abstractor_suggestion_source(abstractor_abstraction_source, sentence_match_value, source_id, source_type)
192
+ if !abstractor_suggestion_source
193
+ Abstractor::AbstractorSuggestionSource.create(
194
+ abstractor_abstraction_source: abstractor_abstraction_source,
195
+ abstractor_suggestion: abstractor_suggestion,
196
+ match_value: match_value,
197
+ sentence_match_value: sentence_match_value,
198
+ source_id: source_id,
199
+ source_type: source_type,
200
+ source_method: source_method
201
+ )
202
+ end
203
+ abstractor_suggestion
204
+ end
205
+
206
+ def create_unknown_abstractor_suggestion_name_only(about, abstractor_abstraction)
207
+ abstractor_abstraction_sources.each do |abstractor_abstraction_source|
208
+ abstractor_abstraction_source.normalize_from_method_to_sources(about).each do |source|
209
+ abstractor_text = source[:source_type].find(source[:source_id]).send(source[:source_method])
210
+ parser = Abstractor::Parser.new(abstractor_text)
211
+ #Create an 'unknown' suggestion based on match name only if we have not made a suggstion
212
+ if abstractor_abstraction.abstractor_suggestions(true).empty?
213
+ abstractor_abstraction_schema.predicate_variants.each do |predicate_variant|
214
+ ranges = parser.range_all(Regexp.escape(predicate_variant))
215
+ if ranges
216
+ ranges.each do |range|
217
+ sentence = parser.find_sentence(range)
218
+ if sentence
219
+ scoped_sentence = Abstractor::NegationDetection.parse_negation_scope(sentence[:sentence])
220
+ reject = (
221
+ Abstractor::NegationDetection.negated_match_value?(scoped_sentence[:scoped_sentence], predicate_variant) ||
222
+ Abstractor::NegationDetection.manual_negated_match_value?(sentence[:sentence], predicate_variant)
223
+ )
224
+ if !reject
225
+ suggest(abstractor_abstraction, abstractor_abstraction_source, predicate_variant.downcase, sentence[:sentence], source[:source_id], source[:source_type].to_s, source[:source_method], nil, true, nil)
226
+ end
227
+ end
228
+ end
229
+ end
230
+ end
231
+ end
232
+ end
233
+ end
234
+ end
235
+
236
+ def create_unknown_abstractor_suggestion(about, abstractor_abstraction, abstractor_abstraction_source)
237
+ #Create an 'unknown' suggestion based on matching nothing only if we have not made a suggstion
238
+ abstractor_abstraction_source.normalize_from_method_to_sources(about).each do |source|
239
+ if abstractor_abstraction.abstractor_suggestions(true).empty?
240
+ suggest(abstractor_abstraction, abstractor_abstraction_source, nil, nil, source[:source_id], source[:source_type].to_s, source[:source_method], nil, true, nil)
241
+ end
242
+ end
243
+ end
244
+
245
+ def groupable?
246
+ !abstractor_subject_group_member.nil?
247
+ end
248
+
249
+ private
250
+
251
+ def object_variants(abstractor_object_value, abstractor_object_value_variants)
252
+ aovv = abstractor_object_value_variants.select { |abstractor_object_value_variant| abstractor_object_value_variant.abstractor_object_value_id == abstractor_object_value.id }
253
+ [abstractor_object_value.value].concat(aovv.map(&:value))
254
+ end
255
+ end
256
+ end
257
+ end
258
+ end
@@ -0,0 +1,19 @@
1
+ module Abstractor
2
+ module Methods
3
+ module Models
4
+ module AbstractorSubjectGroup
5
+ def self.included(base)
6
+ base.send :include, SoftDelete
7
+
8
+ # Associations
9
+ base.send :has_many, :abstractor_subject_group_members
10
+ base.send :has_many, :abstractor_subjects, :through => :abstractor_subject_group_members
11
+ base.send :has_many, :abstractor_abstraction_groups
12
+ base.send :has_many, :abstractor_abstractions, :through => :abstractor_abstraction_groups
13
+
14
+ base.send :attr_accessible, :deleted_at, :name
15
+ end
16
+ end
17
+ end
18
+ end
19
+ end
@@ -0,0 +1,17 @@
1
+ module Abstractor
2
+ module Methods
3
+ module Models
4
+ module AbstractorSubjectGroupMember
5
+ def self.included(base)
6
+ base.send :include, SoftDelete
7
+
8
+ # Associations
9
+ base.send :belongs_to, :abstractor_subject_group
10
+ base.send :belongs_to, :abstractor_subject
11
+
12
+ base.send :attr_accessible, :abstractor_subject_group, :abstractor_subject_group_id, :abstractor_subject_id, :display_order, :deleted_at, :abstractor_subject
13
+ end
14
+ end
15
+ end
16
+ end
17
+ end
@@ -0,0 +1,18 @@
1
+ module Abstractor
2
+ module Methods
3
+ module Models
4
+ module AbstractorSubjectRelation
5
+ def self.included(base)
6
+ base.send :include, SoftDelete
7
+
8
+ # Associations
9
+ base.send :belongs_to, :abstractor_relation_type
10
+ base.send :belongs_to, :object, :class_name => "Abstractor::AbstractorSubject", :foreign_key => "object_id"
11
+ base.send :belongs_to, :subject, :class_name => "Abstractor::AbstractorSubject", :foreign_key => "subject_id"
12
+
13
+ base.send :attr_accessible, :abstractor_relation_type, :abstractor_relation_type_id, :object, :object_id, :subject, :subject_id, :deleted_at
14
+ end
15
+ end
16
+ end
17
+ end
18
+ end
@@ -0,0 +1,88 @@
1
+ module Abstractor
2
+ module Methods
3
+ module Models
4
+ module AbstractorSuggestion
5
+ def self.included(base)
6
+ base.send :include, SoftDelete
7
+
8
+ # Associations
9
+ base.send :belongs_to, :abstractor_abstraction
10
+ base.send :belongs_to, :abstractor_suggestion_status
11
+
12
+ base.send :has_one, :abstractor_suggestion_object_value
13
+ base.send :has_one, :abstractor_object_value, :through => :abstractor_suggestion_object_value
14
+
15
+ base.send :has_many, :abstractor_suggestion_sources
16
+
17
+ base.send :attr_accessible, :abstractor_abstraction, :abstractor_abstraction_id, :abstractor_suggestion_sources, :abstractor_suggestion_source_id, :abstractor_suggestion_status, :abstractor_suggestion_status_id, :suggested_value, :deleted_at, :unknown, :not_applicable
18
+
19
+ # Hooks
20
+ base.send :after_save, :update_abstraction_value, :if => lambda {|abstractor_suggestion| abstractor_suggestion.abstractor_suggestion_status_id_changed?}
21
+ base.send :after_save, :update_siblings_status, :if => lambda {|abstractor_suggestion| abstractor_suggestion.abstractor_suggestion_status_id_changed?}
22
+ end
23
+
24
+ # Instance Methods
25
+ def update_abstraction_value
26
+ if abstractor_suggestion_status.accepted?
27
+ abstractor_abstraction.value = suggested_value
28
+ abstractor_abstraction.unknown = unknown
29
+ abstractor_abstraction.not_applicable = not_applicable
30
+ abstractor_abstraction.save!
31
+ elsif abstractor_suggestion_status.needs_review?
32
+ abstractor_abstraction.value = nil
33
+ abstractor_abstraction.unknown = nil
34
+ abstractor_abstraction.not_applicable = nil
35
+ abstractor_abstraction.save!
36
+ elsif abstractor_suggestion_status.rejected?
37
+ abstractor_abstraction.value = nil if abstractor_abstraction.value == suggested_value
38
+ abstractor_abstraction.unknown = nil if unknown && abstractor_abstraction.unknown == unknown
39
+ abstractor_abstraction.not_applicable = nil if not_applicable && abstractor_abstraction.not_applicable == not_applicable
40
+ abstractor_abstraction.save!
41
+ end
42
+ end
43
+
44
+ def update_siblings_status
45
+ rejected_status = Abstractor::AbstractorSuggestionStatus.where(:name => 'Rejected').first
46
+ needs_review_status = Abstractor::AbstractorSuggestionStatus.where(:name => 'Needs review').first
47
+
48
+ if abstractor_suggestion_status.accepted?
49
+ #reject sibling suggestions
50
+ self.sibling_suggestions.each do |abstractor_suggestion|
51
+ abstractor_suggestion.abstractor_suggestion_status = rejected_status
52
+ abstractor_suggestion.save!
53
+ end
54
+ elsif abstractor_suggestion_status.needs_review?
55
+ #reset status on sibling suggestions
56
+ self.sibling_suggestions.each do |abstractor_suggestion|
57
+ abstractor_suggestion.abstractor_suggestion_status = needs_review_status
58
+ abstractor_suggestion.save!
59
+ end
60
+ end
61
+ end
62
+
63
+ def display_value
64
+ if unknown
65
+ 'unknown'
66
+ elsif not_applicable
67
+ 'not applicable'
68
+ else
69
+ suggested_value
70
+ end
71
+ end
72
+
73
+ def sibling_suggestions
74
+ abstractor_abstraction.abstractor_suggestions.where('id != ?', id)
75
+ end
76
+
77
+ def detect_abstractor_suggestion_source(abstractor_abstraction_source, sentence_match_value, source_id, source_type)
78
+ abstractor_suggestion_source = abstractor_suggestion_sources.detect do |abstractor_suggestion_source|
79
+ abstractor_suggestion_source.abstractor_abstraction_source == abstractor_abstraction_source &&
80
+ abstractor_suggestion_source.sentence_match_value == sentence_match_value &&
81
+ abstractor_suggestion_source.source_id == source_id &&
82
+ abstractor_suggestion_source.source_type == source_type
83
+ end
84
+ end
85
+ end
86
+ end
87
+ end
88
+ end