tooluniverse 1.0.6__py3-none-any.whl → 1.0.7__py3-none-any.whl

This diff represents the content of publicly available package versions that have been released to one of the supported registries. The information contained in this diff is provided for informational purposes only and reflects changes between package versions as they appear in their respective public registries.

Potentially problematic release.


This version of tooluniverse might be problematic. Click here for more details.

Files changed (823) hide show
  1. tooluniverse/__init__.py +31 -0
  2. tooluniverse/agentic_tool.py +40 -4
  3. tooluniverse/arxiv_tool.py +2 -6
  4. tooluniverse/base_tool.py +174 -25
  5. tooluniverse/biorxiv_tool.py +35 -16
  6. tooluniverse/cellosaurus_tool.py +1332 -0
  7. tooluniverse/compose_scripts/enhanced_multi_agent_literature_search.py +310 -0
  8. tooluniverse/compose_scripts/multi_agent_literature_search.py +794 -0
  9. tooluniverse/compose_scripts/tool_graph_generation.py +68 -35
  10. tooluniverse/compose_scripts/tool_metadata_generator.py +205 -105
  11. tooluniverse/compose_tool.py +93 -8
  12. tooluniverse/core_tool.py +46 -44
  13. tooluniverse/crossref_tool.py +89 -4
  14. tooluniverse/data/agentic_tools.json +1271 -1179
  15. tooluniverse/data/alphafold_tools.json +356 -105
  16. tooluniverse/data/arxiv_tools.json +88 -81
  17. tooluniverse/data/biorxiv_tools.json +69 -64
  18. tooluniverse/data/cellosaurus_tools.json +260 -0
  19. tooluniverse/data/chembl_tools.json +27 -12
  20. tooluniverse/data/clinicaltrials_gov_tools.json +377 -302
  21. tooluniverse/data/compose_tools.json +123 -16
  22. tooluniverse/data/core_tools.json +107 -99
  23. tooluniverse/data/crossref_tools.json +131 -63
  24. tooluniverse/data/dailymed_tools.json +17 -3
  25. tooluniverse/data/dataset_tools.json +1031 -588
  26. tooluniverse/data/dblp_tools.json +135 -64
  27. tooluniverse/data/disease_target_score_tools.json +20 -10
  28. tooluniverse/data/doaj_tools.json +133 -87
  29. tooluniverse/data/embedding_tools.json +362 -299
  30. tooluniverse/data/enrichr_tools.json +34 -27
  31. tooluniverse/data/europe_pmc_tools.json +108 -16
  32. tooluniverse/data/fatcat_tools.json +71 -66
  33. tooluniverse/data/fda_drug_adverse_event_tools.json +1061 -445
  34. tooluniverse/data/fda_drug_labeling_tools.json +6858 -6901
  35. tooluniverse/data/finder_tools.json +32 -37
  36. tooluniverse/data/gene_ontology_tools.json +19 -7
  37. tooluniverse/data/gwas_tools.json +1720 -959
  38. tooluniverse/data/hal_tools.json +69 -64
  39. tooluniverse/data/hpa_tools.json +53 -14
  40. tooluniverse/data/humanbase_tools.json +51 -43
  41. tooluniverse/data/idmap_tools.json +76 -70
  42. tooluniverse/data/literature_search_tools.json +306 -0
  43. tooluniverse/data/mcp_client_tools_example.json +122 -107
  44. tooluniverse/data/medlineplus_tools.json +50 -10
  45. tooluniverse/data/medrxiv_tools.json +69 -64
  46. tooluniverse/data/molecule_2d_tools.json +134 -0
  47. tooluniverse/data/molecule_3d_tools.json +164 -0
  48. tooluniverse/data/monarch_tools.json +112 -110
  49. tooluniverse/data/odphp_tools.json +389 -119
  50. tooluniverse/data/openaire_tools.json +89 -79
  51. tooluniverse/data/openalex_tools.json +100 -31
  52. tooluniverse/data/opentarget_tools.json +1457 -1372
  53. tooluniverse/data/osf_preprints_tools.json +77 -73
  54. tooluniverse/data/packages/bioinformatics_core_tools.json +40 -10
  55. tooluniverse/data/packages/cheminformatics_tools.json +20 -5
  56. tooluniverse/data/packages/genomics_tools.json +36 -9
  57. tooluniverse/data/packages/machine_learning_tools.json +36 -9
  58. tooluniverse/data/packages/scientific_computing_tools.json +20 -5
  59. tooluniverse/data/packages/single_cell_tools.json +20 -5
  60. tooluniverse/data/packages/structural_biology_tools.json +16 -4
  61. tooluniverse/data/packages/visualization_tools.json +20 -5
  62. tooluniverse/data/pmc_tools.json +111 -103
  63. tooluniverse/data/protein_structure_3d_tools.json +138 -0
  64. tooluniverse/data/pubchem_tools.json +37 -12
  65. tooluniverse/data/pubmed_tools.json +126 -58
  66. tooluniverse/data/pubtator_tools.json +68 -60
  67. tooluniverse/data/rcsb_pdb_tools.json +1532 -1221
  68. tooluniverse/data/semantic_scholar_tools.json +55 -22
  69. tooluniverse/data/special_tools.json +8 -6
  70. tooluniverse/data/tool_composition_tools.json +112 -82
  71. tooluniverse/data/unified_guideline_tools.json +707 -0
  72. tooluniverse/data/url_fetch_tools.json +102 -82
  73. tooluniverse/data/uspto_tools.json +49 -30
  74. tooluniverse/data/wikidata_sparql_tools.json +42 -39
  75. tooluniverse/data/xml_tools.json +3274 -3113
  76. tooluniverse/data/zenodo_tools.json +84 -76
  77. tooluniverse/dblp_tool.py +76 -6
  78. tooluniverse/default_config.py +13 -0
  79. tooluniverse/doaj_tool.py +76 -17
  80. tooluniverse/doctor.py +48 -0
  81. tooluniverse/europe_pmc_tool.py +132 -17
  82. tooluniverse/exceptions.py +170 -0
  83. tooluniverse/execute_function.py +784 -362
  84. tooluniverse/fatcat_tool.py +0 -1
  85. tooluniverse/generate_tools.py +198 -0
  86. tooluniverse/hal_tool.py +1 -1
  87. tooluniverse/llm_clients.py +101 -124
  88. tooluniverse/mcp_tool_registry.py +4 -1
  89. tooluniverse/medrxiv_tool.py +32 -13
  90. tooluniverse/memory_manager.py +166 -0
  91. tooluniverse/molecule_2d_tool.py +274 -0
  92. tooluniverse/molecule_3d_tool.py +441 -0
  93. tooluniverse/odphp_tool.py +49 -14
  94. tooluniverse/openaire_tool.py +5 -20
  95. tooluniverse/openalex_tool.py +34 -0
  96. tooluniverse/osf_preprints_tool.py +1 -1
  97. tooluniverse/pmc_tool.py +54 -56
  98. tooluniverse/protein_structure_3d_tool.py +295 -0
  99. tooluniverse/pubmed_tool.py +69 -6
  100. tooluniverse/remote/boltz/boltz_mcp_server.py +3 -1
  101. tooluniverse/remote/uspto_downloader/uspto_downloader_mcp_server.py +3 -1
  102. tooluniverse/semantic_scholar_tool.py +40 -10
  103. tooluniverse/smcp.py +140 -205
  104. tooluniverse/smcp_server.py +97 -55
  105. tooluniverse/tool_registry.py +35 -3
  106. tooluniverse/tools/ADMETAI_predict_BBB_penetrance.py +46 -0
  107. tooluniverse/tools/ADMETAI_predict_CYP_interactions.py +46 -0
  108. tooluniverse/tools/ADMETAI_predict_bioavailability.py +46 -0
  109. tooluniverse/tools/ADMETAI_predict_clearance_distribution.py +49 -0
  110. tooluniverse/tools/ADMETAI_predict_nuclear_receptor_activity.py +49 -0
  111. tooluniverse/tools/ADMETAI_predict_physicochemical_properties.py +49 -0
  112. tooluniverse/tools/ADMETAI_predict_solubility_lipophilicity_hydration.py +49 -0
  113. tooluniverse/tools/ADMETAI_predict_stress_response.py +46 -0
  114. tooluniverse/tools/ADMETAI_predict_toxicity.py +46 -0
  115. tooluniverse/tools/AdvancedCodeQualityAnalyzer.py +63 -0
  116. tooluniverse/tools/AdverseEventICDMapper.py +46 -0
  117. tooluniverse/tools/AdverseEventPredictionQuestionGenerator.py +52 -0
  118. tooluniverse/tools/AdverseEventPredictionQuestionGeneratorWithContext.py +59 -0
  119. tooluniverse/tools/ArXiv_search_papers.py +63 -0
  120. tooluniverse/tools/ArgumentDescriptionOptimizer.py +55 -0
  121. tooluniverse/tools/BioRxiv_search_preprints.py +52 -0
  122. tooluniverse/tools/BiomarkerDiscoveryWorkflow.py +55 -0
  123. tooluniverse/tools/CORE_search_papers.py +67 -0
  124. tooluniverse/tools/CallAgent.py +46 -0
  125. tooluniverse/tools/ChEMBL_search_similar_molecules.py +59 -0
  126. tooluniverse/tools/CodeOptimizer.py +55 -0
  127. tooluniverse/tools/CodeQualityAnalyzer.py +71 -0
  128. tooluniverse/tools/ComprehensiveDrugDiscoveryPipeline.py +49 -0
  129. tooluniverse/tools/Crossref_search_works.py +55 -0
  130. tooluniverse/tools/DBLP_search_publications.py +52 -0
  131. tooluniverse/tools/DOAJ_search_articles.py +55 -0
  132. tooluniverse/tools/DailyMed_get_spl_by_setid.py +52 -0
  133. tooluniverse/tools/DailyMed_search_spls.py +79 -0
  134. tooluniverse/tools/DataAnalysisValidityReviewer.py +49 -0
  135. tooluniverse/tools/DescriptionAnalyzer.py +55 -0
  136. tooluniverse/tools/DescriptionQualityEvaluator.py +59 -0
  137. tooluniverse/tools/DomainExpertValidator.py +63 -0
  138. tooluniverse/tools/DrugSafetyAnalyzer.py +59 -0
  139. tooluniverse/tools/EthicalComplianceReviewer.py +49 -0
  140. tooluniverse/tools/EuropePMC_Guidelines_Search.py +52 -0
  141. tooluniverse/tools/EuropePMC_search_articles.py +52 -0
  142. tooluniverse/tools/ExperimentalDesignScorer.py +55 -0
  143. tooluniverse/tools/FAERS_count_additive_administration_routes.py +52 -0
  144. tooluniverse/tools/FAERS_count_additive_adverse_reactions.py +71 -0
  145. tooluniverse/tools/FAERS_count_additive_event_reports_by_country.py +63 -0
  146. tooluniverse/tools/FAERS_count_additive_reaction_outcomes.py +63 -0
  147. tooluniverse/tools/FAERS_count_additive_reports_by_reporter_country.py +63 -0
  148. tooluniverse/tools/FAERS_count_additive_seriousness_classification.py +63 -0
  149. tooluniverse/tools/FAERS_count_country_by_drug_event.py +63 -0
  150. tooluniverse/tools/FAERS_count_death_related_by_drug.py +49 -0
  151. tooluniverse/tools/FAERS_count_drug_routes_by_event.py +52 -0
  152. tooluniverse/tools/FAERS_count_drugs_by_drug_event.py +63 -0
  153. tooluniverse/tools/FAERS_count_outcomes_by_drug_event.py +63 -0
  154. tooluniverse/tools/FAERS_count_patient_age_distribution.py +49 -0
  155. tooluniverse/tools/FAERS_count_reactions_by_drug_event.py +71 -0
  156. tooluniverse/tools/FAERS_count_reportercountry_by_drug_event.py +63 -0
  157. tooluniverse/tools/FAERS_count_seriousness_by_drug_event.py +63 -0
  158. tooluniverse/tools/FDA_get_abuse_dependence_info_by_drug_name.py +55 -0
  159. tooluniverse/tools/FDA_get_abuse_info_by_drug_name.py +55 -0
  160. tooluniverse/tools/FDA_get_accessories_info_by_drug_name.py +55 -0
  161. tooluniverse/tools/FDA_get_active_ingredient_info_by_drug_name.py +55 -0
  162. tooluniverse/tools/FDA_get_adverse_reactions_by_drug_name.py +55 -0
  163. tooluniverse/tools/FDA_get_alarms_by_drug_name.py +55 -0
  164. tooluniverse/tools/FDA_get_animal_pharmacology_info_by_drug_name.py +55 -0
  165. tooluniverse/tools/FDA_get_assembly_installation_info_by_drug_name.py +55 -0
  166. tooluniverse/tools/FDA_get_boxed_warning_info_by_drug_name.py +55 -0
  167. tooluniverse/tools/FDA_get_brand_name_generic_name.py +52 -0
  168. tooluniverse/tools/FDA_get_calibration_instructions_by_drug_name.py +55 -0
  169. tooluniverse/tools/FDA_get_carcinogenic_mutagenic_fertility_by_drug_name.py +55 -0
  170. tooluniverse/tools/FDA_get_child_safety_info_by_drug_name.py +55 -0
  171. tooluniverse/tools/FDA_get_clinical_pharmacology_by_drug_name.py +55 -0
  172. tooluniverse/tools/FDA_get_clinical_studies_info_by_drug_name.py +55 -0
  173. tooluniverse/tools/FDA_get_contact_for_questions_info_by_drug_name.py +55 -0
  174. tooluniverse/tools/FDA_get_contraindications_by_drug_name.py +55 -0
  175. tooluniverse/tools/FDA_get_controlled_substance_DEA_schedule_info_by_drug_name.py +55 -0
  176. tooluniverse/tools/FDA_get_dear_health_care_provider_letter_info_by_drug_name.py +55 -0
  177. tooluniverse/tools/FDA_get_dependence_info_by_drug_name.py +55 -0
  178. tooluniverse/tools/FDA_get_disposal_info_by_drug_name.py +55 -0
  179. tooluniverse/tools/FDA_get_do_not_use_info_by_drug_name.py +55 -0
  180. tooluniverse/tools/FDA_get_document_id_by_drug_name.py +55 -0
  181. tooluniverse/tools/FDA_get_dosage_and_storage_information_by_drug_name.py +55 -0
  182. tooluniverse/tools/FDA_get_dosage_forms_and_strengths_by_drug_name.py +55 -0
  183. tooluniverse/tools/FDA_get_drug_generic_name.py +46 -0
  184. tooluniverse/tools/FDA_get_drug_interactions_by_drug_name.py +55 -0
  185. tooluniverse/tools/FDA_get_drug_name_by_SPL_ID.py +55 -0
  186. tooluniverse/tools/FDA_get_drug_name_by_adverse_reaction.py +59 -0
  187. tooluniverse/tools/FDA_get_drug_name_by_calibration_instructions.py +59 -0
  188. tooluniverse/tools/FDA_get_drug_name_by_dependence_info.py +59 -0
  189. tooluniverse/tools/FDA_get_drug_name_by_document_id.py +55 -0
  190. tooluniverse/tools/FDA_get_drug_name_by_dosage_info.py +55 -0
  191. tooluniverse/tools/FDA_get_drug_name_by_environmental_warning.py +59 -0
  192. tooluniverse/tools/FDA_get_drug_name_by_inactive_ingredient.py +59 -0
  193. tooluniverse/tools/FDA_get_drug_name_by_info_on_conditions_for_doctor_consultation.py +55 -0
  194. tooluniverse/tools/FDA_get_drug_name_by_labor_and_delivery_info.py +59 -0
  195. tooluniverse/tools/FDA_get_drug_name_by_microbiology.py +59 -0
  196. tooluniverse/tools/FDA_get_drug_name_by_other_safety_info.py +55 -0
  197. tooluniverse/tools/FDA_get_drug_name_by_pharmacodynamics.py +59 -0
  198. tooluniverse/tools/FDA_get_drug_name_by_pharmacogenomics.py +59 -0
  199. tooluniverse/tools/FDA_get_drug_name_by_precautions.py +55 -0
  200. tooluniverse/tools/FDA_get_drug_name_by_pregnancy_or_breastfeeding_info.py +59 -0
  201. tooluniverse/tools/FDA_get_drug_name_by_principal_display_panel.py +59 -0
  202. tooluniverse/tools/FDA_get_drug_name_by_reference.py +55 -0
  203. tooluniverse/tools/FDA_get_drug_name_by_set_id.py +55 -0
  204. tooluniverse/tools/FDA_get_drug_name_by_stop_use_info.py +55 -0
  205. tooluniverse/tools/FDA_get_drug_name_by_storage_and_handling_info.py +55 -0
  206. tooluniverse/tools/FDA_get_drug_name_by_warnings.py +55 -0
  207. tooluniverse/tools/FDA_get_drug_name_from_patient_package_insert.py +59 -0
  208. tooluniverse/tools/FDA_get_drug_names_by_abuse_dependence_info.py +55 -0
  209. tooluniverse/tools/FDA_get_drug_names_by_abuse_info.py +63 -0
  210. tooluniverse/tools/FDA_get_drug_names_by_accessories.py +63 -0
  211. tooluniverse/tools/FDA_get_drug_names_by_active_ingredient.py +63 -0
  212. tooluniverse/tools/FDA_get_drug_names_by_alarm.py +63 -0
  213. tooluniverse/tools/FDA_get_drug_names_by_animal_pharmacology_info.py +63 -0
  214. tooluniverse/tools/FDA_get_drug_names_by_application_number_NDC_number.py +59 -0
  215. tooluniverse/tools/FDA_get_drug_names_by_assembly_installation_info.py +63 -0
  216. tooluniverse/tools/FDA_get_drug_names_by_boxed_warning.py +63 -0
  217. tooluniverse/tools/FDA_get_drug_names_by_child_safety_info.py +63 -0
  218. tooluniverse/tools/FDA_get_drug_names_by_clinical_pharmacology.py +63 -0
  219. tooluniverse/tools/FDA_get_drug_names_by_clinical_studies.py +63 -0
  220. tooluniverse/tools/FDA_get_drug_names_by_consulting_doctor_pharmacist_info.py +63 -0
  221. tooluniverse/tools/FDA_get_drug_names_by_contraindications.py +63 -0
  222. tooluniverse/tools/FDA_get_drug_names_by_controlled_substance_DEA_schedule.py +63 -0
  223. tooluniverse/tools/FDA_get_drug_names_by_dear_health_care_provider_letter_info.py +63 -0
  224. tooluniverse/tools/FDA_get_drug_names_by_disposal_info.py +63 -0
  225. tooluniverse/tools/FDA_get_drug_names_by_dosage_forms_and_strengths_info.py +63 -0
  226. tooluniverse/tools/FDA_get_drug_names_by_drug_interactions.py +63 -0
  227. tooluniverse/tools/FDA_get_drug_names_by_effective_time.py +63 -0
  228. tooluniverse/tools/FDA_get_drug_names_by_food_safety_warnings.py +63 -0
  229. tooluniverse/tools/FDA_get_drug_names_by_general_precautions.py +63 -0
  230. tooluniverse/tools/FDA_get_drug_names_by_geriatric_use.py +63 -0
  231. tooluniverse/tools/FDA_get_drug_names_by_health_claim.py +63 -0
  232. tooluniverse/tools/FDA_get_drug_names_by_indication.py +55 -0
  233. tooluniverse/tools/FDA_get_drug_names_by_info_for_nursing_mothers.py +63 -0
  234. tooluniverse/tools/FDA_get_drug_names_by_information_for_owners_or_caregivers.py +63 -0
  235. tooluniverse/tools/FDA_get_drug_names_by_ingredient.py +63 -0
  236. tooluniverse/tools/FDA_get_drug_names_by_instructions_for_use.py +63 -0
  237. tooluniverse/tools/FDA_get_drug_names_by_lab_test_interference.py +63 -0
  238. tooluniverse/tools/FDA_get_drug_names_by_lab_tests.py +63 -0
  239. tooluniverse/tools/FDA_get_drug_names_by_mechanism_of_action.py +63 -0
  240. tooluniverse/tools/FDA_get_drug_names_by_medication_guide.py +63 -0
  241. tooluniverse/tools/FDA_get_drug_names_by_nonclinical_toxicology_info.py +63 -0
  242. tooluniverse/tools/FDA_get_drug_names_by_nonteratogenic_effects.py +63 -0
  243. tooluniverse/tools/FDA_get_drug_names_by_overdosage_info.py +63 -0
  244. tooluniverse/tools/FDA_get_drug_names_by_pediatric_use.py +63 -0
  245. tooluniverse/tools/FDA_get_drug_names_by_pharmacokinetics.py +63 -0
  246. tooluniverse/tools/FDA_get_drug_names_by_population_use.py +63 -0
  247. tooluniverse/tools/FDA_get_drug_names_by_pregnancy_effects_info.py +63 -0
  248. tooluniverse/tools/FDA_get_drug_names_by_residue_warning.py +63 -0
  249. tooluniverse/tools/FDA_get_drug_names_by_risk.py +63 -0
  250. tooluniverse/tools/FDA_get_drug_names_by_route.py +63 -0
  251. tooluniverse/tools/FDA_get_drug_names_by_safe_handling_warning.py +63 -0
  252. tooluniverse/tools/FDA_get_drug_names_by_safety_summary.py +63 -0
  253. tooluniverse/tools/FDA_get_drug_names_by_spl_indexing_data_elements.py +63 -0
  254. tooluniverse/tools/FDA_get_drug_names_by_teratogenic_effects.py +63 -0
  255. tooluniverse/tools/FDA_get_drug_names_by_user_safety_warning.py +63 -0
  256. tooluniverse/tools/FDA_get_drug_names_by_warnings_and_cautions.py +63 -0
  257. tooluniverse/tools/FDA_get_drugs_by_carcinogenic_mutagenic_fertility.py +63 -0
  258. tooluniverse/tools/FDA_get_effective_time_by_drug_name.py +55 -0
  259. tooluniverse/tools/FDA_get_environmental_warning_by_drug_name.py +55 -0
  260. tooluniverse/tools/FDA_get_general_precautions_by_drug_name.py +55 -0
  261. tooluniverse/tools/FDA_get_geriatric_use_info_by_drug_name.py +55 -0
  262. tooluniverse/tools/FDA_get_health_claims_by_drug_name.py +55 -0
  263. tooluniverse/tools/FDA_get_inactive_ingredient_info_by_drug_name.py +55 -0
  264. tooluniverse/tools/FDA_get_indications_by_drug_name.py +55 -0
  265. tooluniverse/tools/FDA_get_info_for_nursing_mothers_by_drug_name.py +55 -0
  266. tooluniverse/tools/FDA_get_info_for_patients_by_drug_name.py +55 -0
  267. tooluniverse/tools/FDA_get_info_on_conditions_for_doctor_consultation_by_drug_name.py +55 -0
  268. tooluniverse/tools/FDA_get_info_on_consulting_doctor_pharmacist_by_drug_name.py +55 -0
  269. tooluniverse/tools/FDA_get_information_for_owners_or_caregivers_by_drug_name.py +55 -0
  270. tooluniverse/tools/FDA_get_ingredients_by_drug_name.py +55 -0
  271. tooluniverse/tools/FDA_get_instructions_for_use_by_drug_name.py +55 -0
  272. tooluniverse/tools/FDA_get_lab_test_interference_info_by_drug_name.py +55 -0
  273. tooluniverse/tools/FDA_get_lab_tests_by_drug_name.py +55 -0
  274. tooluniverse/tools/FDA_get_labor_and_delivery_info_by_drug_name.py +55 -0
  275. tooluniverse/tools/FDA_get_manufacturer_name_NDC_number_by_drug_name.py +55 -0
  276. tooluniverse/tools/FDA_get_mechanism_of_action_by_drug_name.py +55 -0
  277. tooluniverse/tools/FDA_get_medication_guide_info_by_drug_name.py +55 -0
  278. tooluniverse/tools/FDA_get_microbiology_info_by_drug_name.py +55 -0
  279. tooluniverse/tools/FDA_get_nonclinical_toxicology_info_by_drug_name.py +55 -0
  280. tooluniverse/tools/FDA_get_nonteratogenic_effects_by_drug_name.py +55 -0
  281. tooluniverse/tools/FDA_get_other_safety_info_by_drug_name.py +55 -0
  282. tooluniverse/tools/FDA_get_overdosage_info_by_drug_name.py +55 -0
  283. tooluniverse/tools/FDA_get_patient_package_insert_from_drug_name.py +55 -0
  284. tooluniverse/tools/FDA_get_pediatric_use_info_by_drug_name.py +55 -0
  285. tooluniverse/tools/FDA_get_pharmacodynamics_by_drug_name.py +55 -0
  286. tooluniverse/tools/FDA_get_pharmacogenomics_info_by_drug_name.py +55 -0
  287. tooluniverse/tools/FDA_get_pharmacokinetics_by_drug_name.py +55 -0
  288. tooluniverse/tools/FDA_get_population_use_info_by_drug_name.py +55 -0
  289. tooluniverse/tools/FDA_get_precautions_by_drug_name.py +55 -0
  290. tooluniverse/tools/FDA_get_pregnancy_effects_info_by_drug_name.py +55 -0
  291. tooluniverse/tools/FDA_get_pregnancy_or_breastfeeding_info_by_drug_name.py +55 -0
  292. tooluniverse/tools/FDA_get_principal_display_panel_by_drug_name.py +55 -0
  293. tooluniverse/tools/FDA_get_purpose_info_by_drug_name.py +55 -0
  294. tooluniverse/tools/FDA_get_recent_changes_by_drug_name.py +55 -0
  295. tooluniverse/tools/FDA_get_reference_info_by_drug_name.py +55 -0
  296. tooluniverse/tools/FDA_get_residue_warning_by_drug_name.py +55 -0
  297. tooluniverse/tools/FDA_get_risk_info_by_drug_name.py +55 -0
  298. tooluniverse/tools/FDA_get_route_info_by_drug_name.py +55 -0
  299. tooluniverse/tools/FDA_get_safe_handling_warnings_by_drug_name.py +55 -0
  300. tooluniverse/tools/FDA_get_safety_summary_by_drug_name.py +55 -0
  301. tooluniverse/tools/FDA_get_spl_indexing_data_elements_by_drug_name.py +55 -0
  302. tooluniverse/tools/FDA_get_spl_unclassified_section_by_drug_name.py +55 -0
  303. tooluniverse/tools/FDA_get_stop_use_info_by_drug_name.py +55 -0
  304. tooluniverse/tools/FDA_get_storage_and_handling_info_by_drug_name.py +55 -0
  305. tooluniverse/tools/FDA_get_teratogenic_effects_by_drug_name.py +55 -0
  306. tooluniverse/tools/FDA_get_user_safety_warning_by_drug_names.py +55 -0
  307. tooluniverse/tools/FDA_get_warnings_and_cautions_by_drug_name.py +55 -0
  308. tooluniverse/tools/FDA_get_warnings_by_drug_name.py +55 -0
  309. tooluniverse/tools/FDA_get_when_using_info.py +55 -0
  310. tooluniverse/tools/FDA_retrieve_device_use_by_drug_name.py +55 -0
  311. tooluniverse/tools/FDA_retrieve_drug_name_by_device_use.py +59 -0
  312. tooluniverse/tools/FDA_retrieve_drug_names_by_patient_medication_info.py +55 -0
  313. tooluniverse/tools/FDA_retrieve_patient_medication_info_by_drug_name.py +55 -0
  314. tooluniverse/tools/Fatcat_search_scholar.py +52 -0
  315. tooluniverse/tools/Finish.py +44 -0
  316. tooluniverse/tools/GO_get_annotations_for_gene.py +46 -0
  317. tooluniverse/tools/GO_get_genes_for_term.py +55 -0
  318. tooluniverse/tools/GO_get_term_by_id.py +46 -0
  319. tooluniverse/tools/GO_get_term_details.py +46 -0
  320. tooluniverse/tools/GO_search_terms.py +46 -0
  321. tooluniverse/tools/HAL_search_archive.py +52 -0
  322. tooluniverse/tools/HPA_get_biological_processes_by_gene.py +52 -0
  323. tooluniverse/tools/HPA_get_cancer_prognostics_by_gene.py +49 -0
  324. tooluniverse/tools/HPA_get_comparative_expression_by_gene_and_cellline.py +52 -0
  325. tooluniverse/tools/HPA_get_comprehensive_gene_details_by_ensembl_id.py +63 -0
  326. tooluniverse/tools/HPA_get_contextual_biological_process_analysis.py +52 -0
  327. tooluniverse/tools/HPA_get_disease_expression_by_gene_tissue_disease.py +59 -0
  328. tooluniverse/tools/HPA_get_gene_basic_info_by_ensembl_id.py +49 -0
  329. tooluniverse/tools/HPA_get_gene_tsv_data_by_ensembl_id.py +49 -0
  330. tooluniverse/tools/HPA_get_protein_interactions_by_gene.py +49 -0
  331. tooluniverse/tools/HPA_get_rna_expression_by_source.py +59 -0
  332. tooluniverse/tools/HPA_get_rna_expression_in_specific_tissues.py +52 -0
  333. tooluniverse/tools/HPA_get_subcellular_location.py +46 -0
  334. tooluniverse/tools/HPA_search_genes_by_query.py +49 -0
  335. tooluniverse/tools/HypothesisGenerator.py +63 -0
  336. tooluniverse/tools/LabelGenerator.py +67 -0
  337. tooluniverse/tools/LiteratureContextReviewer.py +55 -0
  338. tooluniverse/tools/LiteratureSearchTool.py +49 -0
  339. tooluniverse/tools/MedRxiv_search_preprints.py +52 -0
  340. tooluniverse/tools/MedicalLiteratureReviewer.py +71 -0
  341. tooluniverse/tools/MedicalTermNormalizer.py +46 -0
  342. tooluniverse/tools/MedlinePlus_connect_lookup_by_code.py +67 -0
  343. tooluniverse/tools/MedlinePlus_get_genetics_condition_by_name.py +52 -0
  344. tooluniverse/tools/MedlinePlus_get_genetics_gene_by_name.py +52 -0
  345. tooluniverse/tools/MedlinePlus_get_genetics_index.py +44 -0
  346. tooluniverse/tools/MedlinePlus_search_topics_by_keyword.py +55 -0
  347. tooluniverse/tools/MethodologyRigorReviewer.py +49 -0
  348. tooluniverse/tools/MultiAgentLiteratureSearch.py +59 -0
  349. tooluniverse/tools/NICE_Clinical_Guidelines_Search.py +52 -0
  350. tooluniverse/tools/NICE_Guideline_Full_Text.py +46 -0
  351. tooluniverse/tools/NoveltySignificanceReviewer.py +59 -0
  352. tooluniverse/tools/OSF_search_preprints.py +59 -0
  353. tooluniverse/tools/OSL_get_efo_id_by_disease_name.py +46 -0
  354. tooluniverse/tools/OpenAIRE_search_publications.py +55 -0
  355. tooluniverse/tools/OpenAlex_Guidelines_Search.py +63 -0
  356. tooluniverse/tools/OpenTargets_drug_pharmacogenomics_data.py +52 -0
  357. tooluniverse/tools/OpenTargets_get_approved_indications_by_drug_chemblId.py +49 -0
  358. tooluniverse/tools/OpenTargets_get_associated_diseases_by_drug_chemblId.py +49 -0
  359. tooluniverse/tools/OpenTargets_get_associated_drugs_by_disease_efoId.py +52 -0
  360. tooluniverse/tools/OpenTargets_get_associated_drugs_by_target_ensemblID.py +55 -0
  361. tooluniverse/tools/OpenTargets_get_associated_phenotypes_by_disease_efoId.py +49 -0
  362. tooluniverse/tools/OpenTargets_get_associated_targets_by_disease_efoId.py +49 -0
  363. tooluniverse/tools/OpenTargets_get_associated_targets_by_drug_chemblId.py +49 -0
  364. tooluniverse/tools/OpenTargets_get_biological_mouse_models_by_ensemblID.py +49 -0
  365. tooluniverse/tools/OpenTargets_get_chemical_probes_by_target_ensemblID.py +49 -0
  366. tooluniverse/tools/OpenTargets_get_disease_ancestors_parents_by_efoId.py +49 -0
  367. tooluniverse/tools/OpenTargets_get_disease_descendants_children_by_efoId.py +49 -0
  368. tooluniverse/tools/OpenTargets_get_disease_description_by_efoId.py +49 -0
  369. tooluniverse/tools/OpenTargets_get_disease_id_description_by_name.py +49 -0
  370. tooluniverse/tools/OpenTargets_get_disease_ids_by_efoId.py +46 -0
  371. tooluniverse/tools/OpenTargets_get_disease_ids_by_name.py +46 -0
  372. tooluniverse/tools/OpenTargets_get_disease_locations_by_efoId.py +49 -0
  373. tooluniverse/tools/OpenTargets_get_disease_synonyms_by_efoId.py +49 -0
  374. tooluniverse/tools/OpenTargets_get_disease_therapeutic_areas_by_efoId.py +49 -0
  375. tooluniverse/tools/OpenTargets_get_diseases_phenotypes_by_target_ensembl.py +49 -0
  376. tooluniverse/tools/OpenTargets_get_drug_adverse_events_by_chemblId.py +52 -0
  377. tooluniverse/tools/OpenTargets_get_drug_approval_status_by_chemblId.py +49 -0
  378. tooluniverse/tools/OpenTargets_get_drug_chembId_by_generic_name.py +49 -0
  379. tooluniverse/tools/OpenTargets_get_drug_description_by_chemblId.py +49 -0
  380. tooluniverse/tools/OpenTargets_get_drug_id_description_by_name.py +49 -0
  381. tooluniverse/tools/OpenTargets_get_drug_indications_by_chemblId.py +49 -0
  382. tooluniverse/tools/OpenTargets_get_drug_mechanisms_of_action_by_chemblId.py +49 -0
  383. tooluniverse/tools/OpenTargets_get_drug_synonyms_by_chemblId.py +49 -0
  384. tooluniverse/tools/OpenTargets_get_drug_trade_names_by_chemblId.py +49 -0
  385. tooluniverse/tools/OpenTargets_get_drug_warnings_by_chemblId.py +49 -0
  386. tooluniverse/tools/OpenTargets_get_drug_withdrawn_blackbox_status_by_chemblId.py +49 -0
  387. tooluniverse/tools/OpenTargets_get_gene_ontology_terms_by_goID.py +49 -0
  388. tooluniverse/tools/OpenTargets_get_known_drugs_by_drug_chemblId.py +49 -0
  389. tooluniverse/tools/OpenTargets_get_parent_child_molecules_by_drug_chembl_ID.py +49 -0
  390. tooluniverse/tools/OpenTargets_get_publications_by_disease_efoId.py +71 -0
  391. tooluniverse/tools/OpenTargets_get_publications_by_drug_chemblId.py +71 -0
  392. tooluniverse/tools/OpenTargets_get_publications_by_target_ensemblID.py +71 -0
  393. tooluniverse/tools/OpenTargets_get_similar_entities_by_disease_efoId.py +55 -0
  394. tooluniverse/tools/OpenTargets_get_similar_entities_by_drug_chemblId.py +55 -0
  395. tooluniverse/tools/OpenTargets_get_similar_entities_by_target_ensemblID.py +55 -0
  396. tooluniverse/tools/OpenTargets_get_target_classes_by_ensemblID.py +49 -0
  397. tooluniverse/tools/OpenTargets_get_target_constraint_info_by_ensemblID.py +49 -0
  398. tooluniverse/tools/OpenTargets_get_target_enabling_packages_by_ensemblID.py +49 -0
  399. tooluniverse/tools/OpenTargets_get_target_gene_ontology_by_ensemblID.py +49 -0
  400. tooluniverse/tools/OpenTargets_get_target_genomic_location_by_ensemblID.py +49 -0
  401. tooluniverse/tools/OpenTargets_get_target_homologues_by_ensemblID.py +49 -0
  402. tooluniverse/tools/OpenTargets_get_target_id_description_by_name.py +49 -0
  403. tooluniverse/tools/OpenTargets_get_target_interactions_by_ensemblID.py +52 -0
  404. tooluniverse/tools/OpenTargets_get_target_safety_profile_by_ensemblID.py +49 -0
  405. tooluniverse/tools/OpenTargets_get_target_subcellular_locations_by_ensemblID.py +49 -0
  406. tooluniverse/tools/OpenTargets_get_target_synonyms_by_ensemblID.py +49 -0
  407. tooluniverse/tools/OpenTargets_get_target_tractability_by_ensemblID.py +49 -0
  408. tooluniverse/tools/OpenTargets_map_any_disease_id_to_all_other_ids.py +49 -0
  409. tooluniverse/tools/OpenTargets_multi_entity_search_by_query_string.py +59 -0
  410. tooluniverse/tools/OpenTargets_search_category_counts_by_query_string.py +49 -0
  411. tooluniverse/tools/OpenTargets_target_disease_evidence.py +52 -0
  412. tooluniverse/tools/OutputSummarizationComposer.py +71 -0
  413. tooluniverse/tools/PMC_search_papers.py +67 -0
  414. tooluniverse/tools/ProtocolOptimizer.py +49 -0
  415. tooluniverse/tools/PubChem_get_CID_by_SMILES.py +46 -0
  416. tooluniverse/tools/PubChem_get_CID_by_compound_name.py +46 -0
  417. tooluniverse/tools/PubChem_get_associated_patents_by_CID.py +46 -0
  418. tooluniverse/tools/PubChem_get_compound_2D_image_by_CID.py +52 -0
  419. tooluniverse/tools/PubChem_get_compound_properties_by_CID.py +46 -0
  420. tooluniverse/tools/PubChem_get_compound_synonyms_by_CID.py +46 -0
  421. tooluniverse/tools/PubChem_get_compound_xrefs_by_CID.py +52 -0
  422. tooluniverse/tools/PubChem_search_compounds_by_similarity.py +52 -0
  423. tooluniverse/tools/PubChem_search_compounds_by_substructure.py +49 -0
  424. tooluniverse/tools/PubMed_Guidelines_Search.py +55 -0
  425. tooluniverse/tools/PubMed_search_articles.py +55 -0
  426. tooluniverse/tools/PubTator3_EntityAutocomplete.py +59 -0
  427. tooluniverse/tools/PubTator3_LiteratureSearch.py +55 -0
  428. tooluniverse/tools/QuestionRephraser.py +52 -0
  429. tooluniverse/tools/Reactome_get_pathway_reactions.py +46 -0
  430. tooluniverse/tools/ReproducibilityTransparencyReviewer.py +49 -0
  431. tooluniverse/tools/ResultsInterpretationReviewer.py +55 -0
  432. tooluniverse/tools/ScientificTextSummarizer.py +59 -0
  433. tooluniverse/tools/SemanticScholar_search_papers.py +55 -0
  434. tooluniverse/tools/TRIP_Database_Guidelines_Search.py +55 -0
  435. tooluniverse/tools/TestCaseGenerator.py +46 -0
  436. tooluniverse/tools/ToolCompatibilityAnalyzer.py +59 -0
  437. tooluniverse/tools/ToolDescriptionOptimizer.py +67 -0
  438. tooluniverse/tools/ToolDiscover.py +63 -0
  439. tooluniverse/tools/ToolGraphComposer.py +71 -0
  440. tooluniverse/tools/ToolGraphGenerationPipeline.py +63 -0
  441. tooluniverse/tools/ToolImplementationGenerator.py +67 -0
  442. tooluniverse/tools/ToolMetadataGenerationPipeline.py +63 -0
  443. tooluniverse/tools/ToolMetadataGenerator.py +55 -0
  444. tooluniverse/tools/ToolMetadataStandardizer.py +52 -0
  445. tooluniverse/tools/ToolOptimizer.py +59 -0
  446. tooluniverse/tools/ToolOutputSummarizer.py +67 -0
  447. tooluniverse/tools/ToolQualityEvaluator.py +59 -0
  448. tooluniverse/tools/ToolRelationshipDetector.py +52 -0
  449. tooluniverse/tools/ToolSpecificationGenerator.py +67 -0
  450. tooluniverse/tools/ToolSpecificationOptimizer.py +63 -0
  451. tooluniverse/tools/Tool_Finder.py +67 -0
  452. tooluniverse/tools/Tool_Finder_Keyword.py +67 -0
  453. tooluniverse/tools/Tool_Finder_LLM.py +67 -0
  454. tooluniverse/tools/Tool_RAG.py +49 -0
  455. tooluniverse/tools/UniProt_get_alternative_names_by_accession.py +49 -0
  456. tooluniverse/tools/UniProt_get_disease_variants_by_accession.py +49 -0
  457. tooluniverse/tools/UniProt_get_entry_by_accession.py +49 -0
  458. tooluniverse/tools/UniProt_get_function_by_accession.py +49 -0
  459. tooluniverse/tools/UniProt_get_isoform_ids_by_accession.py +49 -0
  460. tooluniverse/tools/UniProt_get_organism_by_accession.py +49 -0
  461. tooluniverse/tools/UniProt_get_ptm_processing_by_accession.py +49 -0
  462. tooluniverse/tools/UniProt_get_recommended_name_by_accession.py +49 -0
  463. tooluniverse/tools/UniProt_get_sequence_by_accession.py +49 -0
  464. tooluniverse/tools/UniProt_get_subcellular_location_by_accession.py +49 -0
  465. tooluniverse/tools/Unpaywall_check_oa_status.py +52 -0
  466. tooluniverse/tools/WHO_Guideline_Full_Text.py +46 -0
  467. tooluniverse/tools/WHO_Guidelines_Search.py +52 -0
  468. tooluniverse/tools/Wikidata_SPARQL_query.py +52 -0
  469. tooluniverse/tools/WritingPresentationReviewer.py +49 -0
  470. tooluniverse/tools/Zenodo_search_records.py +59 -0
  471. tooluniverse/tools/__init__.py +1738 -0
  472. tooluniverse/tools/_shared_client.py +138 -0
  473. tooluniverse/tools/alphafold_get_annotations.py +52 -0
  474. tooluniverse/tools/alphafold_get_prediction.py +55 -0
  475. tooluniverse/tools/alphafold_get_summary.py +46 -0
  476. tooluniverse/tools/call_agentic_human.py +46 -0
  477. tooluniverse/tools/cancer_biomarkers_disease_target_score.py +52 -0
  478. tooluniverse/tools/cancer_gene_census_disease_target_score.py +52 -0
  479. tooluniverse/tools/cellosaurus_get_cell_line_info.py +55 -0
  480. tooluniverse/tools/cellosaurus_query_converter.py +52 -0
  481. tooluniverse/tools/cellosaurus_search_cell_lines.py +55 -0
  482. tooluniverse/tools/chembl_disease_target_score.py +52 -0
  483. tooluniverse/tools/dict_search.py +67 -0
  484. tooluniverse/tools/dili_search.py +67 -0
  485. tooluniverse/tools/diqt_search.py +67 -0
  486. tooluniverse/tools/disease_target_score.py +59 -0
  487. tooluniverse/tools/drugbank_filter_drugs_by_name.py +55 -0
  488. tooluniverse/tools/drugbank_full_search.py +67 -0
  489. tooluniverse/tools/drugbank_get_drug_basic_info_by_drug_name_or_drugbank_id.py +63 -0
  490. tooluniverse/tools/drugbank_get_drug_chemistry_by_drug_name_or_drugbank_id.py +63 -0
  491. tooluniverse/tools/drugbank_get_drug_interactions_by_drug_name_or_drugbank_id.py +63 -0
  492. tooluniverse/tools/drugbank_get_drug_name_and_description_by_indication.py +63 -0
  493. tooluniverse/tools/drugbank_get_drug_name_and_description_by_pathway_name.py +63 -0
  494. tooluniverse/tools/drugbank_get_drug_name_and_description_by_target_name.py +63 -0
  495. tooluniverse/tools/drugbank_get_drug_name_description_pharmacology_by_mechanism_of_action.py +63 -0
  496. tooluniverse/tools/drugbank_get_drug_pathways_and_reactions_by_drug_name_or_drugbank_id.py +63 -0
  497. tooluniverse/tools/drugbank_get_drug_products_by_name_or_drugbank_id.py +63 -0
  498. tooluniverse/tools/drugbank_get_drug_references_by_drug_name_or_drugbank_id.py +63 -0
  499. tooluniverse/tools/drugbank_get_indications_by_drug_name_or_drugbank_id.py +63 -0
  500. tooluniverse/tools/drugbank_get_pharmacology_by_drug_name_or_drugbank_id.py +63 -0
  501. tooluniverse/tools/drugbank_get_safety_by_drug_name_or_drugbank_id.py +63 -0
  502. tooluniverse/tools/drugbank_get_targets_by_drug_name_or_drugbank_id.py +63 -0
  503. tooluniverse/tools/drugbank_links_search.py +67 -0
  504. tooluniverse/tools/drugbank_vocab_filter.py +63 -0
  505. tooluniverse/tools/drugbank_vocab_search.py +67 -0
  506. tooluniverse/tools/embedding_database_add.py +63 -0
  507. tooluniverse/tools/embedding_database_create.py +71 -0
  508. tooluniverse/tools/embedding_database_load.py +63 -0
  509. tooluniverse/tools/embedding_database_search.py +67 -0
  510. tooluniverse/tools/embedding_sync_download.py +63 -0
  511. tooluniverse/tools/embedding_sync_upload.py +71 -0
  512. tooluniverse/tools/enrichr_gene_enrichment_analysis.py +52 -0
  513. tooluniverse/tools/europepmc_disease_target_score.py +52 -0
  514. tooluniverse/tools/eva_disease_target_score.py +52 -0
  515. tooluniverse/tools/eva_somatic_disease_target_score.py +52 -0
  516. tooluniverse/tools/expression_atlas_disease_target_score.py +52 -0
  517. tooluniverse/tools/extract_clinical_trial_adverse_events.py +59 -0
  518. tooluniverse/tools/extract_clinical_trial_outcomes.py +52 -0
  519. tooluniverse/tools/genomics_england_disease_target_score.py +52 -0
  520. tooluniverse/tools/get_HPO_ID_by_phenotype.py +55 -0
  521. tooluniverse/tools/get_albumentations_info.py +44 -0
  522. tooluniverse/tools/get_altair_info.py +44 -0
  523. tooluniverse/tools/get_anndata_info.py +49 -0
  524. tooluniverse/tools/get_arboreto_info.py +46 -0
  525. tooluniverse/tools/get_arxiv_info.py +46 -0
  526. tooluniverse/tools/get_ase_info.py +46 -0
  527. tooluniverse/tools/get_assembly_info_by_pdb_id.py +46 -0
  528. tooluniverse/tools/get_assembly_summary.py +46 -0
  529. tooluniverse/tools/get_astropy_info.py +44 -0
  530. tooluniverse/tools/get_binding_affinity_by_pdb_id.py +46 -0
  531. tooluniverse/tools/get_biopandas_info.py +49 -0
  532. tooluniverse/tools/get_biopython_info.py +49 -0
  533. tooluniverse/tools/get_bioservices_info.py +44 -0
  534. tooluniverse/tools/get_biotite_info.py +49 -0
  535. tooluniverse/tools/get_bokeh_info.py +44 -0
  536. tooluniverse/tools/get_brian2_info.py +44 -0
  537. tooluniverse/tools/get_cartopy_info.py +44 -0
  538. tooluniverse/tools/get_catboost_info.py +44 -0
  539. tooluniverse/tools/get_cellpose_info.py +49 -0
  540. tooluniverse/tools/get_cellrank_info.py +44 -0
  541. tooluniverse/tools/get_cellxgene_census_info.py +46 -0
  542. tooluniverse/tools/get_cftime_info.py +44 -0
  543. tooluniverse/tools/get_chem_comp_audit_info.py +46 -0
  544. tooluniverse/tools/get_chem_comp_charge_and_ambiguity.py +46 -0
  545. tooluniverse/tools/get_chembl_webresource_client_info.py +44 -0
  546. tooluniverse/tools/get_citation_info_by_pdb_id.py +46 -0
  547. tooluniverse/tools/get_clair3_info.py +46 -0
  548. tooluniverse/tools/get_clinical_trial_conditions_and_interventions.py +55 -0
  549. tooluniverse/tools/get_clinical_trial_descriptions.py +52 -0
  550. tooluniverse/tools/get_clinical_trial_eligibility_criteria.py +55 -0
  551. tooluniverse/tools/get_clinical_trial_locations.py +52 -0
  552. tooluniverse/tools/get_clinical_trial_outcome_measures.py +52 -0
  553. tooluniverse/tools/get_clinical_trial_references.py +52 -0
  554. tooluniverse/tools/get_clinical_trial_status_and_dates.py +52 -0
  555. tooluniverse/tools/get_cobra_info.py +46 -0
  556. tooluniverse/tools/get_cobrapy_info.py +46 -0
  557. tooluniverse/tools/get_cooler_info.py +49 -0
  558. tooluniverse/tools/get_core_refinement_statistics.py +46 -0
  559. tooluniverse/tools/get_cryosparc_tools_info.py +46 -0
  560. tooluniverse/tools/get_crystal_growth_conditions_by_pdb_id.py +49 -0
  561. tooluniverse/tools/get_crystallization_ph_by_pdb_id.py +46 -0
  562. tooluniverse/tools/get_crystallographic_properties_by_pdb_id.py +49 -0
  563. tooluniverse/tools/get_cupy_info.py +44 -0
  564. tooluniverse/tools/get_cyvcf2_info.py +49 -0
  565. tooluniverse/tools/get_dask_info.py +44 -0
  566. tooluniverse/tools/get_datamol_info.py +44 -0
  567. tooluniverse/tools/get_datashader_info.py +44 -0
  568. tooluniverse/tools/get_deepchem_info.py +49 -0
  569. tooluniverse/tools/get_deeppurpose_info.py +46 -0
  570. tooluniverse/tools/get_deeptools_info.py +46 -0
  571. tooluniverse/tools/get_deepxde_info.py +49 -0
  572. tooluniverse/tools/get_dendropy_info.py +44 -0
  573. tooluniverse/tools/get_descriptastorus_info.py +46 -0
  574. tooluniverse/tools/get_diffdock_info.py +46 -0
  575. tooluniverse/tools/get_dscribe_info.py +49 -0
  576. tooluniverse/tools/get_ec_number_by_entity_id.py +46 -0
  577. tooluniverse/tools/get_elephant_info.py +44 -0
  578. tooluniverse/tools/get_em_3d_fitting_and_reconstruction_details.py +49 -0
  579. tooluniverse/tools/get_emdb_ids_by_pdb_id.py +46 -0
  580. tooluniverse/tools/get_episcanpy_info.py +44 -0
  581. tooluniverse/tools/get_ete3_info.py +44 -0
  582. tooluniverse/tools/get_faiss_info.py +46 -0
  583. tooluniverse/tools/get_fanc_info.py +46 -0
  584. tooluniverse/tools/get_flask_info.py +46 -0
  585. tooluniverse/tools/get_flowio_info.py +46 -0
  586. tooluniverse/tools/get_flowkit_info.py +46 -0
  587. tooluniverse/tools/get_flowutils_info.py +46 -0
  588. tooluniverse/tools/get_freesasa_info.py +44 -0
  589. tooluniverse/tools/get_galpy_info.py +44 -0
  590. tooluniverse/tools/get_gene_name_by_entity_id.py +46 -0
  591. tooluniverse/tools/get_geopandas_info.py +44 -0
  592. tooluniverse/tools/get_gget_info.py +46 -0
  593. tooluniverse/tools/get_googlesearch_python_info.py +46 -0
  594. tooluniverse/tools/get_gseapy_info.py +49 -0
  595. tooluniverse/tools/get_h5py_info.py +46 -0
  596. tooluniverse/tools/get_harmony_pytorch_info.py +46 -0
  597. tooluniverse/tools/get_hmmlearn_info.py +46 -0
  598. tooluniverse/tools/get_holoviews_info.py +44 -0
  599. tooluniverse/tools/get_host_organism_by_pdb_id.py +46 -0
  600. tooluniverse/tools/get_htmd_info.py +44 -0
  601. tooluniverse/tools/get_hyperopt_info.py +49 -0
  602. tooluniverse/tools/get_igraph_info.py +49 -0
  603. tooluniverse/tools/get_imageio_info.py +44 -0
  604. tooluniverse/tools/get_imbalanced_learn_info.py +44 -0
  605. tooluniverse/tools/get_jcvi_info.py +46 -0
  606. tooluniverse/tools/get_joblib_info.py +44 -0
  607. tooluniverse/tools/get_joint_associated_diseases_by_HPO_ID_list.py +55 -0
  608. tooluniverse/tools/get_khmer_info.py +46 -0
  609. tooluniverse/tools/get_kipoiseq_info.py +44 -0
  610. tooluniverse/tools/get_lifelines_info.py +49 -0
  611. tooluniverse/tools/get_ligand_bond_count_by_pdb_id.py +46 -0
  612. tooluniverse/tools/get_ligand_smiles_by_chem_comp_id.py +49 -0
  613. tooluniverse/tools/get_lightgbm_info.py +44 -0
  614. tooluniverse/tools/get_loompy_info.py +46 -0
  615. tooluniverse/tools/get_mageck_info.py +46 -0
  616. tooluniverse/tools/get_matplotlib_info.py +49 -0
  617. tooluniverse/tools/get_mdanalysis_info.py +46 -0
  618. tooluniverse/tools/get_mdtraj_info.py +44 -0
  619. tooluniverse/tools/get_mne_info.py +44 -0
  620. tooluniverse/tools/get_molfeat_info.py +44 -0
  621. tooluniverse/tools/get_molvs_info.py +44 -0
  622. tooluniverse/tools/get_mordred_info.py +44 -0
  623. tooluniverse/tools/get_msprime_info.py +49 -0
  624. tooluniverse/tools/get_mudata_info.py +49 -0
  625. tooluniverse/tools/get_mutation_annotations_by_pdb_id.py +46 -0
  626. tooluniverse/tools/get_neo_info.py +44 -0
  627. tooluniverse/tools/get_netcdf4_info.py +44 -0
  628. tooluniverse/tools/get_networkx_info.py +46 -0
  629. tooluniverse/tools/get_nglview_info.py +44 -0
  630. tooluniverse/tools/get_nilearn_info.py +44 -0
  631. tooluniverse/tools/get_numba_info.py +46 -0
  632. tooluniverse/tools/get_numpy_info.py +46 -0
  633. tooluniverse/tools/get_oligosaccharide_descriptors_by_entity_id.py +49 -0
  634. tooluniverse/tools/get_openbabel_info.py +49 -0
  635. tooluniverse/tools/get_openchem_info.py +46 -0
  636. tooluniverse/tools/get_opencv_info.py +49 -0
  637. tooluniverse/tools/get_openmm_info.py +49 -0
  638. tooluniverse/tools/get_optlang_info.py +46 -0
  639. tooluniverse/tools/get_optuna_info.py +44 -0
  640. tooluniverse/tools/get_palantir_info.py +44 -0
  641. tooluniverse/tools/get_pandas_info.py +49 -0
  642. tooluniverse/tools/get_patsy_info.py +44 -0
  643. tooluniverse/tools/get_pdbfixer_info.py +46 -0
  644. tooluniverse/tools/get_phenotype_by_HPO_ID.py +46 -0
  645. tooluniverse/tools/get_pillow_info.py +44 -0
  646. tooluniverse/tools/get_plantcv_info.py +46 -0
  647. tooluniverse/tools/get_plip_info.py +46 -0
  648. tooluniverse/tools/get_plotly_info.py +44 -0
  649. tooluniverse/tools/get_poliastro_info.py +46 -0
  650. tooluniverse/tools/get_polymer_entity_annotations.py +49 -0
  651. tooluniverse/tools/get_polymer_entity_count_by_pdb_id.py +46 -0
  652. tooluniverse/tools/get_polymer_entity_ids_by_pdb_id.py +46 -0
  653. tooluniverse/tools/get_polymer_entity_type_by_entity_id.py +49 -0
  654. tooluniverse/tools/get_polymer_molecular_weight_by_entity_id.py +49 -0
  655. tooluniverse/tools/get_poretools_info.py +44 -0
  656. tooluniverse/tools/get_prody_info.py +46 -0
  657. tooluniverse/tools/get_protein_classification_by_pdb_id.py +49 -0
  658. tooluniverse/tools/get_protein_metadata_by_pdb_id.py +46 -0
  659. tooluniverse/tools/get_pubchempy_info.py +44 -0
  660. tooluniverse/tools/get_pybedtools_info.py +49 -0
  661. tooluniverse/tools/get_pybigwig_info.py +46 -0
  662. tooluniverse/tools/get_pydeseq2_info.py +46 -0
  663. tooluniverse/tools/get_pyensembl_info.py +44 -0
  664. tooluniverse/tools/get_pyephem_info.py +44 -0
  665. tooluniverse/tools/get_pyfaidx_info.py +49 -0
  666. tooluniverse/tools/get_pyfasta_info.py +44 -0
  667. tooluniverse/tools/get_pykalman_info.py +46 -0
  668. tooluniverse/tools/get_pyliftover_info.py +49 -0
  669. tooluniverse/tools/get_pymassspec_info.py +46 -0
  670. tooluniverse/tools/get_pymed_info.py +46 -0
  671. tooluniverse/tools/get_pymzml_info.py +46 -0
  672. tooluniverse/tools/get_pypdf2_info.py +46 -0
  673. tooluniverse/tools/get_pyranges_info.py +49 -0
  674. tooluniverse/tools/get_pyrosetta_info.py +44 -0
  675. tooluniverse/tools/get_pysam_info.py +46 -0
  676. tooluniverse/tools/get_pyscenic_info.py +46 -0
  677. tooluniverse/tools/get_pyscf_info.py +46 -0
  678. tooluniverse/tools/get_pyscreener_info.py +46 -0
  679. tooluniverse/tools/get_pytdc_info.py +46 -0
  680. tooluniverse/tools/get_python_libsbml_info.py +46 -0
  681. tooluniverse/tools/get_pytorch_info.py +49 -0
  682. tooluniverse/tools/get_pyvcf_info.py +44 -0
  683. tooluniverse/tools/get_pyvis_info.py +44 -0
  684. tooluniverse/tools/get_qutip_info.py +44 -0
  685. tooluniverse/tools/get_rasterio_info.py +44 -0
  686. tooluniverse/tools/get_rdkit_info.py +46 -0
  687. tooluniverse/tools/get_refinement_resolution_by_pdb_id.py +49 -0
  688. tooluniverse/tools/get_release_deposit_dates_by_pdb_id.py +49 -0
  689. tooluniverse/tools/get_reportlab_info.py +49 -0
  690. tooluniverse/tools/get_requests_info.py +49 -0
  691. tooluniverse/tools/get_ruptures_info.py +46 -0
  692. tooluniverse/tools/get_scanorama_info.py +44 -0
  693. tooluniverse/tools/get_scanpy_info.py +49 -0
  694. tooluniverse/tools/get_schnetpack_info.py +49 -0
  695. tooluniverse/tools/get_scholarly_info.py +46 -0
  696. tooluniverse/tools/get_scikit_bio_info.py +49 -0
  697. tooluniverse/tools/get_scikit_image_info.py +46 -0
  698. tooluniverse/tools/get_scikit_learn_info.py +49 -0
  699. tooluniverse/tools/get_scipy_info.py +46 -0
  700. tooluniverse/tools/get_scrublet_info.py +49 -0
  701. tooluniverse/tools/get_scvelo_info.py +49 -0
  702. tooluniverse/tools/get_scvi_tools_info.py +44 -0
  703. tooluniverse/tools/get_seaborn_info.py +49 -0
  704. tooluniverse/tools/get_sequence_by_pdb_id.py +46 -0
  705. tooluniverse/tools/get_sequence_lengths_by_pdb_id.py +46 -0
  706. tooluniverse/tools/get_sequence_positional_features_by_instance_id.py +49 -0
  707. tooluniverse/tools/get_skopt_info.py +44 -0
  708. tooluniverse/tools/get_souporcell_info.py +46 -0
  709. tooluniverse/tools/get_source_organism_by_pdb_id.py +46 -0
  710. tooluniverse/tools/get_space_group_by_pdb_id.py +46 -0
  711. tooluniverse/tools/get_statsmodels_info.py +49 -0
  712. tooluniverse/tools/get_structure_determination_software_by_pdb_id.py +49 -0
  713. tooluniverse/tools/get_structure_title_by_pdb_id.py +46 -0
  714. tooluniverse/tools/get_structure_validation_metrics_by_pdb_id.py +49 -0
  715. tooluniverse/tools/get_sunpy_info.py +44 -0
  716. tooluniverse/tools/get_sympy_info.py +46 -0
  717. tooluniverse/tools/get_target_cofactor_info.py +46 -0
  718. tooluniverse/tools/get_taxonomy_by_pdb_id.py +46 -0
  719. tooluniverse/tools/get_tiledb_info.py +46 -0
  720. tooluniverse/tools/get_tiledbsoma_info.py +46 -0
  721. tooluniverse/tools/get_torch_geometric_info.py +49 -0
  722. tooluniverse/tools/get_tqdm_info.py +46 -0
  723. tooluniverse/tools/get_trackpy_info.py +46 -0
  724. tooluniverse/tools/get_tskit_info.py +46 -0
  725. tooluniverse/tools/get_umap_learn_info.py +49 -0
  726. tooluniverse/tools/get_uniprot_accession_by_entity_id.py +49 -0
  727. tooluniverse/tools/get_velocyto_info.py +44 -0
  728. tooluniverse/tools/get_viennarna_info.py +49 -0
  729. tooluniverse/tools/get_webpage_text_from_url.py +52 -0
  730. tooluniverse/tools/get_webpage_title.py +49 -0
  731. tooluniverse/tools/get_xarray_info.py +44 -0
  732. tooluniverse/tools/get_xesmf_info.py +44 -0
  733. tooluniverse/tools/get_xgboost_info.py +44 -0
  734. tooluniverse/tools/get_zarr_info.py +44 -0
  735. tooluniverse/tools/gwas_get_association_by_id.py +49 -0
  736. tooluniverse/tools/gwas_get_associations_for_snp.py +67 -0
  737. tooluniverse/tools/gwas_get_associations_for_study.py +55 -0
  738. tooluniverse/tools/gwas_get_associations_for_trait.py +55 -0
  739. tooluniverse/tools/gwas_get_snp_by_id.py +46 -0
  740. tooluniverse/tools/gwas_get_snps_for_gene.py +55 -0
  741. tooluniverse/tools/gwas_get_studies_for_trait.py +75 -0
  742. tooluniverse/tools/gwas_get_study_by_id.py +46 -0
  743. tooluniverse/tools/gwas_get_variants_for_trait.py +55 -0
  744. tooluniverse/tools/gwas_search_associations.py +75 -0
  745. tooluniverse/tools/gwas_search_snps.py +63 -0
  746. tooluniverse/tools/gwas_search_studies.py +75 -0
  747. tooluniverse/tools/humanbase_ppi_analysis.py +67 -0
  748. tooluniverse/tools/mesh_get_subjects_by_pharmacological_action.py +63 -0
  749. tooluniverse/tools/mesh_get_subjects_by_subject_id.py +63 -0
  750. tooluniverse/tools/mesh_get_subjects_by_subject_name.py +63 -0
  751. tooluniverse/tools/mesh_get_subjects_by_subject_scope_or_definition.py +63 -0
  752. tooluniverse/tools/odphp_itemlist.py +49 -0
  753. tooluniverse/tools/odphp_myhealthfinder.py +67 -0
  754. tooluniverse/tools/odphp_outlink_fetch.py +59 -0
  755. tooluniverse/tools/odphp_topicsearch.py +67 -0
  756. tooluniverse/tools/openalex_literature_search.py +67 -0
  757. tooluniverse/tools/reactome_disease_target_score.py +52 -0
  758. tooluniverse/tools/search_clinical_trials.py +67 -0
  759. tooluniverse/tools/visualize_molecule_2d.py +83 -0
  760. tooluniverse/tools/visualize_molecule_3d.py +91 -0
  761. tooluniverse/tools/visualize_protein_structure_3d.py +79 -0
  762. tooluniverse/unified_guideline_tools.py +1210 -0
  763. tooluniverse/unpaywall_tool.py +0 -1
  764. tooluniverse/utils.py +71 -2
  765. tooluniverse/visualization_tool.py +897 -0
  766. tooluniverse/wikidata_sparql_tool.py +1 -2
  767. tooluniverse/zenodo_tool.py +1 -3
  768. {tooluniverse-1.0.6.dist-info → tooluniverse-1.0.7.dist-info}/METADATA +11 -2
  769. tooluniverse-1.0.7.dist-info/RECORD +855 -0
  770. {tooluniverse-1.0.6.dist-info → tooluniverse-1.0.7.dist-info}/entry_points.txt +3 -0
  771. tooluniverse/test/list_azure_openai_models.py +0 -210
  772. tooluniverse/test/mcp_server_test.py +0 -0
  773. tooluniverse/test/test_admetai_tool.py +0 -370
  774. tooluniverse/test/test_agentic_tool.py +0 -129
  775. tooluniverse/test/test_agentic_tool_azure_models.py +0 -91
  776. tooluniverse/test/test_alphafold_tool.py +0 -108
  777. tooluniverse/test/test_api_key_validation_min.py +0 -64
  778. tooluniverse/test/test_chem_tool.py +0 -37
  779. tooluniverse/test/test_claude_sdk.py +0 -93
  780. tooluniverse/test/test_compose_lieraturereview.py +0 -63
  781. tooluniverse/test/test_compose_tool.py +0 -448
  782. tooluniverse/test/test_dailymed.py +0 -69
  783. tooluniverse/test/test_dataset_tool.py +0 -200
  784. tooluniverse/test/test_disease_target_score.py +0 -56
  785. tooluniverse/test/test_drugbank_filter_examples.py +0 -179
  786. tooluniverse/test/test_efo.py +0 -31
  787. tooluniverse/test/test_enrichr_tool.py +0 -21
  788. tooluniverse/test/test_europe_pmc_tool.py +0 -20
  789. tooluniverse/test/test_fda_adv.py +0 -95
  790. tooluniverse/test/test_fda_drug_labeling.py +0 -91
  791. tooluniverse/test/test_gene_ontology_tools.py +0 -66
  792. tooluniverse/test/test_global_fallback.py +0 -288
  793. tooluniverse/test/test_gwas_tool.py +0 -139
  794. tooluniverse/test/test_hooks_direct.py +0 -219
  795. tooluniverse/test/test_hpa.py +0 -625
  796. tooluniverse/test/test_humanbase_tool.py +0 -20
  797. tooluniverse/test/test_idmap_tools.py +0 -61
  798. tooluniverse/test/test_list_built_in_tools.py +0 -33
  799. tooluniverse/test/test_mcp_server.py +0 -211
  800. tooluniverse/test/test_mcp_tool.py +0 -247
  801. tooluniverse/test/test_medlineplus.py +0 -220
  802. tooluniverse/test/test_odphp_tool.py +0 -166
  803. tooluniverse/test/test_openalex_tool.py +0 -32
  804. tooluniverse/test/test_openrouter_client.py +0 -288
  805. tooluniverse/test/test_opentargets.py +0 -28
  806. tooluniverse/test/test_pubchem_tool.py +0 -116
  807. tooluniverse/test/test_pubtator_tool.py +0 -37
  808. tooluniverse/test/test_rcsb_pdb_tool.py +0 -86
  809. tooluniverse/test/test_reactome.py +0 -54
  810. tooluniverse/test/test_semantic_scholar_tool.py +0 -24
  811. tooluniverse/test/test_software_tools.py +0 -147
  812. tooluniverse/test/test_stdio_hooks.py +0 -285
  813. tooluniverse/test/test_tool_description_optimizer.py +0 -49
  814. tooluniverse/test/test_tool_finder.py +0 -26
  815. tooluniverse/test/test_tool_finder_llm.py +0 -252
  816. tooluniverse/test/test_tools_find.py +0 -195
  817. tooluniverse/test/test_uniprot_tools.py +0 -74
  818. tooluniverse/test/test_uspto_tool.py +0 -72
  819. tooluniverse/test/test_xml_tool.py +0 -113
  820. tooluniverse-1.0.6.dist-info/RECORD +0 -230
  821. {tooluniverse-1.0.6.dist-info → tooluniverse-1.0.7.dist-info}/WHEEL +0 -0
  822. {tooluniverse-1.0.6.dist-info → tooluniverse-1.0.7.dist-info}/licenses/LICENSE +0 -0
  823. {tooluniverse-1.0.6.dist-info → tooluniverse-1.0.7.dist-info}/top_level.txt +0 -0
@@ -0,0 +1,46 @@
1
+ """
2
+ FDA_get_drug_generic_name
3
+
4
+ Get the drug’s generic name based on the drug's generic or brand name.
5
+ """
6
+
7
+ from typing import Any, Optional, Callable
8
+ from ._shared_client import get_shared_client
9
+
10
+
11
+ def FDA_get_drug_generic_name(
12
+ drug_name: str,
13
+ *,
14
+ stream_callback: Optional[Callable[[str], None]] = None,
15
+ use_cache: bool = False,
16
+ validate: bool = True,
17
+ ) -> Any:
18
+ """
19
+ Get the drug’s generic name based on the drug's generic or brand name.
20
+
21
+ Parameters
22
+ ----------
23
+ drug_name : str
24
+ The generic or brand name of the drug.
25
+ stream_callback : Callable, optional
26
+ Callback for streaming output
27
+ use_cache : bool, default False
28
+ Enable caching
29
+ validate : bool, default True
30
+ Validate parameters
31
+
32
+ Returns
33
+ -------
34
+ Any
35
+ """
36
+ # Handle mutable defaults to avoid B006 linting error
37
+
38
+ return get_shared_client().run_one_function(
39
+ {"name": "FDA_get_drug_generic_name", "arguments": {"drug_name": drug_name}},
40
+ stream_callback=stream_callback,
41
+ use_cache=use_cache,
42
+ validate=validate,
43
+ )
44
+
45
+
46
+ __all__ = ["FDA_get_drug_generic_name"]
@@ -0,0 +1,55 @@
1
+ """
2
+ FDA_get_drug_interactions_by_drug_name
3
+
4
+ Retrieve drug interactions based on the specified drug name.
5
+ """
6
+
7
+ from typing import Any, Optional, Callable
8
+ from ._shared_client import get_shared_client
9
+
10
+
11
+ def FDA_get_drug_interactions_by_drug_name(
12
+ drug_name: str,
13
+ limit: Optional[int] = None,
14
+ skip: Optional[int] = None,
15
+ *,
16
+ stream_callback: Optional[Callable[[str], None]] = None,
17
+ use_cache: bool = False,
18
+ validate: bool = True,
19
+ ) -> Any:
20
+ """
21
+ Retrieve drug interactions based on the specified drug name.
22
+
23
+ Parameters
24
+ ----------
25
+ drug_name : str
26
+ The name of the drug.
27
+ limit : int
28
+ The number of records to return.
29
+ skip : int
30
+ The number of records to skip.
31
+ stream_callback : Callable, optional
32
+ Callback for streaming output
33
+ use_cache : bool, default False
34
+ Enable caching
35
+ validate : bool, default True
36
+ Validate parameters
37
+
38
+ Returns
39
+ -------
40
+ Any
41
+ """
42
+ # Handle mutable defaults to avoid B006 linting error
43
+
44
+ return get_shared_client().run_one_function(
45
+ {
46
+ "name": "FDA_get_drug_interactions_by_drug_name",
47
+ "arguments": {"drug_name": drug_name, "limit": limit, "skip": skip},
48
+ },
49
+ stream_callback=stream_callback,
50
+ use_cache=use_cache,
51
+ validate=validate,
52
+ )
53
+
54
+
55
+ __all__ = ["FDA_get_drug_interactions_by_drug_name"]
@@ -0,0 +1,55 @@
1
+ """
2
+ FDA_get_drug_name_by_SPL_ID
3
+
4
+ Retrieve the drug name based on the FDA application number, NUI unique identifier, document ID of...
5
+ """
6
+
7
+ from typing import Any, Optional, Callable
8
+ from ._shared_client import get_shared_client
9
+
10
+
11
+ def FDA_get_drug_name_by_SPL_ID(
12
+ field_info: str,
13
+ limit: Optional[int] = None,
14
+ skip: Optional[int] = None,
15
+ *,
16
+ stream_callback: Optional[Callable[[str], None]] = None,
17
+ use_cache: bool = False,
18
+ validate: bool = True,
19
+ ) -> Any:
20
+ """
21
+ Retrieve the drug name based on the FDA application number, NUI unique identifier, document ID of...
22
+
23
+ Parameters
24
+ ----------
25
+ field_info : str
26
+ The specific field information to search for.
27
+ limit : int
28
+ The number of records to return.
29
+ skip : int
30
+ The number of records to skip.
31
+ stream_callback : Callable, optional
32
+ Callback for streaming output
33
+ use_cache : bool, default False
34
+ Enable caching
35
+ validate : bool, default True
36
+ Validate parameters
37
+
38
+ Returns
39
+ -------
40
+ Any
41
+ """
42
+ # Handle mutable defaults to avoid B006 linting error
43
+
44
+ return get_shared_client().run_one_function(
45
+ {
46
+ "name": "FDA_get_drug_name_by_SPL_ID",
47
+ "arguments": {"field_info": field_info, "limit": limit, "skip": skip},
48
+ },
49
+ stream_callback=stream_callback,
50
+ use_cache=use_cache,
51
+ validate=validate,
52
+ )
53
+
54
+
55
+ __all__ = ["FDA_get_drug_name_by_SPL_ID"]
@@ -0,0 +1,59 @@
1
+ """
2
+ FDA_get_drug_name_by_adverse_reaction
3
+
4
+ Retrieve the drug name based on specific adverse reactions reported. Warning: This tool only outp...
5
+ """
6
+
7
+ from typing import Any, Optional, Callable
8
+ from ._shared_client import get_shared_client
9
+
10
+
11
+ def FDA_get_drug_name_by_adverse_reaction(
12
+ adverse_reaction: str,
13
+ limit: Optional[int] = None,
14
+ skip: Optional[int] = None,
15
+ *,
16
+ stream_callback: Optional[Callable[[str], None]] = None,
17
+ use_cache: bool = False,
18
+ validate: bool = True,
19
+ ) -> Any:
20
+ """
21
+ Retrieve the drug name based on specific adverse reactions reported. Warning: This tool only outp...
22
+
23
+ Parameters
24
+ ----------
25
+ adverse_reaction : str
26
+ The adverse reaction to search for.
27
+ limit : int
28
+ The number of records to return.
29
+ skip : int
30
+ The number of records to skip.
31
+ stream_callback : Callable, optional
32
+ Callback for streaming output
33
+ use_cache : bool, default False
34
+ Enable caching
35
+ validate : bool, default True
36
+ Validate parameters
37
+
38
+ Returns
39
+ -------
40
+ Any
41
+ """
42
+ # Handle mutable defaults to avoid B006 linting error
43
+
44
+ return get_shared_client().run_one_function(
45
+ {
46
+ "name": "FDA_get_drug_name_by_adverse_reaction",
47
+ "arguments": {
48
+ "adverse_reaction": adverse_reaction,
49
+ "limit": limit,
50
+ "skip": skip,
51
+ },
52
+ },
53
+ stream_callback=stream_callback,
54
+ use_cache=use_cache,
55
+ validate=validate,
56
+ )
57
+
58
+
59
+ __all__ = ["FDA_get_drug_name_by_adverse_reaction"]
@@ -0,0 +1,59 @@
1
+ """
2
+ FDA_get_drug_name_by_calibration_instructions
3
+
4
+ Retrieve the drug name based on the calibration instructions provided.
5
+ """
6
+
7
+ from typing import Any, Optional, Callable
8
+ from ._shared_client import get_shared_client
9
+
10
+
11
+ def FDA_get_drug_name_by_calibration_instructions(
12
+ calibration_instructions: str,
13
+ limit: Optional[int] = None,
14
+ skip: Optional[int] = None,
15
+ *,
16
+ stream_callback: Optional[Callable[[str], None]] = None,
17
+ use_cache: bool = False,
18
+ validate: bool = True,
19
+ ) -> Any:
20
+ """
21
+ Retrieve the drug name based on the calibration instructions provided.
22
+
23
+ Parameters
24
+ ----------
25
+ calibration_instructions : str
26
+ Instructions used for calibration of the drug.
27
+ limit : int
28
+ The number of records to return.
29
+ skip : int
30
+ The number of records to skip.
31
+ stream_callback : Callable, optional
32
+ Callback for streaming output
33
+ use_cache : bool, default False
34
+ Enable caching
35
+ validate : bool, default True
36
+ Validate parameters
37
+
38
+ Returns
39
+ -------
40
+ Any
41
+ """
42
+ # Handle mutable defaults to avoid B006 linting error
43
+
44
+ return get_shared_client().run_one_function(
45
+ {
46
+ "name": "FDA_get_drug_name_by_calibration_instructions",
47
+ "arguments": {
48
+ "calibration_instructions": calibration_instructions,
49
+ "limit": limit,
50
+ "skip": skip,
51
+ },
52
+ },
53
+ stream_callback=stream_callback,
54
+ use_cache=use_cache,
55
+ validate=validate,
56
+ )
57
+
58
+
59
+ __all__ = ["FDA_get_drug_name_by_calibration_instructions"]
@@ -0,0 +1,59 @@
1
+ """
2
+ FDA_get_drug_name_by_dependence_info
3
+
4
+ Retrieve the drug name based on information about dependence characteristics.
5
+ """
6
+
7
+ from typing import Any, Optional, Callable
8
+ from ._shared_client import get_shared_client
9
+
10
+
11
+ def FDA_get_drug_name_by_dependence_info(
12
+ dependence_info: str,
13
+ limit: Optional[int] = None,
14
+ skip: Optional[int] = None,
15
+ *,
16
+ stream_callback: Optional[Callable[[str], None]] = None,
17
+ use_cache: bool = False,
18
+ validate: bool = True,
19
+ ) -> Any:
20
+ """
21
+ Retrieve the drug name based on information about dependence characteristics.
22
+
23
+ Parameters
24
+ ----------
25
+ dependence_info : str
26
+ Information related to psychological and physical dependence of the drug.
27
+ limit : int
28
+ The number of records to return.
29
+ skip : int
30
+ The number of records to skip.
31
+ stream_callback : Callable, optional
32
+ Callback for streaming output
33
+ use_cache : bool, default False
34
+ Enable caching
35
+ validate : bool, default True
36
+ Validate parameters
37
+
38
+ Returns
39
+ -------
40
+ Any
41
+ """
42
+ # Handle mutable defaults to avoid B006 linting error
43
+
44
+ return get_shared_client().run_one_function(
45
+ {
46
+ "name": "FDA_get_drug_name_by_dependence_info",
47
+ "arguments": {
48
+ "dependence_info": dependence_info,
49
+ "limit": limit,
50
+ "skip": skip,
51
+ },
52
+ },
53
+ stream_callback=stream_callback,
54
+ use_cache=use_cache,
55
+ validate=validate,
56
+ )
57
+
58
+
59
+ __all__ = ["FDA_get_drug_name_by_dependence_info"]
@@ -0,0 +1,55 @@
1
+ """
2
+ FDA_get_drug_name_by_document_id
3
+
4
+ Retrieve the drug name based on the document ID.
5
+ """
6
+
7
+ from typing import Any, Optional, Callable
8
+ from ._shared_client import get_shared_client
9
+
10
+
11
+ def FDA_get_drug_name_by_document_id(
12
+ document_id: str,
13
+ limit: Optional[int] = None,
14
+ skip: Optional[int] = None,
15
+ *,
16
+ stream_callback: Optional[Callable[[str], None]] = None,
17
+ use_cache: bool = False,
18
+ validate: bool = True,
19
+ ) -> Any:
20
+ """
21
+ Retrieve the drug name based on the document ID.
22
+
23
+ Parameters
24
+ ----------
25
+ document_id : str
26
+ The document ID, a globally unique identifier (GUID) for the particular revis...
27
+ limit : int
28
+ The number of records to return.
29
+ skip : int
30
+ The number of records to skip.
31
+ stream_callback : Callable, optional
32
+ Callback for streaming output
33
+ use_cache : bool, default False
34
+ Enable caching
35
+ validate : bool, default True
36
+ Validate parameters
37
+
38
+ Returns
39
+ -------
40
+ Any
41
+ """
42
+ # Handle mutable defaults to avoid B006 linting error
43
+
44
+ return get_shared_client().run_one_function(
45
+ {
46
+ "name": "FDA_get_drug_name_by_document_id",
47
+ "arguments": {"document_id": document_id, "limit": limit, "skip": skip},
48
+ },
49
+ stream_callback=stream_callback,
50
+ use_cache=use_cache,
51
+ validate=validate,
52
+ )
53
+
54
+
55
+ __all__ = ["FDA_get_drug_name_by_document_id"]
@@ -0,0 +1,55 @@
1
+ """
2
+ FDA_get_drug_name_by_dosage_info
3
+
4
+ Retrieve the drug name based on dosage and administration information.
5
+ """
6
+
7
+ from typing import Any, Optional, Callable
8
+ from ._shared_client import get_shared_client
9
+
10
+
11
+ def FDA_get_drug_name_by_dosage_info(
12
+ dosage_info: str,
13
+ limit: Optional[int] = None,
14
+ skip: Optional[int] = None,
15
+ *,
16
+ stream_callback: Optional[Callable[[str], None]] = None,
17
+ use_cache: bool = False,
18
+ validate: bool = True,
19
+ ) -> Any:
20
+ """
21
+ Retrieve the drug name based on dosage and administration information.
22
+
23
+ Parameters
24
+ ----------
25
+ dosage_info : str
26
+ Information about the drug product’s dosage and administration recommendations.
27
+ limit : int
28
+ The number of records to return.
29
+ skip : int
30
+ The number of records to skip.
31
+ stream_callback : Callable, optional
32
+ Callback for streaming output
33
+ use_cache : bool, default False
34
+ Enable caching
35
+ validate : bool, default True
36
+ Validate parameters
37
+
38
+ Returns
39
+ -------
40
+ Any
41
+ """
42
+ # Handle mutable defaults to avoid B006 linting error
43
+
44
+ return get_shared_client().run_one_function(
45
+ {
46
+ "name": "FDA_get_drug_name_by_dosage_info",
47
+ "arguments": {"dosage_info": dosage_info, "limit": limit, "skip": skip},
48
+ },
49
+ stream_callback=stream_callback,
50
+ use_cache=use_cache,
51
+ validate=validate,
52
+ )
53
+
54
+
55
+ __all__ = ["FDA_get_drug_name_by_dosage_info"]
@@ -0,0 +1,59 @@
1
+ """
2
+ FDA_get_drug_name_by_environmental_warning
3
+
4
+ Retrieve the drug name based on the specified environmental warnings.
5
+ """
6
+
7
+ from typing import Any, Optional, Callable
8
+ from ._shared_client import get_shared_client
9
+
10
+
11
+ def FDA_get_drug_name_by_environmental_warning(
12
+ environmental_warning: str,
13
+ limit: Optional[int] = None,
14
+ skip: Optional[int] = None,
15
+ *,
16
+ stream_callback: Optional[Callable[[str], None]] = None,
17
+ use_cache: bool = False,
18
+ validate: bool = True,
19
+ ) -> Any:
20
+ """
21
+ Retrieve the drug name based on the specified environmental warnings.
22
+
23
+ Parameters
24
+ ----------
25
+ environmental_warning : str
26
+ The environmental warning text to search for.
27
+ limit : int
28
+ The number of records to return.
29
+ skip : int
30
+ The number of records to skip.
31
+ stream_callback : Callable, optional
32
+ Callback for streaming output
33
+ use_cache : bool, default False
34
+ Enable caching
35
+ validate : bool, default True
36
+ Validate parameters
37
+
38
+ Returns
39
+ -------
40
+ Any
41
+ """
42
+ # Handle mutable defaults to avoid B006 linting error
43
+
44
+ return get_shared_client().run_one_function(
45
+ {
46
+ "name": "FDA_get_drug_name_by_environmental_warning",
47
+ "arguments": {
48
+ "environmental_warning": environmental_warning,
49
+ "limit": limit,
50
+ "skip": skip,
51
+ },
52
+ },
53
+ stream_callback=stream_callback,
54
+ use_cache=use_cache,
55
+ validate=validate,
56
+ )
57
+
58
+
59
+ __all__ = ["FDA_get_drug_name_by_environmental_warning"]
@@ -0,0 +1,59 @@
1
+ """
2
+ FDA_get_drug_name_by_inactive_ingredient
3
+
4
+ Retrieve the drug name based on the inactive ingredient information.
5
+ """
6
+
7
+ from typing import Any, Optional, Callable
8
+ from ._shared_client import get_shared_client
9
+
10
+
11
+ def FDA_get_drug_name_by_inactive_ingredient(
12
+ inactive_ingredient: str,
13
+ limit: Optional[int] = None,
14
+ skip: Optional[int] = None,
15
+ *,
16
+ stream_callback: Optional[Callable[[str], None]] = None,
17
+ use_cache: bool = False,
18
+ validate: bool = True,
19
+ ) -> Any:
20
+ """
21
+ Retrieve the drug name based on the inactive ingredient information.
22
+
23
+ Parameters
24
+ ----------
25
+ inactive_ingredient : str
26
+ The name of the inactive ingredient.
27
+ limit : int
28
+ The number of records to return.
29
+ skip : int
30
+ The number of records to skip.
31
+ stream_callback : Callable, optional
32
+ Callback for streaming output
33
+ use_cache : bool, default False
34
+ Enable caching
35
+ validate : bool, default True
36
+ Validate parameters
37
+
38
+ Returns
39
+ -------
40
+ Any
41
+ """
42
+ # Handle mutable defaults to avoid B006 linting error
43
+
44
+ return get_shared_client().run_one_function(
45
+ {
46
+ "name": "FDA_get_drug_name_by_inactive_ingredient",
47
+ "arguments": {
48
+ "inactive_ingredient": inactive_ingredient,
49
+ "limit": limit,
50
+ "skip": skip,
51
+ },
52
+ },
53
+ stream_callback=stream_callback,
54
+ use_cache=use_cache,
55
+ validate=validate,
56
+ )
57
+
58
+
59
+ __all__ = ["FDA_get_drug_name_by_inactive_ingredient"]
@@ -0,0 +1,55 @@
1
+ """
2
+ FDA_get_drug_name_by_info_on_conditions_for_doctor_consultation
3
+
4
+ Retrieve the drug names that require asking a doctor before use due to a patient's specific condi...
5
+ """
6
+
7
+ from typing import Any, Optional, Callable
8
+ from ._shared_client import get_shared_client
9
+
10
+
11
+ def FDA_get_drug_name_by_info_on_conditions_for_doctor_consultation(
12
+ condition: str,
13
+ limit: Optional[int] = None,
14
+ skip: Optional[int] = None,
15
+ *,
16
+ stream_callback: Optional[Callable[[str], None]] = None,
17
+ use_cache: bool = False,
18
+ validate: bool = True,
19
+ ) -> Any:
20
+ """
21
+ Retrieve the drug names that require asking a doctor before use due to a patient's specific condi...
22
+
23
+ Parameters
24
+ ----------
25
+ condition : str
26
+ The condition or symptom that requires consulting a doctor.
27
+ limit : int
28
+ The number of records to return.
29
+ skip : int
30
+ The number of records to skip.
31
+ stream_callback : Callable, optional
32
+ Callback for streaming output
33
+ use_cache : bool, default False
34
+ Enable caching
35
+ validate : bool, default True
36
+ Validate parameters
37
+
38
+ Returns
39
+ -------
40
+ Any
41
+ """
42
+ # Handle mutable defaults to avoid B006 linting error
43
+
44
+ return get_shared_client().run_one_function(
45
+ {
46
+ "name": "FDA_get_drug_name_by_info_on_conditions_for_doctor_consultation",
47
+ "arguments": {"condition": condition, "limit": limit, "skip": skip},
48
+ },
49
+ stream_callback=stream_callback,
50
+ use_cache=use_cache,
51
+ validate=validate,
52
+ )
53
+
54
+
55
+ __all__ = ["FDA_get_drug_name_by_info_on_conditions_for_doctor_consultation"]
@@ -0,0 +1,59 @@
1
+ """
2
+ FDA_get_drug_name_by_labor_and_delivery_info
3
+
4
+ Retrieve the drug name based on information about the drug’s use during labor or delivery.
5
+ """
6
+
7
+ from typing import Any, Optional, Callable
8
+ from ._shared_client import get_shared_client
9
+
10
+
11
+ def FDA_get_drug_name_by_labor_and_delivery_info(
12
+ labor_and_delivery_info: str,
13
+ limit: Optional[int] = None,
14
+ skip: Optional[int] = None,
15
+ *,
16
+ stream_callback: Optional[Callable[[str], None]] = None,
17
+ use_cache: bool = False,
18
+ validate: bool = True,
19
+ ) -> Any:
20
+ """
21
+ Retrieve the drug name based on information about the drug’s use during labor or delivery.
22
+
23
+ Parameters
24
+ ----------
25
+ labor_and_delivery_info : str
26
+ Information about the drug’s use during labor or delivery.
27
+ limit : int
28
+ The number of records to return.
29
+ skip : int
30
+ The number of records to skip.
31
+ stream_callback : Callable, optional
32
+ Callback for streaming output
33
+ use_cache : bool, default False
34
+ Enable caching
35
+ validate : bool, default True
36
+ Validate parameters
37
+
38
+ Returns
39
+ -------
40
+ Any
41
+ """
42
+ # Handle mutable defaults to avoid B006 linting error
43
+
44
+ return get_shared_client().run_one_function(
45
+ {
46
+ "name": "FDA_get_drug_name_by_labor_and_delivery_info",
47
+ "arguments": {
48
+ "labor_and_delivery_info": labor_and_delivery_info,
49
+ "limit": limit,
50
+ "skip": skip,
51
+ },
52
+ },
53
+ stream_callback=stream_callback,
54
+ use_cache=use_cache,
55
+ validate=validate,
56
+ )
57
+
58
+
59
+ __all__ = ["FDA_get_drug_name_by_labor_and_delivery_info"]