tsadmetrics 0.1.3__py3-none-any.whl → 0.1.5__py3-none-any.whl

experiments/scripts/metro_experiment.py

@@ -0,0 +1,133 @@
+import pandas as pd
+import numpy as np
+import matplotlib.pyplot as plt
+import seaborn as sns
+import tsadmetrics as tm
+import time
+from sklearn.metrics import f1_score
+
+from sklearn.model_selection import train_test_split
+from sklearn.preprocessing import MinMaxScaler
+
+
+df_analog  = pd.read_csv('../preprocessed_data/MetroPT3_analogic.csv')
+df_analog = pd.DataFrame(df_analog).set_index('timestamp')
+
+# Separar las características (X) y la variable objetivo (y)
+X = df_analog.drop(columns='anomaly')  # Características
+y = df_analog['anomaly']  # Variable objetivo
+
+# Normalizar las características entre [0, 1]
+scaler = MinMaxScaler(feature_range=(0, 1))
+X_normalized = scaler.fit_transform(X)
+
+# Convertir el resultado normalizado de nuevo a un DataFrame
+X_normalized = pd.DataFrame(X_normalized, columns=X.columns, index=X.index)
+
+# Dividir el conjunto de datos normalizado en entrenamiento y prueba
+train_df_analog, test_df_analog = train_test_split(
+    X_normalized.join(y),  # Unir las características normalizadas con la variable objetivo
+    test_size=0.4,
+    random_state=42
+)
+
+X_train_analog = train_df_analog.drop(columns='anomaly')
+y_train_analog = train_df_analog['anomaly']
+X_test_analog = test_df_analog.drop(columns='anomaly')
+y_test_analog = test_df_analog['anomaly']
+
+
+#Modelos basados en distancia
+from pyod.models.lof import LOF
+from pyod.models.cblof import CBLOF
+from pyod.models.knn import KNN
+from pyod.models.abod import ABOD
+
+modelos_distancia = [
+    LOF(n_neighbors=35, contamination=np.sum(y_train_analog)/len(y_train_analog), n_jobs=-1),
+    #COF(contamination=np.sum(y_train_analog)/len(y_train_analog),method='memory'),
+    CBLOF(contamination=np.sum(y_train_analog)/len(y_train_analog),n_jobs=-1),
+    KNN(n_neighbors=35, contamination=np.sum(y_train_analog)/len(y_train_analog),n_jobs=-1),
+    ABOD(contamination=np.sum(y_train_analog)/len(y_train_analog))
+]
+
+#Modelos basados en árboles de aislamiento
+from pyod.models.iforest import IForest
+modelos_arboles = [
+    IForest(contamination=np.sum(y_train_analog)/len(y_train_analog),n_jobs=-1, random_state=42)
+]
+
+#Modelos basados en Reconstrucción
+from pyod.models.ae1svm import AE1SVM
+from pyod.models.alad import ALAD
+from pyod.models.auto_encoder import AutoEncoder
+
+modelos_reconstruccion = [
+    AE1SVM(contamination=np.sum(y_train_analog)/len(y_train_analog)),
+    ALAD(contamination=np.sum(y_train_analog)/len(y_train_analog)),
+    AutoEncoder(contamination=np.sum(y_train_analog)/len(y_train_analog))
+]
+
+
+
+#ejecucion de los modelos
+
+distancia_results = pd.DataFrame(columns=['nombre_modelo', 'f1_score', 'segment_wise_f_score', 'tiempo_entrenamiento'])
+for modelo in modelos_distancia:
+
+    nombre_modelo = modelo.__class__.__name__
+
+    inicio = time.time()
+    try:
+        modelo.fit(X_train_analog)
+        t = time.time() - inicio  
+        y_pred = modelo.predict(X_test_analog)
+        f1 = f1_score(y_test_analog, y_pred)
+        sw_f1 = tm.segment_wise_f_score(y_test_analog, y_pred)
+        print(f'Modelo: {nombre_modelo} - F1: {f1} - Segment-wise F1: {sw_f1} - Tiempo: {t}')
+    except Exception as e:
+            print(f'Error en el modelo {nombre_modelo}: {e}')
+    # Añadir los resultados al DataFrame
+    distancia_results.loc[len(distancia_results)] = [nombre_modelo, f1, sw_f1, t] 
+
+distancia_results.to_csv('../results/distancia_results.csv')
+
+arbol_results = pd.DataFrame(columns=['nombre_modelo', 'f1_score', 'segment_wise_f_score', 'tiempo_entrenamiento'])
+for modelo in modelos_arboles:
+
+    nombre_modelo = modelo.__class__.__name__
+
+    inicio = time.time()
+    try:
+        modelo.fit(X_train_analog)
+        t = time.time() - inicio  
+        y_pred = modelo.predict(X_test_analog)
+        f1 = f1_score(y_test_analog, y_pred)
+        sw_f1 = tm.segment_wise_f_score(y_test_analog, y_pred)
+        print(f'Modelo: {nombre_modelo} - F1: {f1} - Segment-wise F1: {sw_f1} - Tiempo: {t}')
+    except Exception as e:
+            print(f'Error en el modelo {nombre_modelo}: {e}')
+    # Añadir los resultados al DataFrame
+    arbol_results.loc[len(arbol_results)] = [nombre_modelo, f1, sw_f1, t]
+
+arbol_results.to_csv('../results/arbol_results.csv')
+
+reconstruccion_results = pd.DataFrame(columns=['nombre_modelo', 'f1_score', 'segment_wise_f_score', 'tiempo_entrenamiento'])
+for modelo in modelos_reconstruccion:
+
+    nombre_modelo = modelo.__class__.__name__
+
+    inicio = time.time()
+    try:
+        modelo.fit(X_train_analog[y_train_analog == 0])
+        t = time.time() - inicio  
+        y_pred = modelo.predict(X_test_analog)
+        f1 = f1_score(y_test_analog, y_pred)
+        sw_f1 = tm.segment_wise_f_score(y_test_analog, y_pred)
+        print(f'Modelo: {nombre_modelo} - F1: {f1} - Segment-wise F1: {sw_f1} - Tiempo: {t}')
+    except Exception as e:
+            print(f'Error en el modelo {nombre_modelo}: {e}')
+    # Añadir los resultados al DataFrame
+    reconstruccion_results.loc[len(reconstruccion_results)] = [nombre_modelo, f1, sw_f1, t]
+
+reconstruccion_results.to_csv('../results/reconstruccion_results.csv')

experiments/scripts/opt_metro_experiment.py

@@ -0,0 +1,343 @@
+import pandas as pd
+import numpy as np
+import matplotlib.pyplot as plt
+import seaborn as sns
+import tsadmetrics as tm
+import time
+from sklearn.metrics import f1_score, recall_score, precision_score
+import optuna
+from optuna.samplers import TPESampler
+from functools import partial
+import warnings
+warnings.filterwarnings('ignore')
+from sklearn.model_selection import train_test_split
+from sklearn.preprocessing import MinMaxScaler
+import os
+import json
+import torch
+import torch.nn as nn
+from torch.utils.data import DataLoader, TensorDataset
+from sklearn.metrics import classification_report
+
+def simplify_dataset(
+    data: pd.DataFrame,
+    window_size: int = 2,
+    time_col: str = None,
+    anomaly_col: str = 'anomaly',
+    agg_func: str = 'mean'
+) -> pd.DataFrame:
+    """
+    Reduce un dataset aplicando agregación en ventanas temporales.
+    """
+    simplified_data = data.rolling(window_size, step=window_size).mean()
+    simplified_data = simplified_data.dropna()
+    simplified_data[anomaly_col] = (simplified_data[anomaly_col] > 0.1).astype(int)
+    return simplified_data.reset_index(drop=True)
+
+# Configuración inicial para PyTorch
+device = torch.device("cuda" if torch.cuda.is_available() else "cpu")
+print(f"Using device: {device}")
+
+def guardar_prediccion(modelo_nombre, y_true, y_pred_binario, y_pred_continuo=None, timestamps=None):
+    """
+    Guarda las predicciones ordenadas por timestamp.
+    """
+    os.makedirs('../results/predictions', exist_ok=True)
+    
+    resultados = pd.DataFrame({
+        'timestamp': timestamps if timestamps is not None else np.arange(len(y_true)),
+        'ground_truth': np.array(y_true).flatten(),
+        'prediction_binary': np.array(y_pred_binario).flatten()
+    })
+    
+    if y_pred_continuo is not None:
+        resultados['prediction_continuous'] = np.array(y_pred_continuo).flatten()
+    
+    if 'timestamp' in resultados.columns:
+        resultados = resultados.sort_values('timestamp')
+    
+    nombre_archivo = f'../results/predictions/{modelo_nombre}_pred.csv'
+    resultados.to_csv(nombre_archivo, index=False)
+    return nombre_archivo
+
+# -------------------------------
+# Cargar y preparar datos
+df_analog = pd.read_csv('../preprocessed_data/MetroPT3_analogic.csv')
+df_analog = pd.DataFrame(df_analog).set_index('timestamp')
+df_analog = df_analog.sort_index()
+
+# Reducción de tamaño
+print('Tamaño inicial del dataset:', df_analog.shape)
+print(f'Proporción de anomalías: {df_analog["anomaly"].mean():.2f}')
+df_analog = simplify_dataset(df_analog, window_size=10, time_col='timestamp')
+print('Tamaño del dataset:', df_analog.shape)
+print(f'Proporción de anomalías: {df_analog["anomaly"].mean():.2f}')
+
+# Separar y normalizar datos
+X = df_analog.drop(columns='anomaly')
+y = df_analog['anomaly']
+scaler = MinMaxScaler(feature_range=(0, 1))
+X_normalized = scaler.fit_transform(X)
+X_normalized = pd.DataFrame(X_normalized, columns=X.columns, index=X.index)
+
+# -------------------------------
+# DIVISIÓN DE DATOS
+# 1. Para modelos no-LSTM (shuffle=True)
+train_df_shuf, test_df_shuf = train_test_split(
+    X_normalized.join(y),
+    test_size=0.4,
+    random_state=42,
+    shuffle=True
+)
+
+# 2. Para LSTM (shuffle=False para mantener orden temporal)
+train_df_noshuf, test_df_noshuf = train_test_split(
+    X_normalized.join(y),
+    test_size=0.4,
+    random_state=42,
+    shuffle=False
+)
+
+# Preparar datos para modelos no-LSTM
+X_train_shuf = train_df_shuf.drop(columns='anomaly')
+y_train_shuf = train_df_shuf['anomaly']
+X_test_shuf = test_df_shuf.drop(columns='anomaly')
+y_test_shuf = test_df_shuf['anomaly']
+
+# Preparar datos para LSTM
+X_train_noshuf = train_df_noshuf.drop(columns='anomaly')
+y_train_noshuf = train_df_noshuf['anomaly']
+X_test_noshuf = test_df_noshuf.drop(columns='anomaly')
+y_test_noshuf = test_df_noshuf['anomaly']
+
+contamination = np.sum(y_train_shuf)/len(y_train_shuf)
+
+# -------------------------------
+# Definición del modelo LSTM
+class AnomalyLSTM(nn.Module):
+    def __init__(self, input_size, hidden_size=64, num_layers=2, dropout=0.2):
+        super(AnomalyLSTM, self).__init__()
+        self.lstm = nn.LSTM(
+            input_size=input_size,
+            hidden_size=hidden_size,
+            num_layers=num_layers,
+            batch_first=True,
+            dropout=dropout if num_layers > 1 else 0
+        )
+        self.fc = nn.Linear(hidden_size, 1)
+        self.sigmoid = nn.Sigmoid()
+        
+    def forward(self, x):
+        lstm_out, _ = self.lstm(x)
+        last_time_step = lstm_out[:, -1, :]
+        output = self.fc(last_time_step)
+        return self.sigmoid(output)
+
+def train_lstm(X_train, y_train, X_test, y_test, timestamps_test, sequence_length=10, epochs=20, batch_size=16):
+    # Preparar datos secuenciales
+    def create_sequences(data, targets, seq_length):
+        xs, ys = [], []
+        for i in range(len(data)-seq_length):
+            xs.append(data[i:(i+seq_length)])
+            ys.append(targets[i+seq_length])
+        return np.array(xs), np.array(ys)
+    
+    X_train_seq, y_train_seq = create_sequences(X_train.values, y_train.values, sequence_length)
+    X_test_seq, y_test_seq = create_sequences(X_test.values, y_test.values, sequence_length)
+    
+    # Convertir a tensores PyTorch
+    train_data = TensorDataset(
+        torch.FloatTensor(X_train_seq), 
+        torch.FloatTensor(y_train_seq).unsqueeze(1)
+    )
+    test_data = TensorDataset(
+        torch.FloatTensor(X_test_seq), 
+        torch.FloatTensor(y_test_seq).unsqueeze(1)
+    )
+    
+    # IMPORTANTE: shuffle=False para DataLoader
+    train_loader = DataLoader(train_data, batch_size=batch_size, shuffle=False)
+    test_loader = DataLoader(test_data, batch_size=batch_size, shuffle=False)
+    
+    # Inicializar modelo
+    model = AnomalyLSTM(input_size=X_train.shape[1]).to(device)
+    criterion = nn.BCELoss()
+    optimizer = torch.optim.Adam(model.parameters(), lr=0.001)
+    
+    # Entrenamiento
+    train_start = time.time()
+    for epoch in range(epochs):
+        model.train()
+        for batch_x, batch_y in train_loader:
+            batch_x, batch_y = batch_x.to(device), batch_y.to(device)
+            optimizer.zero_grad()
+            outputs = model(batch_x)
+            loss = criterion(outputs, batch_y)
+            loss.backward()
+            optimizer.step()
+    
+    # Evaluación
+    model.eval()
+    test_preds, test_true, test_scores = [], [], []
+    with torch.no_grad():
+        for batch_x, batch_y in test_loader:
+            batch_x, batch_y = batch_x.to(device), batch_y.to(device)
+            outputs = model(batch_x)
+            predicted = (outputs > 0.5).float()
+            test_preds.extend(predicted.cpu().numpy())
+            test_scores.extend(outputs.cpu().numpy())
+            test_true.extend(batch_y.cpu().numpy())
+    
+    train_time = time.time() - train_start
+    
+    # Ajustar predicciones al tamaño original y ordenar por timestamp
+    full_preds = np.concatenate([np.zeros(sequence_length), np.array(test_preds).flatten()])
+    full_scores = np.concatenate([np.zeros(sequence_length), np.array(test_scores).flatten()])
+    full_preds = full_preds[:len(y_test)]
+    full_scores = full_scores[:len(y_test)]
+    
+    # Crear DataFrame con timestamps para ordenar
+    pred_df = pd.DataFrame({
+        'timestamp': timestamps_test[-len(full_preds):],
+        'y_true': y_test[-len(full_preds):],
+        'y_pred': full_preds,
+        'y_scores': full_scores
+    }).sort_values('timestamp')
+    
+    # Calcular métricas ordenadas
+    f1 = f1_score(pred_df['y_true'], pred_df['y_pred'])
+    sw_f1 = tm.segment_wise_f_score(pred_df['y_true'], pred_df['y_pred'])
+    
+    guardar_prediccion("LSTM", pred_df['y_true'], pred_df['y_pred'], pred_df['y_scores'], pred_df['timestamp'])
+    
+    return model, f1, sw_f1, train_time, pred_df['y_pred']
+
+# [Resto de las funciones (objective, optimize_model, evaluate_models) permanecen iguales...]
+
+# -------------------------------
+# Modelos
+from pyod.models.lof import LOF
+from pyod.models.cblof import CBLOF
+from pyod.models.knn import KNN
+from pyod.models.iforest import IForest
+from pyod.models.ae1svm import AE1SVM
+from pyod.models.auto_encoder import AutoEncoder
+
+modelos_distancia = [LOF, CBLOF, KNN]
+modelos_arboles = [IForest]
+modelos_machine_learning = []
+modelos_reconstruccion = [AE1SVM, AutoEncoder]
+
+# -------------------------------
+# Función evaluate_models modificada
+# -------------------------------
+# Función evaluate_models modificada para ordenar todas las predicciones
+def evaluate_models(model_classes, best_params_dict, results_filename, include_lstm=False):
+    results_df = pd.DataFrame(columns=[
+        'nombre_modelo', 'f1_score', 'segment_wise_f_score', 'tiempo_entrenamiento', 'best_params'
+    ])
+    
+    # Evaluar modelos no-LSTM (usando datos con shuffle)
+    for model_class in model_classes:
+        nombre_modelo = model_class.__name__
+        params = best_params_dict.get(nombre_modelo, {})
+        params['contamination'] = contamination
+        
+        if model_class.__name__ in ['LOF', 'CBLOF', 'KNN', 'IForest']:
+            params['n_jobs'] = -1
+        
+        inicio = time.time()
+        try:
+            model = model_class(**params)
+            
+            if nombre_modelo in ['AutoEncoder', 'AE1SVM']:
+                model.fit(X_train_shuf[y_train_shuf == 0])
+            else:
+                model.fit(X_train_shuf)
+                
+            t = time.time() - inicio
+            y_pred = model.predict(X_test_shuf)
+            y_scores = model.decision_function(X_test_shuf) if hasattr(model, 'decision_function') else None
+            
+            # Crear DataFrame temporal con timestamps para ordenar
+            pred_df = pd.DataFrame({
+                'timestamp': X_test_shuf.index,
+                'y_true': y_test_shuf,
+                'y_pred': y_pred,
+                'y_scores': y_scores if y_scores is not None else np.nan
+            }).sort_values('timestamp')
+            
+            # Calcular métricas sobre datos ordenados
+            f1 = f1_score(pred_df['y_true'], pred_df['y_pred'])
+            sw_f1 = tm.segment_wise_f_score(pred_df['y_true'], pred_df['y_pred'])
+            
+            # Guardar predicciones ordenadas
+            guardar_prediccion(
+                nombre_modelo, 
+                pred_df['y_true'], 
+                pred_df['y_pred'], 
+                pred_df['y_scores'] if 'y_scores' in pred_df.columns else None,
+                pred_df['timestamp']
+            )
+            
+            print(f'Modelo: {nombre_modelo} - F1: {f1:.4f} - Segment-wise F1: {sw_f1:.4f} - Tiempo: {t:.2f}s')
+            
+            results_df.loc[len(results_df)] = [
+                nombre_modelo, f1, sw_f1, t, json.dumps(params, ensure_ascii=False)
+            ]
+        except Exception as e:
+            print(f'Error en el modelo {nombre_modelo}: {e}')
+    
+    # Evaluar LSTM (usando datos sin shuffle)
+    if include_lstm:
+        inicio_lstm = time.time()
+        print("\nEntrenando modelo LSTM (sin shuffle)...")
+        
+        lstm_model, lstm_f1, lstm_sw_f1, lstm_time, lstm_preds = train_lstm(
+            X_train_noshuf, y_train_noshuf, 
+            X_test_noshuf, y_test_noshuf,
+            timestamps_test=X_test_noshuf.index
+        )
+        
+        print(f'Modelo: LSTM - F1: {lstm_f1:.4f} - Segment-wise F1: {lstm_sw_f1:.4f} - Tiempo: {lstm_time:.2f}s')
+        
+        results_df.loc[len(results_df)] = [
+            "LSTM", lstm_f1, lstm_sw_f1, lstm_time,
+            json.dumps({
+                "sequence_length": 10,
+                "epochs": 20,
+                "batch_size": 16,
+                "hidden_size": 64,
+                "num_layers": 2,
+                "dropout": 0.2
+            }, ensure_ascii=False)
+        ]
+    
+    # Guardar resultados
+    os.makedirs('../results', exist_ok=True)
+    results_df.to_csv(f'../results/{results_filename}', index=False)
+    print(f'Resultados guardados en {results_filename}')
+    return results_df
+
+# -------------------------------
+# Parámetros y ejecución
+best_params = {
+    'LOF': {"n_neighbors": 62, "metric":"minkowski", "contamination":contamination, "n_jobs":-1},
+    'CBLOF': {"n_clusters": 8, "alpha": 0.87571, "beta": 6, "contamination":contamination, "n_jobs":-1},
+    'KNN': {"n_neighbors": 5, "method":"mean", "contamination":contamination, "n_jobs":-1},
+    'IForest': {'n_jobs':-1, "contamination":contamination},
+    'AutoEncoder': {},
+    'AE1SVM': {}
+}
+
+print("\nEvaluando modelos basados en distancia...")
+distancia_results = evaluate_models(modelos_distancia, best_params, 'distancia_results.csv')
+
+print("\nEvaluando modelos basados en árboles...")
+arbol_results = evaluate_models(modelos_arboles, best_params, 'arbol_results.csv')
+
+print("\nEvaluando modelos de reconstrucción...")
+reconstruccion_results = evaluate_models(modelos_reconstruccion, best_params, 'reconstruccion_results.csv')
+
+print("\nEvaluando LSTM...")
+ml_results = evaluate_models(modelos_machine_learning, best_params, 'ml_results.csv', include_lstm=True)