abstractor 1.0.8

Sign up to get free protection for your applications and to get access to all the features.
Files changed (346) hide show
  1. checksums.yaml +15 -0
  2. data/MIT-LICENSE +20 -0
  3. data/README.md +14 -0
  4. data/Rakefile +33 -0
  5. data/app/assets/images/abstractor/add.png +0 -0
  6. data/app/assets/images/abstractor/ajax-loader.gif +0 -0
  7. data/app/assets/images/abstractor/bar.gif +0 -0
  8. data/app/assets/images/abstractor/bti_logo.jpg +0 -0
  9. data/app/assets/images/abstractor/bullet_arrow_down.png +0 -0
  10. data/app/assets/images/abstractor/bullet_arrow_up.png +0 -0
  11. data/app/assets/images/abstractor/cog.png +0 -0
  12. data/app/assets/images/abstractor/delete.png +0 -0
  13. data/app/assets/images/abstractor/edit.png +0 -0
  14. data/app/assets/images/abstractor/excel.png +0 -0
  15. data/app/assets/images/abstractor/favicon.ico +0 -0
  16. data/app/assets/images/abstractor/greencheck.gif +0 -0
  17. data/app/assets/images/abstractor/loading.gif +0 -0
  18. data/app/assets/images/abstractor/nu_logo.jpg +0 -0
  19. data/app/assets/images/abstractor/nubic_logo.png +0 -0
  20. data/app/assets/images/abstractor/page.png +0 -0
  21. data/app/assets/images/abstractor/rails.png +0 -0
  22. data/app/assets/images/abstractor/robert_h_lurie.jpg +0 -0
  23. data/app/assets/images/abstractor/show.png +0 -0
  24. data/app/assets/images/abstractor/switch_minus.gif +0 -0
  25. data/app/assets/images/abstractor/switch_plus.gif +0 -0
  26. data/app/assets/javascripts/abstractor/abstractor.js +89 -0
  27. data/app/assets/javascripts/abstractor/application.js +21 -0
  28. data/app/assets/javascripts/abstractor/combobox.js +301 -0
  29. data/app/assets/javascripts/abstractor/jquery/jquery.form.js +1074 -0
  30. data/app/assets/javascripts/abstractor/nested_attributes.js +69 -0
  31. data/app/assets/stylesheets/abstractor/abstractor_abstractions.css +312 -0
  32. data/app/assets/stylesheets/abstractor/application.css +21 -0
  33. data/app/assets/stylesheets/abstractor/jquery.ui.override.css.scss +73 -0
  34. data/app/controllers/abstractor/abstractor_abstraction_groups_controller.rb +5 -0
  35. data/app/controllers/abstractor/abstractor_abstractions_controller.rb +5 -0
  36. data/app/controllers/abstractor/abstractor_suggestions_controller.rb +5 -0
  37. data/app/controllers/abstractor/application_controller.rb +2 -0
  38. data/app/helpers/abstractor/application_helper.rb +4 -0
  39. data/app/models/abstractor/abstractor_abstraction.rb +6 -0
  40. data/app/models/abstractor/abstractor_abstraction_group.rb +6 -0
  41. data/app/models/abstractor/abstractor_abstraction_group_member.rb +6 -0
  42. data/app/models/abstractor/abstractor_abstraction_schema.rb +6 -0
  43. data/app/models/abstractor/abstractor_abstraction_schema_object_value.rb +6 -0
  44. data/app/models/abstractor/abstractor_abstraction_schema_predicate_variant.rb +6 -0
  45. data/app/models/abstractor/abstractor_abstraction_schema_relation.rb +6 -0
  46. data/app/models/abstractor/abstractor_abstraction_source.rb +6 -0
  47. data/app/models/abstractor/abstractor_object_type.rb +6 -0
  48. data/app/models/abstractor/abstractor_object_value.rb +6 -0
  49. data/app/models/abstractor/abstractor_object_value_variant.rb +6 -0
  50. data/app/models/abstractor/abstractor_relation_type.rb +6 -0
  51. data/app/models/abstractor/abstractor_rule_type.rb +6 -0
  52. data/app/models/abstractor/abstractor_subject.rb +6 -0
  53. data/app/models/abstractor/abstractor_subject_group.rb +6 -0
  54. data/app/models/abstractor/abstractor_subject_group_member.rb +6 -0
  55. data/app/models/abstractor/abstractor_subject_relation.rb +6 -0
  56. data/app/models/abstractor/abstractor_suggestion.rb +6 -0
  57. data/app/models/abstractor/abstractor_suggestion_object_value.rb +6 -0
  58. data/app/models/abstractor/abstractor_suggestion_source.rb +6 -0
  59. data/app/models/abstractor/abstractor_suggestion_status.rb +6 -0
  60. data/app/views/abstractor/abstractor_abstraction_groups/_form.html.haml +10 -0
  61. data/app/views/abstractor/abstractor_abstraction_groups/edit.html.haml +1 -0
  62. data/app/views/abstractor/abstractor_abstractions/_fields.html.haml +63 -0
  63. data/app/views/abstractor/abstractor_abstractions/_list.html.haml +45 -0
  64. data/app/views/abstractor/abstractor_abstractions/edit.html.haml +53 -0
  65. data/app/views/abstractor/abstractor_abstractions/show.html.haml +1 -0
  66. data/app/views/abstractor/shared/_error_messages.html.haml +5 -0
  67. data/config/cucumber.yml +8 -0
  68. data/config/routes.rb +7 -0
  69. data/db/migrate/20131227205140_create_abstractor_object_types.rb +10 -0
  70. data/db/migrate/20131227205219_create_abstractor_object_values.rb +10 -0
  71. data/db/migrate/20131227205256_create_abstractor_object_value_variants.rb +11 -0
  72. data/db/migrate/20131227205320_create_abstractor_relation_types.rb +10 -0
  73. data/db/migrate/20131227205354_create_abstractor_rule_types.rb +11 -0
  74. data/db/migrate/20131227205432_create_abstractor_abstraction_schemas.rb +13 -0
  75. data/db/migrate/20131227205456_create_abstractor_abstraction_schema_object_values.rb +10 -0
  76. data/db/migrate/20131227205529_create_abstractor_abstraction_schema_predicate_variants.rb +11 -0
  77. data/db/migrate/20131227205610_create_abstractor_abstraction_schema_relations.rb +11 -0
  78. data/db/migrate/20131227205652_create_abstractor_subjects.rb +12 -0
  79. data/db/migrate/20131227205732_create_abstractor_subject_relations.rb +11 -0
  80. data/db/migrate/20131227205831_create_abstractor_abstraction_sources.rb +11 -0
  81. data/db/migrate/20131227210211_create_abstractor_subject_groups.rb +10 -0
  82. data/db/migrate/20131227210244_create_abstractor_subject_group_members.rb +11 -0
  83. data/db/migrate/20131227210350_create_abstractor_abstraction_groups.rb +12 -0
  84. data/db/migrate/20131227210353_create_abstractor_abstraction_group_members.rb +11 -0
  85. data/db/migrate/20131227211050_create_abstractor_suggestion_statuses.rb +10 -0
  86. data/db/migrate/20131227211303_create_abstractor_abstractions.rb +15 -0
  87. data/db/migrate/20131227213427_create_abstractor_suggestions.rb +14 -0
  88. data/db/migrate/20131228041944_create_abstractor_suggestion_object_values.rb +11 -0
  89. data/db/migrate/20131228041945_create_abstractor_suggestion_sources.rb +16 -0
  90. data/db/seeds.rb +0 -0
  91. data/lib/abstractor.rb +8 -0
  92. data/lib/abstractor/abstractable.rb +190 -0
  93. data/lib/abstractor/core_ext/string.rb +99 -0
  94. data/lib/abstractor/engine.rb +14 -0
  95. data/lib/abstractor/methods/controllers/abstractor_abstraction_groups_controller.rb +37 -0
  96. data/lib/abstractor/methods/controllers/abstractor_abstractions_controller.rb +42 -0
  97. data/lib/abstractor/methods/controllers/abstractor_suggestions_controller.rb +28 -0
  98. data/lib/abstractor/methods/models/abstractor_abstraction.rb +65 -0
  99. data/lib/abstractor/methods/models/abstractor_abstraction_group.rb +37 -0
  100. data/lib/abstractor/methods/models/abstractor_abstraction_group_member.rb +17 -0
  101. data/lib/abstractor/methods/models/abstractor_abstraction_schema.rb +27 -0
  102. data/lib/abstractor/methods/models/abstractor_abstraction_schema_object_value.rb +17 -0
  103. data/lib/abstractor/methods/models/abstractor_abstraction_schema_predicate_variant.rb +16 -0
  104. data/lib/abstractor/methods/models/abstractor_abstraction_schema_relation.rb +18 -0
  105. data/lib/abstractor/methods/models/abstractor_abstraction_source.rb +29 -0
  106. data/lib/abstractor/methods/models/abstractor_object_type.rb +16 -0
  107. data/lib/abstractor/methods/models/abstractor_object_value.rb +24 -0
  108. data/lib/abstractor/methods/models/abstractor_object_value_variant.rb +16 -0
  109. data/lib/abstractor/methods/models/abstractor_relation_type.rb +16 -0
  110. data/lib/abstractor/methods/models/abstractor_rule_type.rb +17 -0
  111. data/lib/abstractor/methods/models/abstractor_subject.rb +258 -0
  112. data/lib/abstractor/methods/models/abstractor_subject_group.rb +19 -0
  113. data/lib/abstractor/methods/models/abstractor_subject_group_member.rb +17 -0
  114. data/lib/abstractor/methods/models/abstractor_subject_relation.rb +18 -0
  115. data/lib/abstractor/methods/models/abstractor_suggestion.rb +88 -0
  116. data/lib/abstractor/methods/models/abstractor_suggestion_object_value.rb +17 -0
  117. data/lib/abstractor/methods/models/abstractor_suggestion_source.rb +17 -0
  118. data/lib/abstractor/methods/models/abstractor_suggestion_status.rb +29 -0
  119. data/lib/abstractor/methods/models/soft_delete.rb +35 -0
  120. data/lib/abstractor/negation_detection.rb +43 -0
  121. data/lib/abstractor/parser.rb +76 -0
  122. data/lib/abstractor/setup.rb +24 -0
  123. data/lib/abstractor/user_interface.rb +40 -0
  124. data/lib/abstractor/utility.rb +8 -0
  125. data/lib/abstractor/version.rb +3 -0
  126. data/lib/generators/abstractor/install/install_generator.rb +118 -0
  127. data/lib/generators/abstractor/install/templates/controllers/abstractor_abstraction_groups_controller.rb +16 -0
  128. data/lib/generators/abstractor/install/templates/controllers/abstractor_abstractions_controller.rb +24 -0
  129. data/lib/generators/abstractor/install/templates/controllers/abstractor_suggestions_controller.rb +12 -0
  130. data/lib/generators/abstractor/install/templates/dictionaries.yml +235 -0
  131. data/lib/generators/abstractor/install/templates/helpers/abstractions_helper.rb +9 -0
  132. data/lib/generators/abstractor/install/templates/models/abstractor_abstraction.rb +9 -0
  133. data/lib/generators/abstractor/install/templates/models/abstractor_abstraction_group.rb +9 -0
  134. data/lib/generators/abstractor/install/templates/models/abstractor_abstraction_group_member.rb +9 -0
  135. data/lib/generators/abstractor/install/templates/models/abstractor_abstraction_schema.rb +9 -0
  136. data/lib/generators/abstractor/install/templates/models/abstractor_abstraction_schema_object_value.rb +9 -0
  137. data/lib/generators/abstractor/install/templates/models/abstractor_abstraction_schema_predicate_variant.rb +9 -0
  138. data/lib/generators/abstractor/install/templates/models/abstractor_abstraction_schema_relation.rb +9 -0
  139. data/lib/generators/abstractor/install/templates/models/abstractor_abstraction_source.rb +9 -0
  140. data/lib/generators/abstractor/install/templates/models/abstractor_object_type.rb +9 -0
  141. data/lib/generators/abstractor/install/templates/models/abstractor_object_value.rb +9 -0
  142. data/lib/generators/abstractor/install/templates/models/abstractor_object_value_variant.rb +9 -0
  143. data/lib/generators/abstractor/install/templates/models/abstractor_relation_type.rb +9 -0
  144. data/lib/generators/abstractor/install/templates/models/abstractor_rule_type.rb +9 -0
  145. data/lib/generators/abstractor/install/templates/models/abstractor_subject.rb +9 -0
  146. data/lib/generators/abstractor/install/templates/models/abstractor_subject_group.rb +9 -0
  147. data/lib/generators/abstractor/install/templates/models/abstractor_subject_group_member.rb +9 -0
  148. data/lib/generators/abstractor/install/templates/models/abstractor_subject_relation.rb +9 -0
  149. data/lib/generators/abstractor/install/templates/models/abstractor_suggestion.rb +9 -0
  150. data/lib/generators/abstractor/install/templates/models/abstractor_suggestion_object_value.rb +9 -0
  151. data/lib/generators/abstractor/install/templates/models/abstractor_suggestion_source.rb +9 -0
  152. data/lib/generators/abstractor/install/templates/models/abstractor_suggestion_status.rb +9 -0
  153. data/lib/lingscope/build.xml +74 -0
  154. data/lib/lingscope/build/built-jar.properties +4 -0
  155. data/lib/lingscope/build/classes/lingscope/algorithms/AbnerTokenizer.class +0 -0
  156. data/lib/lingscope/build/classes/lingscope/algorithms/AnnotationComparer.class +0 -0
  157. data/lib/lingscope/build/classes/lingscope/algorithms/Annotator.class +0 -0
  158. data/lib/lingscope/build/classes/lingscope/algorithms/BaselineAnnotator.class +0 -0
  159. data/lib/lingscope/build/classes/lingscope/algorithms/BaselineCueAnnotator.class +0 -0
  160. data/lib/lingscope/build/classes/lingscope/algorithms/BaselineScopeAnnotator.class +0 -0
  161. data/lib/lingscope/build/classes/lingscope/algorithms/CrfAnnotator.class +0 -0
  162. data/lib/lingscope/build/classes/lingscope/algorithms/NegexAnnotator.class +0 -0
  163. data/lib/lingscope/build/classes/lingscope/algorithms/NegexCueAnnotator.class +0 -0
  164. data/lib/lingscope/build/classes/lingscope/algorithms/NegexScopeAnnotator.class +0 -0
  165. data/lib/lingscope/build/classes/lingscope/algorithms/PosTagger.class +0 -0
  166. data/lib/lingscope/build/classes/lingscope/algorithms/negex/GenNegEx.class +0 -0
  167. data/lib/lingscope/build/classes/lingscope/algorithms/negex/Sorter.class +0 -0
  168. data/lib/lingscope/build/classes/lingscope/drivers/AnnotatedFilesMerger.class +0 -0
  169. data/lib/lingscope/build/classes/lingscope/drivers/AnnotationComparerDriver.class +0 -0
  170. data/lib/lingscope/build/classes/lingscope/drivers/BaselineDriver.class +0 -0
  171. data/lib/lingscope/build/classes/lingscope/drivers/CrfDriver.class +0 -0
  172. data/lib/lingscope/build/classes/lingscope/drivers/CueAndPosFilesMerger.class +0 -0
  173. data/lib/lingscope/build/classes/lingscope/drivers/ModelTrainer.class +0 -0
  174. data/lib/lingscope/build/classes/lingscope/drivers/NegexDriver.class +0 -0
  175. data/lib/lingscope/build/classes/lingscope/drivers/PosTaggerDriver.class +0 -0
  176. data/lib/lingscope/build/classes/lingscope/drivers/SentencePosTagger.class +0 -0
  177. data/lib/lingscope/build/classes/lingscope/drivers/SentenceTagger.class +0 -0
  178. data/lib/lingscope/build/classes/lingscope/io/AnnotatedSentencesIO.class +0 -0
  179. data/lib/lingscope/build/classes/lingscope/structures/AnnotatedSentence.class +0 -0
  180. data/lib/lingscope/dist/README.TXT +32 -0
  181. data/lib/lingscope/dist/javadoc/allclasses-frame.html +80 -0
  182. data/lib/lingscope/dist/javadoc/allclasses-noframe.html +80 -0
  183. data/lib/lingscope/dist/javadoc/constant-values.html +199 -0
  184. data/lib/lingscope/dist/javadoc/deprecated-list.html +147 -0
  185. data/lib/lingscope/dist/javadoc/help-doc.html +224 -0
  186. data/lib/lingscope/dist/javadoc/index-files/index-1.html +188 -0
  187. data/lib/lingscope/dist/javadoc/index-files/index-10.html +149 -0
  188. data/lib/lingscope/dist/javadoc/index-files/index-11.html +158 -0
  189. data/lib/lingscope/dist/javadoc/index-files/index-12.html +157 -0
  190. data/lib/lingscope/dist/javadoc/index-files/index-13.html +177 -0
  191. data/lib/lingscope/dist/javadoc/index-files/index-14.html +155 -0
  192. data/lib/lingscope/dist/javadoc/index-files/index-15.html +152 -0
  193. data/lib/lingscope/dist/javadoc/index-files/index-16.html +146 -0
  194. data/lib/lingscope/dist/javadoc/index-files/index-2.html +158 -0
  195. data/lib/lingscope/dist/javadoc/index-files/index-3.html +165 -0
  196. data/lib/lingscope/dist/javadoc/index-files/index-4.html +146 -0
  197. data/lib/lingscope/dist/javadoc/index-files/index-5.html +219 -0
  198. data/lib/lingscope/dist/javadoc/index-files/index-6.html +149 -0
  199. data/lib/lingscope/dist/javadoc/index-files/index-7.html +155 -0
  200. data/lib/lingscope/dist/javadoc/index-files/index-8.html +185 -0
  201. data/lib/lingscope/dist/javadoc/index-files/index-9.html +164 -0
  202. data/lib/lingscope/dist/javadoc/index.html +74 -0
  203. data/lib/lingscope/dist/javadoc/lingscope/algorithms/AbnerTokenizer.html +280 -0
  204. data/lib/lingscope/dist/javadoc/lingscope/algorithms/AnnotationComparer.html +526 -0
  205. data/lib/lingscope/dist/javadoc/lingscope/algorithms/Annotator.html +401 -0
  206. data/lib/lingscope/dist/javadoc/lingscope/algorithms/BaselineAnnotator.html +375 -0
  207. data/lib/lingscope/dist/javadoc/lingscope/algorithms/BaselineCueAnnotator.html +309 -0
  208. data/lib/lingscope/dist/javadoc/lingscope/algorithms/BaselineScopeAnnotator.html +340 -0
  209. data/lib/lingscope/dist/javadoc/lingscope/algorithms/CrfAnnotator.html +340 -0
  210. data/lib/lingscope/dist/javadoc/lingscope/algorithms/NegexAnnotator.html +364 -0
  211. data/lib/lingscope/dist/javadoc/lingscope/algorithms/NegexCueAnnotator.html +309 -0
  212. data/lib/lingscope/dist/javadoc/lingscope/algorithms/NegexScopeAnnotator.html +309 -0
  213. data/lib/lingscope/dist/javadoc/lingscope/algorithms/PosTagger.html +268 -0
  214. data/lib/lingscope/dist/javadoc/lingscope/algorithms/class-use/AbnerTokenizer.html +145 -0
  215. data/lib/lingscope/dist/javadoc/lingscope/algorithms/class-use/AnnotationComparer.html +145 -0
  216. data/lib/lingscope/dist/javadoc/lingscope/algorithms/class-use/Annotator.html +299 -0
  217. data/lib/lingscope/dist/javadoc/lingscope/algorithms/class-use/BaselineAnnotator.html +189 -0
  218. data/lib/lingscope/dist/javadoc/lingscope/algorithms/class-use/BaselineCueAnnotator.html +145 -0
  219. data/lib/lingscope/dist/javadoc/lingscope/algorithms/class-use/BaselineScopeAnnotator.html +145 -0
  220. data/lib/lingscope/dist/javadoc/lingscope/algorithms/class-use/CrfAnnotator.html +145 -0
  221. data/lib/lingscope/dist/javadoc/lingscope/algorithms/class-use/NegexAnnotator.html +189 -0
  222. data/lib/lingscope/dist/javadoc/lingscope/algorithms/class-use/NegexCueAnnotator.html +145 -0
  223. data/lib/lingscope/dist/javadoc/lingscope/algorithms/class-use/NegexScopeAnnotator.html +145 -0
  224. data/lib/lingscope/dist/javadoc/lingscope/algorithms/class-use/PosTagger.html +145 -0
  225. data/lib/lingscope/dist/javadoc/lingscope/algorithms/negex/GenNegEx.html +369 -0
  226. data/lib/lingscope/dist/javadoc/lingscope/algorithms/negex/Sorter.html +253 -0
  227. data/lib/lingscope/dist/javadoc/lingscope/algorithms/negex/class-use/GenNegEx.html +181 -0
  228. data/lib/lingscope/dist/javadoc/lingscope/algorithms/negex/class-use/Sorter.html +145 -0
  229. data/lib/lingscope/dist/javadoc/lingscope/algorithms/negex/package-frame.html +35 -0
  230. data/lib/lingscope/dist/javadoc/lingscope/algorithms/negex/package-summary.html +165 -0
  231. data/lib/lingscope/dist/javadoc/lingscope/algorithms/negex/package-tree.html +154 -0
  232. data/lib/lingscope/dist/javadoc/lingscope/algorithms/negex/package-use.html +174 -0
  233. data/lib/lingscope/dist/javadoc/lingscope/algorithms/package-frame.html +53 -0
  234. data/lib/lingscope/dist/javadoc/lingscope/algorithms/package-summary.html +198 -0
  235. data/lib/lingscope/dist/javadoc/lingscope/algorithms/package-tree.html +160 -0
  236. data/lib/lingscope/dist/javadoc/lingscope/algorithms/package-use.html +202 -0
  237. data/lib/lingscope/dist/javadoc/lingscope/drivers/AnnotatedFilesMerger.html +284 -0
  238. data/lib/lingscope/dist/javadoc/lingscope/drivers/AnnotationComparerDriver.html +258 -0
  239. data/lib/lingscope/dist/javadoc/lingscope/drivers/BaselineDriver.html +260 -0
  240. data/lib/lingscope/dist/javadoc/lingscope/drivers/CrfDriver.html +262 -0
  241. data/lib/lingscope/dist/javadoc/lingscope/drivers/CueAndPosFilesMerger.html +310 -0
  242. data/lib/lingscope/dist/javadoc/lingscope/drivers/ModelTrainer.html +281 -0
  243. data/lib/lingscope/dist/javadoc/lingscope/drivers/NegexDriver.html +262 -0
  244. data/lib/lingscope/dist/javadoc/lingscope/drivers/PosTaggerDriver.html +289 -0
  245. data/lib/lingscope/dist/javadoc/lingscope/drivers/SentencePosTagger.html +313 -0
  246. data/lib/lingscope/dist/javadoc/lingscope/drivers/SentenceTagger.html +512 -0
  247. data/lib/lingscope/dist/javadoc/lingscope/drivers/class-use/AnnotatedFilesMerger.html +145 -0
  248. data/lib/lingscope/dist/javadoc/lingscope/drivers/class-use/AnnotationComparerDriver.html +145 -0
  249. data/lib/lingscope/dist/javadoc/lingscope/drivers/class-use/BaselineDriver.html +145 -0
  250. data/lib/lingscope/dist/javadoc/lingscope/drivers/class-use/CrfDriver.html +145 -0
  251. data/lib/lingscope/dist/javadoc/lingscope/drivers/class-use/CueAndPosFilesMerger.html +145 -0
  252. data/lib/lingscope/dist/javadoc/lingscope/drivers/class-use/ModelTrainer.html +145 -0
  253. data/lib/lingscope/dist/javadoc/lingscope/drivers/class-use/NegexDriver.html +145 -0
  254. data/lib/lingscope/dist/javadoc/lingscope/drivers/class-use/PosTaggerDriver.html +145 -0
  255. data/lib/lingscope/dist/javadoc/lingscope/drivers/class-use/SentencePosTagger.html +145 -0
  256. data/lib/lingscope/dist/javadoc/lingscope/drivers/class-use/SentenceTagger.html +145 -0
  257. data/lib/lingscope/dist/javadoc/lingscope/drivers/package-frame.html +51 -0
  258. data/lib/lingscope/dist/javadoc/lingscope/drivers/package-summary.html +195 -0
  259. data/lib/lingscope/dist/javadoc/lingscope/drivers/package-tree.html +154 -0
  260. data/lib/lingscope/dist/javadoc/lingscope/drivers/package-use.html +145 -0
  261. data/lib/lingscope/dist/javadoc/lingscope/io/AnnotatedSentencesIO.html +285 -0
  262. data/lib/lingscope/dist/javadoc/lingscope/io/class-use/AnnotatedSentencesIO.html +145 -0
  263. data/lib/lingscope/dist/javadoc/lingscope/io/package-frame.html +33 -0
  264. data/lib/lingscope/dist/javadoc/lingscope/io/package-summary.html +158 -0
  265. data/lib/lingscope/dist/javadoc/lingscope/io/package-tree.html +154 -0
  266. data/lib/lingscope/dist/javadoc/lingscope/io/package-use.html +145 -0
  267. data/lib/lingscope/dist/javadoc/lingscope/structures/AnnotatedSentence.html +425 -0
  268. data/lib/lingscope/dist/javadoc/lingscope/structures/class-use/AnnotatedSentence.html +423 -0
  269. data/lib/lingscope/dist/javadoc/lingscope/structures/package-frame.html +33 -0
  270. data/lib/lingscope/dist/javadoc/lingscope/structures/package-summary.html +158 -0
  271. data/lib/lingscope/dist/javadoc/lingscope/structures/package-tree.html +154 -0
  272. data/lib/lingscope/dist/javadoc/lingscope/structures/package-use.html +209 -0
  273. data/lib/lingscope/dist/javadoc/overview-frame.html +51 -0
  274. data/lib/lingscope/dist/javadoc/overview-summary.html +168 -0
  275. data/lib/lingscope/dist/javadoc/overview-tree.html +159 -0
  276. data/lib/lingscope/dist/javadoc/package-list +5 -0
  277. data/lib/lingscope/dist/javadoc/resources/inherit.gif +0 -0
  278. data/lib/lingscope/dist/javadoc/stylesheet.css +29 -0
  279. data/lib/lingscope/dist/lib/abner.jar +0 -0
  280. data/lib/lingscope/dist/lib/commons-lang-2.4.jar +0 -0
  281. data/lib/lingscope/dist/lib/java_utils.jar +0 -0
  282. data/lib/lingscope/dist/lib/sptoolkit.jar +0 -0
  283. data/lib/lingscope/dist/lib/stanford-postagger.jar +0 -0
  284. data/lib/lingscope/dist/lingscope.jar +0 -0
  285. data/lib/lingscope/lingscope.zip +0 -0
  286. data/lib/lingscope/manifest.mf +3 -0
  287. data/lib/lingscope/nbproject/build-impl.xml +1338 -0
  288. data/lib/lingscope/nbproject/genfiles.properties +8 -0
  289. data/lib/lingscope/nbproject/private/config.properties +0 -0
  290. data/lib/lingscope/nbproject/private/private.properties +10 -0
  291. data/lib/lingscope/nbproject/private/private.xml +5 -0
  292. data/lib/lingscope/nbproject/project.properties +85 -0
  293. data/lib/lingscope/nbproject/project.xml +15 -0
  294. data/lib/lingscope/negation_models.zip +0 -0
  295. data/lib/lingscope/negation_models/baseline_cue_all_both.model +49 -0
  296. data/lib/lingscope/negation_models/baseline_cue_all_clinical.model +19 -0
  297. data/lib/lingscope/negation_models/crf_cue_all_both.model +0 -0
  298. data/lib/lingscope/negation_models/crf_cue_all_clinical.model +0 -0
  299. data/lib/lingscope/negation_models/crf_scope_cue_crf_all_both.model +0 -0
  300. data/lib/lingscope/negation_models/crf_scope_cue_crf_all_clinical.model +0 -0
  301. data/lib/lingscope/negation_models/crf_scope_cue_regex_all_both.model +0 -0
  302. data/lib/lingscope/negation_models/crf_scope_cue_regex_all_clinical.model +0 -0
  303. data/lib/lingscope/negation_models/crf_scope_words_all_both.model +0 -0
  304. data/lib/lingscope/negation_models/crf_scope_words_all_clinical.model +0 -0
  305. data/lib/lingscope/negation_models/crf_scope_words_crf_all_both.model +0 -0
  306. data/lib/lingscope/negation_models/crf_scope_words_crf_all_clinical.model +0 -0
  307. data/lib/lingscope/negation_models/crf_scope_words_regex_all_both.model +0 -0
  308. data/lib/lingscope/negation_models/crf_scope_words_regex_all_clinical.model +0 -0
  309. data/lib/lingscope/src/lingscope/algorithms/AbnerTokenizer.java +58 -0
  310. data/lib/lingscope/src/lingscope/algorithms/AnnotationComparer.java +207 -0
  311. data/lib/lingscope/src/lingscope/algorithms/Annotator.java +51 -0
  312. data/lib/lingscope/src/lingscope/algorithms/BaselineAnnotator.java +80 -0
  313. data/lib/lingscope/src/lingscope/algorithms/BaselineCueAnnotator.java +84 -0
  314. data/lib/lingscope/src/lingscope/algorithms/BaselineScopeAnnotator.java +101 -0
  315. data/lib/lingscope/src/lingscope/algorithms/CrfAnnotator.java +45 -0
  316. data/lib/lingscope/src/lingscope/algorithms/NegexAnnotator.java +52 -0
  317. data/lib/lingscope/src/lingscope/algorithms/NegexCueAnnotator.java +26 -0
  318. data/lib/lingscope/src/lingscope/algorithms/NegexScopeAnnotator.java +26 -0
  319. data/lib/lingscope/src/lingscope/algorithms/PosTagger.java +54 -0
  320. data/lib/lingscope/src/lingscope/algorithms/negex/GenNegEx.java +530 -0
  321. data/lib/lingscope/src/lingscope/algorithms/negex/Sorter.java +36 -0
  322. data/lib/lingscope/src/lingscope/drivers/AnnotatedFilesMerger.java +61 -0
  323. data/lib/lingscope/src/lingscope/drivers/AnnotationComparerDriver.java +22 -0
  324. data/lib/lingscope/src/lingscope/drivers/BaselineDriver.java +45 -0
  325. data/lib/lingscope/src/lingscope/drivers/CrfDriver.java +31 -0
  326. data/lib/lingscope/src/lingscope/drivers/CueAndPosFilesMerger.java +86 -0
  327. data/lib/lingscope/src/lingscope/drivers/ModelTrainer.java +39 -0
  328. data/lib/lingscope/src/lingscope/drivers/NegexDriver.java +32 -0
  329. data/lib/lingscope/src/lingscope/drivers/PosTaggerDriver.java +62 -0
  330. data/lib/lingscope/src/lingscope/drivers/SentencePosTagger.java +89 -0
  331. data/lib/lingscope/src/lingscope/drivers/SentenceTagger.java +158 -0
  332. data/lib/lingscope/src/lingscope/io/AnnotatedSentencesIO.java +53 -0
  333. data/lib/lingscope/src/lingscope/structures/AnnotatedSentence.java +105 -0
  334. data/lib/setup/data/ICD-O-3_CSV-metadata/Morphenglish.csv +1 -0
  335. data/lib/setup/data/ICD-O-3_CSV-metadata/Morphenglish.txt +2273 -0
  336. data/lib/setup/data/ICD-O-3_CSV-metadata/Topoenglish.csv +1 -0
  337. data/lib/setup/data/ICD-O-3_CSV-metadata/Topoenglish.txt +1342 -0
  338. data/lib/setup/data/ICD-O-3_CSV-metadata/icd-o3 readme.txt +21 -0
  339. data/lib/setup/data/custom_site_synonyms.csv +1 -0
  340. data/lib/setup/data/diagnosis_categorizations.csv +1 -0
  341. data/lib/setup/data/high_level_primary_cns_diagnosis_categorizations.yml +597 -0
  342. data/lib/setup/data/icdo3_sites_with_laterality.txt +11 -0
  343. data/lib/setup/data/site_site_categories.txt +28 -0
  344. data/lib/tasks/abstractor_tasks.rake +22 -0
  345. data/lib/tasks/cucumber.rake +65 -0
  346. metadata +754 -0
@@ -0,0 +1,145 @@
1
+ <!DOCTYPE HTML PUBLIC "-//W3C//DTD HTML 4.01 Transitional//EN" "http://www.w3.org/TR/html4/loose.dtd">
2
+ <!--NewPage-->
3
+ <HTML>
4
+ <HEAD>
5
+ <!-- Generated by javadoc (build 1.6.0_65) on Tue Feb 18 19:45:41 CST 2014 -->
6
+ <META http-equiv="Content-Type" content="text/html; charset=UTF-8">
7
+ <TITLE>
8
+ Uses of Package lingscope.io
9
+ </TITLE>
10
+
11
+ <META NAME="date" CONTENT="2014-02-18">
12
+
13
+ <LINK REL ="stylesheet" TYPE="text/css" HREF="../../stylesheet.css" TITLE="Style">
14
+
15
+ <SCRIPT type="text/javascript">
16
+ function windowTitle()
17
+ {
18
+ if (location.href.indexOf('is-external=true') == -1) {
19
+ parent.document.title="Uses of Package lingscope.io";
20
+ }
21
+ }
22
+ </SCRIPT>
23
+ <NOSCRIPT>
24
+ </NOSCRIPT>
25
+
26
+ </HEAD>
27
+
28
+ <BODY BGCOLOR="white" onload="windowTitle();">
29
+ <HR>
30
+
31
+
32
+ <!-- ========= START OF TOP NAVBAR ======= -->
33
+ <A NAME="navbar_top"><!-- --></A>
34
+ <A HREF="#skip-navbar_top" title="Skip navigation links"></A>
35
+ <TABLE BORDER="0" WIDTH="100%" CELLPADDING="1" CELLSPACING="0" SUMMARY="">
36
+ <TR>
37
+ <TD COLSPAN=2 BGCOLOR="#EEEEFF" CLASS="NavBarCell1">
38
+ <A NAME="navbar_top_firstrow"><!-- --></A>
39
+ <TABLE BORDER="0" CELLPADDING="0" CELLSPACING="3" SUMMARY="">
40
+ <TR ALIGN="center" VALIGN="top">
41
+ <TD BGCOLOR="#EEEEFF" CLASS="NavBarCell1"> <A HREF="../../overview-summary.html"><FONT CLASS="NavBarFont1"><B>Overview</B></FONT></A>&nbsp;</TD>
42
+ <TD BGCOLOR="#EEEEFF" CLASS="NavBarCell1"> <A HREF="package-summary.html"><FONT CLASS="NavBarFont1"><B>Package</B></FONT></A>&nbsp;</TD>
43
+ <TD BGCOLOR="#EEEEFF" CLASS="NavBarCell1"> <FONT CLASS="NavBarFont1">Class</FONT>&nbsp;</TD>
44
+ <TD BGCOLOR="#FFFFFF" CLASS="NavBarCell1Rev"> &nbsp;<FONT CLASS="NavBarFont1Rev"><B>Use</B></FONT>&nbsp;</TD>
45
+ <TD BGCOLOR="#EEEEFF" CLASS="NavBarCell1"> <A HREF="package-tree.html"><FONT CLASS="NavBarFont1"><B>Tree</B></FONT></A>&nbsp;</TD>
46
+ <TD BGCOLOR="#EEEEFF" CLASS="NavBarCell1"> <A HREF="../../deprecated-list.html"><FONT CLASS="NavBarFont1"><B>Deprecated</B></FONT></A>&nbsp;</TD>
47
+ <TD BGCOLOR="#EEEEFF" CLASS="NavBarCell1"> <A HREF="../../index-files/index-1.html"><FONT CLASS="NavBarFont1"><B>Index</B></FONT></A>&nbsp;</TD>
48
+ <TD BGCOLOR="#EEEEFF" CLASS="NavBarCell1"> <A HREF="../../help-doc.html"><FONT CLASS="NavBarFont1"><B>Help</B></FONT></A>&nbsp;</TD>
49
+ </TR>
50
+ </TABLE>
51
+ </TD>
52
+ <TD ALIGN="right" VALIGN="top" ROWSPAN=3><EM>
53
+ </EM>
54
+ </TD>
55
+ </TR>
56
+
57
+ <TR>
58
+ <TD BGCOLOR="white" CLASS="NavBarCell2"><FONT SIZE="-2">
59
+ &nbsp;PREV&nbsp;
60
+ &nbsp;NEXT</FONT></TD>
61
+ <TD BGCOLOR="white" CLASS="NavBarCell2"><FONT SIZE="-2">
62
+ <A HREF="../../index.html?lingscope/io/package-use.html" target="_top"><B>FRAMES</B></A> &nbsp;
63
+ &nbsp;<A HREF="package-use.html" target="_top"><B>NO FRAMES</B></A> &nbsp;
64
+ &nbsp;<SCRIPT type="text/javascript">
65
+ <!--
66
+ if(window==top) {
67
+ document.writeln('<A HREF="../../allclasses-noframe.html"><B>All Classes</B></A>');
68
+ }
69
+ //-->
70
+ </SCRIPT>
71
+ <NOSCRIPT>
72
+ <A HREF="../../allclasses-noframe.html"><B>All Classes</B></A>
73
+ </NOSCRIPT>
74
+
75
+
76
+ </FONT></TD>
77
+ </TR>
78
+ </TABLE>
79
+ <A NAME="skip-navbar_top"></A>
80
+ <!-- ========= END OF TOP NAVBAR ========= -->
81
+
82
+ <HR>
83
+ <CENTER>
84
+ <H2>
85
+ <B>Uses of Package<br>lingscope.io</B></H2>
86
+ </CENTER>
87
+ No usage of lingscope.io
88
+ <P>
89
+ <HR>
90
+
91
+
92
+ <!-- ======= START OF BOTTOM NAVBAR ====== -->
93
+ <A NAME="navbar_bottom"><!-- --></A>
94
+ <A HREF="#skip-navbar_bottom" title="Skip navigation links"></A>
95
+ <TABLE BORDER="0" WIDTH="100%" CELLPADDING="1" CELLSPACING="0" SUMMARY="">
96
+ <TR>
97
+ <TD COLSPAN=2 BGCOLOR="#EEEEFF" CLASS="NavBarCell1">
98
+ <A NAME="navbar_bottom_firstrow"><!-- --></A>
99
+ <TABLE BORDER="0" CELLPADDING="0" CELLSPACING="3" SUMMARY="">
100
+ <TR ALIGN="center" VALIGN="top">
101
+ <TD BGCOLOR="#EEEEFF" CLASS="NavBarCell1"> <A HREF="../../overview-summary.html"><FONT CLASS="NavBarFont1"><B>Overview</B></FONT></A>&nbsp;</TD>
102
+ <TD BGCOLOR="#EEEEFF" CLASS="NavBarCell1"> <A HREF="package-summary.html"><FONT CLASS="NavBarFont1"><B>Package</B></FONT></A>&nbsp;</TD>
103
+ <TD BGCOLOR="#EEEEFF" CLASS="NavBarCell1"> <FONT CLASS="NavBarFont1">Class</FONT>&nbsp;</TD>
104
+ <TD BGCOLOR="#FFFFFF" CLASS="NavBarCell1Rev"> &nbsp;<FONT CLASS="NavBarFont1Rev"><B>Use</B></FONT>&nbsp;</TD>
105
+ <TD BGCOLOR="#EEEEFF" CLASS="NavBarCell1"> <A HREF="package-tree.html"><FONT CLASS="NavBarFont1"><B>Tree</B></FONT></A>&nbsp;</TD>
106
+ <TD BGCOLOR="#EEEEFF" CLASS="NavBarCell1"> <A HREF="../../deprecated-list.html"><FONT CLASS="NavBarFont1"><B>Deprecated</B></FONT></A>&nbsp;</TD>
107
+ <TD BGCOLOR="#EEEEFF" CLASS="NavBarCell1"> <A HREF="../../index-files/index-1.html"><FONT CLASS="NavBarFont1"><B>Index</B></FONT></A>&nbsp;</TD>
108
+ <TD BGCOLOR="#EEEEFF" CLASS="NavBarCell1"> <A HREF="../../help-doc.html"><FONT CLASS="NavBarFont1"><B>Help</B></FONT></A>&nbsp;</TD>
109
+ </TR>
110
+ </TABLE>
111
+ </TD>
112
+ <TD ALIGN="right" VALIGN="top" ROWSPAN=3><EM>
113
+ </EM>
114
+ </TD>
115
+ </TR>
116
+
117
+ <TR>
118
+ <TD BGCOLOR="white" CLASS="NavBarCell2"><FONT SIZE="-2">
119
+ &nbsp;PREV&nbsp;
120
+ &nbsp;NEXT</FONT></TD>
121
+ <TD BGCOLOR="white" CLASS="NavBarCell2"><FONT SIZE="-2">
122
+ <A HREF="../../index.html?lingscope/io/package-use.html" target="_top"><B>FRAMES</B></A> &nbsp;
123
+ &nbsp;<A HREF="package-use.html" target="_top"><B>NO FRAMES</B></A> &nbsp;
124
+ &nbsp;<SCRIPT type="text/javascript">
125
+ <!--
126
+ if(window==top) {
127
+ document.writeln('<A HREF="../../allclasses-noframe.html"><B>All Classes</B></A>');
128
+ }
129
+ //-->
130
+ </SCRIPT>
131
+ <NOSCRIPT>
132
+ <A HREF="../../allclasses-noframe.html"><B>All Classes</B></A>
133
+ </NOSCRIPT>
134
+
135
+
136
+ </FONT></TD>
137
+ </TR>
138
+ </TABLE>
139
+ <A NAME="skip-navbar_bottom"></A>
140
+ <!-- ======== END OF BOTTOM NAVBAR ======= -->
141
+
142
+ <HR>
143
+
144
+ </BODY>
145
+ </HTML>
@@ -0,0 +1,425 @@
1
+ <!DOCTYPE HTML PUBLIC "-//W3C//DTD HTML 4.01 Transitional//EN" "http://www.w3.org/TR/html4/loose.dtd">
2
+ <!--NewPage-->
3
+ <HTML>
4
+ <HEAD>
5
+ <!-- Generated by javadoc (build 1.6.0_65) on Tue Feb 18 19:45:41 CST 2014 -->
6
+ <META http-equiv="Content-Type" content="text/html; charset=UTF-8">
7
+ <TITLE>
8
+ AnnotatedSentence
9
+ </TITLE>
10
+
11
+ <META NAME="date" CONTENT="2014-02-18">
12
+
13
+ <LINK REL ="stylesheet" TYPE="text/css" HREF="../../stylesheet.css" TITLE="Style">
14
+
15
+ <SCRIPT type="text/javascript">
16
+ function windowTitle()
17
+ {
18
+ if (location.href.indexOf('is-external=true') == -1) {
19
+ parent.document.title="AnnotatedSentence";
20
+ }
21
+ }
22
+ </SCRIPT>
23
+ <NOSCRIPT>
24
+ </NOSCRIPT>
25
+
26
+ </HEAD>
27
+
28
+ <BODY BGCOLOR="white" onload="windowTitle();">
29
+ <HR>
30
+
31
+
32
+ <!-- ========= START OF TOP NAVBAR ======= -->
33
+ <A NAME="navbar_top"><!-- --></A>
34
+ <A HREF="#skip-navbar_top" title="Skip navigation links"></A>
35
+ <TABLE BORDER="0" WIDTH="100%" CELLPADDING="1" CELLSPACING="0" SUMMARY="">
36
+ <TR>
37
+ <TD COLSPAN=2 BGCOLOR="#EEEEFF" CLASS="NavBarCell1">
38
+ <A NAME="navbar_top_firstrow"><!-- --></A>
39
+ <TABLE BORDER="0" CELLPADDING="0" CELLSPACING="3" SUMMARY="">
40
+ <TR ALIGN="center" VALIGN="top">
41
+ <TD BGCOLOR="#EEEEFF" CLASS="NavBarCell1"> <A HREF="../../overview-summary.html"><FONT CLASS="NavBarFont1"><B>Overview</B></FONT></A>&nbsp;</TD>
42
+ <TD BGCOLOR="#EEEEFF" CLASS="NavBarCell1"> <A HREF="package-summary.html"><FONT CLASS="NavBarFont1"><B>Package</B></FONT></A>&nbsp;</TD>
43
+ <TD BGCOLOR="#FFFFFF" CLASS="NavBarCell1Rev"> &nbsp;<FONT CLASS="NavBarFont1Rev"><B>Class</B></FONT>&nbsp;</TD>
44
+ <TD BGCOLOR="#EEEEFF" CLASS="NavBarCell1"> <A HREF="class-use/AnnotatedSentence.html"><FONT CLASS="NavBarFont1"><B>Use</B></FONT></A>&nbsp;</TD>
45
+ <TD BGCOLOR="#EEEEFF" CLASS="NavBarCell1"> <A HREF="package-tree.html"><FONT CLASS="NavBarFont1"><B>Tree</B></FONT></A>&nbsp;</TD>
46
+ <TD BGCOLOR="#EEEEFF" CLASS="NavBarCell1"> <A HREF="../../deprecated-list.html"><FONT CLASS="NavBarFont1"><B>Deprecated</B></FONT></A>&nbsp;</TD>
47
+ <TD BGCOLOR="#EEEEFF" CLASS="NavBarCell1"> <A HREF="../../index-files/index-1.html"><FONT CLASS="NavBarFont1"><B>Index</B></FONT></A>&nbsp;</TD>
48
+ <TD BGCOLOR="#EEEEFF" CLASS="NavBarCell1"> <A HREF="../../help-doc.html"><FONT CLASS="NavBarFont1"><B>Help</B></FONT></A>&nbsp;</TD>
49
+ </TR>
50
+ </TABLE>
51
+ </TD>
52
+ <TD ALIGN="right" VALIGN="top" ROWSPAN=3><EM>
53
+ </EM>
54
+ </TD>
55
+ </TR>
56
+
57
+ <TR>
58
+ <TD BGCOLOR="white" CLASS="NavBarCell2"><FONT SIZE="-2">
59
+ &nbsp;PREV CLASS&nbsp;
60
+ &nbsp;NEXT CLASS</FONT></TD>
61
+ <TD BGCOLOR="white" CLASS="NavBarCell2"><FONT SIZE="-2">
62
+ <A HREF="../../index.html?lingscope/structures/AnnotatedSentence.html" target="_top"><B>FRAMES</B></A> &nbsp;
63
+ &nbsp;<A HREF="AnnotatedSentence.html" target="_top"><B>NO FRAMES</B></A> &nbsp;
64
+ &nbsp;<SCRIPT type="text/javascript">
65
+ <!--
66
+ if(window==top) {
67
+ document.writeln('<A HREF="../../allclasses-noframe.html"><B>All Classes</B></A>');
68
+ }
69
+ //-->
70
+ </SCRIPT>
71
+ <NOSCRIPT>
72
+ <A HREF="../../allclasses-noframe.html"><B>All Classes</B></A>
73
+ </NOSCRIPT>
74
+
75
+
76
+ </FONT></TD>
77
+ </TR>
78
+ <TR>
79
+ <TD VALIGN="top" CLASS="NavBarCell3"><FONT SIZE="-2">
80
+ SUMMARY:&nbsp;NESTED&nbsp;|&nbsp;<A HREF="#field_summary">FIELD</A>&nbsp;|&nbsp;<A HREF="#constructor_summary">CONSTR</A>&nbsp;|&nbsp;<A HREF="#method_summary">METHOD</A></FONT></TD>
81
+ <TD VALIGN="top" CLASS="NavBarCell3"><FONT SIZE="-2">
82
+ DETAIL:&nbsp;<A HREF="#field_detail">FIELD</A>&nbsp;|&nbsp;<A HREF="#constructor_detail">CONSTR</A>&nbsp;|&nbsp;<A HREF="#method_detail">METHOD</A></FONT></TD>
83
+ </TR>
84
+ </TABLE>
85
+ <A NAME="skip-navbar_top"></A>
86
+ <!-- ========= END OF TOP NAVBAR ========= -->
87
+
88
+ <HR>
89
+ <!-- ======== START OF CLASS DATA ======== -->
90
+ <H2>
91
+ <FONT SIZE="-1">
92
+ lingscope.structures</FONT>
93
+ <BR>
94
+ Class AnnotatedSentence</H2>
95
+ <PRE>
96
+ java.lang.Object
97
+ <IMG SRC="../../resources/inherit.gif" ALT="extended by "><B>lingscope.structures.AnnotatedSentence</B>
98
+ </PRE>
99
+ <HR>
100
+ <DL>
101
+ <DT><PRE>public class <B>AnnotatedSentence</B><DT>extends java.lang.Object</DL>
102
+ </PRE>
103
+
104
+ <P>
105
+ Represents an AnnotatedSentence
106
+ <P>
107
+
108
+ <P>
109
+ <HR>
110
+
111
+ <P>
112
+ <!-- =========== FIELD SUMMARY =========== -->
113
+
114
+ <A NAME="field_summary"><!-- --></A>
115
+ <TABLE BORDER="1" WIDTH="100%" CELLPADDING="3" CELLSPACING="0" SUMMARY="">
116
+ <TR BGCOLOR="#CCCCFF" CLASS="TableHeadingColor">
117
+ <TH ALIGN="left" COLSPAN="2"><FONT SIZE="+2">
118
+ <B>Field Summary</B></FONT></TH>
119
+ </TR>
120
+ <TR BGCOLOR="white" CLASS="TableRowColor">
121
+ <TD ALIGN="right" VALIGN="top" WIDTH="1%"><FONT SIZE="-1">
122
+ <CODE>static&nbsp;java.lang.String</CODE></FONT></TD>
123
+ <TD><CODE><B><A HREF="../../lingscope/structures/AnnotatedSentence.html#nonScopeTag">nonScopeTag</A></B></CODE>
124
+
125
+ <BR>
126
+ &nbsp;&nbsp;&nbsp;&nbsp;&nbsp;&nbsp;&nbsp;&nbsp;&nbsp;&nbsp;&nbsp;</TD>
127
+ </TR>
128
+ </TABLE>
129
+ &nbsp;
130
+ <!-- ======== CONSTRUCTOR SUMMARY ======== -->
131
+
132
+ <A NAME="constructor_summary"><!-- --></A>
133
+ <TABLE BORDER="1" WIDTH="100%" CELLPADDING="3" CELLSPACING="0" SUMMARY="">
134
+ <TR BGCOLOR="#CCCCFF" CLASS="TableHeadingColor">
135
+ <TH ALIGN="left" COLSPAN="2"><FONT SIZE="+2">
136
+ <B>Constructor Summary</B></FONT></TH>
137
+ </TR>
138
+ <TR BGCOLOR="white" CLASS="TableRowColor">
139
+ <TD><CODE><B><A HREF="../../lingscope/structures/AnnotatedSentence.html#AnnotatedSentence()">AnnotatedSentence</A></B>()</CODE>
140
+
141
+ <BR>
142
+ &nbsp;&nbsp;&nbsp;&nbsp;&nbsp;&nbsp;&nbsp;&nbsp;&nbsp;&nbsp;Initializes an AnnotatedSentence object</TD>
143
+ </TR>
144
+ <TR BGCOLOR="white" CLASS="TableRowColor">
145
+ <TD><CODE><B><A HREF="../../lingscope/structures/AnnotatedSentence.html#AnnotatedSentence(java.lang.String)">AnnotatedSentence</A></B>(java.lang.String&nbsp;rawText)</CODE>
146
+
147
+ <BR>
148
+ &nbsp;&nbsp;&nbsp;&nbsp;&nbsp;&nbsp;&nbsp;&nbsp;&nbsp;&nbsp;Creates an object of AnnotatedSentence with the given rawText</TD>
149
+ </TR>
150
+ </TABLE>
151
+ &nbsp;
152
+ <!-- ========== METHOD SUMMARY =========== -->
153
+
154
+ <A NAME="method_summary"><!-- --></A>
155
+ <TABLE BORDER="1" WIDTH="100%" CELLPADDING="3" CELLSPACING="0" SUMMARY="">
156
+ <TR BGCOLOR="#CCCCFF" CLASS="TableHeadingColor">
157
+ <TH ALIGN="left" COLSPAN="2"><FONT SIZE="+2">
158
+ <B>Method Summary</B></FONT></TH>
159
+ </TR>
160
+ <TR BGCOLOR="white" CLASS="TableRowColor">
161
+ <TD ALIGN="right" VALIGN="top" WIDTH="1%"><FONT SIZE="-1">
162
+ <CODE>&nbsp;java.util.List&lt;java.lang.Boolean&gt;</CODE></FONT></TD>
163
+ <TD><CODE><B><A HREF="../../lingscope/structures/AnnotatedSentence.html#getIsAnnotatedTags()">getIsAnnotatedTags</A></B>()</CODE>
164
+
165
+ <BR>
166
+ &nbsp;&nbsp;&nbsp;&nbsp;&nbsp;&nbsp;&nbsp;&nbsp;&nbsp;&nbsp;Gets the is annotated tags for this AnnotatedSentence</TD>
167
+ </TR>
168
+ <TR BGCOLOR="white" CLASS="TableRowColor">
169
+ <TD ALIGN="right" VALIGN="top" WIDTH="1%"><FONT SIZE="-1">
170
+ <CODE>&nbsp;java.lang.String</CODE></FONT></TD>
171
+ <TD><CODE><B><A HREF="../../lingscope/structures/AnnotatedSentence.html#getRawText()">getRawText</A></B>()</CODE>
172
+
173
+ <BR>
174
+ &nbsp;&nbsp;&nbsp;&nbsp;&nbsp;&nbsp;&nbsp;&nbsp;&nbsp;&nbsp;Gets the raw text (with tags) for this AnnotatedSentence</TD>
175
+ </TR>
176
+ <TR BGCOLOR="white" CLASS="TableRowColor">
177
+ <TD ALIGN="right" VALIGN="top" WIDTH="1%"><FONT SIZE="-1">
178
+ <CODE>&nbsp;java.lang.String</CODE></FONT></TD>
179
+ <TD><CODE><B><A HREF="../../lingscope/structures/AnnotatedSentence.html#getSentenceText()">getSentenceText</A></B>()</CODE>
180
+
181
+ <BR>
182
+ &nbsp;&nbsp;&nbsp;&nbsp;&nbsp;&nbsp;&nbsp;&nbsp;&nbsp;&nbsp;Gets the sentence text (without the tags)</TD>
183
+ </TR>
184
+ <TR BGCOLOR="white" CLASS="TableRowColor">
185
+ <TD ALIGN="right" VALIGN="top" WIDTH="1%"><FONT SIZE="-1">
186
+ <CODE>&nbsp;java.util.List&lt;java.lang.String&gt;</CODE></FONT></TD>
187
+ <TD><CODE><B><A HREF="../../lingscope/structures/AnnotatedSentence.html#getTags()">getTags</A></B>()</CODE>
188
+
189
+ <BR>
190
+ &nbsp;&nbsp;&nbsp;&nbsp;&nbsp;&nbsp;&nbsp;&nbsp;&nbsp;&nbsp;Gets the tags in this AnnotatedSentence</TD>
191
+ </TR>
192
+ <TR BGCOLOR="white" CLASS="TableRowColor">
193
+ <TD ALIGN="right" VALIGN="top" WIDTH="1%"><FONT SIZE="-1">
194
+ <CODE>&nbsp;java.util.List&lt;java.lang.String&gt;</CODE></FONT></TD>
195
+ <TD><CODE><B><A HREF="../../lingscope/structures/AnnotatedSentence.html#getWords()">getWords</A></B>()</CODE>
196
+
197
+ <BR>
198
+ &nbsp;&nbsp;&nbsp;&nbsp;&nbsp;&nbsp;&nbsp;&nbsp;&nbsp;&nbsp;Gets the words in this AnnotatedSentence</TD>
199
+ </TR>
200
+ <TR BGCOLOR="white" CLASS="TableRowColor">
201
+ <TD ALIGN="right" VALIGN="top" WIDTH="1%"><FONT SIZE="-1">
202
+ <CODE>&nbsp;void</CODE></FONT></TD>
203
+ <TD><CODE><B><A HREF="../../lingscope/structures/AnnotatedSentence.html#processRawText(java.lang.String)">processRawText</A></B>(java.lang.String&nbsp;rawText)</CODE>
204
+
205
+ <BR>
206
+ &nbsp;&nbsp;&nbsp;&nbsp;&nbsp;&nbsp;&nbsp;&nbsp;&nbsp;&nbsp;Processes the given raw text and extracts tags from it</TD>
207
+ </TR>
208
+ </TABLE>
209
+ &nbsp;<A NAME="methods_inherited_from_class_java.lang.Object"><!-- --></A>
210
+ <TABLE BORDER="1" WIDTH="100%" CELLPADDING="3" CELLSPACING="0" SUMMARY="">
211
+ <TR BGCOLOR="#EEEEFF" CLASS="TableSubHeadingColor">
212
+ <TH ALIGN="left"><B>Methods inherited from class java.lang.Object</B></TH>
213
+ </TR>
214
+ <TR BGCOLOR="white" CLASS="TableRowColor">
215
+ <TD><CODE>clone, equals, finalize, getClass, hashCode, notify, notifyAll, toString, wait, wait, wait</CODE></TD>
216
+ </TR>
217
+ </TABLE>
218
+ &nbsp;
219
+ <P>
220
+
221
+ <!-- ============ FIELD DETAIL =========== -->
222
+
223
+ <A NAME="field_detail"><!-- --></A>
224
+ <TABLE BORDER="1" WIDTH="100%" CELLPADDING="3" CELLSPACING="0" SUMMARY="">
225
+ <TR BGCOLOR="#CCCCFF" CLASS="TableHeadingColor">
226
+ <TH ALIGN="left" COLSPAN="1"><FONT SIZE="+2">
227
+ <B>Field Detail</B></FONT></TH>
228
+ </TR>
229
+ </TABLE>
230
+
231
+ <A NAME="nonScopeTag"><!-- --></A><H3>
232
+ nonScopeTag</H3>
233
+ <PRE>
234
+ public static java.lang.String <B>nonScopeTag</B></PRE>
235
+ <DL>
236
+ <DL>
237
+ </DL>
238
+ </DL>
239
+
240
+ <!-- ========= CONSTRUCTOR DETAIL ======== -->
241
+
242
+ <A NAME="constructor_detail"><!-- --></A>
243
+ <TABLE BORDER="1" WIDTH="100%" CELLPADDING="3" CELLSPACING="0" SUMMARY="">
244
+ <TR BGCOLOR="#CCCCFF" CLASS="TableHeadingColor">
245
+ <TH ALIGN="left" COLSPAN="1"><FONT SIZE="+2">
246
+ <B>Constructor Detail</B></FONT></TH>
247
+ </TR>
248
+ </TABLE>
249
+
250
+ <A NAME="AnnotatedSentence()"><!-- --></A><H3>
251
+ AnnotatedSentence</H3>
252
+ <PRE>
253
+ public <B>AnnotatedSentence</B>()</PRE>
254
+ <DL>
255
+ <DD>Initializes an AnnotatedSentence object
256
+ <P>
257
+ </DL>
258
+ <HR>
259
+
260
+ <A NAME="AnnotatedSentence(java.lang.String)"><!-- --></A><H3>
261
+ AnnotatedSentence</H3>
262
+ <PRE>
263
+ public <B>AnnotatedSentence</B>(java.lang.String&nbsp;rawText)</PRE>
264
+ <DL>
265
+ <DD>Creates an object of AnnotatedSentence with the given rawText
266
+ <P>
267
+ <DL>
268
+ <DT><B>Parameters:</B><DD><CODE>rawText</CODE> - </DL>
269
+ </DL>
270
+
271
+ <!-- ============ METHOD DETAIL ========== -->
272
+
273
+ <A NAME="method_detail"><!-- --></A>
274
+ <TABLE BORDER="1" WIDTH="100%" CELLPADDING="3" CELLSPACING="0" SUMMARY="">
275
+ <TR BGCOLOR="#CCCCFF" CLASS="TableHeadingColor">
276
+ <TH ALIGN="left" COLSPAN="1"><FONT SIZE="+2">
277
+ <B>Method Detail</B></FONT></TH>
278
+ </TR>
279
+ </TABLE>
280
+
281
+ <A NAME="processRawText(java.lang.String)"><!-- --></A><H3>
282
+ processRawText</H3>
283
+ <PRE>
284
+ public final void <B>processRawText</B>(java.lang.String&nbsp;rawText)</PRE>
285
+ <DL>
286
+ <DD>Processes the given raw text and extracts tags from it
287
+ <P>
288
+ <DD><DL>
289
+ <DT><B>Parameters:</B><DD><CODE>rawText</CODE> - </DL>
290
+ </DD>
291
+ </DL>
292
+ <HR>
293
+
294
+ <A NAME="getIsAnnotatedTags()"><!-- --></A><H3>
295
+ getIsAnnotatedTags</H3>
296
+ <PRE>
297
+ public java.util.List&lt;java.lang.Boolean&gt; <B>getIsAnnotatedTags</B>()</PRE>
298
+ <DL>
299
+ <DD>Gets the is annotated tags for this AnnotatedSentence
300
+ <P>
301
+ <DD><DL>
302
+
303
+ <DT><B>Returns:</B><DD></DL>
304
+ </DD>
305
+ </DL>
306
+ <HR>
307
+
308
+ <A NAME="getRawText()"><!-- --></A><H3>
309
+ getRawText</H3>
310
+ <PRE>
311
+ public java.lang.String <B>getRawText</B>()</PRE>
312
+ <DL>
313
+ <DD>Gets the raw text (with tags) for this AnnotatedSentence
314
+ <P>
315
+ <DD><DL>
316
+
317
+ <DT><B>Returns:</B><DD></DL>
318
+ </DD>
319
+ </DL>
320
+ <HR>
321
+
322
+ <A NAME="getTags()"><!-- --></A><H3>
323
+ getTags</H3>
324
+ <PRE>
325
+ public java.util.List&lt;java.lang.String&gt; <B>getTags</B>()</PRE>
326
+ <DL>
327
+ <DD>Gets the tags in this AnnotatedSentence
328
+ <P>
329
+ <DD><DL>
330
+
331
+ <DT><B>Returns:</B><DD></DL>
332
+ </DD>
333
+ </DL>
334
+ <HR>
335
+
336
+ <A NAME="getWords()"><!-- --></A><H3>
337
+ getWords</H3>
338
+ <PRE>
339
+ public java.util.List&lt;java.lang.String&gt; <B>getWords</B>()</PRE>
340
+ <DL>
341
+ <DD>Gets the words in this AnnotatedSentence
342
+ <P>
343
+ <DD><DL>
344
+
345
+ <DT><B>Returns:</B><DD></DL>
346
+ </DD>
347
+ </DL>
348
+ <HR>
349
+
350
+ <A NAME="getSentenceText()"><!-- --></A><H3>
351
+ getSentenceText</H3>
352
+ <PRE>
353
+ public java.lang.String <B>getSentenceText</B>()</PRE>
354
+ <DL>
355
+ <DD>Gets the sentence text (without the tags)
356
+ <P>
357
+ <DD><DL>
358
+
359
+ <DT><B>Returns:</B><DD></DL>
360
+ </DD>
361
+ </DL>
362
+ <!-- ========= END OF CLASS DATA ========= -->
363
+ <HR>
364
+
365
+
366
+ <!-- ======= START OF BOTTOM NAVBAR ====== -->
367
+ <A NAME="navbar_bottom"><!-- --></A>
368
+ <A HREF="#skip-navbar_bottom" title="Skip navigation links"></A>
369
+ <TABLE BORDER="0" WIDTH="100%" CELLPADDING="1" CELLSPACING="0" SUMMARY="">
370
+ <TR>
371
+ <TD COLSPAN=2 BGCOLOR="#EEEEFF" CLASS="NavBarCell1">
372
+ <A NAME="navbar_bottom_firstrow"><!-- --></A>
373
+ <TABLE BORDER="0" CELLPADDING="0" CELLSPACING="3" SUMMARY="">
374
+ <TR ALIGN="center" VALIGN="top">
375
+ <TD BGCOLOR="#EEEEFF" CLASS="NavBarCell1"> <A HREF="../../overview-summary.html"><FONT CLASS="NavBarFont1"><B>Overview</B></FONT></A>&nbsp;</TD>
376
+ <TD BGCOLOR="#EEEEFF" CLASS="NavBarCell1"> <A HREF="package-summary.html"><FONT CLASS="NavBarFont1"><B>Package</B></FONT></A>&nbsp;</TD>
377
+ <TD BGCOLOR="#FFFFFF" CLASS="NavBarCell1Rev"> &nbsp;<FONT CLASS="NavBarFont1Rev"><B>Class</B></FONT>&nbsp;</TD>
378
+ <TD BGCOLOR="#EEEEFF" CLASS="NavBarCell1"> <A HREF="class-use/AnnotatedSentence.html"><FONT CLASS="NavBarFont1"><B>Use</B></FONT></A>&nbsp;</TD>
379
+ <TD BGCOLOR="#EEEEFF" CLASS="NavBarCell1"> <A HREF="package-tree.html"><FONT CLASS="NavBarFont1"><B>Tree</B></FONT></A>&nbsp;</TD>
380
+ <TD BGCOLOR="#EEEEFF" CLASS="NavBarCell1"> <A HREF="../../deprecated-list.html"><FONT CLASS="NavBarFont1"><B>Deprecated</B></FONT></A>&nbsp;</TD>
381
+ <TD BGCOLOR="#EEEEFF" CLASS="NavBarCell1"> <A HREF="../../index-files/index-1.html"><FONT CLASS="NavBarFont1"><B>Index</B></FONT></A>&nbsp;</TD>
382
+ <TD BGCOLOR="#EEEEFF" CLASS="NavBarCell1"> <A HREF="../../help-doc.html"><FONT CLASS="NavBarFont1"><B>Help</B></FONT></A>&nbsp;</TD>
383
+ </TR>
384
+ </TABLE>
385
+ </TD>
386
+ <TD ALIGN="right" VALIGN="top" ROWSPAN=3><EM>
387
+ </EM>
388
+ </TD>
389
+ </TR>
390
+
391
+ <TR>
392
+ <TD BGCOLOR="white" CLASS="NavBarCell2"><FONT SIZE="-2">
393
+ &nbsp;PREV CLASS&nbsp;
394
+ &nbsp;NEXT CLASS</FONT></TD>
395
+ <TD BGCOLOR="white" CLASS="NavBarCell2"><FONT SIZE="-2">
396
+ <A HREF="../../index.html?lingscope/structures/AnnotatedSentence.html" target="_top"><B>FRAMES</B></A> &nbsp;
397
+ &nbsp;<A HREF="AnnotatedSentence.html" target="_top"><B>NO FRAMES</B></A> &nbsp;
398
+ &nbsp;<SCRIPT type="text/javascript">
399
+ <!--
400
+ if(window==top) {
401
+ document.writeln('<A HREF="../../allclasses-noframe.html"><B>All Classes</B></A>');
402
+ }
403
+ //-->
404
+ </SCRIPT>
405
+ <NOSCRIPT>
406
+ <A HREF="../../allclasses-noframe.html"><B>All Classes</B></A>
407
+ </NOSCRIPT>
408
+
409
+
410
+ </FONT></TD>
411
+ </TR>
412
+ <TR>
413
+ <TD VALIGN="top" CLASS="NavBarCell3"><FONT SIZE="-2">
414
+ SUMMARY:&nbsp;NESTED&nbsp;|&nbsp;<A HREF="#field_summary">FIELD</A>&nbsp;|&nbsp;<A HREF="#constructor_summary">CONSTR</A>&nbsp;|&nbsp;<A HREF="#method_summary">METHOD</A></FONT></TD>
415
+ <TD VALIGN="top" CLASS="NavBarCell3"><FONT SIZE="-2">
416
+ DETAIL:&nbsp;<A HREF="#field_detail">FIELD</A>&nbsp;|&nbsp;<A HREF="#constructor_detail">CONSTR</A>&nbsp;|&nbsp;<A HREF="#method_detail">METHOD</A></FONT></TD>
417
+ </TR>
418
+ </TABLE>
419
+ <A NAME="skip-navbar_bottom"></A>
420
+ <!-- ======== END OF BOTTOM NAVBAR ======= -->
421
+
422
+ <HR>
423
+
424
+ </BODY>
425
+ </HTML>