wormsim 0.0.1__py3-none-any.whl

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Files changed (796) hide show
  1. wormsim/__init__.py +0 -0
  2. wormsim/abstract_circuit.py +172 -0
  3. wormsim/circuit.pkl +0 -0
  4. wormsim/components/__init__.py +0 -0
  5. wormsim/components/mechanism/__init__.py +0 -0
  6. wormsim/components/mechanism/modfile/__init__.py +0 -0
  7. wormsim/components/mechanism/modfile/cainternm.mod +75 -0
  8. wormsim/components/mechanism/modfile/cca1.mod +87 -0
  9. wormsim/components/mechanism/modfile/egl19.mod +100 -0
  10. wormsim/components/mechanism/modfile/egl2.mod +76 -0
  11. wormsim/components/mechanism/modfile/egl36.mod +92 -0
  12. wormsim/components/mechanism/modfile/exc_syn_advance.mod +91 -0
  13. wormsim/components/mechanism/modfile/gapjunction.mod +41 -0
  14. wormsim/components/mechanism/modfile/gapjunction_advance.mod +40 -0
  15. wormsim/components/mechanism/modfile/inh_syn_advance.mod +91 -0
  16. wormsim/components/mechanism/modfile/irk.mod +76 -0
  17. wormsim/components/mechanism/modfile/kcnl.mod +76 -0
  18. wormsim/components/mechanism/modfile/kqt3.mod +110 -0
  19. wormsim/components/mechanism/modfile/kvs1.mod +87 -0
  20. wormsim/components/mechanism/modfile/nca.mod +41 -0
  21. wormsim/components/mechanism/modfile/neuron_to_neuron_exc_syn.mod +92 -0
  22. wormsim/components/mechanism/modfile/neuron_to_neuron_inh_syn.mod +92 -0
  23. wormsim/components/mechanism/modfile/shk1.mod +86 -0
  24. wormsim/components/mechanism/modfile/shl1.mod +101 -0
  25. wormsim/components/mechanism/modfile/slo1_egl19.mod +148 -0
  26. wormsim/components/mechanism/modfile/slo1_unc2.mod +139 -0
  27. wormsim/components/mechanism/modfile/slo2_egl19.mod +148 -0
  28. wormsim/components/mechanism/modfile/slo2_unc2.mod +138 -0
  29. wormsim/components/mechanism/modfile/unc2.mod +90 -0
  30. wormsim/components/mechanism/x86_64/__init__.py +0 -0
  31. wormsim/components/mechanism/x86_64/cainternm.c +594 -0
  32. wormsim/components/mechanism/x86_64/cainternm.o +0 -0
  33. wormsim/components/mechanism/x86_64/cca1.c +621 -0
  34. wormsim/components/mechanism/x86_64/cca1.o +0 -0
  35. wormsim/components/mechanism/x86_64/egl19.c +681 -0
  36. wormsim/components/mechanism/x86_64/egl19.o +0 -0
  37. wormsim/components/mechanism/x86_64/egl2.c +569 -0
  38. wormsim/components/mechanism/x86_64/egl2.o +0 -0
  39. wormsim/components/mechanism/x86_64/egl36.c +615 -0
  40. wormsim/components/mechanism/x86_64/egl36.o +0 -0
  41. wormsim/components/mechanism/x86_64/exc_syn_advance.c +587 -0
  42. wormsim/components/mechanism/x86_64/exc_syn_advance.o +0 -0
  43. wormsim/components/mechanism/x86_64/gapjunction.c +364 -0
  44. wormsim/components/mechanism/x86_64/gapjunction.o +0 -0
  45. wormsim/components/mechanism/x86_64/gapjunction_advance.c +378 -0
  46. wormsim/components/mechanism/x86_64/gapjunction_advance.o +0 -0
  47. wormsim/components/mechanism/x86_64/inh_syn_advance.c +587 -0
  48. wormsim/components/mechanism/x86_64/inh_syn_advance.o +0 -0
  49. wormsim/components/mechanism/x86_64/irk.c +577 -0
  50. wormsim/components/mechanism/x86_64/irk.o +0 -0
  51. wormsim/components/mechanism/x86_64/kcnl.c +565 -0
  52. wormsim/components/mechanism/x86_64/kcnl.o +0 -0
  53. wormsim/components/mechanism/x86_64/kqt3.c +723 -0
  54. wormsim/components/mechanism/x86_64/kqt3.o +0 -0
  55. wormsim/components/mechanism/x86_64/kvs1.c +621 -0
  56. wormsim/components/mechanism/x86_64/kvs1.o +0 -0
  57. wormsim/components/mechanism/x86_64/makemod2c_inc +185 -0
  58. wormsim/components/mechanism/x86_64/mod_func.c +82 -0
  59. wormsim/components/mechanism/x86_64/mod_func.o +0 -0
  60. wormsim/components/mechanism/x86_64/nca.c +366 -0
  61. wormsim/components/mechanism/x86_64/nca.o +0 -0
  62. wormsim/components/mechanism/x86_64/neuron_to_neuron_exc_syn.c +572 -0
  63. wormsim/components/mechanism/x86_64/neuron_to_neuron_exc_syn.o +0 -0
  64. wormsim/components/mechanism/x86_64/neuron_to_neuron_inh_syn.c +572 -0
  65. wormsim/components/mechanism/x86_64/neuron_to_neuron_inh_syn.o +0 -0
  66. wormsim/components/mechanism/x86_64/shk1.c +616 -0
  67. wormsim/components/mechanism/x86_64/shk1.o +0 -0
  68. wormsim/components/mechanism/x86_64/shl1.c +676 -0
  69. wormsim/components/mechanism/x86_64/shl1.o +0 -0
  70. wormsim/components/mechanism/x86_64/slo1_egl19.c +820 -0
  71. wormsim/components/mechanism/x86_64/slo1_egl19.o +0 -0
  72. wormsim/components/mechanism/x86_64/slo1_unc2.c +777 -0
  73. wormsim/components/mechanism/x86_64/slo1_unc2.o +0 -0
  74. wormsim/components/mechanism/x86_64/slo2_egl19.c +820 -0
  75. wormsim/components/mechanism/x86_64/slo2_egl19.o +0 -0
  76. wormsim/components/mechanism/x86_64/slo2_unc2.c +775 -0
  77. wormsim/components/mechanism/x86_64/slo2_unc2.o +0 -0
  78. wormsim/components/mechanism/x86_64/special +17 -0
  79. wormsim/components/mechanism/x86_64/unc2.c +636 -0
  80. wormsim/components/mechanism/x86_64/unc2.o +0 -0
  81. wormsim/components/model/ADAL.hoc +135 -0
  82. wormsim/components/model/ADAR.hoc +135 -0
  83. wormsim/components/model/ADEL.hoc +183 -0
  84. wormsim/components/model/ADER.hoc +183 -0
  85. wormsim/components/model/ADFL.hoc +164 -0
  86. wormsim/components/model/ADFR.hoc +164 -0
  87. wormsim/components/model/ADLL.hoc +185 -0
  88. wormsim/components/model/ADLR.hoc +185 -0
  89. wormsim/components/model/AFDL.hoc +164 -0
  90. wormsim/components/model/AFDR.hoc +164 -0
  91. wormsim/components/model/AIAL.hoc +129 -0
  92. wormsim/components/model/AIAR.hoc +129 -0
  93. wormsim/components/model/AIBL.hoc +147 -0
  94. wormsim/components/model/AIBR.hoc +147 -0
  95. wormsim/components/model/AIML.hoc +130 -0
  96. wormsim/components/model/AIMR.hoc +130 -0
  97. wormsim/components/model/AINL.hoc +157 -0
  98. wormsim/components/model/AINR.hoc +157 -0
  99. wormsim/components/model/AIYL.hoc +129 -0
  100. wormsim/components/model/AIYR.hoc +129 -0
  101. wormsim/components/model/AIZL.hoc +137 -0
  102. wormsim/components/model/AIZR.hoc +137 -0
  103. wormsim/components/model/ALA.hoc +148 -0
  104. wormsim/components/model/ALML.hoc +203 -0
  105. wormsim/components/model/ALMR.hoc +203 -0
  106. wormsim/components/model/ALNL.hoc +175 -0
  107. wormsim/components/model/ALNR.hoc +175 -0
  108. wormsim/components/model/AQR.hoc +187 -0
  109. wormsim/components/model/AS01.hoc +151 -0
  110. wormsim/components/model/AS02.hoc +152 -0
  111. wormsim/components/model/AS03.hoc +151 -0
  112. wormsim/components/model/AS04.hoc +154 -0
  113. wormsim/components/model/AS05.hoc +155 -0
  114. wormsim/components/model/AS06.hoc +153 -0
  115. wormsim/components/model/AS07.hoc +156 -0
  116. wormsim/components/model/AS08.hoc +158 -0
  117. wormsim/components/model/AS09.hoc +154 -0
  118. wormsim/components/model/AS10.hoc +153 -0
  119. wormsim/components/model/AS11.hoc +154 -0
  120. wormsim/components/model/ASEL.hoc +173 -0
  121. wormsim/components/model/ASER.hoc +173 -0
  122. wormsim/components/model/ASGL.hoc +160 -0
  123. wormsim/components/model/ASGR.hoc +160 -0
  124. wormsim/components/model/ASHL.hoc +165 -0
  125. wormsim/components/model/ASHR.hoc +165 -0
  126. wormsim/components/model/ASIL.hoc +168 -0
  127. wormsim/components/model/ASIR.hoc +168 -0
  128. wormsim/components/model/ASJL.hoc +167 -0
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  130. wormsim/components/model/ASKL.hoc +165 -0
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  132. wormsim/components/model/AUAL.hoc +164 -0
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  134. wormsim/components/model/AVAL.hoc +197 -0
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  146. wormsim/components/model/AVHR.hoc +172 -0
  147. wormsim/components/model/AVJL.hoc +173 -0
  148. wormsim/components/model/AVJR.hoc +172 -0
  149. wormsim/components/model/AVKL.hoc +204 -0
  150. wormsim/components/model/AVKR.hoc +204 -0
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  152. wormsim/components/model/AVM.hoc +203 -0
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  157. wormsim/components/model/AWCL.hoc +168 -0
  158. wormsim/components/model/AWCR.hoc +168 -0
  159. wormsim/components/model/BAGL.hoc +160 -0
  160. wormsim/components/model/BAGR.hoc +160 -0
  161. wormsim/components/model/BDUL.hoc +136 -0
  162. wormsim/components/model/BDUR.hoc +136 -0
  163. wormsim/components/model/CANL.hoc +165 -0
  164. wormsim/components/model/CANR.hoc +165 -0
  165. wormsim/components/model/CEPDL.hoc +182 -0
  166. wormsim/components/model/CEPDR.hoc +182 -0
  167. wormsim/components/model/CEPVL.hoc +179 -0
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  169. wormsim/components/model/DA01.hoc +177 -0
  170. wormsim/components/model/DA02.hoc +180 -0
  171. wormsim/components/model/DA03.hoc +160 -0
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  173. wormsim/components/model/DA05.hoc +176 -0
  174. wormsim/components/model/DA06.hoc +187 -0
  175. wormsim/components/model/DA07.hoc +175 -0
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  178. wormsim/components/model/DB01.hoc +193 -0
  179. wormsim/components/model/DB02.hoc +184 -0
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  185. wormsim/components/model/DD01.hoc +180 -0
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  194. wormsim/components/model/FLPL.hoc +261 -0
  195. wormsim/components/model/FLPR.hoc +261 -0
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  730. wormsim/components/param/cell/URADL.json +30 -0
  731. wormsim/components/param/cell/URADR.json +30 -0
  732. wormsim/components/param/cell/URAVL.json +30 -0
  733. wormsim/components/param/cell/URAVR.json +30 -0
  734. wormsim/components/param/cell/URBL.json +30 -0
  735. wormsim/components/param/cell/URBR.json +30 -0
  736. wormsim/components/param/cell/URXL.json +30 -0
  737. wormsim/components/param/cell/URXR.json +30 -0
  738. wormsim/components/param/cell/URYDL.json +30 -0
  739. wormsim/components/param/cell/URYDR.json +30 -0
  740. wormsim/components/param/cell/URYVL.json +30 -0
  741. wormsim/components/param/cell/URYVR.json +30 -0
  742. wormsim/components/param/cell/VA01.json +30 -0
  743. wormsim/components/param/cell/VA02.json +30 -0
  744. wormsim/components/param/cell/VA03.json +30 -0
  745. wormsim/components/param/cell/VA04.json +30 -0
  746. wormsim/components/param/cell/VA05.json +30 -0
  747. wormsim/components/param/cell/VA06.json +30 -0
  748. wormsim/components/param/cell/VA07.json +30 -0
  749. wormsim/components/param/cell/VA08.json +30 -0
  750. wormsim/components/param/cell/VA09.json +30 -0
  751. wormsim/components/param/cell/VA10.json +30 -0
  752. wormsim/components/param/cell/VA11.json +30 -0
  753. wormsim/components/param/cell/VA12.json +30 -0
  754. wormsim/components/param/cell/VB01.json +30 -0
  755. wormsim/components/param/cell/VB02.json +30 -0
  756. wormsim/components/param/cell/VB03.json +30 -0
  757. wormsim/components/param/cell/VB04.json +30 -0
  758. wormsim/components/param/cell/VB05.json +30 -0
  759. wormsim/components/param/cell/VB06.json +30 -0
  760. wormsim/components/param/cell/VB07.json +30 -0
  761. wormsim/components/param/cell/VB08.json +30 -0
  762. wormsim/components/param/cell/VB09.json +30 -0
  763. wormsim/components/param/cell/VB10.json +30 -0
  764. wormsim/components/param/cell/VB11.json +30 -0
  765. wormsim/components/param/cell/VC01.json +30 -0
  766. wormsim/components/param/cell/VC02.json +30 -0
  767. wormsim/components/param/cell/VC03.json +30 -0
  768. wormsim/components/param/cell/VC04.json +30 -0
  769. wormsim/components/param/cell/VC05.json +30 -0
  770. wormsim/components/param/cell/VC06.json +30 -0
  771. wormsim/components/param/cell/VD01.json +30 -0
  772. wormsim/components/param/cell/VD02.json +30 -0
  773. wormsim/components/param/cell/VD03.json +30 -0
  774. wormsim/components/param/cell/VD04.json +30 -0
  775. wormsim/components/param/cell/VD05.json +30 -0
  776. wormsim/components/param/cell/VD06.json +30 -0
  777. wormsim/components/param/cell/VD07.json +30 -0
  778. wormsim/components/param/cell/VD08.json +30 -0
  779. wormsim/components/param/cell/VD09.json +30 -0
  780. wormsim/components/param/cell/VD10.json +30 -0
  781. wormsim/components/param/cell/VD11.json +30 -0
  782. wormsim/components/param/cell/VD12.json +30 -0
  783. wormsim/components/param/cell/VD13.json +30 -0
  784. wormsim/components/param/cell/__init__.py +0 -0
  785. wormsim/components/param/cell/template.json +30 -0
  786. wormsim/components/param/connection/SI5-302-RIA.xlsx +0 -0
  787. wormsim/components/param/connection/SI5-302.xlsx +0 -0
  788. wormsim/components/param/connection/__init__.py +0 -0
  789. wormsim/components/param/connection/muscle_neuron.xlsx +0 -0
  790. wormsim/components/param/connection/neuron_muscle.xlsx +0 -0
  791. wormsim/config.json +682 -0
  792. wormsim/simulate.py +660 -0
  793. wormsim-0.0.1.dist-info/METADATA +7 -0
  794. wormsim-0.0.1.dist-info/RECORD +796 -0
  795. wormsim-0.0.1.dist-info/WHEEL +5 -0
  796. wormsim-0.0.1.dist-info/top_level.txt +1 -0
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wormsim/components/param/cell/MCDR12.json ADDED
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wormsim/components/param/cell/MCDR13.json ADDED
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wormsim/components/param/cell/MCDR14.json ADDED
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wormsim/components/param/cell/MCDR16.json ADDED
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wormsim/components/param/cell/MCDR23.json ADDED
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wormsim/components/param/cell/MCDR24.json ADDED
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wormsim/components/param/cell/MCL.json ADDED
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wormsim/components/param/cell/MCR.json ADDED
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wormsim/components/param/cell/MCVL01.json ADDED
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wormsim/components/param/cell/MCVL02.json ADDED
@@ -0,0 +1,25 @@
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wormsim/components/param/cell/MCVL03.json ADDED
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wormsim/components/param/cell/MCVL04.json ADDED
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wormsim/components/param/cell/MCVL05.json ADDED
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wormsim/components/param/cell/MCVL06.json ADDED
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wormsim/components/param/cell/MCVL07.json ADDED
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wormsim/components/param/cell/MCVL08.json ADDED
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wormsim/components/param/cell/MCVL09.json ADDED
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