waveorder 2.2.1b0__py3-none-any.whl → 3.0.0__py3-none-any.whl

This diff represents the content of publicly available package versions that have been released to one of the supported registries. The information contained in this diff is provided for informational purposes only and reflects changes between package versions as they appear in their respective public registries.
Files changed (58) hide show
  1. waveorder/_version.py +16 -3
  2. waveorder/acq/__init__.py +0 -0
  3. waveorder/acq/acq_functions.py +166 -0
  4. waveorder/assets/HSV_legend.png +0 -0
  5. waveorder/assets/JCh_legend.png +0 -0
  6. waveorder/assets/waveorder_plugin_logo.png +0 -0
  7. waveorder/calib/Calibration.py +1512 -0
  8. waveorder/calib/Optimization.py +470 -0
  9. waveorder/calib/__init__.py +0 -0
  10. waveorder/calib/calibration_workers.py +464 -0
  11. waveorder/cli/apply_inverse_models.py +328 -0
  12. waveorder/cli/apply_inverse_transfer_function.py +379 -0
  13. waveorder/cli/compute_transfer_function.py +432 -0
  14. waveorder/cli/gui_widget.py +58 -0
  15. waveorder/cli/main.py +39 -0
  16. waveorder/cli/monitor.py +163 -0
  17. waveorder/cli/option_eat_all.py +47 -0
  18. waveorder/cli/parsing.py +122 -0
  19. waveorder/cli/printing.py +16 -0
  20. waveorder/cli/reconstruct.py +67 -0
  21. waveorder/cli/settings.py +187 -0
  22. waveorder/cli/utils.py +175 -0
  23. waveorder/filter.py +1 -2
  24. waveorder/focus.py +136 -25
  25. waveorder/io/__init__.py +0 -0
  26. waveorder/io/_reader.py +61 -0
  27. waveorder/io/core_functions.py +272 -0
  28. waveorder/io/metadata_reader.py +195 -0
  29. waveorder/io/utils.py +175 -0
  30. waveorder/io/visualization.py +160 -0
  31. waveorder/models/inplane_oriented_thick_pol3d_vector.py +3 -3
  32. waveorder/models/isotropic_fluorescent_thick_3d.py +92 -0
  33. waveorder/models/isotropic_fluorescent_thin_3d.py +331 -0
  34. waveorder/models/isotropic_thin_3d.py +73 -72
  35. waveorder/models/phase_thick_3d.py +103 -4
  36. waveorder/napari.yaml +36 -0
  37. waveorder/plugin/__init__.py +9 -0
  38. waveorder/plugin/gui.py +1094 -0
  39. waveorder/plugin/gui.ui +1440 -0
  40. waveorder/plugin/job_manager.py +42 -0
  41. waveorder/plugin/main_widget.py +1605 -0
  42. waveorder/plugin/tab_recon.py +3294 -0
  43. waveorder/scripts/__init__.py +0 -0
  44. waveorder/scripts/launch_napari.py +13 -0
  45. waveorder/scripts/repeat-cal-acq-rec.py +147 -0
  46. waveorder/scripts/repeat-calibration.py +31 -0
  47. waveorder/scripts/samples.py +85 -0
  48. waveorder/scripts/simulate_zarr_acq.py +204 -0
  49. waveorder/util.py +1 -1
  50. waveorder/visuals/napari_visuals.py +1 -1
  51. waveorder-3.0.0.dist-info/METADATA +350 -0
  52. waveorder-3.0.0.dist-info/RECORD +69 -0
  53. {waveorder-2.2.1b0.dist-info → waveorder-3.0.0.dist-info}/WHEEL +1 -1
  54. waveorder-3.0.0.dist-info/entry_points.txt +5 -0
  55. {waveorder-2.2.1b0.dist-info → waveorder-3.0.0.dist-info/licenses}/LICENSE +13 -1
  56. waveorder-2.2.1b0.dist-info/METADATA +0 -187
  57. waveorder-2.2.1b0.dist-info/RECORD +0 -27
  58. {waveorder-2.2.1b0.dist-info → waveorder-3.0.0.dist-info}/top_level.txt +0 -0
waveorder-2.2.1b0.dist-info/RECORD DELETED
@@ -1,27 +0,0 @@
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- waveorder/__init__.py,sha256=47DEQpj8HBSa-_TImW-5JCeuQeRkm5NMpJWZG3hSuFU,0
2
- waveorder/_version.py,sha256=GmZKo0FXy1i2hmm_Tns9LgX3RbtJXrUCizylCrNMoI4,513
3
- waveorder/background_estimator.py,sha256=GFy3N0qqp5M6JVZBbIUvTYhSin8Njg7zA2WN69pKLAE,12398
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- waveorder/correction.py,sha256=uAWDKXq-FYwi1obxxWq0A-suNVf1cvqUnPsDC-LIlsM,3460
5
- waveorder/filter.py,sha256=BSNYTMYy-HrqtupcXMm9OzWPMlX_NF7KSNjeN0-0ghQ,7350
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- waveorder/focus.py,sha256=ELI-bhtoodSFL7mKlXt0S8HqCc02gJMr7gCl3kYW5bE,6314
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- waveorder/optics.py,sha256=RikR3kkPFoVUS86jiGQZey7Jtz5Ga-xKWnXsexo3Okc,44242
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- waveorder/reconstruct.py,sha256=nF00-uxYF67QVcNClp1VIB31ElUfbjO3RNxbxc0ELH4,832
9
- waveorder/sampling.py,sha256=OAqlfjEemX6tQV2a2S8X0wQx9JCSykcvVxvKr1CY3H0,2521
10
- waveorder/stokes.py,sha256=G_hcqS-GbslVnCWmS13y77K1YZ8cvwIl-DDKyC84LSI,15184
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- waveorder/util.py,sha256=K5wdR_da1MYSVHUSp0O-m_FzMKRX60_KXCv3IXtCgKA,71243
12
- waveorder/waveorder_reconstructor.py,sha256=-MluWmnZnCZm7Xu-8V8QWX9ma0_5oAZO2Xlyrg1bRes,152072
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- waveorder/waveorder_simulator.py,sha256=uRRX_wcWzJzlVcfToLpIlh4e8Xt9NjTvdonyGEf2Z1c,45805
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- waveorder/models/inplane_oriented_thick_pol3d.py,sha256=bx5yViNz7wY5BBXUea1Tw0RhYsEzErENRnAbgpa34C0,5992
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- waveorder/models/inplane_oriented_thick_pol3d_vector.py,sha256=tAHkIV02CZ1DbjvikKON2bvkrRfR6jEiUenDhrTtdtI,9754
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- waveorder/models/isotropic_fluorescent_thick_3d.py,sha256=mrai8u3aQ9TxI_TZZXFXZWei6g_ZcxkLxjlUDv1rHJA,7050
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- waveorder/models/isotropic_thin_3d.py,sha256=ADn1py_-bkXKD9_Uw4av1xE-X-Y6Wyp3uSdaA9C7JPU,10956
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- waveorder/models/phase_thick_3d.py,sha256=sOHphv6_SfarLxrhj4bcZwM-5bdjXS4-j6RCreOBTmA,8654
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- waveorder/visuals/jupyter_visuals.py,sha256=6kxICjEtP1qc1EuETc_NJ6Y4A7nVaC-bP3wl_CQNPfg,58096
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- waveorder/visuals/matplotlib_visuals.py,sha256=v1zi0ZlXEV5CcpNzTWL0vDJ2Md2-RSHnc3rAB61wimg,10915
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- waveorder/visuals/napari_visuals.py,sha256=jgyKRlWqJv1PvCRWfpgqRUv6rwIsI4AXQGLL5IftPnM,2352
22
- waveorder/visuals/utils.py,sha256=QC5WSc2yzPMjk66IjA39iNFgO_0It6evma201hH8Lg4,1001
23
- waveorder-2.2.1b0.dist-info/LICENSE,sha256=auz4oGH1A-xZtoiR2zuXIk-Hii4v9aGgFVBqn7nfpms,1509
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- waveorder-2.2.1b0.dist-info/METADATA,sha256=ZFf0LKaV4-RlN6AkT9K6_BzLqqG72i9wRPQDc9bscms,9724
25
- waveorder-2.2.1b0.dist-info/WHEEL,sha256=52BFRY2Up02UkjOa29eZOS2VxUrpPORXg1pkohGGUS8,91
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- waveorder-2.2.1b0.dist-info/top_level.txt,sha256=i3zReXiiMTnyPk93W7aEz_oEfsLnfR_Kzl7PW7kUslA,10
27
- waveorder-2.2.1b0.dist-info/RECORD,,