tomwer 1.3.0.dev2__py3-none-any.whl → 1.3.0rc10__py3-none-any.whl

tomwer/gui/reconstruction/lamino/tofu/tofuoutput.py

@@ -1,757 +0,0 @@
-# coding: utf-8
-# /*##########################################################################
-#
-# Copyright (c) 2016-2017 European Synchrotron Radiation Facility
-#
-# Permission is hereby granted, free of charge, to any person obtaining a copy
-# of this software and associated documentation files (the "Software"), to deal
-# in the Software without restriction, including without limitation the rights
-# to use, copy, modify, merge, publish, distribute, sublicense, and/or sell
-# copies of the Software, and to permit persons to whom the Software is
-# furnished to do so, subject to the following conditions:
-#
-# The above copyright notice and this permission notice shall be included in
-# all copies or substantial portions of the Software.
-#
-# THE SOFTWARE IS PROVIDED "AS IS", WITHOUT WARRANTY OF ANY KIND, EXPRESS OR
-# IMPLIED, INCLUDING BUT NOT LIMITED TO THE WARRANTIES OF MERCHANTABILITY,
-# FITNESS FOR A PARTICULAR PURPOSE AND NONINFRINGEMENT. IN NO EVENT SHALL THE
-# AUTHORS OR COPYRIGHT HOLDERS BE LIABLE FOR ANY CLAIM, DAMAGES OR OTHER
-# LIABILITY, WHETHER IN AN ACTION OF CONTRACT, TORT OR OTHERWISE, ARISING FROM,
-# OUT OF OR IN CONNECTION WITH THE SOFTWARE OR THE USE OR OTHER DEALINGS IN
-# THE SOFTWARE.
-#
-# ###########################################################################*/
-
-__authors__ = ["H. Payno"]
-__license__ = "MIT"
-__date__ = "01/06/2018"
-
-
-import logging
-import os
-
-from silx.gui import qt
-
-from tomwer.core.process.reconstruction.lamino.tofu import (
-    LAMINO_ANGLE_TYPE,
-    PSI_ANGLE_TYPE,
-    ROTATION_CENTER_TYPE,
-    SLICE_STACK_TYPE,
-)
-from tomwer.core.settings import get_lbsram_path
-from tomwer.core.utils.char import DELTA_CHAR
-from tomwer.gui.reconstruction.lamino.tofu import settings
-from tomwer.gui.utils.illustrations import _IllustrationWidget
-
-from .misc import PadlockButton, _AngleWidget, _RegionLE
-from .TofuOptionLoader import _getterSetter, _TofuOptionLoader
-
-_logger = logging.getLogger(__name__)
-
-
-class OutputTofuWidget(_TofuOptionLoader, qt.QWidget):
-    """
-    Main widgets for the tofu reconstruction
-    """
-
-    def __init__(self, parent):
-        qt.QWidget.__init__(self, parent)
-        self._scan_type = "slice stack"
-        self.__scanID = None
-        self.setLayout(qt.QGridLayout())
-
-        self._controlWidget = qt.QWidget(parent=self)
-        self._controlWidget.setLayout(qt.QVBoxLayout())
-
-        self._volumeAngleGrp = VolumeAnglesWidget(parent=self)
-        self._stepSizeAndRange = StepGroup(parent=self._controlWidget)
-
-        self._planeDisplay = _IllustrationWidget(parent=self)
-        self._planeDisplay.setMinimumSize(qt.QSize(250, 250))
-        self._planeDisplay.setSizePolicy(
-            qt.QSizePolicy.Preferred, qt.QSizePolicy.Preferred
-        )
-        self._controlWidget.layout().setContentsMargins(0, 0, 0, 0)
-        self._controlWidget.layout().addWidget(self._volumeAngleGrp)
-        self._controlWidget.layout().addWidget(self._stepSizeAndRange)
-        self._region = RegionGB(parent=self)
-        self._controlWidget.layout().addWidget(self._region)
-
-        self._outputWidget = _OutputPathWidget(parent=self)
-        self.layout().addWidget(self._outputWidget, 1, 0, 1, 2)
-
-        self.layout().addWidget(self._controlWidget, 0, 0)
-        self.layout().addWidget(self._planeDisplay, 0, 1)
-
-        spacer = qt.QWidget(self)
-        spacer.setSizePolicy(qt.QSizePolicy.Minimum, qt.QSizePolicy.Expanding)
-        self.layout().addWidget(spacer, 2, 0)
-
-        self._controlWidget.setFixedWidth(500)
-
-        # signal/slot connect
-        self._volumeAngleGrp.sigPlaneChanged.connect(self._updateOutput)
-
-        # expose API
-        self.getAngles = self._volumeAngleGrp._angles.get
-        self.getOutput = self._outputWidget.getOutput
-        self.setOutput = self._outputWidget.setOutput
-        self.lockOutput = self._outputWidget.lock
-        self.forceLbsram = self._outputWidget.forceLbsram
-        self.setForceLbsram = self._outputWidget.setForceLbsram
-        self.isOutputFolderLocked = self._outputWidget.isLocked
-        self.removeTiff = self._outputWidget.removeIfExist
-        self.setRemoveTiff = self._outputWidget.setRemoveIfExist
-        self.setVolumeAngleX = self._volumeAngleGrp.setVolumeAngleX
-        self.setVolumeAngleY = self._volumeAngleGrp.setVolumeAngleY
-        self.setVolumeAngleZ = self._volumeAngleGrp.setVolumeAngleZ
-        self.getVolumeAngleX = self._volumeAngleGrp.getVolumeAngleX
-        self.getVolumeAngleY = self._volumeAngleGrp.getVolumeAngleY
-        self.getVolumeAngleZ = self._volumeAngleGrp.getVolumeAngleZ
-        self.setRegionSelType = self._stepSizeAndRange.setRegionSelType
-        self.setRegion = self._stepSizeAndRange.setRegion
-        self.getRegion = self._stepSizeAndRange.getRegion
-        self.dryRun = self._outputWidget.dryRun
-        self.setHighLimit = self._stepSizeAndRange.setHighLimit
-        self.resetHighLimit = self._stepSizeAndRange.resetHighLimit
-        self.getZ = self._stepSizeAndRange.getZ
-        self.setZ = self._stepSizeAndRange.setZ
-
-        options = {
-            "x-region": _getterSetter(
-                getter=self._region.getXRegion, setter=self._region.setXRegionFrmStr
-            ),
-            "y-region": _getterSetter(
-                getter=self._region.getYRegion, setter=self._region.setYRegionFrmStr
-            ),
-            "volume-angle-x": _getterSetter(
-                getter=self.getVolumeAngleX, setter=self.setVolumeAngleX
-            ),
-            "volume-angle-y": _getterSetter(
-                getter=self.getVolumeAngleY, setter=self.setVolumeAngleY
-            ),
-            "volume-angle-z": _getterSetter(
-                getter=self.getVolumeAngleZ, setter=self.setVolumeAngleZ
-            ),
-            "region": _getterSetter(getter=self.getRegion, setter=self.setRegion),
-            "output": _getterSetter(getter=self.getOutput, setter=self.setOutput),
-            "dry-run": _getterSetter(getter=self.dryRun, setter=self.clearOutput),
-            "z": _getterSetter(getter=self.getZ, setter=self.setZ),
-            "rm-tif": _getterSetter(getter=self.removeTiff, setter=self.setRemoveTiff),
-        }
-        _TofuOptionLoader.__init__(self, options=options)
-
-    def clearOutput(self, *args, **kwargs):
-        self._outputWidget.clear()
-
-    def _setImg(self, plane):
-        assert plane in ("XY", "XZ", "YZ", "manual")
-        self._planeDisplay.setImage(plane + "_lamino")
-
-    def loadFromScan(self, scanID):
-        self.__scanID = scanID
-        self._updateOutput()
-
-    def _updateOutput(self):
-        if self.__scanID is None:
-            return
-        try:
-            if self.isOutputFolderLocked() is False:
-                self.setOutput(os.path.join(self.__scanID, self._getNameExtension()))
-        except Exception as error:
-            _logger.error(error)
-
-    def setPlane(self, plane):
-        self._volumeAngleGrp._grpPlane.setPlane(plane=plane)
-
-    def _getNameExtension(self):
-        """Return the default name extension according to the scan type"""
-        if self._scan_type == SLICE_STACK_TYPE:
-            if self._volumeAngleGrp._grpPlane.getPlane() == "XY":
-                return "xySlice"
-            elif self._volumeAngleGrp._grpPlane.getPlane() == "XZ":
-                return "xzSlice"
-            elif self._volumeAngleGrp._grpPlane.getPlane() == "YZ":
-                return "yzSlice"
-            elif self._volumeAngleGrp._grpPlane.getPlane() == "manual":
-                return "Slice"
-        elif self._scan_type == ROTATION_CENTER_TYPE:
-            return "xCenter"
-        elif self._scan_type == LAMINO_ANGLE_TYPE:
-            return "ctAngle"
-        elif self._scan_type in (PSI_ANGLE_TYPE, "psi angle"):
-            return "rotC"
-        else:
-            return "Slice"
-
-    def _setScanType(self, scan_type):
-        self._scan_type = scan_type
-        illustration = scan_type
-        if illustration == "slice stack":
-            if self._volumeAngleGrp._grpPlane.getPlane() == "XY":
-                illustration = "xy slice"
-            elif self._volumeAngleGrp._grpPlane.getPlane() == "XZ":
-                illustration = "xz slice"
-            elif self._volumeAngleGrp._grpPlane.getPlane() == "YZ":
-                illustration = "yz slice"
-            elif self._volumeAngleGrp._grpPlane.getPlane() == "manual":
-                illustration = "manual slice"
-        self._planeDisplay.setImage(illustration)
-
-        self._updateOutput()
-
-
-class PlaneGroup(qt.QGroupBox):
-    sigPlaneChanged = qt.Signal(str)
-    """Signal emitted when the plane selection changed"""
-
-    def __init__(self, parent):
-        qt.QGroupBox.__init__(self, parent=parent, title="Plane selection")
-
-        self.setLayout(qt.QVBoxLayout())
-        self._XYPlaneRB = qt.QRadioButton("XY", parent=self)
-        self.layout().addWidget(self._XYPlaneRB)
-        self._YZPlaneRB = qt.QRadioButton("YZ", parent=self)
-        self.layout().addWidget(self._YZPlaneRB)
-        self._XZPlaneRB = qt.QRadioButton("XZ", parent=self)
-        self.layout().addWidget(self._XZPlaneRB)
-        self._autoPlaneRB = qt.QRadioButton("manual", parent=self)
-        self.layout().addWidget(self._autoPlaneRB)
-
-        self._rBtns = (
-            self._XYPlaneRB,
-            self._XZPlaneRB,
-            self._YZPlaneRB,
-            self._autoPlaneRB,
-        )
-        self._XYPlaneRB.setChecked(True)
-
-        for btn in self._rBtns:
-            btn.toggled.connect(self.__planeChangedCllbck)
-
-            self.setSizePolicy(qt.QSizePolicy.Preferred, qt.QSizePolicy.Preferred)
-
-    def getPlane(self):
-        if self._XYPlaneRB.isChecked():
-            return "XY"
-        if self._YZPlaneRB.isChecked():
-            return "YZ"
-        if self._XZPlaneRB.isChecked():
-            return "XZ"
-        if self._autoPlaneRB.isChecked():
-            return "manual"
-
-    def setPlane(self, plane):
-        assert plane in ("XY", "XZ", "YZ", "manual")
-        for w in self._rBtns:
-            w.blockSignals(True)
-        if plane == "XY":
-            self._XYPlaneRB.setChecked(True)
-        elif plane == "XZ":
-            self._XZPlaneRB.setChecked(True)
-        elif plane == "YZ":
-            self._YZPlaneRB.setChecked(True)
-        else:
-            self._autoPlaneRB.setChecked(True)
-        self.sigPlaneChanged.emit(plane)
-        for w in self._rBtns:
-            w.blockSignals(False)
-
-    def __planeChangedCllbck(self):
-        self.sigPlaneChanged.emit(self.getPlane())
-
-    def setManualEdition(self):
-        self._autoPlaneRB.setChecked(True)
-
-
-class VolumeAnglesWidget(qt.QWidget):
-    def __init__(self, parent):
-        qt.QWidget.__init__(self, parent)
-        self.setLayout(qt.QHBoxLayout())
-        self._grpPlane = PlaneGroup(parent=self)
-        self.layout().addWidget(self._grpPlane)
-        self._angles = _AnglesWidget(parent=self)
-        self.layout().addWidget(self._angles)
-
-        # API exposed
-        self.sigPlaneChanged = self._grpPlane.sigPlaneChanged
-        self.sigAnglesEdited = self._angles.sigAnglesEdited
-
-        self.sigAnglesEdited.connect(self._grpPlane.setManualEdition)
-        self.sigPlaneChanged.connect(self._resetAngleFor)
-
-        self.setAngles = self._angles.set
-        self.getAngles = self._angles.get
-        self.setVolumeAngleX = self._angles.setVolumeAngleX
-        self.setVolumeAngleY = self._angles.setVolumeAngleY
-        self.setVolumeAngleZ = self._angles.setVolumeAngleZ
-        self.getVolumeAngleX = self._angles.getVolumeAngleX
-        self.getVolumeAngleY = self._angles.getVolumeAngleY
-        self.getVolumeAngleZ = self._angles.getVolumeAngleZ
-
-    def _resetAngleFor(self, plane):
-        assert plane in ("XY", "XZ", "YZ", "manual")
-        if plane == "manual":
-            return
-
-        if plane == "XY":
-            self._angles.set(0, 0, 0)
-        if plane == "XZ":
-            self._angles.set(90, 0, 0)
-        if plane == "YZ":
-            self._angles.set(0, 90, 0)
-
-
-class _AnglesWidget(qt.QWidget):
-    sigAnglesEdited = qt.Signal()
-    """Signal emitted when an angle is edited"""
-
-    def __init__(self, parent):
-        qt.QWidget.__init__(self, parent)
-        self.setLayout(qt.QVBoxLayout())
-        self.layout().setContentsMargins(0, 0, 0, 0)
-        self._spacerTop = qt.QWidget(parent=self)
-        self._spacerTop.setSizePolicy(qt.QSizePolicy.Minimum, qt.QSizePolicy.Expanding)
-        self.layout().addWidget(self._spacerTop)
-
-        self._volAngleX = _AngleWidget(parent=self, name="volume angle x")
-        self.layout().addWidget(self._volAngleX)
-        self._volAngleY = _AngleWidget(parent=self, name="volume angle y")
-        self.layout().addWidget(self._volAngleY)
-        self._volAngleZ = _AngleWidget(parent=self, name="volume angle z")
-        self.layout().addWidget(self._volAngleZ)
-        self._spacerBot = qt.QWidget(parent=self)
-        self._spacerBot.setSizePolicy(qt.QSizePolicy.Minimum, qt.QSizePolicy.Expanding)
-        self.layout().addWidget(self._spacerBot)
-
-        self._volAngleX.sigEdited.connect(self.sigAnglesEdited)
-        self._volAngleY.sigEdited.connect(self.sigAnglesEdited)
-        self._volAngleZ.sigEdited.connect(self.sigAnglesEdited)
-
-        # aliases
-        self.setVolumeAngleX = self._volAngleX.setAngle
-        self.setVolumeAngleY = self._volAngleY.setAngle
-        self.setVolumeAngleZ = self._volAngleZ.setAngle
-        self.getVolumeAngleX = self._volAngleX.getAngle
-        self.getVolumeAngleY = self._volAngleY.getAngle
-        self.getVolumeAngleZ = self._volAngleZ.getAngle
-
-    def set(self, xAngle, yAngle, zAngle):
-        self.blockSignals(True)
-        self.setVolumeAngleX(xAngle)
-        self.setVolumeAngleY(yAngle)
-        self.setVolumeAngleZ(zAngle)
-        self.blockSignals(False)
-
-    def get(self):
-        """
-
-        :return: tuple of (anglex, angley, anglez)
-        """
-        return (
-            self._volAngleX.getAngle(),
-            self._volAngleY.getAngle(),
-            self._volAngleZ.getAngle(),
-        )
-
-
-class StepGroup(qt.QGroupBox):
-    sigSelectionChanged = qt.Signal()
-    """Signal emitted when the selection changed"""
-
-    _NB_SLICE_NAME = "number of slices"
-    _RANGE_NAME = "range"
-
-    _TITLE = "Cut selection"
-
-    def __init__(self, parent):
-        qt.QGroupBox.__init__(self, parent=parent, title=StepGroup._TITLE)
-        self._xcenter = 0.0
-        self.__mediumLimit = settings._N_SLICE_LIMITS_MEDIUM
-        self.__highLimit = settings._N_SLICE_LIMITS_HIGH
-
-        self._defaultStyleSheet = ""
-        self._mediumLimitStyleSheet = (
-            "QLineEdit {" + self._convertToStyleSheetColor(settings._COLOR_MEDIUM) + "}"
-        )
-        self._highLimitStyleSheet = (
-            "QLineEdit {" + self._convertToStyleSheetColor(settings._COLOR_HIGH) + "}"
-        )
-
-        self.setLayout(qt.QGridLayout())
-
-        # z
-        self._z_label = qt.QLabel("z", parent=self)
-        self.layout().addWidget(self._z_label, 0, 0)
-        self._zSB = qt.QSpinBox(parent=self)
-        self._zSB.setMinimum(-99999)
-        self._zSB.setValue(0)
-        self.layout().addWidget(self._zSB, 0, 1)
-
-        # step size
-        self._stepLabel = qt.QLabel("", parent=self)
-        self.layout().addWidget(self._stepLabel, 1, 0)
-
-        self._stepSize = qt.QLineEdit("1.0", parent=self)
-        validator = qt.QDoubleValidator(parent=self._stepSize)
-        validator.setBottom(0)
-        self._stepSize.setValidator(validator)
-        self.layout().addWidget(self._stepSize, 1, 1, 1, 6)
-
-        style = qt.QApplication.style()
-        icon = style.standardIcon(qt.QStyle.SP_MessageBoxWarning)
-        self._warningLabel = qt.QLabel("", parent=self)
-        self._warningLabel.setPixmap(icon.pixmap(30, state=qt.QIcon.On))
-        self._warningLabel.setVisible(False)
-        self._warningLabel.setToolTip(
-            "Number of slice to reconstruct seems to high, might fail"
-        )
-
-        self.layout().addWidget(self._warningLabel, 1, 7, 1, 1)
-
-        # selection mode
-        self.layout().addWidget(qt.QLabel("selection mode:"), 2, 0)
-        self._selModeTooltips = {
-            self._NB_SLICE_NAME: "Will pick n slices from centered in the center, "
-            "spaced of step size",
-            self._RANGE_NAME: "Will pick slices from a range, each spaced of "
-            "step size",
-        }
-        self._selectionMode = qt.QComboBox(parent=self)
-        self._selectionMode.addItem(self._NB_SLICE_NAME)
-        idx = self._selectionMode.findText(self._NB_SLICE_NAME)
-        self._selectionMode.setItemData(
-            idx, self._selModeTooltips[self._NB_SLICE_NAME], qt.Qt.ToolTipRole
-        )
-        self._selectionMode.addItem(self._RANGE_NAME)
-        idx = self._selectionMode.findText(self._RANGE_NAME)
-        self._selectionMode.setItemData(
-            idx, self._selModeTooltips[self._RANGE_NAME], qt.Qt.ToolTipRole
-        )
-        self.layout().addWidget(self._selectionMode, 2, 1)
-
-        self._nCutLE = qt.QLineEdit(str(-settings.SLICE_STACK_STEP_SIZE), self)
-        validator = qt.QIntValidator(parent=self._nCutLE)
-        validator.setBottom(1)
-        self._nCutLE.setValidator(validator)
-        self.layout().addWidget(self._nCutLE, 2, 2)
-
-        self._fromLabel = qt.QLabel("from:", self)
-        self.layout().addWidget(self._fromLabel, 2, 3)
-        self._fromLE = qt.QLineEdit(str(-settings.SLICE_STACK_RANGE_HS), self)
-        validator = qt.QDoubleValidator(parent=self._fromLE)
-        self._fromLE.setValidator(validator)
-        self.layout().addWidget(self._fromLE, 2, 4)
-        self._toLabel = qt.QLabel("to:", self)
-        self.layout().addWidget(self._toLabel, 2, 5)
-        self._toLE = qt.QLineEdit(str(settings.SLICE_STACK_RANGE_HS), self)
-        validator = qt.QDoubleValidator(parent=self._toLE)
-        self._toLE.setValidator(validator)
-        self.layout().addWidget(self._toLE, 2, 6)
-
-        self.setRegionSelType(self._RANGE_NAME)
-        self._selectionMode.currentIndexChanged[str].connect(self.setRegionSelType)
-        self._setStepSizeType("(pixel)")
-
-        # connect signals / SLOT
-        for widget in (self._nCutLE, self._stepSize, self._toLE, self._fromLE):
-            widget.textChanged.connect(self._updateLimitsColor)
-
-    @staticmethod
-    def _convertToStyleSheetColor(color):
-        assert type(color) is tuple
-        _color = []
-        [_color.append(str(c)) for c in color]
-        return "color: rgb(" + ",".join(_color) + ")"
-
-    def _setStepSizeType(self, _type):
-        assert type(_type) is str
-        self._stepLabel.setText(" ".join(("Step size -", DELTA_CHAR, _type)))
-
-    def setRegionSelType(self, selType):
-        """
-
-        :param str selType: should be in ('range', 'number of cut')
-        """
-        assert selType in (self._RANGE_NAME, self._NB_SLICE_NAME)
-        index = self._selectionMode.findText(selType)
-        assert index >= 0
-        self._selectionMode.blockSignals(True)
-        self._selectionMode.setCurrentIndex(index)
-        self._selectionMode.setToolTip(self._selModeTooltips[selType])
-        for w in (self._fromLE, self._toLE, self._toLabel, self._fromLabel):
-            w.setVisible(selType == self._RANGE_NAME)
-        self._nCutLE.setVisible(selType == self._NB_SLICE_NAME)
-        self._selectionMode.blockSignals(False)
-        self.sigSelectionChanged.emit()
-
-    def getSelectionType(self):
-        """Return active selected mode ('range' or 'number of cut')"""
-        return self._selectionMode.currentText()
-
-    def getStepSize(self):
-        """Return step size in fofu ref (meter)"""
-        return float(self._stepSize.text())
-
-    def getNCut(self):
-        if self.getSelectionType() != self._NB_SLICE_NAME:
-            return None
-        else:
-            return int(self._nCutLE.text())
-
-    def setNCut(self, ncut):
-        self._nCutLE.setText(str(ncut))
-
-    def getRegion(self):
-        if self.getSelectionType() == self._NB_SLICE_NAME:
-            start_from = self._xcenter
-            if self._zSB.isVisible() is True:
-                start_from = self.getZ() or 0.0
-            nbCut = self.getNCut()
-            if nbCut is None:
-                raise ValueError("couldn't find nb cut")
-            else:
-                _from = (
-                    -nbCut / 2 * self.getStepSize()  # pylint: disable=E1130
-                    + start_from
-                )
-                _to = nbCut / 2 * self.getStepSize() + start_from
-                return _from, _to, self.getStepSize()
-        else:
-            start_from = 0.0
-            if self._zSB.isVisible() is True:
-                start_from = self.getZ() or 0.0
-            # question: are from, to always integers ?
-            return (
-                float(self._fromLE.text()) + start_from,
-                float(self._toLE.text()) + start_from,
-                float(self.getStepSize()),
-            )
-
-    def setRegion(self, region):
-        if type(region) is str:
-            try:
-                _from, _to, step_size = region.split(",")
-            except Exception:
-                _logger.warning(
-                    "Fail to setRegion range. given string "
-                    "does not fir the standard (from, to, stepSize)"
-                )
-                return
-        else:
-            assert type(region) is tuple
-            _from, _to, step_size = region
-            _from, _to, step_size = str(_from), str(_to), str(step_size)
-
-        self._fromLE.setText(_from)
-        self._toLE.setText(_to)
-        self._stepSize.setText(step_size)
-
-    def _updateLimitsColor(self, *argv, **kwargs):
-        warning = False
-        if self._isUpperHightLimit() is True:
-            styleSheet = self._highLimitStyleSheet
-            warning = True
-        elif self._isUpperMediumLimit() is True:
-            styleSheet = self._mediumLimitStyleSheet
-            warning = True
-        else:
-            styleSheet = self._defaultStyleSheet
-
-        for widget in (self._fromLE, self._toLE, self._nCutLE, self._stepSize):
-            widget.blockSignals(True)
-
-        self.setStyleSheet(styleSheet)
-
-        for widget in (self._fromLE, self._toLE, self._nCutLE, self._stepSize):
-            widget.blockSignals(False)
-
-        self._warningLabel.setVisible(warning)
-
-    def _isUpperMediumLimit(self):
-        return self._getNSlices() > self.__mediumLimit
-
-    def _isUpperHightLimit(self):
-        return self._getNSlices() > self.__highLimit
-
-    def _getNSlices(self):
-        """
-
-        :return: number of slice to be reconstructed
-        :rtype: int
-        """
-        if self.getSelectionType() == self._NB_SLICE_NAME:
-            return self.getNCut()
-        else:
-            # as this cast is made during edition, several value can fail on the
-            # float conversion or division
-            try:
-                _from = float(self._fromLE.text())
-                _to = float(self._toLE.text())
-                _step = float(self.getStepSize())
-                return int((_to - _from) / _step)
-            except Exception:
-                return 1.0
-
-    def setHighLimit(self, val):
-        if val == self.__highLimit:
-            return
-        if val is None:
-            self.resetHighLimit()
-            return
-        if val <= 0.0:
-            _logger.error("incoherent height limit: %s" % val)
-            return
-
-        self.__highLimit = val
-        self._updateLimitsColor()
-
-    def resetHighLimit(self):
-        self.__highLimit = settings._N_SLICE_LIMITS_HIGH
-        self._updateLimitsColor()
-
-    def getZ(self):
-        if self._zSB.isVisible():
-            return self._zSB.value()
-        else:
-            return None
-
-    def setZ(self, value):
-        if value is None:
-            return
-        return self._zSB.setValue(int(value))
-
-    def _setXCenter(self, xcenter):
-        self._xcenter = xcenter
-
-
-class RegionGB(qt.QGroupBox):
-    def __init__(self, parent):
-        super().__init__("ROI", parent=parent)
-        self.setLayout(qt.QVBoxLayout())
-        self._xRegion = _RegionLE(name="x ROI", parent=self)
-        self.layout().addWidget(self._xRegion)
-        self._yRegion = _RegionLE(name="y ROI", parent=self)
-        self.layout().addWidget(self._yRegion)
-
-        # expose API
-        self.getXRegion = self._xRegion.getRegion
-        self.getYRegion = self._yRegion.getRegion
-        self.setXRegion = self._xRegion.setRegion
-        self.setYRegion = self._yRegion.setRegion
-        self.setXRegionFrmStr = self._xRegion.setRegionFromStr
-        self.setYRegionFrmStr = self._yRegion.setRegionFromStr
-
-
-class _OutputPathWidget(qt.QGroupBox):
-    class _OptionsWidget(qt.QWidget):
-        def __init__(self, parent):
-            super().__init__(parent)
-            self.setLayout(qt.QHBoxLayout())
-            self.layout().setContentsMargins(0, 0, 0, 0)
-
-            self.forceLbsram = qt.QCheckBox("force lbsram", parent=self)
-            self.forceLbsram.setToolTip("Make sure reconstruction is saved in lbsram")
-            self.layout().addWidget(self.forceLbsram)
-            self.forceLbsram.setVisible(os.path.exists(get_lbsram_path()))
-
-            self.removeExisting = qt.QCheckBox('rm "*.tif"', parent=self)
-            self.removeExisting.setToolTip("Remove existing files if any")
-            self.layout().addWidget(self.removeExisting)
-            spacer = qt.QWidget(self)
-            spacer.setSizePolicy(qt.QSizePolicy.Expanding, qt.QSizePolicy.Minimum)
-            self.layout().addWidget(spacer)
-
-    def __init__(self, parent):
-        super().__init__("output folder", parent)
-        self.setLayout(qt.QVBoxLayout())
-        self.layout().setContentsMargins(4, 4, 4, 4)
-
-        self._checkboxWidget = _OutputPathWidget._OptionsWidget(parent=self)
-        self.layout().addWidget(self._checkboxWidget)
-
-        self._qteFolderSelected = qt.QLineEdit("", parent=self)
-        style = qt.QApplication.style()
-        icon = style.standardIcon(qt.QStyle.SP_DialogOpenButton)
-        self._qtbSelectFolder = qt.QPushButton(icon, "", parent=self)
-        self._qteFolderSelected.setToolTip(
-            "If not output folder is given, then" ' this will generate a "dry run"'
-        )
-
-        self._lockButton = PadlockButton(parent=self)
-        self._lockButton.toggled.connect(self._dealWithLbsramOptAndLocker)
-
-        leWidget = qt.QWidget(parent=self)
-        leWidget.setLayout(qt.QHBoxLayout())
-        leWidget.layout().setContentsMargins(0, 0, 0, 0)
-        leWidget.layout().addWidget(self._qteFolderSelected)
-        leWidget.layout().addWidget(self._qtbSelectFolder)
-        leWidget.layout().addWidget(self._lockButton)
-        self.layout().addWidget(leWidget)
-
-        # connect signals/SLOT
-        self._checkboxWidget.forceLbsram.toggled.connect(self._updateLbsramStatus)
-        self._qtbSelectFolder.clicked.connect(self._setFolderPathFrmDiag)
-        self._qteFolderSelected.editingFinished.connect(self._checkUpdateforLbsram)
-
-        # add some speaking API
-        self.clear = self._qteFolderSelected.clear
-        self.isLocked = self._lockButton.isLocked
-        self.forceLbsram = self._checkboxWidget.forceLbsram.isChecked
-        self.setForceLbsram = self._checkboxWidget.forceLbsram.setChecked
-        self.removeIfExist = self._checkboxWidget.removeExisting.isChecked
-        self.setRemoveIfExist = self._checkboxWidget.removeExisting.setChecked
-
-    def setOutput(self, text):
-        if self.forceLbsram() is True and text.startswith(get_lbsram_path()) is False:
-            text = os.path.join(get_lbsram_path(), text.lstrip(os.sep))
-        self._qteFolderSelected.setText(text)
-
-    def lock(self, lock=True):
-        self._lockButton.setChecked(lock)
-
-    def _setFolderPathFrmDiag(self):  # pragma: no cover
-        dialog = qt.QFileDialog(self)
-        dialog.setFileMode(qt.QFileDialog.DirectoryOnly)
-
-        if not dialog.exec_() or (len(dialog.selectedFiles()) < 1):
-            dialog.close()
-            return
-        self._qteFolderSelected.setText(dialog.selectedFiles()[0])
-
-    def dryRun(self):
-        """Should we execute a dry-run and avoid storing reconstruction"""
-        return self.getOutput() is None
-
-    def getOutput(self):
-        """Return output folder whre the reconstruction should be saved"""
-        if self._qteFolderSelected.text() == "":
-            return None
-        else:
-            return self.__getOutputWithLbsramExtension()
-
-    def _dealWithLbsramOptAndLocker(self, toggle):
-        self._checkboxWidget.forceLbsram.setDisabled(toggle)
-        if toggle:
-            self._checkboxWidget.forceLbsram.setChecked(False)
-
-    def _updateLbsramStatus(self, toggle):
-        if toggle is True:
-            self._qteFolderSelected.setText(self.__getOutputWithLbsramExtension())
-
-    def __getOutputWithLbsramExtension(self):
-        _output = self._qteFolderSelected.text()
-        if (
-            self.forceLbsram() is True
-            and _output.startswith(get_lbsram_path()) is False
-        ):
-            _output = os.path.join(get_lbsram_path(), _output.lstrip(os.sep))
-        return _output
-
-    def _checkUpdateforLbsram(self):
-        """Check if the line edit value has to be changed if force lbsram is
-        active and the line does not start with it"""
-        if self.forceLbsram() is True:
-            if not self._qteFolderSelected.text().startswith(get_lbsram_path()):
-                self._qteFolderSelected.setText(self.__getOutputWithLbsramExtension())