tooluniverse 1.0.9.1__py3-none-any.whl → 1.0.11__py3-none-any.whl

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Files changed (191) hide show
  1. tooluniverse/__init__.py +57 -1
  2. tooluniverse/admetai_tool.py +1 -1
  3. tooluniverse/agentic_tool.py +65 -17
  4. tooluniverse/base_tool.py +19 -8
  5. tooluniverse/blast_tool.py +132 -0
  6. tooluniverse/boltz_tool.py +3 -3
  7. tooluniverse/cache/result_cache_manager.py +167 -12
  8. tooluniverse/cbioportal_tool.py +42 -0
  9. tooluniverse/clinvar_tool.py +268 -74
  10. tooluniverse/compose_scripts/drug_safety_analyzer.py +1 -1
  11. tooluniverse/compose_scripts/multi_agent_literature_search.py +1 -1
  12. tooluniverse/compose_scripts/output_summarizer.py +4 -4
  13. tooluniverse/compose_scripts/tool_discover.py +1941 -443
  14. tooluniverse/compose_scripts/tool_graph_composer.py +1 -1
  15. tooluniverse/compose_scripts/tool_metadata_generator.py +1 -1
  16. tooluniverse/compose_tool.py +9 -9
  17. tooluniverse/core_tool.py +2 -2
  18. tooluniverse/ctg_tool.py +4 -4
  19. tooluniverse/custom_tool.py +1 -1
  20. tooluniverse/data/agentic_tools.json +0 -370
  21. tooluniverse/data/alphafold_tools.json +6 -6
  22. tooluniverse/data/blast_tools.json +112 -0
  23. tooluniverse/data/cbioportal_tools.json +87 -0
  24. tooluniverse/data/clinvar_tools.json +235 -0
  25. tooluniverse/data/compose_tools.json +0 -89
  26. tooluniverse/data/dbsnp_tools.json +275 -0
  27. tooluniverse/data/emdb_tools.json +61 -0
  28. tooluniverse/data/ensembl_tools.json +259 -0
  29. tooluniverse/data/file_download_tools.json +275 -0
  30. tooluniverse/data/geo_tools.json +200 -48
  31. tooluniverse/data/gnomad_tools.json +109 -0
  32. tooluniverse/data/gtopdb_tools.json +68 -0
  33. tooluniverse/data/gwas_tools.json +32 -0
  34. tooluniverse/data/interpro_tools.json +199 -0
  35. tooluniverse/data/jaspar_tools.json +70 -0
  36. tooluniverse/data/kegg_tools.json +356 -0
  37. tooluniverse/data/mpd_tools.json +87 -0
  38. tooluniverse/data/ols_tools.json +314 -0
  39. tooluniverse/data/package_discovery_tools.json +64 -0
  40. tooluniverse/data/packages/categorized_tools.txt +0 -1
  41. tooluniverse/data/packages/machine_learning_tools.json +0 -47
  42. tooluniverse/data/paleobiology_tools.json +91 -0
  43. tooluniverse/data/pride_tools.json +62 -0
  44. tooluniverse/data/pypi_package_inspector_tools.json +158 -0
  45. tooluniverse/data/python_executor_tools.json +341 -0
  46. tooluniverse/data/regulomedb_tools.json +50 -0
  47. tooluniverse/data/remap_tools.json +89 -0
  48. tooluniverse/data/screen_tools.json +89 -0
  49. tooluniverse/data/tool_discovery_agents.json +428 -0
  50. tooluniverse/data/tool_discovery_agents.json.backup +1343 -0
  51. tooluniverse/data/uniprot_tools.json +77 -0
  52. tooluniverse/data/web_search_tools.json +250 -0
  53. tooluniverse/data/worms_tools.json +55 -0
  54. tooluniverse/dataset_tool.py +2 -2
  55. tooluniverse/dbsnp_tool.py +196 -58
  56. tooluniverse/default_config.py +36 -3
  57. tooluniverse/emdb_tool.py +30 -0
  58. tooluniverse/enrichr_tool.py +14 -14
  59. tooluniverse/ensembl_tool.py +140 -47
  60. tooluniverse/execute_function.py +594 -29
  61. tooluniverse/extended_hooks.py +4 -4
  62. tooluniverse/file_download_tool.py +269 -0
  63. tooluniverse/gene_ontology_tool.py +1 -1
  64. tooluniverse/generate_tools.py +3 -3
  65. tooluniverse/geo_tool.py +81 -28
  66. tooluniverse/gnomad_tool.py +100 -52
  67. tooluniverse/gtopdb_tool.py +41 -0
  68. tooluniverse/humanbase_tool.py +10 -10
  69. tooluniverse/interpro_tool.py +72 -0
  70. tooluniverse/jaspar_tool.py +30 -0
  71. tooluniverse/kegg_tool.py +230 -0
  72. tooluniverse/logging_config.py +2 -2
  73. tooluniverse/mcp_client_tool.py +57 -129
  74. tooluniverse/mcp_integration.py +52 -49
  75. tooluniverse/mcp_tool_registry.py +147 -528
  76. tooluniverse/mpd_tool.py +42 -0
  77. tooluniverse/ncbi_eutils_tool.py +96 -0
  78. tooluniverse/ols_tool.py +435 -0
  79. tooluniverse/openalex_tool.py +8 -8
  80. tooluniverse/openfda_tool.py +2 -2
  81. tooluniverse/output_hook.py +15 -15
  82. tooluniverse/package_discovery_tool.py +217 -0
  83. tooluniverse/package_tool.py +1 -1
  84. tooluniverse/paleobiology_tool.py +30 -0
  85. tooluniverse/pmc_tool.py +2 -2
  86. tooluniverse/pride_tool.py +30 -0
  87. tooluniverse/pypi_package_inspector_tool.py +593 -0
  88. tooluniverse/python_executor_tool.py +711 -0
  89. tooluniverse/regulomedb_tool.py +30 -0
  90. tooluniverse/remap_tool.py +44 -0
  91. tooluniverse/remote/boltz/boltz_mcp_server.py +1 -1
  92. tooluniverse/remote/depmap_24q2/depmap_24q2_mcp_tool.py +3 -3
  93. tooluniverse/remote/immune_compass/compass_tool.py +3 -3
  94. tooluniverse/remote/pinnacle/pinnacle_tool.py +2 -2
  95. tooluniverse/remote/transcriptformer/transcriptformer_tool.py +3 -3
  96. tooluniverse/remote/uspto_downloader/uspto_downloader_mcp_server.py +3 -3
  97. tooluniverse/remote_tool.py +4 -4
  98. tooluniverse/screen_tool.py +44 -0
  99. tooluniverse/scripts/filter_tool_files.py +2 -2
  100. tooluniverse/smcp.py +93 -12
  101. tooluniverse/smcp_server.py +100 -21
  102. tooluniverse/space/__init__.py +46 -0
  103. tooluniverse/space/loader.py +133 -0
  104. tooluniverse/space/validator.py +353 -0
  105. tooluniverse/tool_finder_embedding.py +5 -3
  106. tooluniverse/tool_finder_keyword.py +12 -10
  107. tooluniverse/tool_finder_llm.py +12 -8
  108. tooluniverse/tools/{UCSC_get_genes_by_region.py → BLAST_nucleotide_search.py} +22 -26
  109. tooluniverse/tools/BLAST_protein_search.py +63 -0
  110. tooluniverse/tools/ClinVar_search_variants.py +26 -15
  111. tooluniverse/tools/CodeQualityAnalyzer.py +3 -3
  112. tooluniverse/tools/EMDB_get_structure.py +46 -0
  113. tooluniverse/tools/GtoPdb_get_targets.py +52 -0
  114. tooluniverse/tools/InterPro_get_domain_details.py +46 -0
  115. tooluniverse/tools/InterPro_get_protein_domains.py +49 -0
  116. tooluniverse/tools/InterPro_search_domains.py +52 -0
  117. tooluniverse/tools/JASPAR_get_transcription_factors.py +52 -0
  118. tooluniverse/tools/MPD_get_phenotype_data.py +59 -0
  119. tooluniverse/tools/PRIDE_search_proteomics.py +52 -0
  120. tooluniverse/tools/PackageAnalyzer.py +55 -0
  121. tooluniverse/tools/Paleobiology_get_fossils.py +52 -0
  122. tooluniverse/tools/PyPIPackageInspector.py +59 -0
  123. tooluniverse/tools/ReMap_get_transcription_factor_binding.py +59 -0
  124. tooluniverse/tools/ReferenceInfoAnalyzer.py +55 -0
  125. tooluniverse/tools/RegulomeDB_query_variant.py +46 -0
  126. tooluniverse/tools/SCREEN_get_regulatory_elements.py +59 -0
  127. tooluniverse/tools/{ArgumentDescriptionOptimizer.py → TestResultsAnalyzer.py} +13 -13
  128. tooluniverse/tools/ToolDiscover.py +11 -11
  129. tooluniverse/tools/UniProt_id_mapping.py +63 -0
  130. tooluniverse/tools/UniProt_search.py +63 -0
  131. tooluniverse/tools/UnifiedToolGenerator.py +59 -0
  132. tooluniverse/tools/WoRMS_search_species.py +49 -0
  133. tooluniverse/tools/XMLToolOptimizer.py +55 -0
  134. tooluniverse/tools/__init__.py +119 -29
  135. tooluniverse/tools/_shared_client.py +3 -3
  136. tooluniverse/tools/alphafold_get_annotations.py +3 -3
  137. tooluniverse/tools/alphafold_get_prediction.py +3 -3
  138. tooluniverse/tools/alphafold_get_summary.py +3 -3
  139. tooluniverse/tools/cBioPortal_get_cancer_studies.py +46 -0
  140. tooluniverse/tools/cBioPortal_get_mutations.py +52 -0
  141. tooluniverse/tools/{gnomAD_query_variant.py → clinvar_get_clinical_significance.py} +8 -11
  142. tooluniverse/tools/clinvar_get_variant_details.py +49 -0
  143. tooluniverse/tools/dbSNP_get_variant_by_rsid.py +7 -7
  144. tooluniverse/tools/dbsnp_get_frequencies.py +46 -0
  145. tooluniverse/tools/dbsnp_search_by_gene.py +52 -0
  146. tooluniverse/tools/download_binary_file.py +66 -0
  147. tooluniverse/tools/download_file.py +71 -0
  148. tooluniverse/tools/download_text_content.py +55 -0
  149. tooluniverse/tools/dynamic_package_discovery.py +59 -0
  150. tooluniverse/tools/ensembl_get_sequence.py +52 -0
  151. tooluniverse/tools/{Ensembl_lookup_gene_by_symbol.py → ensembl_get_variants.py} +11 -11
  152. tooluniverse/tools/ensembl_lookup_gene.py +46 -0
  153. tooluniverse/tools/geo_get_dataset_info.py +46 -0
  154. tooluniverse/tools/geo_get_sample_info.py +46 -0
  155. tooluniverse/tools/geo_search_datasets.py +67 -0
  156. tooluniverse/tools/gnomad_get_gene_constraints.py +49 -0
  157. tooluniverse/tools/kegg_find_genes.py +52 -0
  158. tooluniverse/tools/kegg_get_gene_info.py +46 -0
  159. tooluniverse/tools/kegg_get_pathway_info.py +46 -0
  160. tooluniverse/tools/kegg_list_organisms.py +44 -0
  161. tooluniverse/tools/kegg_search_pathway.py +46 -0
  162. tooluniverse/tools/ols_find_similar_terms.py +63 -0
  163. tooluniverse/tools/{get_hyperopt_info.py → ols_get_ontology_info.py} +13 -10
  164. tooluniverse/tools/ols_get_term_ancestors.py +67 -0
  165. tooluniverse/tools/ols_get_term_children.py +67 -0
  166. tooluniverse/tools/{TestCaseGenerator.py → ols_get_term_info.py} +12 -9
  167. tooluniverse/tools/{CodeOptimizer.py → ols_search_ontologies.py} +22 -14
  168. tooluniverse/tools/ols_search_terms.py +71 -0
  169. tooluniverse/tools/python_code_executor.py +79 -0
  170. tooluniverse/tools/python_script_runner.py +79 -0
  171. tooluniverse/tools/web_api_documentation_search.py +63 -0
  172. tooluniverse/tools/web_search.py +71 -0
  173. tooluniverse/uniprot_tool.py +219 -16
  174. tooluniverse/url_tool.py +19 -1
  175. tooluniverse/uspto_tool.py +1 -1
  176. tooluniverse/utils.py +12 -12
  177. tooluniverse/web_search_tool.py +229 -0
  178. tooluniverse/worms_tool.py +64 -0
  179. {tooluniverse-1.0.9.1.dist-info → tooluniverse-1.0.11.dist-info}/METADATA +8 -3
  180. {tooluniverse-1.0.9.1.dist-info → tooluniverse-1.0.11.dist-info}/RECORD +184 -92
  181. tooluniverse/data/genomics_tools.json +0 -174
  182. tooluniverse/tools/ToolDescriptionOptimizer.py +0 -67
  183. tooluniverse/tools/ToolImplementationGenerator.py +0 -67
  184. tooluniverse/tools/ToolOptimizer.py +0 -59
  185. tooluniverse/tools/ToolSpecificationGenerator.py +0 -67
  186. tooluniverse/tools/ToolSpecificationOptimizer.py +0 -63
  187. tooluniverse/ucsc_tool.py +0 -60
  188. {tooluniverse-1.0.9.1.dist-info → tooluniverse-1.0.11.dist-info}/WHEEL +0 -0
  189. {tooluniverse-1.0.9.1.dist-info → tooluniverse-1.0.11.dist-info}/entry_points.txt +0 -0
  190. {tooluniverse-1.0.9.1.dist-info → tooluniverse-1.0.11.dist-info}/licenses/LICENSE +0 -0
  191. {tooluniverse-1.0.9.1.dist-info → tooluniverse-1.0.11.dist-info}/top_level.txt +0 -0
@@ -1,151 +1,182 @@
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- tooluniverse/__init__.py,sha256=PvYhaTdU4pSC8V3DMzbybfkLSad2OkpQWgf74P-lfH8,17507
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- tooluniverse/admetai_tool.py,sha256=xeYCpROq7oGjYrzKtDCHSN94sB5jVLuLSu3E_eT5Ko8,3470
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- tooluniverse/agentic_tool.py,sha256=i0TEs6WhF21B4gs5k7DM67qTND4qDMPD2lUzLyEWnnM,25627
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+ tooluniverse/__init__.py,sha256=RcmpZgvV5Olhnu24jhZ6KFmLMN6oHby-vS52yt4HIhc,19251
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+ tooluniverse/admetai_tool.py,sha256=k83iqy8_BeE2R_xPJlZ-xaEwaTwNvGc0u4ZUMV7ocwk,3469
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+ tooluniverse/agentic_tool.py,sha256=jN7UC6uQp7fxpDYqJf_2BWOb3b9z1oZufFQCRXBVeDM,27723
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  tooluniverse/alphafold_tool.py,sha256=NkKQttC0MfuetCTTcWTFEG2MdhyKwy3jb5TR4odiqAw,4658
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  tooluniverse/arxiv_tool.py,sha256=60e5moGt3XnwZeKx_nrvRZrwAavE11ok0j78AI5F6Xs,3610
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- tooluniverse/base_tool.py,sha256=zagthjIceQN0F32pDhKE0uCqm9uqVEDG6OZgSIbNCRo,12479
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+ tooluniverse/base_tool.py,sha256=B268ek7tmA3jH56tPhQEMmG2J_Q5xqhH_6GGES56lbk,12861
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  tooluniverse/biogrid_tool.py,sha256=tszza6Kf1-PKsoVw5GIqLak20FvhFY_PFSVY9XxDuIQ,4274
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  tooluniverse/biorxiv_tool.py,sha256=uffhxXMOWR6b2jzxka-Qss1LjliQTuX-skIIc7RAaPs,4133
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- tooluniverse/boltz_tool.py,sha256=Kfcymeu6FRRpWLw7dWhEON4PUBTsHuBiTAPJlYH5ZGs,7930
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+ tooluniverse/blast_tool.py,sha256=BPvkxeMWboLpwLJmO3yi4u0Dx1vvKOqKVO5tLa4xvGM,4960
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+ tooluniverse/boltz_tool.py,sha256=X0-DP0VqN-SqNRBcksqNJ-Pnhoj9qwS-wf6iQu__nRE,7965
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  tooluniverse/build_optimizer.py,sha256=UReMfhTGhGJqcEWdH6d5xfI-y3zJlaNfsei7qXxeCN0,2832
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+ tooluniverse/cbioportal_tool.py,sha256=L1eYEgPqMIJM2LkyVcnafUva6oJs_nn40bBQUB9s8tM,1389
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  tooluniverse/cellosaurus_tool.py,sha256=W_npl3ga45-Hpsdq7YyGsD5_DnR2AmyaQVYNjiZoNOs,47902
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  tooluniverse/chem_tool.py,sha256=tJusjamWNp0x8Ke-cvVgKB7-clvD6LXTaXA0Q0fqQv4,8336
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- tooluniverse/clinvar_tool.py,sha256=2NKPKC3b3eBzuwK0yc65bzPuRF4I-Jv_KjsVnBdiE6M,2945
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- tooluniverse/compose_tool.py,sha256=Q0KwVPgbac17VDnkP3pV-st0rNbG__CX0AMux-Os5lg,17117
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- tooluniverse/core_tool.py,sha256=hHD8nVSIy6lK2vF3ygKz73gsDEPYEL-otXZXeR7M2SY,5083
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+ tooluniverse/clinvar_tool.py,sha256=8UtMp-xOnFiX0a6w0VLF9uLvyQfB73B1VN7Uw8PFTms,11448
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+ tooluniverse/compose_tool.py,sha256=eeWiJpg2L-orfU997dUD7hy9-Ho8tb-Kmjyeaoo4QwA,17108
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+ tooluniverse/core_tool.py,sha256=iJ3KyiLI-WNleNA38Ob93f_xa7wGPdIZDqjfp4_GP6g,5081
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  tooluniverse/crossref_tool.py,sha256=oba0kkWI9m9dugf_th1nEXPWPF4onJkFUyhp5h5H4pM,5736
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- tooluniverse/ctg_tool.py,sha256=3nR_F-YGpxVmTa6u5xi-mrTmLSH7OBehP4EJo-CQS0Y,46053
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- tooluniverse/custom_tool.py,sha256=cUX16ADw3vBtyqb7cIBpgHo_-CjVnkAPPQhw9H0k6T8,3793
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+ tooluniverse/ctg_tool.py,sha256=2V3jgjOqyqMNqiYzz47fa506hAWINNIfPl9Z6WopSWI,46049
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+ tooluniverse/custom_tool.py,sha256=5mh6XWabRKL6xFFiKgcJnOyJus6tZDdV0aTSsclrtkI,3792
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  tooluniverse/dailymed_tool.py,sha256=sxIs0xYwX0CVlkhHaPwvGV-Oo1OW2tvsWZypAWujt9k,3800
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- tooluniverse/dataset_tool.py,sha256=cmcCz_SFs7V78EZDNLesnQ2Qe9fVz1jOLghrpwe8hM8,11371
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+ tooluniverse/dataset_tool.py,sha256=6D5Vnqp_XzwnoFPm6sFWwyw5ZBhE36cgwGS9oN6d3iU,11369
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  tooluniverse/dblp_tool.py,sha256=aPyEivx5TYUxws7zOsHswQtkVphblMsVPw0lSpyoIQA,4488
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- tooluniverse/dbsnp_tool.py,sha256=xOa3t7YdZlnhZ146fDS13Yx6Qo0eiJ7BO6zPQY41WQ8,2188
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- tooluniverse/default_config.py,sha256=cI8Z7seXqxDdIYFbIuIU9vXprNRD3ca4rTJTFAH0zsE,9384
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+ tooluniverse/dbsnp_tool.py,sha256=oMlje0LhsQVjU7PVnA_lPo_hT4TE-K_syBqZns8PnbU,8133
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+ tooluniverse/default_config.py,sha256=2JbBRqjb9SUbw0BhnuB4xX82XXDZ8hik4VUnCyIH5Xo,11353
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  tooluniverse/doaj_tool.py,sha256=mzpnUwYfXdqvyn-txbV1cdWNS7Ty8g6fbvWgF2JN30I,7032
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  tooluniverse/doctor.py,sha256=QQ6LiV3HPkWljVKh52QptQmV3xFj53_2yo-A_n8NQ5Y,1326
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  tooluniverse/efo_tool.py,sha256=J4tjPFlNa9KhmQTEToBZN-m8jMuF1IKf2yQb1dyTeXI,1394
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  tooluniverse/embedding_database.py,sha256=ua-yIyv3dPq2GHdyZmiwZyaUlkKYyV3nslB4H9asvDo,24682
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  tooluniverse/embedding_sync.py,sha256=Cq3g64MjNXXpiImrzPMNsCTvGZeEI9009OlHOD3EloI,14669
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- tooluniverse/enrichr_tool.py,sha256=YXuHwoG_Hi-kUWK7cY_X21b5pbqoREdG7fJxKq050Jg,9472
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- tooluniverse/ensembl_tool.py,sha256=i-kYliN5juitLTJqGiWcm7RXFV8k29XlfNBUC1Y1Z-M,2195
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+ tooluniverse/emdb_tool.py,sha256=HKwuiJwt3gUymvhlqWrxiMm9x_jHB4-uhT6k1sPd8xc,1107
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+ tooluniverse/enrichr_tool.py,sha256=beM7xZiZ6FdHgYQUSNb_jfkcbrNC8CumXNJgPE9e1PI,9458
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+ tooluniverse/ensembl_tool.py,sha256=Fjn7dABWpZ55DOQi0sBH2j84nPwSmU4yog3D2pBHAT4,4970
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  tooluniverse/europe_pmc_tool.py,sha256=-3CAq5tDhS5NoeHifevadBgP_MHDZJdwNmM5SvjbAa8,6080
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  tooluniverse/exceptions.py,sha256=3svVCG7H_G_8E1mco74KWi44u1M7V1JojVycSEWdi_o,5386
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- tooluniverse/execute_function.py,sha256=hJxcHbewIfXXjPvV7HBZ0PrECMOKTQVhMOFRI5K6fbQ,107533
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- tooluniverse/extended_hooks.py,sha256=1Cg0rETh6_D21YFVqD-FhL7y4inZAGyQ6vMtHyugueg,15376
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+ tooluniverse/execute_function.py,sha256=76QpMQokYxAqHWC5Gewrv8VZa17n8PEFLfYSyNXxWRw,128247
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+ tooluniverse/extended_hooks.py,sha256=bBI9SZM6IFiHblsZscBotOFNwlkUNi1hrp3cS7JVuZk,15372
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  tooluniverse/fatcat_tool.py,sha256=-QEOYbv6KEcrOiOa27Ms1xm0sySB-vW4rWEinsS6EDw,2051
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- tooluniverse/gene_ontology_tool.py,sha256=l89XYdBEBm3eN3dG0lR4oV01H16_9IUB6a2c7W_c7Lg,7180
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- tooluniverse/generate_tools.py,sha256=rx-FMNPBSZ0_lP8yNNsW9BtBtT6WtORGuEK-kJVRKic,15226
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+ tooluniverse/file_download_tool.py,sha256=jFH8cFNvcd6snO2lMw1NCdZAPoQ5zoEHi7MGIeTTut4,9354
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+ tooluniverse/gene_ontology_tool.py,sha256=IeyRVTQXGaMzdDyPoI5I3IsYBfCTQlyvmUFGyygb_Ks,7179
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+ tooluniverse/generate_tools.py,sha256=7SShSVYViyPmXBzREwH5b9AluWoWWP1Ac1iGuNKhuZg,15223
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  tooluniverse/genomics_gene_search_tool.py,sha256=beK6mJTBBvXb9TKF8piYoq-plpm36DETl05SRMFjDNg,1953
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- tooluniverse/geo_tool.py,sha256=t73P_rbeYE_NeDEVkV6_1wYV_PYGgK8gFTINxOwu2e4,4136
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- tooluniverse/gnomad_tool.py,sha256=imVgxNiNHfQSdOiDj-Ub1gKIGj1XEVnSoTSL18NY5Yk,1817
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+ tooluniverse/geo_tool.py,sha256=swkyG3WYSc_OadX1vvAnnUqRBjnQiuifuOlKf_1BcDo,5930
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+ tooluniverse/gnomad_tool.py,sha256=bkQSw4FxOmegP_9Nomn8JVGmZ6zXcQX5XioMf8ZtjGI,3120
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  tooluniverse/graphql_tool.py,sha256=y7ztNyb9hn4OdSGKhLsHev_snkNgbAwJZL8ZGHm0LEk,8980
46
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42
47
  tooluniverse/gwas_tool.py,sha256=hq4VhB93DhczZo0xRGjGS9AtdKWL0O_XQy3eoV_fi8E,12351
43
48
  tooluniverse/hal_tool.py,sha256=HrU27B6TK_gMtk8tjafpVkpD1ABDlCOo1bsLmBNhaQU,2485
44
49
  tooluniverse/hpa_tool.py,sha256=siRA0usQ0Rggloy3VL1b56QlytabndXS8Xzc9H3uWs8,64998
45
- tooluniverse/humanbase_tool.py,sha256=xojNboYvFrW_LAzOzKaexp6tvyGSbUazpMfOvX5ETXY,15006
50
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51
+ tooluniverse/interpro_tool.py,sha256=xTCiFGE2QnbxNULYxNBiObUG-97cybuN5NENlv4fFro,2372
52
+ tooluniverse/jaspar_tool.py,sha256=Zr-MLzatH2KMi3cNYOnV8VTbwbcmlaWcTavi5fQGQr4,1114
53
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46
54
  tooluniverse/llm_clients.py,sha256=6EAhxUmEpdKYjWMG6S0Q57mdp1JuCPxPehIudofCPzA,30484
47
- tooluniverse/logging_config.py,sha256=rMjpGw5jkJGsIN2AakLOCQ-jVEYf8UhET7sJGdrfCNQ,9107
55
+ tooluniverse/logging_config.py,sha256=56hAduRA5Xb023fq4IjJIxlGEZ_ULVMxHRL2rTeApQc,9105
48
56
  tooluniverse/markitdown_tool.py,sha256=bnUA0Sw8KjVygqf8F6k3ATY7K23NWFqycnnfs9mm5qQ,5492
49
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50
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51
- tooluniverse/mcp_tool_registry.py,sha256=GsTXbGbMGo3oXtoHSFXq_4p6XieZhzm4mHP82fNoRok,31844
57
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58
+ tooluniverse/mcp_integration.py,sha256=7gVdt2ZObIEL5NXGLahY7oWeA5MlaPOpqpruMQgc9oQ,14026
59
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52
60
  tooluniverse/medlineplus_tool.py,sha256=__D7W2Khl05WllMnoV4Owv3pyl5EXS1lzEJmAE7PbD0,13214
53
61
  tooluniverse/medrxiv_tool.py,sha256=QCJ0BdgI47IfSwvKw90LdZLRq_4sbV4ok5HdGzv5w5c,4140
54
62
  tooluniverse/memory_manager.py,sha256=hAUvWen6xG5DMO28GokSfGPCTz0zrzMK-QO8EzRFnPM,6130
55
63
  tooluniverse/molecule_2d_tool.py,sha256=SPXqi_KTN76ksG1DO0QP9ZKzcRbdQpXjfOau11hgC0w,10568
56
64
  tooluniverse/molecule_3d_tool.py,sha256=uq3Q58q0LlB4y7xRaOUzoyQQp8GLjbWSSFdHin4tOsg,18727
65
+ tooluniverse/mpd_tool.py,sha256=DWfbPt8v9ST33dDlheJELEVVgHvQTL9W2C5zDHVdKAI,1472
66
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57
67
  tooluniverse/odphp_tool.py,sha256=5MUPcXBSi6wGGTN56vhNOyAZvIRLiTraxKpxKiQy1pU,9627
68
+ tooluniverse/ols_tool.py,sha256=en1uJyJC-7b30kzdu9t5dIAtD3KJeu0mBb1uYXUif_c,15625
58
69
  tooluniverse/openaire_tool.py,sha256=LPic0ErGhHV6ceGsUPlS2zTzQdwWvNPZDrnDAtou3I4,4578
59
- tooluniverse/openalex_tool.py,sha256=ou_INKT8nct_NKjWTan7bdKzZ_i8ZwkxeHCwU9mN7dw,9439
70
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60
71
  tooluniverse/openfda_adv_tool.py,sha256=t5kffba0iNDVtFHYPtfLW8ql4dKLaWwdcFnE9cNmNWE,10168
61
- tooluniverse/openfda_tool.py,sha256=AetafmFr1IygGAL8p1-URsNahVdN52tN0FvToTlkcMw,27425
72
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73
  tooluniverse/osf_preprints_tool.py,sha256=uO0VmCWdROXoq1U4w1YIfTxZkDpgYWBXh7MJ-fe_Jak,2193
63
- tooluniverse/output_hook.py,sha256=6alRemNqe367xKX1USyXB-FEzDmmPVF9me_DPtopDCc,49433
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65
- tooluniverse/pmc_tool.py,sha256=2K8ux4jv38XbEY6FPBiW5KZDflHo8WA7nRmLJ3HOHYk,6268
74
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79
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66
80
  tooluniverse/protein_structure_3d_tool.py,sha256=byvtvW-B6aPUmW_OpcYKHFdbL-g3IWZk1RSN0cNYjcg,12318
67
81
  tooluniverse/pubchem_tool.py,sha256=14C_5uz0RNzv5HaSAXHlq13TZLtlkhmJhr7RrjI91Yk,6415
68
82
  tooluniverse/pubmed_tool.py,sha256=EYPL_fsUdHuL-yFFULavWZu8lPp23wVKIJ-avDLlFeQ,6146
69
83
  tooluniverse/pubtator_tool.py,sha256=WdFufeT3hY2lCq6vb9SLF44UYJ48PiZ1mf4bSfpI7mg,7151
84
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85
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70
86
  tooluniverse/rcsb_pdb_tool.py,sha256=8N6bvlD2KIHfNum_FvbXwIa96mKvHorno5ZdjAHgmrc,1550
71
87
  tooluniverse/reactome_tool.py,sha256=ngmJXCcQfsu5d8XcX258ZHW4DIBi45sSjYNwUBk8nxo,4481
72
- tooluniverse/remote_tool.py,sha256=ywb5xaJBqOT38_r5FBVoF3QFQDcLvfOH5AQrT-g7Fcs,3368
88
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90
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73
91
  tooluniverse/restful_tool.py,sha256=H7alq_vO3G4iVgZIZrrWh9vq2ForJN52Fl7_QOq7yaM,4409
92
+ tooluniverse/screen_tool.py,sha256=JuSj-qhFUSuYsHlyQzdXdOhVhEzVoJjSql1dWpLOp4A,1580
74
93
  tooluniverse/semantic_scholar_tool.py,sha256=gaDDL5Xy4Ij3qNqipZvwRfOBSyzGyIN8AANT-pYKHvI,3227
75
- tooluniverse/smcp.py,sha256=8wUqsfU23hokFheTec3arbezLTWhyC-j-AQ4gbTSA0Y,104045
76
- tooluniverse/smcp_server.py,sha256=EKzG-e-LVCVpShIUDxogaNRLZI-LS9m9QPy6Rbq0mfI,32482
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+ tooluniverse/smcp_server.py,sha256=kLJesbeWOSL1eBhVlv5k1WCTG4BRLTpDEkfySyaFG-8,35214
77
96
  tooluniverse/string_tool.py,sha256=3rio0Lt97FuU6fbpykq3ETqD9pA4h_gPR0uXKRb7Zu4,3936
78
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80
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97
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98
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99
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81
100
  tooluniverse/tool_graph_web_ui.py,sha256=68s1MPXTcT6bzdFfuat9gvSNjSgwHxNC-TztfH3raeQ,27987
82
101
  tooluniverse/tool_registry.py,sha256=DYA97MzFgIZ_8oAy0CTqg99pfz_bIS-0A-gbyLkiQuw,15616
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- tooluniverse/ucsc_tool.py,sha256=0ZB2otPTfUYz2VxloC6OZXu2657sWWcj0mb0a3AvcjI,1879
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102
  tooluniverse/unified_guideline_tools.py,sha256=Vhnqis4je3JZDJb7KfynAMX2D2yvW9I71_9mIsG1COU,88376
85
- tooluniverse/uniprot_tool.py,sha256=oIy8O0tHQWgb1rAtxTGZfXEVJLLRM5fFVe2SVc5OpNI,6231
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86
104
  tooluniverse/unpaywall_tool.py,sha256=eqdsZZMRCOsMQjMzJRzkNk9xSwIWlsRrrPiTrIBDsFg,2070
87
- tooluniverse/url_tool.py,sha256=8dY1Uoq0VHPwaBN7Z3Kw9ceNyCPO61FLexAmhHsKCUI,9018
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- tooluniverse/utils.py,sha256=9ZjQY_zp1Alfulpyt8bpoJ7n_d0y2IxBaxLmorp7BSw,20697
105
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106
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107
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90
108
  tooluniverse/visualization_tool.py,sha256=A0sIf3n4_SUbhc-NwNdVtC0rNRwNxbeHonPHUCZYM-w,32653
109
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91
110
  tooluniverse/wikidata_sparql_tool.py,sha256=CjOuMKsGOFJB2b5qJDimhgYqI_-Yl-RWud-maN0GMNI,1987
111
+ tooluniverse/worms_tool.py,sha256=odDijc320gWrGfkzXgtnnG4CrkvpXcjxvU0_JmaSH3I,2313
92
112
  tooluniverse/xml_tool.py,sha256=ynv6NEU-QTSliB9P02qnHxoxIGeRu7Bb-KHOmR0pN24,14671
93
113
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94
114
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95
115
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96
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116
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97
117
  tooluniverse/cache/sqlite_backend.py,sha256=D_BnyTld9oONmOuDKWyiy8pmUMO5VCb4DAAK-ynY_uE,8161
98
118
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99
119
  tooluniverse/compose_scripts/biomarker_discovery.py,sha256=Im7SO1boySOVAcOz5JtuNw5Uo43i4SLBVgDRyXUke2k,13173
100
120
  tooluniverse/compose_scripts/comprehensive_drug_discovery.py,sha256=k5aoTkC5bTneM9asOuYKz0dCwewVv2kWOXUdS_CAoOc,8588
101
- tooluniverse/compose_scripts/drug_safety_analyzer.py,sha256=4lmGYY8a4T4WbeHIUG1aAtxowk3SFnJNEtndCTmnJfk,3164
121
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102
122
  tooluniverse/compose_scripts/enhanced_multi_agent_literature_search.py,sha256=GbdI4uYY8Y1OOXub5fOoMnLOOZ-7hD4kl3CA6b3jqG8,9948
103
123
  tooluniverse/compose_scripts/literature_tool.py,sha256=8-NITTQHj6vdn-vo_d0W8l6Ed8bvDTkDOJ7yvhaE-lI,976
104
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105
- tooluniverse/compose_scripts/output_summarizer.py,sha256=jcUA-6kIIMjOzS78QvobIWPDiAzl7M70KU9qBAb0ZXo,12225
124
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125
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106
126
  tooluniverse/compose_scripts/tool_description_optimizer.py,sha256=L6Kd8e6Af8pD6dy8jrFzJq5jq-QNbg72gkQktn8IDBE,32175
107
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108
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127
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128
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109
129
  tooluniverse/compose_scripts/tool_graph_generation.py,sha256=rbkvAZFnGu1frsafHt_OtCrtWEb1e45o7HInPo5x_DY,10637
110
- tooluniverse/compose_scripts/tool_metadata_generator.py,sha256=73_JBPS-yAZEbViBwEFxcLzpbAt-arfMpahzrdhsxMc,20846
130
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111
131
  tooluniverse/data/__init__.py,sha256=47DEQpj8HBSa-_TImW-5JCeuQeRkm5NMpJWZG3hSuFU,0
112
132
  tooluniverse/data/admetai_tools.json,sha256=08LCNSCZJxL6ZuPF1mVfbdlh9f2X5tnEwIYU7RcLLSM,6497
113
133
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114
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115
- tooluniverse/data/alphafold_tools.json,sha256=bNFUKlidqkAF9euRJxX2XXXZ9YfnHg1laDekumH3RTU,14167
134
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135
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116
136
  tooluniverse/data/arxiv_tools.json,sha256=v4FNgFMhNX2WBNajje1xpa5250kvifm_RXY1WzPGgFw,2591
117
137
  tooluniverse/data/biorxiv_tools.json,sha256=i7iNyLJDRCPlNd6QjQ9Ml0rUwkcBPjXLG3QOa6cT2sI,2007
138
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118
139
  tooluniverse/data/boltz_tools.json,sha256=_pMSRBkO3uj4vjYnQ7H6qbZFa4rzc9Looj6zHRyIkMg,303
140
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119
141
  tooluniverse/data/cellosaurus_tools.json,sha256=JLn0d5BAj9U5bA2Soy9PRsfO4EeSLOK0nlYT_HCJnio,7388
120
142
  tooluniverse/data/chembl_tools.json,sha256=e7l7Z2r6EM6QL_DL6UEdtJ5BTJysebxgSZBixeKEL3o,850
121
143
  tooluniverse/data/clinicaltrials_gov_tools.json,sha256=2trH2fs6iKrJrazSiNp-nxbTjdjpSohlOpdM4uy8BMQ,14321
122
- tooluniverse/data/compose_tools.json,sha256=3CiMpiFdGNkJDw07CH4M-SU0Kl_xVGAQC376IxmlUtg,11721
144
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145
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123
146
  tooluniverse/data/core_tools.json,sha256=UB8aFpPZ5MVIju0OrfjQcJQedTPwCcVNqYNhPs0FmLU,3461
124
147
  tooluniverse/data/crossref_tools.json,sha256=oUXs3xHmNBq2ugsjpmQsY1JTRctD_NF6Qx6Yg3I82sk,3975
125
148
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126
149
  tooluniverse/data/dataset_tools.json,sha256=BKf0HAQC9r499fL3S5s0aH0FyDC0V2vawo5uqXvYwQY,30313
127
150
  tooluniverse/data/dblp_tools.json,sha256=_D5zz8ChRJK7XE_YQ2TOrYRz5kFTiuSIkdtKswk7NUQ,4202
151
+ tooluniverse/data/dbsnp_tools.json,sha256=UguNB57ykLnMNK39xUMkki98nOhjtOfi3ox0bXJ7nio,7249
128
152
  tooluniverse/data/disease_target_score_tools.json,sha256=Z0-Uc_tZG83ToTIQvxe3cV5I2P6xh7eTq0aUpmGmxmo,23399
129
153
  tooluniverse/data/doaj_tools.json,sha256=P2A_UM7TdJyEO3gM-TH1dK1ehWKigoTWvxTD1pUTyCY,3915
130
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- tooluniverse/remote/depmap_24q2/depmap_24q2_mcp_tool.py,sha256=6G_8MZuohXrt-jMmt8jVEsHHIPgL1IP5vcJHp4Coeb4,18994
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+ tooluniverse/remote/boltz/boltz_mcp_server.py,sha256=0k6TxiBSngwpF8HA7RBuZUiWT7FosRkr7nN2NXCjfc8,2101
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+ tooluniverse/remote/depmap_24q2/depmap_24q2_mcp_tool.py,sha256=wihoUk-2AuLTV9LeTJ5ddtwhl1eJpk2ZKg2KftzUYTE,19010
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- tooluniverse/remote/transcriptformer/transcriptformer_tool.py,sha256=ZU_TT340LBwjTuowTaQV6QcANcsjYimA4CVSJHdU0c0,25229
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- tooluniverse/remote/uspto_downloader/uspto_downloader_mcp_server.py,sha256=ku2HdQ8LFXZxyskj5zQFDRQ_P47e15L_hkR20bNX_2U,2366
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+ tooluniverse/remote/immune_compass/compass_tool.py,sha256=lbv1s0xKtw2sZVjXyZ55POgRPS6hu84dUIqcPfPJI9k,14420
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+ tooluniverse/remote/pinnacle/pinnacle_tool.py,sha256=jMf6_ol-nie3Ltl7jg8G14oTWqQHS-qS2MgwgdioTGs,14630
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+ tooluniverse/remote/transcriptformer/transcriptformer_tool.py,sha256=VsPppp5V6mtZO_ZvxzLnLh1ff2HXX4Jab5bk_NikMoQ,25226
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+ tooluniverse/remote/uspto_downloader/uspto_downloader_mcp_server.py,sha256=5iwCvgC1frQemoWUACayL3ViAW3yZ93rL8eI4Ufyqsw,2363
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- tooluniverse/scripts/filter_tool_files.py,sha256=IZZIeSmBfHKntno790er1hQHSDcrxfdIHZwZ-Lvq7I4,6415
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+ tooluniverse/space/__init__.py,sha256=40yKWDCfUjqUNaWST6mccv2RCAPc0W4IuNX5QOYobiM,1338
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+ tooluniverse/space/loader.py,sha256=w8NHy_WBYai8CYKKD6bf7lmzQoGDE6eGwRJUY-d8tx0,4415
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+ tooluniverse/space/validator.py,sha256=yE9obRHtQE4YfZ5ltq3LYMKSqO-XejO_-eevHcZkDTo,12633
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- tooluniverse/tools/ArgumentDescriptionOptimizer.py,sha256=GW5UUyWWu2gMBdQVuZH-wFzFD_yqE_5tNIFRVtNcZp0,1529
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+ tooluniverse/tools/BLAST_nucleotide_search.py,sha256=sve_4f9RnbfA5LJF2EJ1gr0FkaSvprc8llTXoufByOg,1599
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+ tooluniverse/tools/BLAST_protein_search.py,sha256=uScC3L0qZN-hG-21H2Y2zdTELPlkZYhBGaflztYIUtw,1534
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- tooluniverse/tools/Ensembl_lookup_gene_by_symbol.py,sha256=49sFDwX8qpfaTq38Faz0xUE0jtk127rU8iFsLcPOqkM,1381
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+ tooluniverse/tools/EMDB_get_structure.py,sha256=Yd8DIms4rhqUwSFTqkaA76veuG7tLn9YpPRorZ2tfR0,1082
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+ tooluniverse/tools/GtoPdb_get_targets.py,sha256=zpJ1z31q-246Z86sU20baOdKbyjYcPReAF2QNaTQeF4,1241
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@@ -452,10 +501,15 @@ tooluniverse/tools/HPA_get_rna_expression_in_specific_tissues.py,sha256=_5KhUK4j
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+ tooluniverse/tools/InterPro_search_domains.py,sha256=YuEr44OhR3cYMvgAUglXZiUNA8PpdZpWElDFMmVkzAo,1376
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+ tooluniverse/tools/MPD_get_phenotype_data.py,sha256=D-r1CXktaoDR5tfyToNDGyOQSIoM70WFWYZolyrgZDI,1567
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+ tooluniverse/tools/PRIDE_search_proteomics.py,sha256=xhMMTp3CLN9D3ck81mCqZo8ajFHGdWIsFY6vlB3Ac8E,1211
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+ tooluniverse/tools/PackageAnalyzer.py,sha256=V0v2R6lxZ0xMSZV273fV1aKFMLZGIY-SLoHA7PT6Sjs,1486
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+ tooluniverse/tools/Paleobiology_get_fossils.py,sha256=-IzDlFcZ-A5pnOCyCzKE2WPDh8z15n5tbE9bjPO6rP8,1192
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@@ -544,34 +601,33 @@ tooluniverse/tools/PubMed_Guidelines_Search.py,sha256=gO5Lxv2W2ATDenpyXpWNXtl24W
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+ tooluniverse/tools/PyPIPackageInspector.py,sha256=Kd47cuwVTnpfeNIGNFfjX55sJnqtTEw1rkgAWZfgFq8,1754
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+ tooluniverse/tools/ReMap_get_transcription_factor_binding.py,sha256=JE9ZXBCRTzpudve48GN9O_eXUVMPri-S3OqlEVAUbuQ,1586
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+ tooluniverse/tools/ReferenceInfoAnalyzer.py,sha256=cVAMlJFoeusKVwECSX3bw-hD2RaCHMfCkwzm410zg9g,1498
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+ tooluniverse/tools/RegulomeDB_query_variant.py,sha256=aMdyI1-VRnvvcWDX58ck0NOJzfhDai3RnRHA_mbXnF4,1115
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+ tooluniverse/tools/SCREEN_get_regulatory_elements.py,sha256=EIeWtX9ZwLn5DPx1WFD5gnvtc7kgSWcYbAUs4F8XihQ,1626
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- tooluniverse/tools/TestCaseGenerator.py,sha256=RofMgoFDe-Xfm6SOg4-olck9Z8I6HQqp0vQKNrj5qsw,1244
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+ tooluniverse/tools/TestResultsAnalyzer.py,sha256=WS-cinKcKPirMp4kb1PKMUyfZAnPd8UAv7xujdeTK4w,1457
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- tooluniverse/tools/ToolDescriptionOptimizer.py,sha256=FX2XkAkS_ObxsG8bysNNHrf7ZfcTYuIBZMLKkUDWJ5Y,2037
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- tooluniverse/tools/ToolDiscover.py,sha256=IyuUww17nU_9twGz7uUGNNyXqGcsgk0s1nygl_CFbsA,1798
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+ tooluniverse/tools/ToolDiscover.py,sha256=jwFu3j3wDYDoJODdSjktNqqnpBpvJNQ0nvJ5VSzYWKU,1764
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- tooluniverse/tools/ToolOptimizer.py,sha256=22NdQjcuOwz9GPkHpVsbs5e2ti1rEmELpuvlwHd_qvk,1591
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- tooluniverse/tools/ToolSpecificationGenerator.py,sha256=vPOWOMajo65gXyNm2ZH8nxAqz5IaSlEZp6kAjZrXRCo,2088
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- tooluniverse/tools/UCSC_get_genes_by_region.py,sha256=_nAOBnyGUYeLTZPF0Vw76Igsqu8JHFYMfKAMbO7UuTg,1626
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@@ -582,17 +638,24 @@ tooluniverse/tools/UniProt_get_ptm_processing_by_accession.py,sha256=InLxk49dZzn
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+ tooluniverse/tools/UniProt_id_mapping.py,sha256=_dnr9B3YZg3Uw2u4N95z2l5cBzMb8sVt5K0pXkqkzSA,1742
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+ tooluniverse/tools/UniProt_search.py,sha256=XFrxQnYTZLjUygEBpszaCtJTcPCqgQOuige0N8SfpIQ,1769
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+ tooluniverse/tools/UnifiedToolGenerator.py,sha256=acNEyvmkFUxfrSLVC2hg6TOsa51gCdzmJGRCeNMYBPQ,1646
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  tooluniverse/tools/WHO_Guidelines_Search.py,sha256=skaP8MvndBmB8bg9HM3mQjWpFTJFLIO_cfRI4WVcSL0,1380
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  tooluniverse/tools/Wikidata_SPARQL_query.py,sha256=7KoUwdza5R9uVOT6TzyU3oshRzUYDO91qqpwJA8PB_8,1426
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+ tooluniverse/tools/WoRMS_search_species.py,sha256=HwdHobOObkxCHumMz0QhNXxnWY79TnZ6QJABffugCR0,1182
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  tooluniverse/tools/WritingPresentationReviewer.py,sha256=7OiJnRcSWjZSp1lJsM9wxBupdMAeHXNymYev-AWU-iI,1171
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+ tooluniverse/tools/XMLToolOptimizer.py,sha256=Th8HsbJ1umYcxgr4e98fxLFDNlYrZSx1aVKVSo9lN4I,1425
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  tooluniverse/tools/Zenodo_search_records.py,sha256=PfoUaXvGUCifJqFvlkFei6t8CeiT5BHuiEO7d5WApUE,1638
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- tooluniverse/tools/__init__.py,sha256=TjCVrrE0xDFTZGmXR_FL7_6KpXNLdjB9y9aI8cOd0Ng,78576
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- tooluniverse/tools/_shared_client.py,sha256=USiz6n6TD5T42TRasjOvYqUvl8GnDIxzubfiv_U5obE,4839
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- tooluniverse/tools/alphafold_get_annotations.py,sha256=QqykC55liO1JyPebtS_fnnAGaJ9niTgex6IL14JplIo,1401
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- tooluniverse/tools/alphafold_get_prediction.py,sha256=7W9r_U6ZoZAnMKUBWWZwnaY4WVpMORJxkIdnCiXmBTo,1489
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- tooluniverse/tools/alphafold_get_summary.py,sha256=g1WTBshAh0Dy0bh9yy6lsZbOTQocZMLvaz0uwJ-zVQk,1241
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+ tooluniverse/tools/__init__.py,sha256=aoSOjRgi7N-MsGi74FJU5nrAcE9I-fCIO3OIuRL1Ct8,82405
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+ tooluniverse/tools/_shared_client.py,sha256=jdph8DNsFM_e-CmSl68QFlqRxof6q_zeYBV1fGuJV_8,4836
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+ tooluniverse/tools/alphafold_get_annotations.py,sha256=qKEtb4gU3VKtvGv8Xfj-YqySKzcj8eOMi9XUfIbF6mQ,1412
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+ tooluniverse/tools/alphafold_get_prediction.py,sha256=lZ4evDXJ8vwjubI9sD_tVrHoImc52pztcm8M6VsYrqE,1489
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+ tooluniverse/tools/alphafold_get_summary.py,sha256=S0wG5YZK_6HKW55_piQLUo74aPtch-Mhl__drT4lSmU,1252
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+ tooluniverse/tools/cBioPortal_get_cancer_studies.py,sha256=yYuiX4zV_Y21Y-HVO6NXtlPuLQ1PI3eekzX052YCeC8,1104
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+ tooluniverse/tools/cBioPortal_get_mutations.py,sha256=pX9nLf_dZ6Uoee-JnKT9JuD7T07G0lFmGnjgx0P1EdA,1229
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  tooluniverse/tools/call_agentic_human.py,sha256=PRhyDsySP7j528OPoOta1J-ViQzPnBDdR6E2_jOLrMg,1192
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  tooluniverse/tools/cancer_biomarkers_disease_target_score.py,sha256=g5R4MCTXz-t0J7eTkrrre2Hsm-wqz17zN2cYyf5aJ7k,1459
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  tooluniverse/tools/cancer_gene_census_disease_target_score.py,sha256=nJL7IxOaAj8fxtuONbyCBuwDM5-37F3OtdcVxAiizRs,1463
@@ -600,12 +663,19 @@ tooluniverse/tools/cellosaurus_get_cell_line_info.py,sha256=qIscXy2aT49n_Fuits5H
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  tooluniverse/tools/cellosaurus_search_cell_lines.py,sha256=KBJ4fisp-DxCR5FBzcaFkn68WFhkjvd3Siy932yoV-0,1478
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  tooluniverse/tools/chembl_disease_target_score.py,sha256=Zm9dbl4JVuIKjWhe42EzBNDzAc0cRlszCy7hL_btl18,1415
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+ tooluniverse/tools/clinvar_get_clinical_significance.py,sha256=Yhe7bvWIts3H8jJ0T3-fsNHNvKC5jtbdTENjxj5y4IA,1303
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+ tooluniverse/tools/clinvar_get_variant_details.py,sha256=GIYqG-N7npVpfwAkGWpI9u6piTTj2MYE5XiopQkBoQ0,1279
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  tooluniverse/tools/convert_to_markdown.py,sha256=GcCsCoTKLzC_gS6CUiIP-9VdnWsF4A9VWztgQV6jD3g,1534
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- tooluniverse/tools/dbSNP_get_variant_by_rsid.py,sha256=O58MhyK2XUSw6C12HTQNRqIa848pC4c7ITfE1ssR6Yc,1174
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+ tooluniverse/tools/dbSNP_get_variant_by_rsid.py,sha256=qCOl1oFRi4m7EISFf30Dm3LnZee2TgDN_2ssu3fJZCM,1205
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+ tooluniverse/tools/dbsnp_get_frequencies.py,sha256=GYTYK5vdAXla2Is9GBTuCPKyzD69IDHj8fDwRWMazwI,1187
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  tooluniverse/tools/disease_target_score.py,sha256=uFzPikb6ZVPWS-6vqz4TbT0OT9QCGOrRsD2o_lLfebo,1615
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+ tooluniverse/tools/download_binary_file.py,sha256=7azsskuDQDkMya9JUJdcKKZVGhWZWDVn1zjODLVEjBg,1727
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+ tooluniverse/tools/download_file.py,sha256=GxOE41j9dpzUQm_kALML2QHZzlhzNtKR6NqzdgD7KCQ,2082
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+ tooluniverse/tools/download_text_content.py,sha256=16tGZ-jgnZwxiGmbeXLP_KV9ekRZ36fYR0m1CtiOmVI,1460
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  tooluniverse/tools/drugbank_filter_drugs_by_name.py,sha256=o3LPRLXm1aoTYhvs8GmIDxjKsJuD1EUrthEiOpuQgOA,1506
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  tooluniverse/tools/drugbank_full_search.py,sha256=FDRSvfQifpuZsCxOCq5Yz9PHa2VmwLJqyorLjCoZCRg,1887
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  tooluniverse/tools/drugbank_get_drug_basic_info_by_drug_name_or_drugbank_id.py,sha256=qpwwX6j9TQVQwv_YocaHbQLDnOsA56237rfRIxcv-qw,1829
@@ -625,6 +695,7 @@ tooluniverse/tools/drugbank_get_targets_by_drug_name_or_drugbank_id.py,sha256=5d
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  tooluniverse/tools/drugbank_links_search.py,sha256=zg3wghsCNlBHhks4neh3-H-72lL-sKTbWqY-UevczEQ,1888
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  tooluniverse/tools/drugbank_vocab_filter.py,sha256=YBV2_tH-9sVP2ZJJoSmO_rgn6pju6c1c1mJepUTchrA,1681
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  tooluniverse/tools/drugbank_vocab_search.py,sha256=-1gVZ51Ch8-TyDdRBORzGQ8AvmKMn2p-tLklNC6iWz8,1926
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+ tooluniverse/tools/dynamic_package_discovery.py,sha256=LSZO7Zjm0nbYrr3XbmGFzP5tJ9rUS6De-DDdRIUFnI8,1577
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  tooluniverse/tools/embedding_database_add.py,sha256=FOEsH48PlbhUxi7IQ5MqDnnZ9tzqoG1OeVrs7USV4LU,1713
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  tooluniverse/tools/embedding_database_load.py,sha256=QHrUsCbRDFLNHZA3_U8yoXbQEGS_iOQFvOHy9Z-ssD0,1700
@@ -632,6 +703,9 @@ tooluniverse/tools/embedding_database_search.py,sha256=CXu2KufHW0LwpgUwkjeWzE2XJ
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  tooluniverse/tools/embedding_sync_download.py,sha256=RqaPvVqe7BDLN2A35bX2hNR8f-IfIz0ED7g4Q_4eaNA,1732
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  tooluniverse/tools/enrichr_gene_enrichment_analysis.py,sha256=EBdJp_D9g9cB29Z56fx-_6iMZtTvahTgMQQY0FbhOts,1435
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+ tooluniverse/tools/ensembl_get_sequence.py,sha256=0VIUKV4Zynjs0XKeioJuxydNP96fYCmpX_TSfpkg-dg,1402
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+ tooluniverse/tools/ensembl_get_variants.py,sha256=MgeVHc4gjW6OuyjSOGMj2RkJVAxW6ZaaaQn_Jr8QhPE,1325
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+ tooluniverse/tools/ensembl_lookup_gene.py,sha256=o59b_dOlxp_0EJGReg5HB7Gne1ALvvOiXqPL7Xz6G_I,1218
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  tooluniverse/tools/europepmc_disease_target_score.py,sha256=9Z5ovTRUXOK4GoQF52dNVpih5TZ5VkGO0YEzwVP1_RM,1427
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  tooluniverse/tools/eva_disease_target_score.py,sha256=i8r9wWlQWsSfHnFg2NWmHv00S-nRxqj_s1szPIFpJqU,1403
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  tooluniverse/tools/eva_somatic_disease_target_score.py,sha256=Etek9rBFndFMy5aFCzPY_1XMZUySpU_ghQEJFzXEYEI,1435
@@ -639,6 +713,9 @@ tooluniverse/tools/expression_atlas_disease_target_score.py,sha256=NIAvFxBTvZdeH
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640
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  tooluniverse/tools/extract_clinical_trial_outcomes.py,sha256=ULBhLNb6zdRXABYhNeLgIQ7g4O9WWLXQIJE1LmD0pAc,1501
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  tooluniverse/tools/genomics_england_disease_target_score.py,sha256=yrUwuUSvp-8hs3180QqzBf6Zah3odYbqZRWaQi07r_I,1455
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+ tooluniverse/tools/geo_get_dataset_info.py,sha256=uZUwHIG7JJW2EMpi5pNF7FXvw0fM7YyfcPHVv7TPc5U,1202
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+ tooluniverse/tools/geo_get_sample_info.py,sha256=n27PkMo3EqtZth0BbREMRzZQw4CGRPFS0bqEDcU_Cpc,1212
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+ tooluniverse/tools/geo_search_datasets.py,sha256=n62Y8LjT7OMs5Uf_Y_LVCEL_OdzNOl_lbhc5BX7K8Qg,1894
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  tooluniverse/tools/get_HPO_ID_by_phenotype.py,sha256=lcj7oinJFDBMISM20CLbmNFCWOgwG4ti3m6ITBvpdT0,1313
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  tooluniverse/tools/get_albumentations_info.py,sha256=_Vfol_BKfbXz3YbSMOxNbxPNEvKRq3qN1FBUuuJyHQs,1067
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  tooluniverse/tools/get_altair_info.py,sha256=w3ROOSTj4hiCoPAh08yO1VM0hyVii_ufqw0ja3rpaWY,1047
@@ -720,7 +797,6 @@ tooluniverse/tools/get_hmmlearn_info.py,sha256=giwQiBsvjDfuRbglMf1Z4C3SSwGaGn7oo
720
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  tooluniverse/tools/get_holoviews_info.py,sha256=JjsRBl4k9lz-RRLa449uM0M8N3mLay1mlhG9R9wfhDc,1055
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  tooluniverse/tools/get_host_organism_by_pdb_id.py,sha256=kEpLRIaAiYdhyzX7DvS4I00L_xUTsjE61HVNwg3XYlU,1110
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  tooluniverse/tools/get_htmd_info.py,sha256=3XKpl1685Y1fhLhAOey3a3IP863hlOjDz02H6dv-qMw,1031
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- tooluniverse/tools/get_hyperopt_info.py,sha256=rtHSsP4rfekJtZfHt9dl4C6ps9Ldwx5HOy49m8USllQ,1230
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  tooluniverse/tools/get_igraph_info.py,sha256=xAL_Dia96LOChqAYMhAXeAd3LzsurBOKpik2ynAVZSo,1208
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  tooluniverse/tools/get_imageio_info.py,sha256=dx2ZeIeKFtyQGj1o1WifBEhOQbLcFZLbiRBSQ0j3PzI,1061
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  tooluniverse/tools/get_imbalanced_learn_info.py,sha256=g2YK-aQoROI4NJ18C6fRdurXJgMcMwLOXAYgGQAcvJg,1109
@@ -854,7 +930,7 @@ tooluniverse/tools/get_xarray_info.py,sha256=FM1FAINtYc6s_A9cW9kG77lph0b_EaJXIxD
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  tooluniverse/tools/get_xesmf_info.py,sha256=qGm7AFt024R71uv6KeXJP06gKzJKtLhn987ceOFKNN8,1029
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  tooluniverse/tools/get_zarr_info.py,sha256=e9x-YgEFXbk6S8qtR0tErs51FZQBLiuO4x5ywB9mBnI,1027
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- tooluniverse/tools/gnomAD_query_variant.py,sha256=KI031hxoq-KaYyg_LNVYqO4Ucxd9DJyoI2ea2cFKkno,1351
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+ tooluniverse/tools/gnomad_get_gene_constraints.py,sha256=DSqXANzjqY52_EE_4zKiWSlUPT97A2smZ1OdBNhGPTs,1272
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  tooluniverse/tools/gwas_get_association_by_id.py,sha256=peCKnGAww2wwVVSHSuWaUbXWZ6j4NIR4-8ZjG9_hW4c,1188
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  tooluniverse/tools/gwas_get_associations_for_snp.py,sha256=Zo1AmKB9Upj7BzPc6TVG8pRmq4sp7_UW9VVNeP0TD8s,1695
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  tooluniverse/tools/gwas_get_associations_for_study.py,sha256=AcobAhYhZ9BPKG9uVby7GREyu1V2zgq3-A0F4oNKfEo,1409
@@ -868,6 +944,11 @@ tooluniverse/tools/gwas_search_associations.py,sha256=Dq2WtU2XSQHtzdyHw_XliIzwl1
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  tooluniverse/tools/gwas_search_studies.py,sha256=xUhnrH5NmHLVs7hLTvyFjp7VKlXL1zZPgr_STwwM77M,2087
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  tooluniverse/tools/humanbase_ppi_analysis.py,sha256=OKOZZ4041sSNPjOur-0lvWXgUy3YCpqVUe6nam4sCMk,1990
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+ tooluniverse/tools/kegg_find_genes.py,sha256=0DMA4TBuvTDdWZMG_fXW3bWR7hlEEqhVkyxlj3hkKI4,1384
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+ tooluniverse/tools/kegg_get_gene_info.py,sha256=rO8g_W8vA-83zVjOeognygMnn1_51O2neQ-nPmGKWZ8,1202
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+ tooluniverse/tools/kegg_get_pathway_info.py,sha256=0N5Cts-KIvlHxj-DhDpmM3db369s3GmHxo3v_6DfjTs,1235
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+ tooluniverse/tools/kegg_list_organisms.py,sha256=Hx0YrXylXFX-shqPA3ogkZTOz9NwSFWA_wKnB7pFCDM,1109
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+ tooluniverse/tools/kegg_search_pathway.py,sha256=SXIfZJmnQT-3nvdfPYpDY9Cy0GvZWnx5azjxAviUXl0,1226
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  tooluniverse/tools/mesh_get_subjects_by_pharmacological_action.py,sha256=eLVnC6lRYXz3ZqJFktPKz7nmxtYK63fi7YRK_870asY,1801
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  tooluniverse/tools/mesh_get_subjects_by_subject_id.py,sha256=XLXVuc3hsQfi6nFDp-mOzt2APaGttGzeo_Ls1XBxL6k,1740
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  tooluniverse/tools/mesh_get_subjects_by_subject_name.py,sha256=bqVu881cEvkmuUXRfuDoL0LCH6Im9XPOXYS0UeDS6wI,1709
@@ -876,15 +957,26 @@ tooluniverse/tools/odphp_itemlist.py,sha256=WG6SfBH_NOoaGknMl4HuHX7RkfOOJliKuQys
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  tooluniverse/tools/odphp_myhealthfinder.py,sha256=63TT6qurOPvhWdhJ382m69-1Ry6reII6_6mr4lOXCOs,1666
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  tooluniverse/tools/odphp_outlink_fetch.py,sha256=0XEAlUab5QodcNNKlzN7uTj019crSyM-bkicdBnAQgA,1570
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  tooluniverse/tools/odphp_topicsearch.py,sha256=nqgAzxqrU1WE6BFZzsv73vtpJ-Zd57s5HpDe3CmMxbg,1723
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+ tooluniverse/tools/ols_find_similar_terms.py,sha256=qp28KuVfKsSQONg-BnyfwOqxRUsFujG1FI6NtdfCPM4,1516
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+ tooluniverse/tools/ols_get_ontology_info.py,sha256=RVUZj5AZSbplY6cQ_2GZfn9A4Dk5qgrF8OOCgkdDQUE,1228
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+ tooluniverse/tools/ols_get_term_ancestors.py,sha256=Q3uo5sq9CfpWRumhmMeogPb8kvLWSImMLQYKyUyEnGA,1700
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+ tooluniverse/tools/ols_get_term_children.py,sha256=HIaM3jq6hg7K3HryFP4unThQiJwjMDqL8vchhflm3WE,1688
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+ tooluniverse/tools/ols_get_term_info.py,sha256=IP569THfkZyQ7FLLmHjEL8JKKao13jotA8LcytT8h9w,1162
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+ tooluniverse/tools/ols_search_ontologies.py,sha256=qa5MMX0v5sEjIPMRC5c95nahIlav0zfULjEbV6Fu92c,1479
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+ tooluniverse/tools/ols_search_terms.py,sha256=PVuxTc5Uv1tksaQcqueaKcSmGqWH9d5vVnZUWNSM0HM,1836
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  tooluniverse/tools/openalex_literature_search.py,sha256=U2vc_hfb21FdZnJPkVoaykbH2zLIyQVXA86ApX_vWLg,2089
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+ tooluniverse/tools/python_code_executor.py,sha256=3yZWV37o6ycR8rEUwhhszQjIHvVQ5vVC7jR0Wk0n0ZE,2716
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+ tooluniverse/tools/python_script_runner.py,sha256=4NM85kgRTBTgEMVMiMmfP9Z2DFoqBYQOFEFNB_uyXS8,2636
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  tooluniverse/tools/reactome_disease_target_score.py,sha256=pSSPBCJjgyugexkzf8y5s9w44vJ87lKJlHxMftUe1_c,1423
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  tooluniverse/tools/search_clinical_trials.py,sha256=skW3aPZ1gXfjKJz8WkxGpt93XlHpnFc5oLIJbffUWc8,2044
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  tooluniverse/tools/visualize_molecule_2d.py,sha256=yaaGErioVPG5qMi8nR6DbZbojJVCUc2mDiO7icBG60U,2462
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  tooluniverse/tools/visualize_protein_structure_3d.py,sha256=ifTkgPvtNtvJ9q8d7zmSqSnd32oFmRcKkoO8p1SdVUU,2358
885
- tooluniverse-1.0.9.1.dist-info/licenses/LICENSE,sha256=0P0qDClpVzrnQUe3QAu7V-alszSBa-6hVHXyn9Xe60k,11351
886
- tooluniverse-1.0.9.1.dist-info/METADATA,sha256=UGIL_yWuVAeoD76bILuyj7YGBLqVg2h4cwwH2uaAywQ,21146
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- tooluniverse-1.0.9.1.dist-info/WHEEL,sha256=_zCd3N1l69ArxyTb8rzEoP9TpbYXkqRFSNOD5OuxnTs,91
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- tooluniverse-1.0.9.1.dist-info/entry_points.txt,sha256=SAdqP4tU4mMOtp1YWaOHTwnIHhnoiD1wmfKGlSfNSy0,647
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- tooluniverse-1.0.9.1.dist-info/top_level.txt,sha256=zZ8YeCJ5FAkEwdd_mxsFtSCQMBDgBdxrrmHo3RNBiWs,13
890
- tooluniverse-1.0.9.1.dist-info/RECORD,,
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+ tooluniverse/tools/web_api_documentation_search.py,sha256=AVw0w3LylreiKB6pCGooVUvZ1jydsuJnAzxD8HVf6vg,1707
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+ tooluniverse/tools/web_search.py,sha256=IjpR7Z6glY4DYX39YhSk6UP4bj5_f1LYAdr8WU9uaFk,1866
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+ tooluniverse-1.0.11.dist-info/licenses/LICENSE,sha256=0P0qDClpVzrnQUe3QAu7V-alszSBa-6hVHXyn9Xe60k,11351
978
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+ tooluniverse-1.0.11.dist-info/WHEEL,sha256=_zCd3N1l69ArxyTb8rzEoP9TpbYXkqRFSNOD5OuxnTs,91
980
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+ tooluniverse-1.0.11.dist-info/top_level.txt,sha256=zZ8YeCJ5FAkEwdd_mxsFtSCQMBDgBdxrrmHo3RNBiWs,13
982
+ tooluniverse-1.0.11.dist-info/RECORD,,