xcoll 0.4.0__py3-none-any.whl → 0.5.1__py3-none-any.whl

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Files changed (324) hide show
  1. xcoll/__init__.py +2 -1
  2. xcoll/beam_elements/__init__.py +9 -2
  3. xcoll/beam_elements/absorber.py +2 -2
  4. xcoll/beam_elements/base.py +105 -67
  5. xcoll/beam_elements/blowup.py +198 -0
  6. xcoll/beam_elements/{collimators_src → elements_src}/black_absorber.h +21 -3
  7. xcoll/beam_elements/{collimators_src → elements_src}/black_crystal.h +20 -2
  8. xcoll/beam_elements/elements_src/blowup.h +42 -0
  9. xcoll/beam_elements/elements_src/emittance_monitor.h +109 -0
  10. xcoll/beam_elements/{collimators_src → elements_src}/everest_block.h +19 -2
  11. xcoll/beam_elements/{collimators_src → elements_src}/everest_collimator.h +19 -3
  12. xcoll/beam_elements/{collimators_src → elements_src}/everest_crystal.h +30 -9
  13. xcoll/beam_elements/everest.py +5 -6
  14. xcoll/beam_elements/monitor.py +428 -0
  15. xcoll/colldb.py +103 -74
  16. xcoll/general.py +4 -4
  17. xcoll/initial_distribution.py +18 -6
  18. xcoll/install.py +3 -1
  19. xcoll/interaction_record/interaction_record.py +127 -81
  20. xcoll/interaction_record/interaction_record_src/interaction_record.h +43 -43
  21. xcoll/line_tools.py +8 -9
  22. xcoll/lossmap.py +48 -38
  23. xcoll/scattering_routines/everest/amorphous.h +4 -11
  24. xcoll/scattering_routines/everest/channeling.h +3 -8
  25. xcoll/scattering_routines/everest/everest.h +4 -1
  26. xcoll/scattering_routines/everest/jaw.h +4 -3
  27. xcoll/scattering_routines/everest/materials.py +35 -15
  28. xcoll/scattering_routines/everest/multiple_coulomb_scattering.h +2 -2
  29. xcoll/scattering_routines/everest/nuclear_interaction.h +1 -1
  30. xcoll/scattering_routines/everest/properties.h +6 -1
  31. xcoll/scattering_routines/fluka/flukaio/lib/libFlukaIO64.a +0 -0
  32. xcoll/scattering_routines/geant4/collimasim/.git +1 -0
  33. xcoll/scattering_routines/geant4/collimasim/.gitignore +12 -0
  34. xcoll/scattering_routines/geant4/collimasim/.gitmodules +3 -0
  35. xcoll/scattering_routines/geant4/collimasim/CMakeLists.txt +26 -0
  36. xcoll/scattering_routines/geant4/collimasim/README.md +21 -0
  37. xcoll/scattering_routines/geant4/collimasim/docs/Makefile +20 -0
  38. xcoll/scattering_routines/geant4/collimasim/docs/make.bat +35 -0
  39. xcoll/scattering_routines/geant4/collimasim/docs/source/collimasim.rst +10 -0
  40. xcoll/scattering_routines/geant4/collimasim/docs/source/conf.py +59 -0
  41. xcoll/scattering_routines/geant4/collimasim/docs/source/index.rst +26 -0
  42. xcoll/scattering_routines/geant4/collimasim/lib/pybind11/.appveyor.yml +37 -0
  43. xcoll/scattering_routines/geant4/collimasim/lib/pybind11/.clang-format +19 -0
  44. xcoll/scattering_routines/geant4/collimasim/lib/pybind11/.clang-tidy +65 -0
  45. xcoll/scattering_routines/geant4/collimasim/lib/pybind11/.cmake-format.yaml +73 -0
  46. xcoll/scattering_routines/geant4/collimasim/lib/pybind11/.git +1 -0
  47. xcoll/scattering_routines/geant4/collimasim/lib/pybind11/.github/CODEOWNERS +9 -0
  48. xcoll/scattering_routines/geant4/collimasim/lib/pybind11/.github/CONTRIBUTING.md +386 -0
  49. xcoll/scattering_routines/geant4/collimasim/lib/pybind11/.github/ISSUE_TEMPLATE/bug-report.yml +45 -0
  50. xcoll/scattering_routines/geant4/collimasim/lib/pybind11/.github/ISSUE_TEMPLATE/config.yml +8 -0
  51. xcoll/scattering_routines/geant4/collimasim/lib/pybind11/.github/dependabot.yml +16 -0
  52. xcoll/scattering_routines/geant4/collimasim/lib/pybind11/.github/labeler.yml +8 -0
  53. xcoll/scattering_routines/geant4/collimasim/lib/pybind11/.github/labeler_merged.yml +3 -0
  54. xcoll/scattering_routines/geant4/collimasim/lib/pybind11/.github/pull_request_template.md +19 -0
  55. xcoll/scattering_routines/geant4/collimasim/lib/pybind11/.github/workflows/ci.yml +969 -0
  56. xcoll/scattering_routines/geant4/collimasim/lib/pybind11/.github/workflows/configure.yml +84 -0
  57. xcoll/scattering_routines/geant4/collimasim/lib/pybind11/.github/workflows/format.yml +48 -0
  58. xcoll/scattering_routines/geant4/collimasim/lib/pybind11/.github/workflows/labeler.yml +16 -0
  59. xcoll/scattering_routines/geant4/collimasim/lib/pybind11/.github/workflows/pip.yml +103 -0
  60. xcoll/scattering_routines/geant4/collimasim/lib/pybind11/.gitignore +45 -0
  61. xcoll/scattering_routines/geant4/collimasim/lib/pybind11/.pre-commit-config.yaml +151 -0
  62. xcoll/scattering_routines/geant4/collimasim/lib/pybind11/.readthedocs.yml +3 -0
  63. xcoll/scattering_routines/geant4/collimasim/lib/pybind11/CMakeLists.txt +297 -0
  64. xcoll/scattering_routines/geant4/collimasim/lib/pybind11/LICENSE +29 -0
  65. xcoll/scattering_routines/geant4/collimasim/lib/pybind11/MANIFEST.in +6 -0
  66. xcoll/scattering_routines/geant4/collimasim/lib/pybind11/README.rst +180 -0
  67. xcoll/scattering_routines/geant4/collimasim/lib/pybind11/docs/Doxyfile +23 -0
  68. xcoll/scattering_routines/geant4/collimasim/lib/pybind11/docs/Makefile +192 -0
  69. xcoll/scattering_routines/geant4/collimasim/lib/pybind11/docs/_static/theme_overrides.css +11 -0
  70. xcoll/scattering_routines/geant4/collimasim/lib/pybind11/docs/advanced/cast/chrono.rst +81 -0
  71. xcoll/scattering_routines/geant4/collimasim/lib/pybind11/docs/advanced/cast/custom.rst +93 -0
  72. xcoll/scattering_routines/geant4/collimasim/lib/pybind11/docs/advanced/cast/eigen.rst +310 -0
  73. xcoll/scattering_routines/geant4/collimasim/lib/pybind11/docs/advanced/cast/functional.rst +109 -0
  74. xcoll/scattering_routines/geant4/collimasim/lib/pybind11/docs/advanced/cast/index.rst +43 -0
  75. xcoll/scattering_routines/geant4/collimasim/lib/pybind11/docs/advanced/cast/overview.rst +171 -0
  76. xcoll/scattering_routines/geant4/collimasim/lib/pybind11/docs/advanced/cast/stl.rst +251 -0
  77. xcoll/scattering_routines/geant4/collimasim/lib/pybind11/docs/advanced/cast/strings.rst +305 -0
  78. xcoll/scattering_routines/geant4/collimasim/lib/pybind11/docs/advanced/classes.rst +1297 -0
  79. xcoll/scattering_routines/geant4/collimasim/lib/pybind11/docs/advanced/embedding.rst +262 -0
  80. xcoll/scattering_routines/geant4/collimasim/lib/pybind11/docs/advanced/exceptions.rst +396 -0
  81. xcoll/scattering_routines/geant4/collimasim/lib/pybind11/docs/advanced/functions.rst +568 -0
  82. xcoll/scattering_routines/geant4/collimasim/lib/pybind11/docs/advanced/misc.rst +337 -0
  83. xcoll/scattering_routines/geant4/collimasim/lib/pybind11/docs/advanced/pycpp/index.rst +13 -0
  84. xcoll/scattering_routines/geant4/collimasim/lib/pybind11/docs/advanced/pycpp/numpy.rst +463 -0
  85. xcoll/scattering_routines/geant4/collimasim/lib/pybind11/docs/advanced/pycpp/object.rst +286 -0
  86. xcoll/scattering_routines/geant4/collimasim/lib/pybind11/docs/advanced/pycpp/utilities.rst +155 -0
  87. xcoll/scattering_routines/geant4/collimasim/lib/pybind11/docs/advanced/smart_ptrs.rst +174 -0
  88. xcoll/scattering_routines/geant4/collimasim/lib/pybind11/docs/basics.rst +308 -0
  89. xcoll/scattering_routines/geant4/collimasim/lib/pybind11/docs/benchmark.py +91 -0
  90. xcoll/scattering_routines/geant4/collimasim/lib/pybind11/docs/benchmark.rst +95 -0
  91. xcoll/scattering_routines/geant4/collimasim/lib/pybind11/docs/changelog.rst +2050 -0
  92. xcoll/scattering_routines/geant4/collimasim/lib/pybind11/docs/classes.rst +542 -0
  93. xcoll/scattering_routines/geant4/collimasim/lib/pybind11/docs/cmake/index.rst +8 -0
  94. xcoll/scattering_routines/geant4/collimasim/lib/pybind11/docs/compiling.rst +648 -0
  95. xcoll/scattering_routines/geant4/collimasim/lib/pybind11/docs/conf.py +381 -0
  96. xcoll/scattering_routines/geant4/collimasim/lib/pybind11/docs/faq.rst +343 -0
  97. xcoll/scattering_routines/geant4/collimasim/lib/pybind11/docs/index.rst +48 -0
  98. xcoll/scattering_routines/geant4/collimasim/lib/pybind11/docs/installing.rst +105 -0
  99. xcoll/scattering_routines/geant4/collimasim/lib/pybind11/docs/limitations.rst +72 -0
  100. xcoll/scattering_routines/geant4/collimasim/lib/pybind11/docs/pybind11-logo.png +0 -0
  101. xcoll/scattering_routines/geant4/collimasim/lib/pybind11/docs/pybind11_vs_boost_python1.png +0 -0
  102. xcoll/scattering_routines/geant4/collimasim/lib/pybind11/docs/pybind11_vs_boost_python1.svg +427 -0
  103. xcoll/scattering_routines/geant4/collimasim/lib/pybind11/docs/pybind11_vs_boost_python2.png +0 -0
  104. xcoll/scattering_routines/geant4/collimasim/lib/pybind11/docs/pybind11_vs_boost_python2.svg +427 -0
  105. xcoll/scattering_routines/geant4/collimasim/lib/pybind11/docs/reference.rst +130 -0
  106. xcoll/scattering_routines/geant4/collimasim/lib/pybind11/docs/release.rst +96 -0
  107. xcoll/scattering_routines/geant4/collimasim/lib/pybind11/docs/requirements.txt +8 -0
  108. xcoll/scattering_routines/geant4/collimasim/lib/pybind11/docs/upgrade.rst +548 -0
  109. xcoll/scattering_routines/geant4/collimasim/lib/pybind11/include/pybind11/attr.h +605 -0
  110. xcoll/scattering_routines/geant4/collimasim/lib/pybind11/include/pybind11/buffer_info.h +144 -0
  111. xcoll/scattering_routines/geant4/collimasim/lib/pybind11/include/pybind11/cast.h +1432 -0
  112. xcoll/scattering_routines/geant4/collimasim/lib/pybind11/include/pybind11/chrono.h +213 -0
  113. xcoll/scattering_routines/geant4/collimasim/lib/pybind11/include/pybind11/common.h +2 -0
  114. xcoll/scattering_routines/geant4/collimasim/lib/pybind11/include/pybind11/complex.h +65 -0
  115. xcoll/scattering_routines/geant4/collimasim/lib/pybind11/include/pybind11/detail/class.h +709 -0
  116. xcoll/scattering_routines/geant4/collimasim/lib/pybind11/include/pybind11/detail/common.h +1021 -0
  117. xcoll/scattering_routines/geant4/collimasim/lib/pybind11/include/pybind11/detail/descr.h +104 -0
  118. xcoll/scattering_routines/geant4/collimasim/lib/pybind11/include/pybind11/detail/init.h +346 -0
  119. xcoll/scattering_routines/geant4/collimasim/lib/pybind11/include/pybind11/detail/internals.h +467 -0
  120. xcoll/scattering_routines/geant4/collimasim/lib/pybind11/include/pybind11/detail/type_caster_base.h +978 -0
  121. xcoll/scattering_routines/geant4/collimasim/lib/pybind11/include/pybind11/detail/typeid.h +55 -0
  122. xcoll/scattering_routines/geant4/collimasim/lib/pybind11/include/pybind11/eigen.h +606 -0
  123. xcoll/scattering_routines/geant4/collimasim/lib/pybind11/include/pybind11/embed.h +284 -0
  124. xcoll/scattering_routines/geant4/collimasim/lib/pybind11/include/pybind11/eval.h +163 -0
  125. xcoll/scattering_routines/geant4/collimasim/lib/pybind11/include/pybind11/functional.h +121 -0
  126. xcoll/scattering_routines/geant4/collimasim/lib/pybind11/include/pybind11/gil.h +193 -0
  127. xcoll/scattering_routines/geant4/collimasim/lib/pybind11/include/pybind11/iostream.h +275 -0
  128. xcoll/scattering_routines/geant4/collimasim/lib/pybind11/include/pybind11/numpy.h +1741 -0
  129. xcoll/scattering_routines/geant4/collimasim/lib/pybind11/include/pybind11/operators.h +163 -0
  130. xcoll/scattering_routines/geant4/collimasim/lib/pybind11/include/pybind11/options.h +65 -0
  131. xcoll/scattering_routines/geant4/collimasim/lib/pybind11/include/pybind11/pybind11.h +2497 -0
  132. xcoll/scattering_routines/geant4/collimasim/lib/pybind11/include/pybind11/pytypes.h +1879 -0
  133. xcoll/scattering_routines/geant4/collimasim/lib/pybind11/include/pybind11/stl/filesystem.h +103 -0
  134. xcoll/scattering_routines/geant4/collimasim/lib/pybind11/include/pybind11/stl.h +375 -0
  135. xcoll/scattering_routines/geant4/collimasim/lib/pybind11/include/pybind11/stl_bind.h +747 -0
  136. xcoll/scattering_routines/geant4/collimasim/lib/pybind11/noxfile.py +88 -0
  137. xcoll/scattering_routines/geant4/collimasim/lib/pybind11/pybind11/__init__.py +11 -0
  138. xcoll/scattering_routines/geant4/collimasim/lib/pybind11/pybind11/__main__.py +52 -0
  139. xcoll/scattering_routines/geant4/collimasim/lib/pybind11/pybind11/_version.py +12 -0
  140. xcoll/scattering_routines/geant4/collimasim/lib/pybind11/pybind11/_version.pyi +6 -0
  141. xcoll/scattering_routines/geant4/collimasim/lib/pybind11/pybind11/commands.py +21 -0
  142. xcoll/scattering_routines/geant4/collimasim/lib/pybind11/pybind11/py.typed +0 -0
  143. xcoll/scattering_routines/geant4/collimasim/lib/pybind11/pybind11/setup_helpers.py +482 -0
  144. xcoll/scattering_routines/geant4/collimasim/lib/pybind11/pybind11/setup_helpers.pyi +63 -0
  145. xcoll/scattering_routines/geant4/collimasim/lib/pybind11/pyproject.toml +41 -0
  146. xcoll/scattering_routines/geant4/collimasim/lib/pybind11/setup.cfg +56 -0
  147. xcoll/scattering_routines/geant4/collimasim/lib/pybind11/setup.py +155 -0
  148. xcoll/scattering_routines/geant4/collimasim/lib/pybind11/tests/CMakeLists.txt +503 -0
  149. xcoll/scattering_routines/geant4/collimasim/lib/pybind11/tests/conftest.py +208 -0
  150. xcoll/scattering_routines/geant4/collimasim/lib/pybind11/tests/constructor_stats.h +275 -0
  151. xcoll/scattering_routines/geant4/collimasim/lib/pybind11/tests/cross_module_gil_utils.cpp +73 -0
  152. xcoll/scattering_routines/geant4/collimasim/lib/pybind11/tests/env.py +33 -0
  153. xcoll/scattering_routines/geant4/collimasim/lib/pybind11/tests/extra_python_package/pytest.ini +0 -0
  154. xcoll/scattering_routines/geant4/collimasim/lib/pybind11/tests/extra_python_package/test_files.py +279 -0
  155. xcoll/scattering_routines/geant4/collimasim/lib/pybind11/tests/extra_setuptools/pytest.ini +0 -0
  156. xcoll/scattering_routines/geant4/collimasim/lib/pybind11/tests/extra_setuptools/test_setuphelper.py +143 -0
  157. xcoll/scattering_routines/geant4/collimasim/lib/pybind11/tests/local_bindings.h +85 -0
  158. xcoll/scattering_routines/geant4/collimasim/lib/pybind11/tests/object.h +179 -0
  159. xcoll/scattering_routines/geant4/collimasim/lib/pybind11/tests/pybind11_cross_module_tests.cpp +151 -0
  160. xcoll/scattering_routines/geant4/collimasim/lib/pybind11/tests/pybind11_tests.cpp +91 -0
  161. xcoll/scattering_routines/geant4/collimasim/lib/pybind11/tests/pybind11_tests.h +85 -0
  162. xcoll/scattering_routines/geant4/collimasim/lib/pybind11/tests/pytest.ini +19 -0
  163. xcoll/scattering_routines/geant4/collimasim/lib/pybind11/tests/requirements.txt +12 -0
  164. xcoll/scattering_routines/geant4/collimasim/lib/pybind11/tests/test_async.cpp +26 -0
  165. xcoll/scattering_routines/geant4/collimasim/lib/pybind11/tests/test_async.py +25 -0
  166. xcoll/scattering_routines/geant4/collimasim/lib/pybind11/tests/test_buffers.cpp +216 -0
  167. xcoll/scattering_routines/geant4/collimasim/lib/pybind11/tests/test_buffers.py +163 -0
  168. xcoll/scattering_routines/geant4/collimasim/lib/pybind11/tests/test_builtin_casters.cpp +286 -0
  169. xcoll/scattering_routines/geant4/collimasim/lib/pybind11/tests/test_builtin_casters.py +536 -0
  170. xcoll/scattering_routines/geant4/collimasim/lib/pybind11/tests/test_call_policies.cpp +107 -0
  171. xcoll/scattering_routines/geant4/collimasim/lib/pybind11/tests/test_call_policies.py +248 -0
  172. xcoll/scattering_routines/geant4/collimasim/lib/pybind11/tests/test_callbacks.cpp +227 -0
  173. xcoll/scattering_routines/geant4/collimasim/lib/pybind11/tests/test_callbacks.py +202 -0
  174. xcoll/scattering_routines/geant4/collimasim/lib/pybind11/tests/test_chrono.cpp +84 -0
  175. xcoll/scattering_routines/geant4/collimasim/lib/pybind11/tests/test_chrono.py +210 -0
  176. xcoll/scattering_routines/geant4/collimasim/lib/pybind11/tests/test_class.cpp +550 -0
  177. xcoll/scattering_routines/geant4/collimasim/lib/pybind11/tests/test_class.py +473 -0
  178. xcoll/scattering_routines/geant4/collimasim/lib/pybind11/tests/test_cmake_build/CMakeLists.txt +84 -0
  179. xcoll/scattering_routines/geant4/collimasim/lib/pybind11/tests/test_cmake_build/embed.cpp +21 -0
  180. xcoll/scattering_routines/geant4/collimasim/lib/pybind11/tests/test_cmake_build/installed_embed/CMakeLists.txt +28 -0
  181. xcoll/scattering_routines/geant4/collimasim/lib/pybind11/tests/test_cmake_build/installed_function/CMakeLists.txt +39 -0
  182. xcoll/scattering_routines/geant4/collimasim/lib/pybind11/tests/test_cmake_build/installed_target/CMakeLists.txt +46 -0
  183. xcoll/scattering_routines/geant4/collimasim/lib/pybind11/tests/test_cmake_build/main.cpp +6 -0
  184. xcoll/scattering_routines/geant4/collimasim/lib/pybind11/tests/test_cmake_build/subdirectory_embed/CMakeLists.txt +41 -0
  185. xcoll/scattering_routines/geant4/collimasim/lib/pybind11/tests/test_cmake_build/subdirectory_function/CMakeLists.txt +35 -0
  186. xcoll/scattering_routines/geant4/collimasim/lib/pybind11/tests/test_cmake_build/subdirectory_target/CMakeLists.txt +41 -0
  187. xcoll/scattering_routines/geant4/collimasim/lib/pybind11/tests/test_cmake_build/test.py +10 -0
  188. xcoll/scattering_routines/geant4/collimasim/lib/pybind11/tests/test_constants_and_functions.cpp +165 -0
  189. xcoll/scattering_routines/geant4/collimasim/lib/pybind11/tests/test_constants_and_functions.py +53 -0
  190. xcoll/scattering_routines/geant4/collimasim/lib/pybind11/tests/test_copy_move.cpp +238 -0
  191. xcoll/scattering_routines/geant4/collimasim/lib/pybind11/tests/test_copy_move.py +126 -0
  192. xcoll/scattering_routines/geant4/collimasim/lib/pybind11/tests/test_custom_type_casters.cpp +141 -0
  193. xcoll/scattering_routines/geant4/collimasim/lib/pybind11/tests/test_custom_type_casters.py +117 -0
  194. xcoll/scattering_routines/geant4/collimasim/lib/pybind11/tests/test_custom_type_setup.cpp +41 -0
  195. xcoll/scattering_routines/geant4/collimasim/lib/pybind11/tests/test_custom_type_setup.py +50 -0
  196. xcoll/scattering_routines/geant4/collimasim/lib/pybind11/tests/test_docstring_options.cpp +69 -0
  197. xcoll/scattering_routines/geant4/collimasim/lib/pybind11/tests/test_docstring_options.py +42 -0
  198. xcoll/scattering_routines/geant4/collimasim/lib/pybind11/tests/test_eigen.cpp +348 -0
  199. xcoll/scattering_routines/geant4/collimasim/lib/pybind11/tests/test_eigen.py +771 -0
  200. xcoll/scattering_routines/geant4/collimasim/lib/pybind11/tests/test_embed/CMakeLists.txt +47 -0
  201. xcoll/scattering_routines/geant4/collimasim/lib/pybind11/tests/test_embed/catch.cpp +22 -0
  202. xcoll/scattering_routines/geant4/collimasim/lib/pybind11/tests/test_embed/external_module.cpp +23 -0
  203. xcoll/scattering_routines/geant4/collimasim/lib/pybind11/tests/test_embed/test_interpreter.cpp +326 -0
  204. xcoll/scattering_routines/geant4/collimasim/lib/pybind11/tests/test_embed/test_interpreter.py +15 -0
  205. xcoll/scattering_routines/geant4/collimasim/lib/pybind11/tests/test_enum.cpp +148 -0
  206. xcoll/scattering_routines/geant4/collimasim/lib/pybind11/tests/test_enum.py +272 -0
  207. xcoll/scattering_routines/geant4/collimasim/lib/pybind11/tests/test_eval.cpp +119 -0
  208. xcoll/scattering_routines/geant4/collimasim/lib/pybind11/tests/test_eval.py +51 -0
  209. xcoll/scattering_routines/geant4/collimasim/lib/pybind11/tests/test_eval_call.py +5 -0
  210. xcoll/scattering_routines/geant4/collimasim/lib/pybind11/tests/test_exceptions.cpp +285 -0
  211. xcoll/scattering_routines/geant4/collimasim/lib/pybind11/tests/test_exceptions.h +12 -0
  212. xcoll/scattering_routines/geant4/collimasim/lib/pybind11/tests/test_exceptions.py +265 -0
  213. xcoll/scattering_routines/geant4/collimasim/lib/pybind11/tests/test_factory_constructors.cpp +397 -0
  214. xcoll/scattering_routines/geant4/collimasim/lib/pybind11/tests/test_factory_constructors.py +520 -0
  215. xcoll/scattering_routines/geant4/collimasim/lib/pybind11/tests/test_gil_scoped.cpp +49 -0
  216. xcoll/scattering_routines/geant4/collimasim/lib/pybind11/tests/test_gil_scoped.py +94 -0
  217. xcoll/scattering_routines/geant4/collimasim/lib/pybind11/tests/test_iostream.cpp +125 -0
  218. xcoll/scattering_routines/geant4/collimasim/lib/pybind11/tests/test_iostream.py +331 -0
  219. xcoll/scattering_routines/geant4/collimasim/lib/pybind11/tests/test_kwargs_and_defaults.cpp +153 -0
  220. xcoll/scattering_routines/geant4/collimasim/lib/pybind11/tests/test_kwargs_and_defaults.py +284 -0
  221. xcoll/scattering_routines/geant4/collimasim/lib/pybind11/tests/test_local_bindings.cpp +107 -0
  222. xcoll/scattering_routines/geant4/collimasim/lib/pybind11/tests/test_local_bindings.py +257 -0
  223. xcoll/scattering_routines/geant4/collimasim/lib/pybind11/tests/test_methods_and_attributes.cpp +412 -0
  224. xcoll/scattering_routines/geant4/collimasim/lib/pybind11/tests/test_methods_and_attributes.py +517 -0
  225. xcoll/scattering_routines/geant4/collimasim/lib/pybind11/tests/test_modules.cpp +102 -0
  226. xcoll/scattering_routines/geant4/collimasim/lib/pybind11/tests/test_modules.py +92 -0
  227. xcoll/scattering_routines/geant4/collimasim/lib/pybind11/tests/test_multiple_inheritance.cpp +233 -0
  228. xcoll/scattering_routines/geant4/collimasim/lib/pybind11/tests/test_multiple_inheritance.py +360 -0
  229. xcoll/scattering_routines/geant4/collimasim/lib/pybind11/tests/test_numpy_array.cpp +472 -0
  230. xcoll/scattering_routines/geant4/collimasim/lib/pybind11/tests/test_numpy_array.py +593 -0
  231. xcoll/scattering_routines/geant4/collimasim/lib/pybind11/tests/test_numpy_dtypes.cpp +524 -0
  232. xcoll/scattering_routines/geant4/collimasim/lib/pybind11/tests/test_numpy_dtypes.py +441 -0
  233. xcoll/scattering_routines/geant4/collimasim/lib/pybind11/tests/test_numpy_vectorize.cpp +103 -0
  234. xcoll/scattering_routines/geant4/collimasim/lib/pybind11/tests/test_numpy_vectorize.py +267 -0
  235. xcoll/scattering_routines/geant4/collimasim/lib/pybind11/tests/test_opaque_types.cpp +73 -0
  236. xcoll/scattering_routines/geant4/collimasim/lib/pybind11/tests/test_opaque_types.py +59 -0
  237. xcoll/scattering_routines/geant4/collimasim/lib/pybind11/tests/test_operator_overloading.cpp +235 -0
  238. xcoll/scattering_routines/geant4/collimasim/lib/pybind11/tests/test_operator_overloading.py +146 -0
  239. xcoll/scattering_routines/geant4/collimasim/lib/pybind11/tests/test_pickling.cpp +189 -0
  240. xcoll/scattering_routines/geant4/collimasim/lib/pybind11/tests/test_pickling.py +82 -0
  241. xcoll/scattering_routines/geant4/collimasim/lib/pybind11/tests/test_pytypes.cpp +560 -0
  242. xcoll/scattering_routines/geant4/collimasim/lib/pybind11/tests/test_pytypes.py +651 -0
  243. xcoll/scattering_routines/geant4/collimasim/lib/pybind11/tests/test_sequences_and_iterators.cpp +500 -0
  244. xcoll/scattering_routines/geant4/collimasim/lib/pybind11/tests/test_sequences_and_iterators.py +253 -0
  245. xcoll/scattering_routines/geant4/collimasim/lib/pybind11/tests/test_smart_ptr.cpp +452 -0
  246. xcoll/scattering_routines/geant4/collimasim/lib/pybind11/tests/test_smart_ptr.py +318 -0
  247. xcoll/scattering_routines/geant4/collimasim/lib/pybind11/tests/test_stl.cpp +342 -0
  248. xcoll/scattering_routines/geant4/collimasim/lib/pybind11/tests/test_stl.py +291 -0
  249. xcoll/scattering_routines/geant4/collimasim/lib/pybind11/tests/test_stl_binders.cpp +131 -0
  250. xcoll/scattering_routines/geant4/collimasim/lib/pybind11/tests/test_stl_binders.py +318 -0
  251. xcoll/scattering_routines/geant4/collimasim/lib/pybind11/tests/test_tagbased_polymorphic.cpp +144 -0
  252. xcoll/scattering_routines/geant4/collimasim/lib/pybind11/tests/test_tagbased_polymorphic.py +29 -0
  253. xcoll/scattering_routines/geant4/collimasim/lib/pybind11/tests/test_thread.cpp +66 -0
  254. xcoll/scattering_routines/geant4/collimasim/lib/pybind11/tests/test_thread.py +44 -0
  255. xcoll/scattering_routines/geant4/collimasim/lib/pybind11/tests/test_union.cpp +22 -0
  256. xcoll/scattering_routines/geant4/collimasim/lib/pybind11/tests/test_union.py +9 -0
  257. xcoll/scattering_routines/geant4/collimasim/lib/pybind11/tests/test_virtual_functions.cpp +510 -0
  258. xcoll/scattering_routines/geant4/collimasim/lib/pybind11/tests/test_virtual_functions.py +408 -0
  259. xcoll/scattering_routines/geant4/collimasim/lib/pybind11/tests/valgrind-numpy-scipy.supp +140 -0
  260. xcoll/scattering_routines/geant4/collimasim/lib/pybind11/tests/valgrind-python.supp +117 -0
  261. xcoll/scattering_routines/geant4/collimasim/lib/pybind11/tools/FindCatch.cmake +70 -0
  262. xcoll/scattering_routines/geant4/collimasim/lib/pybind11/tools/FindEigen3.cmake +86 -0
  263. xcoll/scattering_routines/geant4/collimasim/lib/pybind11/tools/FindPythonLibsNew.cmake +257 -0
  264. xcoll/scattering_routines/geant4/collimasim/lib/pybind11/tools/check-style.sh +44 -0
  265. xcoll/scattering_routines/geant4/collimasim/lib/pybind11/tools/cmake_uninstall.cmake.in +23 -0
  266. xcoll/scattering_routines/geant4/collimasim/lib/pybind11/tools/libsize.py +39 -0
  267. xcoll/scattering_routines/geant4/collimasim/lib/pybind11/tools/make_changelog.py +64 -0
  268. xcoll/scattering_routines/geant4/collimasim/lib/pybind11/tools/pybind11Common.cmake +402 -0
  269. xcoll/scattering_routines/geant4/collimasim/lib/pybind11/tools/pybind11Config.cmake.in +233 -0
  270. xcoll/scattering_routines/geant4/collimasim/lib/pybind11/tools/pybind11NewTools.cmake +276 -0
  271. xcoll/scattering_routines/geant4/collimasim/lib/pybind11/tools/pybind11Tools.cmake +214 -0
  272. xcoll/scattering_routines/geant4/collimasim/lib/pybind11/tools/pyproject.toml +3 -0
  273. xcoll/scattering_routines/geant4/collimasim/lib/pybind11/tools/setup_global.py.in +65 -0
  274. xcoll/scattering_routines/geant4/collimasim/lib/pybind11/tools/setup_main.py.in +41 -0
  275. xcoll/scattering_routines/geant4/collimasim/pyproject.toml +8 -0
  276. xcoll/scattering_routines/geant4/collimasim/setup.py +144 -0
  277. xcoll/scattering_routines/geant4/collimasim/src/collimasim/BDSPyATInterface.cpp +403 -0
  278. xcoll/scattering_routines/geant4/collimasim/src/collimasim/BDSPyATInterface.hh +100 -0
  279. xcoll/scattering_routines/geant4/collimasim/src/collimasim/BDSXtrackInterface.cpp +763 -0
  280. xcoll/scattering_routines/geant4/collimasim/src/collimasim/BDSXtrackInterface.hh +118 -0
  281. xcoll/scattering_routines/geant4/collimasim/src/collimasim/__init__.py +8 -0
  282. xcoll/scattering_routines/geant4/collimasim/src/collimasim/bindings.cpp +63 -0
  283. xcoll/scattering_routines/geant4/collimasim/src/collimasim/pyCollimatorPass.py +142 -0
  284. xcoll/scattering_routines/geant4/collimasim/src/collimasim/xtrack_collimator.py +556 -0
  285. xcoll/scattering_routines/geant4/collimasim/src/collimasim.egg-info/PKG-INFO +6 -0
  286. xcoll/scattering_routines/geant4/collimasim/src/collimasim.egg-info/SOURCES.txt +24 -0
  287. xcoll/scattering_routines/geant4/collimasim/src/collimasim.egg-info/dependency_links.txt +1 -0
  288. xcoll/scattering_routines/geant4/collimasim/src/collimasim.egg-info/not-zip-safe +1 -0
  289. xcoll/scattering_routines/geant4/collimasim/src/collimasim.egg-info/top_level.txt +1 -0
  290. xcoll/scattering_routines/geant4/collimasim/tests/README.md +25 -0
  291. xcoll/scattering_routines/geant4/collimasim/tests/resources/CollDB_forions.dat +25 -0
  292. xcoll/scattering_routines/geant4/collimasim/tests/resources/CollDB_new_example.dat +18 -0
  293. xcoll/scattering_routines/geant4/collimasim/tests/resources/CollDB_old_example.dat +68 -0
  294. xcoll/scattering_routines/geant4/collimasim/tests/resources/CollDB_testing.dat +15 -0
  295. xcoll/scattering_routines/geant4/collimasim/tests/resources/CollDB_yaml_example.yaml +110 -0
  296. xcoll/scattering_routines/geant4/collimasim/tests/resources/collgaps.dat +7 -0
  297. xcoll/scattering_routines/geant4/collimasim/tests/resources/collgaps_pyat_test.dat +3 -0
  298. xcoll/scattering_routines/geant4/collimasim/tests/resources/collonly_twiss_file_example.tfs +54 -0
  299. xcoll/scattering_routines/geant4/collimasim/tests/resources/settings.gmad +3 -0
  300. xcoll/scattering_routines/geant4/collimasim/tests/resources/settings_black_absorber.gmad +3 -0
  301. xcoll/scattering_routines/geant4/collimasim/tests/resources/settings_ions.gmad +5 -0
  302. xcoll/scattering_routines/geant4/collimasim/tests/resources/twiss_file_testing.tfs +51 -0
  303. xcoll/scattering_routines/geant4/collimasim/tests/test_pyat.py +65 -0
  304. xcoll/scattering_routines/geant4/collimasim/tests/test_pyat_passmethod.py +59 -0
  305. xcoll/scattering_routines/geant4/collimasim/tests/test_pyat_tracking.py +102 -0
  306. xcoll/scattering_routines/geant4/collimasim/tests/test_xtrack.py +75 -0
  307. xcoll/scattering_routines/geant4/collimasim/tests/test_xtrack_angle.py +74 -0
  308. xcoll/scattering_routines/geant4/collimasim/tests/test_xtrack_colldb_load.py +84 -0
  309. xcoll/scattering_routines/geant4/collimasim/tests/test_xtrack_interaction.py +159 -0
  310. xcoll/scattering_routines/geant4/collimasim/tests/test_xtrack_interaction_ion.py +99 -0
  311. xcoll/scattering_routines/geant4/collimasim/tests/test_xtrack_ions.py +78 -0
  312. xcoll/scattering_routines/geant4/collimasim/tests/test_xtrack_lost_energy.py +88 -0
  313. xcoll/scattering_routines/geant4/collimasim/tests/test_xtrack_tilt.py +80 -0
  314. xcoll/scattering_routines/geant4/collimasim/tests/test_xtrack_tracking.py +97 -0
  315. xcoll/scattering_routines/geant4/collimasim/tests/test_xtrack_tracking_ions.py +96 -0
  316. xcoll/scattering_routines/geometry/collimator_geometry.h +9 -10
  317. xcoll/scattering_routines/geometry/crystal_geometry.h +9 -6
  318. {xcoll-0.4.0.dist-info → xcoll-0.5.1.dist-info}/METADATA +1 -1
  319. xcoll-0.5.1.dist-info/RECORD +413 -0
  320. xcoll/scattering_routines/fluka/build_fluka_input.py +0 -58
  321. xcoll-0.4.0.dist-info/RECORD +0 -126
  322. {xcoll-0.4.0.dist-info → xcoll-0.5.1.dist-info}/LICENSE +0 -0
  323. {xcoll-0.4.0.dist-info → xcoll-0.5.1.dist-info}/NOTICE +0 -0
  324. {xcoll-0.4.0.dist-info → xcoll-0.5.1.dist-info}/WHEEL +0 -0
@@ -0,0 +1,144 @@
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+ /*
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+ pybind11/buffer_info.h: Python buffer object interface
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+
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+ Copyright (c) 2016 Wenzel Jakob <wenzel.jakob@epfl.ch>
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+
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+ All rights reserved. Use of this source code is governed by a
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+ BSD-style license that can be found in the LICENSE file.
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+ */
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+
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+ #pragma once
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+
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+ #include "detail/common.h"
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+
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+ PYBIND11_NAMESPACE_BEGIN(PYBIND11_NAMESPACE)
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+
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+ PYBIND11_NAMESPACE_BEGIN(detail)
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+
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+ // Default, C-style strides
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+ inline std::vector<ssize_t> c_strides(const std::vector<ssize_t> &shape, ssize_t itemsize) {
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+ auto ndim = shape.size();
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+ std::vector<ssize_t> strides(ndim, itemsize);
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+ if (ndim > 0)
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+ for (size_t i = ndim - 1; i > 0; --i)
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+ strides[i - 1] = strides[i] * shape[i];
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+ return strides;
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+ }
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+
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+ // F-style strides; default when constructing an array_t with `ExtraFlags & f_style`
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+ inline std::vector<ssize_t> f_strides(const std::vector<ssize_t> &shape, ssize_t itemsize) {
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+ auto ndim = shape.size();
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+ std::vector<ssize_t> strides(ndim, itemsize);
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+ for (size_t i = 1; i < ndim; ++i)
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+ strides[i] = strides[i - 1] * shape[i - 1];
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+ return strides;
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+ }
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+
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+ PYBIND11_NAMESPACE_END(detail)
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+
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+ /// Information record describing a Python buffer object
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+ struct buffer_info {
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+ void *ptr = nullptr; // Pointer to the underlying storage
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+ ssize_t itemsize = 0; // Size of individual items in bytes
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+ ssize_t size = 0; // Total number of entries
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+ std::string format; // For homogeneous buffers, this should be set to format_descriptor<T>::format()
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+ ssize_t ndim = 0; // Number of dimensions
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+ std::vector<ssize_t> shape; // Shape of the tensor (1 entry per dimension)
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+ std::vector<ssize_t> strides; // Number of bytes between adjacent entries (for each per dimension)
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+ bool readonly = false; // flag to indicate if the underlying storage may be written to
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+
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+ buffer_info() = default;
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+
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+ buffer_info(void *ptr, ssize_t itemsize, const std::string &format, ssize_t ndim,
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+ detail::any_container<ssize_t> shape_in, detail::any_container<ssize_t> strides_in, bool readonly=false)
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+ : ptr(ptr), itemsize(itemsize), size(1), format(format), ndim(ndim),
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+ shape(std::move(shape_in)), strides(std::move(strides_in)), readonly(readonly) {
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+ if (ndim != (ssize_t) shape.size() || ndim != (ssize_t) strides.size())
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+ pybind11_fail("buffer_info: ndim doesn't match shape and/or strides length");
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+ for (size_t i = 0; i < (size_t) ndim; ++i)
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+ size *= shape[i];
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+ }
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+
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+ template <typename T>
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+ buffer_info(T *ptr, detail::any_container<ssize_t> shape_in, detail::any_container<ssize_t> strides_in, bool readonly=false)
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+ : buffer_info(private_ctr_tag(), ptr, sizeof(T), format_descriptor<T>::format(), static_cast<ssize_t>(shape_in->size()), std::move(shape_in), std::move(strides_in), readonly) { }
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+
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+ buffer_info(void *ptr, ssize_t itemsize, const std::string &format, ssize_t size, bool readonly=false)
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+ : buffer_info(ptr, itemsize, format, 1, {size}, {itemsize}, readonly) { }
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+
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+ template <typename T>
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+ buffer_info(T *ptr, ssize_t size, bool readonly=false)
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+ : buffer_info(ptr, sizeof(T), format_descriptor<T>::format(), size, readonly) { }
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+
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+ template <typename T>
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+ buffer_info(const T *ptr, ssize_t size, bool readonly=true)
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+ : buffer_info(const_cast<T*>(ptr), sizeof(T), format_descriptor<T>::format(), size, readonly) { }
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+
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+ explicit buffer_info(Py_buffer *view, bool ownview = true)
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+ : buffer_info(view->buf, view->itemsize, view->format, view->ndim,
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+ {view->shape, view->shape + view->ndim},
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+ /* Though buffer::request() requests PyBUF_STRIDES, ctypes objects
81
+ * ignore this flag and return a view with NULL strides.
82
+ * When strides are NULL, build them manually. */
83
+ view->strides
84
+ ? std::vector<ssize_t>(view->strides, view->strides + view->ndim)
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+ : detail::c_strides({view->shape, view->shape + view->ndim}, view->itemsize),
86
+ (view->readonly != 0)) {
87
+ this->m_view = view;
88
+ this->ownview = ownview;
89
+ }
90
+
91
+ buffer_info(const buffer_info &) = delete;
92
+ buffer_info& operator=(const buffer_info &) = delete;
93
+
94
+ buffer_info(buffer_info &&other) noexcept { (*this) = std::move(other); }
95
+
96
+ buffer_info &operator=(buffer_info &&rhs) noexcept {
97
+ ptr = rhs.ptr;
98
+ itemsize = rhs.itemsize;
99
+ size = rhs.size;
100
+ format = std::move(rhs.format);
101
+ ndim = rhs.ndim;
102
+ shape = std::move(rhs.shape);
103
+ strides = std::move(rhs.strides);
104
+ std::swap(m_view, rhs.m_view);
105
+ std::swap(ownview, rhs.ownview);
106
+ readonly = rhs.readonly;
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+ return *this;
108
+ }
109
+
110
+ ~buffer_info() {
111
+ if (m_view && ownview) { PyBuffer_Release(m_view); delete m_view; }
112
+ }
113
+
114
+ Py_buffer *view() const { return m_view; }
115
+ Py_buffer *&view() { return m_view; }
116
+ private:
117
+ struct private_ctr_tag { };
118
+
119
+ buffer_info(private_ctr_tag, void *ptr, ssize_t itemsize, const std::string &format, ssize_t ndim,
120
+ detail::any_container<ssize_t> &&shape_in, detail::any_container<ssize_t> &&strides_in, bool readonly)
121
+ : buffer_info(ptr, itemsize, format, ndim, std::move(shape_in), std::move(strides_in), readonly) { }
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+
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+ Py_buffer *m_view = nullptr;
124
+ bool ownview = false;
125
+ };
126
+
127
+ PYBIND11_NAMESPACE_BEGIN(detail)
128
+
129
+ template <typename T, typename SFINAE = void> struct compare_buffer_info {
130
+ static bool compare(const buffer_info& b) {
131
+ return b.format == format_descriptor<T>::format() && b.itemsize == (ssize_t) sizeof(T);
132
+ }
133
+ };
134
+
135
+ template <typename T> struct compare_buffer_info<T, detail::enable_if_t<std::is_integral<T>::value>> {
136
+ static bool compare(const buffer_info& b) {
137
+ return (size_t) b.itemsize == sizeof(T) && (b.format == format_descriptor<T>::value ||
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+ ((sizeof(T) == sizeof(long)) && b.format == (std::is_unsigned<T>::value ? "L" : "l")) ||
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+ ((sizeof(T) == sizeof(size_t)) && b.format == (std::is_unsigned<T>::value ? "N" : "n")));
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+ }
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+ };
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+
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+ PYBIND11_NAMESPACE_END(detail)
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+ PYBIND11_NAMESPACE_END(PYBIND11_NAMESPACE)